Citrus Sinensis ID: 028362

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Secondary Structure (PSIPRED)
cccccccEEEEEEEcccccccEEEEEHHcccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHHcccHHHHHHccccccEEEEEEcccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEccHHccccHHHHHHHHHHHHccccccccccccccccEEEEcccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccccccEEEEEEccEEEEEEEEcccccccccccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccccccccccccccEEEEEccccEEEEEc
Coil and Loop (DISEMBL)
massasrfikcvtvgdgavgkTCMLICYtsnkfptdyiptvfdnfsanvvaegttvnlglwdtagqedynrlrplsyrgaDVFVLAFSLVSRASYENVLKKWIpelqhyspgvpvvlvgtkldlredkhyladhpglvpvttAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Flexible Loop (DISEMBL)
massasrfikcvtvgdgavgkTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIpelqhyspgVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Low Complexity Region (SEG)
MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAikvvikppqkqkekkkkQRGCLLNVFCGRNLVRFE
Disordered region (IsUnstruct)
******RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI**************GCLLNVFCGRNLV***
Disordered Region (DISOPRED)
******R***CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY*A**PG**PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV*********************VFCGRNLVRFE
Disordered Region (DISEMBL)
MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP***********RGCLLNVFCGRNLVRFE
Disordered Region (DISPRO)
****ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ*****KQRGCLLNVFCGRNLVRFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q6Z808	214	Rac-like GTP-binding prot	yes	no	1.0	0.981	0.859	1e-105
O82481	215	Rac-like GTP-binding prot	yes	no	0.990	0.967	0.855	1e-102
Q9SU67	208	Rac-like GTP-binding prot	no	no	0.976	0.985	0.846	1e-101
Q67VP4	215	Rac-like GTP-binding prot	no	no	0.871	0.851	0.934	1e-100
O04369	197	Rac-like GTP-binding prot	N/A	no	0.919	0.979	0.823	2e-92
Q6Z7L8	197	Rac-like GTP-binding prot	no	no	0.928	0.989	0.779	7e-92
Q68Y52	214	Rac-like GTP-binding prot	no	no	0.976	0.957	0.740	2e-91
Q6EP31	197	Rac-like GTP-binding prot	no	no	0.928	0.989	0.815	9e-90
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	0.842	0.898	0.858	1e-89
P92978	197	Rac-like GTP-binding prot	no	no	0.842	0.898	0.847	5e-89

>sp|Q6Z808|RAC3_ORYSJ Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/213 (85%), Positives = 200/213 (93%), Gaps = 3/213 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV + TTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN++KKWIPELQHY+PGVP+VLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYL DHPG++PVTTAQGEELRKQIGA+YYIECSSKTQQNVK VFDAAIKVVI
Sbjct: 121 KLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVI 180

Query: 181 KPPQKQKE--KKKKQRGC-LLNVFCGRNLVRFE 210
           +PP KQ+E  KKK ++GC ++N+F GR +  F+
Sbjct: 181 QPPTKQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/214 (85%), Positives = 194/214 (90%), Gaps = 6/214 (2%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGL
Sbjct: 1   MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVL+FSLVSRASYENV KKWIPELQH++PGVP+VLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGL PVTTAQGEELRK IGA+YYIECSSKTQQNVKAVFD+AIK VI
Sbjct: 121 KLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVI 180

Query: 181 KP------PQKQKEKKKKQRGCLLNVFCGRNLVR 208
           KP        K+K+K+K   GCL NV CGR + R
Sbjct: 181 KPLVKQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/208 (84%), Positives = 194/208 (93%), Gaps = 3/208 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS NVV EG TVNLGL
Sbjct: 1   MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSL+SRASYENV KKWIPELQH++PGVP+VLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           K+DLRED+HYL+DHPGL PVTT+QGEELRK IGA+YYIECSSKTQQNVKAVFDAAIKVVI
Sbjct: 121 KMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVI 180

Query: 181 KPP---QKQKEKKKKQRGCLLNVFCGRN 205
           KP    +++K+K+K + GCL N+ CG+N
Sbjct: 181 KPAVKQKEKKKKQKPRSGCLSNILCGKN 208

Acts as a negative regulator of abscisic acid (ABA) responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67VP4|RAC4_ORYSJ Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/183 (93%), Positives = 178/183 (97%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY+PTVFDNFSANVV +GTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVDGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV+KKW+PELQHY+PGVP+VLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYL DHP LVPVTTAQGEELRK IGA+ YIECSSKTQQNVKAVFDAAIKVVI
Sbjct: 121 KLDLREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQQNVKAVFDAAIKVVI 180

Query: 181 KPP 183
           KPP
Sbjct: 181 KPP 183

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  338 bits (867), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/193 (82%), Positives = 183/193 (94%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLD 121

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           LR+DKH+LADHPG VP+TTAQGEELRK IGA  YIECSSKTQQNVKAVFDAAIKVV++PP
Sbjct: 122 LRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPP 181

Query: 184 QKQKEKKKKQRGC 196
           +++K+K++ Q+ C
Sbjct: 182 KQKKKKREAQKSC 194

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  336 bits (861), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 152/195 (77%), Positives = 176/195 (90%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S +RFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct: 2   STARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+P VP+VLVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLD 121

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           LREDK +  DHPGL P++TAQGEEL++ IGA+ YIECSSKTQQNVK+VFD+AIKVV+ PP
Sbjct: 122 LREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCPP 181

Query: 184 QKQKEKKKKQRGCLL 198
           + +K+  +KQR C +
Sbjct: 182 KPKKKNTRKQRSCWI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1

 Score =  335 bits (858), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/212 (74%), Positives = 181/212 (85%), Gaps = 7/212 (3%)

Query: 3   SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
           S A++FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWD
Sbjct: 2   SGATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWD 61

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
           TAGQEDY+RLRPLSYRGAD+FVLAFSL+SRASYENVLKKW+PEL+ ++P VP+VLVGTKL
Sbjct: 62  TAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKL 121

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           DLR+ + YLADHP    +TTAQGEELRKQIGA+ YIECSSKTQQN+KAVFD AIKVV++P
Sbjct: 122 DLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVLQP 181

Query: 183 PQKQKE------KKKKQRGCLL-NVFCGRNLV 207
           P+++ E      K ++  GC L N+ CG   V
Sbjct: 182 PRRRGETTMARKKTRRSTGCSLKNLMCGSACV 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  329 bits (843), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 159/195 (81%), Positives = 183/195 (93%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G+TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLD 121

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           LR+DK +  DHPG VP++TAQGEELRK IGA+ YIECSSKTQQN+KAVFDAAIKVV++PP
Sbjct: 122 LRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPP 181

Query: 184 QKQKEKKKKQRGCLL 198
           +++K+KKK Q+GC +
Sbjct: 182 KQKKKKKKAQKGCAI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  328 bits (842), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 152/177 (85%), Positives = 165/177 (93%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           LR+DK +  DHPG VP+TTAQGEELRKQIGA YYIECSSKTQ NVK VFDAAIKVV+
Sbjct: 122 LRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 150/177 (84%), Positives = 166/177 (93%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRF+KCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G+TVNLGLWDT
Sbjct: 2   SASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 121

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           LR+DK +  DHPG VP+TTAQGEELRKQIGA  YIECSSKTQ+NVKAVFDAAI+VV+
Sbjct: 122 LRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
224121658	211	predicted protein [Populus trichocarpa]	0.985	0.981	0.942	1e-112
224135767	211	predicted protein [Populus trichocarpa]	1.0	0.995	0.938	1e-112
388519237	211	unknown [Lotus japonicus]	0.990	0.985	0.909	1e-110
186477890	211	ROP small G protein [Medicago truncatula	0.990	0.985	0.899	1e-109
449440696	210	PREDICTED: rac-like GTP-binding protein	0.990	0.990	0.942	1e-106
351734426	212	uncharacterized protein LOC100527158 [Gl	0.995	0.985	0.861	1e-105
27527523	210	putative rac protein [Nicotiana tabacum]	0.985	0.985	0.937	1e-105
352740726	210	Rac/Rop GTPase 1 [Aquilaria microcarpa]	0.985	0.985	0.908	1e-105
345104379	211	small GTPase RacA [Gossypium thurberi] g	0.985	0.981	0.913	1e-104
324984199	211	small GTPase [Gossypium barbadense]	0.985	0.981	0.908	1e-104

>gi|224121658|ref|XP_002318640.1| predicted protein [Populus trichocarpa] gi|222859313|gb|EEE96860.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/208 (94%), Positives = 203/208 (97%), Gaps = 1/208 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PG+P+VLVG 
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGIPIVLVGA 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA+YY+ECSSKTQQNVKAVFDAAIKVVI
Sbjct: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYVECSSKTQQNVKAVFDAAIKVVI 180

Query: 181 KPPQKQKEKKKK-QRGCLLNVFCGRNLV 207
           KP QKQKE+KKK +RGCLLNVFCGR LV
Sbjct: 181 KPAQKQKERKKKPRRGCLLNVFCGRRLV 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135767|ref|XP_002322155.1| predicted protein [Populus trichocarpa] gi|222869151|gb|EEF06282.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/211 (93%), Positives = 203/211 (96%), Gaps = 1/211 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGLVPVT AQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAIKVVI
Sbjct: 121 KLDLREDKHYLADHPGLVPVTMAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 180

Query: 181 KPPQKQKEKKKK-QRGCLLNVFCGRNLVRFE 210
           KP QKQKE+KKK +RGCLLNVFCGR L+  E
Sbjct: 181 KPAQKQKERKKKPRRGCLLNVFCGRRLLCLE 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519237|gb|AFK47680.1| unknown [Lotus japonicus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/209 (90%), Positives = 202/209 (96%), Gaps = 1/209 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MAS+ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EG TVNLGL
Sbjct: 1   MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVMEGITVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH++PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGLVPVT+ QGEELRKQIGA+YYIECSSKTQQNVK +FDAAI++VI
Sbjct: 121 KLDLREDKHYLADHPGLVPVTSEQGEELRKQIGATYYIECSSKTQQNVKGIFDAAIRMVI 180

Query: 181 KPPQKQKEKKKK-QRGCLLNVFCGRNLVR 208
           KPPQKQ+EK+KK +RGC LNV CGRN+VR
Sbjct: 181 KPPQKQQEKRKKPRRGCFLNVLCGRNIVR 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186477890|gb|ACC85689.1| ROP small G protein [Medicago truncatula] gi|217071564|gb|ACJ84142.1| unknown [Medicago truncatula] gi|388511066|gb|AFK43599.1| unknown [Medicago truncatula]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/209 (89%), Positives = 200/209 (95%), Gaps = 1/209 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MAS+ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EG TVNLGL
Sbjct: 1   MASTASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV KKWIPELQH++PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVFKKWIPELQHFAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLRED+HYLADHPG+VPVTT QGEELRKQIGA+YYIECSSKTQQNVK VFDAAI++VI
Sbjct: 121 KLDLREDRHYLADHPGMVPVTTEQGEELRKQIGATYYIECSSKTQQNVKGVFDAAIRMVI 180

Query: 181 KPPQKQKEKKKK-QRGCLLNVFCGRNLVR 208
           KPPQKQ EK+KK +RGC LNV CGR++VR
Sbjct: 181 KPPQKQHEKRKKARRGCFLNVLCGRSIVR 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440696|ref|XP_004138120.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus] gi|449526347|ref|XP_004170175.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/208 (94%), Positives = 202/208 (97%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVF+LAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDK YLADHPGLVPVTT QGEELRKQIGA+YY+ECSSKTQQNVK+VFDAAIKVVI
Sbjct: 121 KLDLREDKFYLADHPGLVPVTTLQGEELRKQIGATYYVECSSKTQQNVKSVFDAAIKVVI 180

Query: 181 KPPQKQKEKKKKQRGCLLNVFCGRNLVR 208
           KPPQKQKEKK+  RGCLLNVFCGRNL R
Sbjct: 181 KPPQKQKEKKRPHRGCLLNVFCGRNLTR 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734426|ref|NP_001235733.1| uncharacterized protein LOC100527158 [Glycine max] gi|255631682|gb|ACU16208.1| unknown [Glycine max]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/210 (86%), Positives = 197/210 (93%), Gaps = 1/210 (0%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           +++A RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EG TVNLGLW
Sbjct: 3   SATAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLW 62

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH++PG+P+VLVGTK
Sbjct: 63  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTK 122

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            DLREDKHY+ADHP LVPVTT QGEELRK IGA+YYIECSSKTQQN+KAVFDAAI++VIK
Sbjct: 123 SDLREDKHYMADHPSLVPVTTDQGEELRKHIGATYYIECSSKTQQNMKAVFDAAIRMVIK 182

Query: 182 PPQKQKEKKKKQ-RGCLLNVFCGRNLVRFE 210
           PPQKQ EK+KK+ RGC LNV C RN+VR +
Sbjct: 183 PPQKQNEKRKKKPRGCFLNVLCRRNIVRLK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27527523|emb|CAD42725.1| putative rac protein [Nicotiana tabacum]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/207 (93%), Positives = 203/207 (98%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY+PTVFDNFSANVV EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN+LKKWIPELQHY+PG+PVVL GT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENILKKWIPELQHYAPGIPVVLAGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKH+LADHPGLVPVTTAQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAIKVVI
Sbjct: 121 KLDLREDKHFLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVI 180

Query: 181 KPPQKQKEKKKKQRGCLLNVFCGRNLV 207
           KPPQKQKEKKK++RGCL+NV CGR LV
Sbjct: 181 KPPQKQKEKKKQRRGCLMNVMCGRKLV 207

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|352740726|gb|AEQ62558.1| Rac/Rop GTPase 1 [Aquilaria microcarpa]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 202/208 (97%), Gaps = 1/208 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY+PTVFDNFSANV+ EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVIVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPG VPVTTAQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAI+VVI
Sbjct: 121 KLDLREDKHYLADHPGSVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIRVVI 180

Query: 181 -KPPQKQKEKKKKQRGCLLNVFCGRNLV 207
             P +++++K+K+ RGCL+NVFCGRNLV
Sbjct: 181 KPPQKQKEKKQKQNRGCLINVFCGRNLV 208

Source: Aquilaria microcarpa

Species: Aquilaria microcarpa

Genus: Aquilaria

Family: Thymelaeaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104379|gb|AEN71011.1| small GTPase RacA [Gossypium thurberi] gi|345104381|gb|AEN71012.1| small GTPase RacA [Gossypium laxum] gi|345104385|gb|AEN71014.1| small GTPase RacA [Gossypium turneri] gi|345104389|gb|AEN71016.1| small GTPase RacA [Gossypium mustelinum] gi|345104393|gb|AEN71018.1| small GTPase RacA [Gossypium darwinii] gi|345104401|gb|AEN71022.1| small GTPase RacA [Gossypium barbadense var. brasiliense] gi|345104405|gb|AEN71024.1| small GTPase RacA [Gossypium barbadense var. peruvianum] gi|345104411|gb|AEN71027.1| small GTPase RacA [Gossypium armourianum] gi|345104413|gb|AEN71028.1| small GTPase RacA [Gossypium harknessii] gi|345104415|gb|AEN71029.1| small GTPase RacA [Gossypium davidsonii] gi|345104417|gb|AEN71030.1| small GTPase RacA [Gossypium klotzschianum] gi|345104419|gb|AEN71031.1| small GTPase RacA [Gossypium aridum] gi|345104421|gb|AEN71032.1| small GTPase RacA [Gossypium gossypioides] gi|345104423|gb|AEN71033.1| small GTPase RacA [Gossypium lobatum] gi|345104425|gb|AEN71034.1| small GTPase RacA [Gossypium trilobum]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/208 (91%), Positives = 200/208 (96%), Gaps = 1/208 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+YYIECSSKTQQNVKAVFD AIKVVI
Sbjct: 121 KLDLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDDAIKVVI 180

Query: 181 -KPPQKQKEKKKKQRGCLLNVFCGRNLV 207
             P +++++KKK  RGCL+NVFCGRN V
Sbjct: 181 KPPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium thurberi

Species: Gossypium thurberi

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324984199|gb|ADY68833.1| small GTPase [Gossypium barbadense]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 199/208 (95%), Gaps = 1/208 (0%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTT NLGL
Sbjct: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTANLGL 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGT
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGT 120

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           KLDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+YYIECSSKTQQNVKAVFD AIKVVI
Sbjct: 121 KLDLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDDAIKVVI 180

Query: 181 -KPPQKQKEKKKKQRGCLLNVFCGRNLV 207
             P +++++KKK  RGCL+NVFCGRN V
Sbjct: 181 KPPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	1.0	0.981	0.798	3.6e-89
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.990	0.967	0.808	5.9e-89
TAIR|locus:2097905	208	ROP10 "RHO-related protein fro	0.976	0.985	0.802	1.2e-88
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.819	0.873	0.860	3.7e-80
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.819	0.873	0.854	9.7e-80
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.819	0.877	0.843	1.1e-78
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.814	0.876	0.836	2.3e-78
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.819	0.873	0.843	3e-78
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.819	0.868	0.825	4.8e-78
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.819	0.873	0.831	2.1e-77

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 170/213 (79%), Positives = 185/213 (86%)

Query:     1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
             MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV + TTVNLGL
Sbjct:     1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGL 60

Query:    61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
             WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN++KKWIPELQHY+PGVP+VLVGT
Sbjct:    61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGT 120

Query:   121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXX 180
             KLDLREDKHYL DHPG++PVTTAQGEELRKQIGA+YYIECSSKTQQNVK VFDAA     
Sbjct:   121 KLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVI 180

Query:   181 X--XXXXXXXXXXXQRGC-LLNVFCGRNLVRFE 210
                           ++GC ++N+F GR +  F+
Sbjct:   181 QPPTKQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 173/214 (80%), Positives = 183/214 (85%)

Query:     1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
             MASSAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV EGTTVNLGL
Sbjct:     1 MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGL 60

Query:    61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
             WDTAGQEDYNRLRPLSYRGADVFVL+FSLVSRASYENV KKWIPELQH++PGVP+VLVGT
Sbjct:    61 WDTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGT 120

Query:   121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXX 180
             KLDLREDKHYLADHPGL PVTTAQGEELRK IGA+YYIECSSKTQQNVKAVFD+A     
Sbjct:   121 KLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVI 180

Query:   181 XXXXXXXXXXXXQR------GCLLNVFCGRNLVR 208
                         ++      GCL NV CGR + R
Sbjct:   181 KPLVKQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

TAIR|locus:2097905 ROP10 "RHO-related protein from plants 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 167/208 (80%), Positives = 180/208 (86%)

Query:     1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
             MASSAS+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS NVV EG TVNLGL
Sbjct:     1 MASSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVVEGITVNLGL 60

Query:    61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
             WDTAGQEDYNRLRPLSYRGADVFVLAFSL+SRASYENV KKWIPELQH++PGVP+VLVGT
Sbjct:    61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGT 120

Query:   121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXX 180
             K+DLRED+HYL+DHPGL PVTT+QGEELRK IGA+YYIECSSKTQQNVKAVFDAA     
Sbjct:   121 KMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVI 180

Query:   181 XXXXXXXXXXXXQR---GCLLNVFCGRN 205
                         Q+   GCL N+ CG+N
Sbjct:   181 KPAVKQKEKKKKQKPRSGCLSNILCGKN 208

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 148/172 (86%), Positives = 160/172 (93%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK +  DHPG VP+TTAQGEELRKQIGA YYIECSSKTQ NVK VFDAA
Sbjct:   122 LRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAA 173

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 147/172 (85%), Positives = 161/172 (93%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRF+KCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G+TVNLGLWDT
Sbjct:     2 SASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK +  DHPG VP+TTAQGEELRKQIGA  YIECSSKTQ+NVKAVFDAA
Sbjct:   122 LRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 145/172 (84%), Positives = 159/172 (92%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK +  DHPG VP+TT QGEEL+K IG+  YIECSSKTQQNVKAVFDAA
Sbjct:   122 LRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 143/171 (83%), Positives = 159/171 (92%)

Query:     5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
             ASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTA
Sbjct:     2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query:    65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query:   125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             R+DK +  DHPG VP+TT QGEEL+K IG++ YIECSSKTQQNVKAVFDAA
Sbjct:   122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAA 172

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 145/172 (84%), Positives = 158/172 (91%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDT
Sbjct:     2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK +  DHPG VP+TTAQGEEL+K IGA  YIECSSKTQ+NVK VFDAA
Sbjct:   122 LRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 142/172 (82%), Positives = 161/172 (93%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANV+ +G T+NLGLWDT
Sbjct:     2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSLVS+ASYENV KKW+PEL+HY+PGVP++LVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK + A+HPG VP++TAQGEEL+K IGA  YIECS+KTQQNVKAVFDAA
Sbjct:   122 LRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAA 173

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 143/172 (83%), Positives = 157/172 (91%)

Query:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDT
Sbjct:     2 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 61

Query:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct:    62 AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 121

Query:   124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             LR+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAA
Sbjct:   122 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34145	RAC1B_DICDI	No assigned EC number	0.5885	0.8952	0.9690	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.7794	0.9285	0.9898	no	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6041	0.8857	0.9687	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.9344	0.8714	0.8511	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6041	0.8857	0.9687	yes	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8461	0.9761	0.9855	no	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.8587	0.8428	0.8984	no	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5543	0.8666	0.9528	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.8248	0.8428	0.8984	no	no
P40792	RAC1_DROME	No assigned EC number	0.5891	0.8714	0.9531	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.6041	0.8857	0.9687	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6041	0.8857	0.9687	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8551	0.9904	0.9674	yes	no
O82480	RAC7_ARATH	No assigned EC number	0.7463	0.9428	0.9473	no	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.7405	0.9761	0.9579	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.8192	0.8428	0.9030	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.7378	0.9619	0.9439	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.8033	0.8476	0.8855	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.8361	0.8428	0.8984	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8135	0.8428	0.9030	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5885	0.9047	0.9693	N/A	no
Q24816	RACC_ENTHI	No assigned EC number	0.5519	0.8523	0.9226	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7089	0.9	0.9043	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.8238	0.9190	0.9796	N/A	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8370	0.8476	0.9081	N/A	no
Q01112	CDC42_SCHPO	No assigned EC number	0.5537	0.8666	0.9479	yes	no
Q03206	RAC1_CAEEL	No assigned EC number	0.5815	0.8666	0.9528	yes	no
O76321	RECG_ENTHI	No assigned EC number	0.5519	0.8523	0.8994	N/A	no
Q38919	RAC4_ARATH	No assigned EC number	0.8352	0.8380	0.9025	no	no
Q35638	RHO1_PEA	No assigned EC number	0.8361	0.8428	0.8984	N/A	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8591	1.0	0.9813	yes	no
P0CY33	CDC42_CANAL	No assigned EC number	0.5543	0.8666	0.9528	N/A	no
P63001	RAC1_MOUSE	No assigned EC number	0.6041	0.8857	0.9687	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.8474	0.8428	0.8984	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.8418	0.8428	0.9030	no	no
Q38912	RAC3_ARATH	No assigned EC number	0.8222	0.8571	0.9090	no	no
Q39435	RAC1_BETVU	No assigned EC number	0.8587	0.8428	0.8984	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.8153	0.9285	0.9898	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0185 hypothetical protein (211 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-130
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-106
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-103
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-88
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	7e-86
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	7e-77
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	1e-74
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	5e-74
pfam00071	162	pfam00071, Ras, Ras family	9e-69
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-66
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-66
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	6e-57
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-54
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-51
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-49
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-41
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-40
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-39
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-38
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-37
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-35
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	7e-34
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-33
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-31
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	7e-31
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-31
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-29
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-29
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-29
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-29
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-29
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-27
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-27
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-26
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-25
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-25
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-24
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-24
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-24
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-24
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-24
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-24
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	2e-23
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-23
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-23
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-22
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-22
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-21
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-21
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-21
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-21
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-21
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-21
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-21
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-20
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-20
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-19
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-19
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-19
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-18
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-18
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	5e-18
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-18
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-16
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-16
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-16
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-15
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-14
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	3e-13
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-12
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-12
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	6e-12
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	4e-11
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	6e-10
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-09
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	1e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-05
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	4e-04

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  363 bits (934), Expect = e-130
 Identities = 152/173 (87%), Positives = 165/173 (95%)

Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67
           FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           DYNRLRPLSYRGADVF+LAFSL+S+ASYENVLKKWIPEL+HY+PGVP+VLVGTKLDLR+D
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           K + ADHPG VP+TTAQGEELRKQIGA+ YIECSSKTQQNVKAVFDAAIKVV+
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  301 bits (774), Expect = e-106
 Identities = 101/174 (58%), Positives = 129/174 (74%), Gaps = 2/174 (1%)

Query: 11  CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN 70
            V VGDGAVGKTC+LI YT+N FP DY+PTVF+N+SA+V  +G  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 71  RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 130
           RLRPLSY   DVF++ FS+ S AS+ENV +KW PE++H+ P VP++LVGTKLDLR DK  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 131 LAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           L +       PVT  QG+ L K+IGA  Y+ECS+ TQ+ V+ VF+ AI+  +  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  294 bits (756), Expect = e-103
 Identities = 105/171 (61%), Positives = 133/171 (77%), Gaps = 1/171 (0%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IK V VGDGAVGKTC+LI YT+NKFPT+Y+PTVFDN+SANV  +G  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF+L FS+ S +S+ENV  KW PE++HY P VP++LVGTK+DLR+D 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 129 HYLADH-PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           + L        P+T  +GE+L K+IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  257 bits (658), Expect = 2e-88
 Identities = 108/173 (62%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  251 bits (644), Expect = 7e-86
 Identities = 96/193 (49%), Positives = 128/193 (66%), Gaps = 3/193 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-VAEGTTVNLGLWDTAGQE 67
           +K V VGDG  GKTC+L+ Y    FP +Y+PTVF+N+   + V  G  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           DY+RLRPLSY   DV ++ +S+ +  S +NV  KW PE+ H+ PG P+VLVG K DLR+D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 128 KHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
           K+ ++     GL PVT  QGE + K IGA  YIECS+K  +NV  VFDAAI V +    +
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 186 QKEKKKKQRGCLL 198
              KKKK++ C++
Sbjct: 184 AARKKKKKKKCVI 196

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  228 bits (583), Expect = 7e-77
 Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LICYT+N FP +YIPTVFDN+SA    +G TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLR LSY   +VF++ FS+ S +SYENV  KW PE+ H+ P VP++LVGTK DLR D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
             L      G  P+T  QG  L KQI A  Y+ECS+  Q  VK VF  A++ V+ P   +
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183

Query: 187 KEKK 190
             K 
Sbjct: 184 DTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  222 bits (567), Expect = 1e-74
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 2/170 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
             +         P+T   GE+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  221 bits (564), Expect = 5e-74
 Identities = 86/170 (50%), Positives = 126/170 (74%), Gaps = 2/170 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +KCV VGDGAVGKT +++ YT+N +PT+Y+PT FDNFS  V+ +G  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +++LRPL Y   DVF+L FS+V+ +S++N+ +KWIPE++ ++P  P++LVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
           + L      G  PV+ ++ + L ++IGA  YIECS+ TQ+N+K VFD AI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  206 bits (528), Expect = 9e-69
 Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V VGDG VGK+ +LI +T NKFP +YIPT+  D ++  +  +G TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLRED 127
           +  LRPL YRGA  F+L + + SR S+ENV KKW+ E+  ++   VP+VLVG K DL + 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V+T +GE L K++G   ++E S+KT +NV+  F+   + ++K
Sbjct: 120 R----------VVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  201 bits (514), Expect = 2e-66
 Identities = 83/170 (48%), Positives = 119/170 (70%), Gaps = 2/170 (1%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
            + +       PV   +G  + ++IGA  Y+ECS+KT++ V+ VF+ A +
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  201 bits (513), Expect = 2e-66
 Identities = 91/174 (52%), Positives = 131/174 (75%), Gaps = 2/174 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DLR+D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
             LA  +     P+T  QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  ++
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  178 bits (452), Expect = 6e-57
 Identities = 79/187 (42%), Positives = 113/187 (60%), Gaps = 2/187 (1%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKT +L  +T  +FP +Y PTVF+N+  +   +G  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
            RLRPLSY  A V ++ F++ +  S ENV  KWI E++ Y P VPV+LVG K DLR++  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEK 189
              ++     V   Q + + + IGA  Y+ECS+ T + V  VF+AA +  +    ++  K
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALL--VRKSGK 180

Query: 190 KKKQRGC 196
           ++    C
Sbjct: 181 EEPGANC 187

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  170 bits (432), Expect = 6e-54
 Identities = 71/170 (41%), Positives = 106/170 (62%), Gaps = 3/170 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E++ + P  PV+LVG K DLR D 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAA 175
             L +  +   +PV+  QG  L KQIGA+ Y+ECS+KT +N V+ VF+ A
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  162 bits (411), Expect = 8e-51
 Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++  +G  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLR LSY    V +L FS+ +  S ENV  KW+ E++H+ PGV +VLV  K DLRE ++
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD--AAIKVVIKPPQKQK 187
                     ++  +G  + K+I A  Y+ECS+K  + V   F   A + +  +PP    
Sbjct: 122 ERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPPHPHS 179

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  156 bits (398), Expect = 6e-49
 Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
            K V +GD  VGKT +L+ +  NKF  +Y  T+  +F S  +  +G  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + + +R S+EN+  KW+ EL+ Y  P +P++LVG K DL +
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           ++           V+T + ++  K+ G  ++ E S+KT +NV   F++  +
Sbjct: 120 ERQ----------VSTEEAQQFAKENGLLFF-ETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  137 bits (348), Expect = 2e-41
 Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
            K + +GD  VGK+ +L  +T  KF   Y  T+  +F    +  +G  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + + +R S+EN+ + W+ EL+ Y+ P V ++LVG K DL E
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +           V+  + E   ++ G   + E S+KT  NV+  F+   + ++K
Sbjct: 120 QRQ----------VSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  139 bits (350), Expect = 3e-41
 Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 3/189 (1%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT +L  +  + +P  Y+PTVF+N++A+   +   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPL+Y  +D  ++ F +    + ++VLKKW  E Q + P   +VLVG KLD+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIKPPQKQ 186
            L +     L+PVT  QG  L +Q+GA  Y+ECSS+  +N V+ VF       ++     
Sbjct: 123 TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHPS 182

Query: 187 KEKKKKQRG 195
            ++   +RG
Sbjct: 183 LKRSTSRRG 191

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  135 bits (342), Expect = 5e-40
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 8/204 (3%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWD 62
              +  K V +GDG VGKT +L     ++FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTK 121
           TAGQE+Y  LRP  YRGA+  ++ +    R S + + ++W+ EL+      VP++LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 122 LDLRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAA 175
           +DL ++    +  L      V +     + +  ++     +E S+K  T  NV  +F   
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 176 IKVVIKPPQKQKEKKKKQRGCLLN 199
           ++ +++  +K   K + ++   LN
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  133 bits (335), Expect = 2e-39
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 3/169 (1%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 130 YLADHPG--LVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAA 175
            L +       PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  129 bits (328), Expect = 2e-38
 Identities = 57/173 (32%), Positives = 96/173 (55%), Gaps = 20/173 (11%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + I + S +F  +Y PT+ D++   +V +G T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL--- 124
           + +R    R  D F+L +S+ SR S+E +  +++ I  +      VP+VLVG K DL   
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV-KDKEDVPIVLVGNKCDLENE 119

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           R+             V+T +GE L ++ G   ++E S+KT  N+  +F+  ++
Sbjct: 120 RQ-------------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  128 bits (323), Expect = 4e-37
 Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 3/188 (1%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPL Y  +D  +L F +     +++ LKKW  E+  Y P   ++L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIKVVIKPPQKQ 186
            L +  +    P++  QG  + KQ+GA  Y+ECS+ T ++++ ++F  A  + I      
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 187 KEKKKKQR 194
            +K   + 
Sbjct: 195 AKKSPVRS 202

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 14/174 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
            K V +G+G VGKT +++ Y  NKF   +  T   +F    V   G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            Y+ L P+ YR AD  +L + +    S++ V KKWI EL+      + +V+VG K+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
            +           V+ ++ EE  K +GA ++ E S+KT + ++ +F +  K +I
Sbjct: 120 QRV----------VSKSEAEEYAKSVGAKHF-ETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  118 bits (298), Expect = 7e-34
 Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + I +    F  DY PT+ D++   +  +G    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+L +S+  R S+E     ++ I  ++     VP+VLVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V+T +G+EL +Q G   ++E S+K + NV   F   ++ + K
Sbjct: 121 RV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  117 bits (295), Expect = 2e-33
 Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + I +    F  +Y PT+ D++   +  +G    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+L +S+  R S+E +   ++ I  ++     VP+VLVG K DL  +
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKCDLENE 122

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           +           V+T +G+EL +Q G   ++E S+K + NV   F   ++ + K 
Sbjct: 123 RV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  111 bits (279), Expect = 4e-31
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 20/169 (11%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
            K + +GD  VGK+C+L+ ++ + F   +I T+  +F    +  +G  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 68  DYNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 123
              R R ++   YRGA   +L + +    S+EN+ K W+  + +H S  V  +LVG K D
Sbjct: 64  ---RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCD 119

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           + E +           V+  +GE L ++ G  +  E S+K   NV+  F
Sbjct: 120 MEEKRV----------VSKEEGEALAREYGIKFL-ETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  111 bits (279), Expect = 7e-31
 Identities = 78/194 (40%), Positives = 103/194 (53%), Gaps = 28/194 (14%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYI------PTVF--DNF--------SANVVAE 52
           IKCV VGD AVGKT ++     NK  T Y       PTV+  D +         +  V +
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 53  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 112
           G +V+L LWDT G  D+++ R  +Y  +DV +L FS+ S  S  NV   W PE++H+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 113 VPVVLVGTKLDLRE---DKHYLADHPGLVPVTTA------QGEELRKQIGASYYIECSSK 163
           VPV+LVG KLDLR    D+   A  P   P+  A       G  + K++G  YY E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY-ETSVV 179

Query: 164 TQQNVKAVFDAAIK 177
           TQ  VK VFD AI+
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  110 bits (277), Expect = 8e-31
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQ 66
           IK V VGD  VGK+ +L     NK   T+Y P    N+   V+ E G T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSP-GVPVVLVGTKLDL 124
           EDY+ +R L YR  +  +  F +V      E +L+K   E+ H++  GVP++LVG K+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           R+ K           + T       K  G    I  S++T +N+ + F 
Sbjct: 122 RDAK-----------LKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  109 bits (275), Expect = 1e-30
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 16/167 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  +  +  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 69  YNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLRE 126
           +  L P SY R + V V+ + + +R S++N   KWI +++      V +VLVG K DL +
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            +           V+T +GE+  K+  A  +IE S+K   NVK +F 
Sbjct: 120 KRQ----------VSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  108 bits (271), Expect = 6e-30
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVVAEGTTVNLGLWDTAG 65
           IK + VG+G VGK+ M+  +    F  DY  T+  +F      +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125
           QE+++ +    YRGA   +L FS   R S+E + + W  +++     +P+VLV TK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           +             +T  + E L K++    +   S K   NV  +F+
Sbjct: 120 DQ----------AVITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  107 bits (269), Expect = 1e-29
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 16/168 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
           +K + +GD  VGK+ +L+ +T + F  D   T+  +F    V  +G  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLR 125
            +  L    YRGA   +L + +  R +++N L  W+ EL  YS  P    +LVG K+D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDN-LDTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
                         VT  +G++  ++     +IE S+KT+  V+  F+
Sbjct: 120 N-----------REVTREEGQKFARKHNM-LFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  107 bits (269), Expect = 1e-29
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 14/167 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K V +GD +VGK+ +++ +  N+F  +   T+   F    V  + TTV   +WDTAGQE 
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRED 127
           Y  L P+ YRGA   ++ + + S  S+E   K W+ ELQ H  P + + L G K DL   
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLESK 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
           +           V+T + +E   + G   ++E S+KT +NV  +F  
Sbjct: 122 RQ----------VSTEEAQEYADENGL-LFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  107 bits (269), Expect = 1e-29
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 15/165 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ SR S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       V+T QG++L K  G   YIE S+KT+Q V+  F
Sbjct: 122 T-----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  106 bits (267), Expect = 3e-29
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL + 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K           V   + +E   ++G   ++E S+K   NV+  F
Sbjct: 123 K----------VVDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  106 bits (267), Expect = 3e-29
 Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 17/199 (8%)

Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
           AS   K V VG G VGK+ + I +  N F  +Y PT+ D++    V +  T  L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLVGTKL 122
           GQE+Y+ +R    R    F+  +S+ SR+S+E     ++ I  ++     VP++LVG K 
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKC 120

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV--- 179
           DL  ++           V+T +G+EL K  G   ++E S+K + NV   F   ++ +   
Sbjct: 121 DLDSERQ----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVREIRKY 169

Query: 180 IKPPQKQKEKKKKQRGCLL 198
           +K     +++KKK   CL+
Sbjct: 170 LKEDMPSQKQKKKGGLCLI 188

Length = 189

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  101 bits (252), Expect = 6e-27
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 25/186 (13%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----------SANVVAEGTTVN 57
           IK + +GD  VGKT  L  YT NKF   +I TV  +F                 +   V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 58  LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVPV 115
           L LWDTAGQE +  L    +R A  F+L F L S  S+ NV + W+ +LQ   Y     +
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           VL+G K DL + +           V+  Q  EL  + G   Y E S+ T QNV+   +  
Sbjct: 124 VLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETL 172

Query: 176 IKVVIK 181
           + +++K
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  101 bits (252), Expect = 6e-27
 Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 28/203 (13%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +GDG VGKT + I    N F   Y PT+ D++   VV +G    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVVLVGTKLDLR 125
             LR    R  + F+L +S+ SR+++E V +++  ++Q      +  VP+++VG K D  
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
            ++           V+T +G  L +++G   +IE S+KT  NV+  F   ++ + +  Q+
Sbjct: 120 YERE----------VSTEEGAALARRLG-CEFIEASAKTNVNVERAFYTLVRALRQ--QR 166

Query: 186 Q----------KEKKKKQRGCLL 198
           Q          K+K+KK+R C++
Sbjct: 167 QGGQGPKGGPTKKKEKKKRKCVI 189

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 99.2 bits (248), Expect = 2e-26
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 20/187 (10%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +  +G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG---VPVVLVGTKLDLRE 126
           + L      G   ++L +S+ SR S+E V  K I +      G   VP+VLVG K DL  
Sbjct: 63  SILPQKYSIGIHGYILVYSVTSRKSFEVV--KVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI----KVVIKP 182
           ++           V+  +G++L +  GA+ ++E S+K  +NV+  F+  I    KV    
Sbjct: 121 ERQ----------VSAEEGKKLAESWGAA-FLESSAKENENVEEAFELLIEEIEKVENPL 169

Query: 183 PQKQKEK 189
           P  QK K
Sbjct: 170 PPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 97.5 bits (243), Expect = 1e-25
 Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 14/175 (8%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
              K V VG G VGK+ + I +  + F TDY PT+ D+++     +G    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK--KWIPELQHYSPGVPVVLVGTKLDL 124
           E+++ +R    R  + F+L FS+  R S+E V K    I  ++      P++LVG K DL
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDE-FPMILVGNKADL 119

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
              +           V+  +G+EL +Q+    YIE S+K + NV   F   ++V+
Sbjct: 120 EHQRQ----------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 96.1 bits (239), Expect = 4e-25
 Identities = 59/180 (32%), Positives = 93/180 (51%), Gaps = 18/180 (10%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTA 64
           S  +K + +GDG VGK+ ++  Y +NKF T    T+   F + ++  +G  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVG 119
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P V++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 121

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 95.6 bits (238), Expect = 1e-24
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 12  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV--AEGTTVNLGLWDTAGQEDY 69
           + +GD  VGK+ +L  +T  +F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPV-VLVGTKLDLRED 127
             +    YR +   +L F + +R S+E+V   W+ E + H  P  PV +LVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           VT  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLGMK-YIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 94.7 bits (236), Expect = 1e-24
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 17/178 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K + +GD  VGKT ++  Y + KF   Y  T+  D  +  V  +   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVGTKLD 123
           +  L    YRGAD  VL + + +  S+E+ L  W  E L   SP      P V++G K+D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFES-LDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           L E+K           V+T + ++  K  G   Y E S+K   NV   F+   ++ ++
Sbjct: 121 L-EEKR---------QVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 94.2 bits (235), Expect = 2e-24
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68
           K V +GD  VGK+ +L  +T N+F  D   T+   F+   +  +G T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLRED 127
           Y  +    YRGA   +L + +  ++++ENV ++W+ EL+ ++   + ++LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V T + +   ++ G S +IE S+    NV+  F
Sbjct: 124 RA----------VPTEEAKAFAEKNGLS-FIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQ 66
           +K V +G  +VGKT ++  Y  ++F    Y  T+   F A  +V     V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
           E Y  +  + YRGA   ++ + L   +S+E   K W+ ELQ+      + L GTK DL E
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                     L  V     ++   +I A ++ E SSKT QNV  +F
Sbjct: 120 QDR------SLRQVDFHDVQDFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 93.3 bits (232), Expect = 4e-24
 Identities = 49/174 (28%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + +  R ++ + L  W+ +  QH +  + ++L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V+  +GE   ++ G   ++E S+KT  NV+  F    K +  
Sbjct: 125 RE----------VSYEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 92.9 bits (231), Expect = 5e-24
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 14/172 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K + +G    GK+C+L  +  NKF  D   T+   F + VV   G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + + SR S+ N L  W+ + +   SP + ++LVG K DL +D
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESF-NALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
           +           VT  +     ++ G   ++E S+ T +NV+  F    + +
Sbjct: 121 RE----------VTFLEASRFAQENGL-LFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 91.7 bits (228), Expect = 2e-23
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGKTC++  + S  F      T+  +F+   +  +G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YR A+  ++A+ +  R+S+E+V   WI E++ Y +  V ++L+G K DL E 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V   +   L +  G    +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 91.2 bits (226), Expect = 2e-23
 Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 14/161 (8%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRL 72
           +GD  VGKTC+L  +T N+F + +I T+  +F    +  +G  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 73  RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYL 131
               YR A    L + + S  SY++++ KW+ ++  Y+P GV  +L+G K D  + +   
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 132 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   V   QG +L K+ G  ++ E S+ T +N+K  F
Sbjct: 123 --------VGDEQGNKLAKEYGMDFF-ETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 90.7 bits (225), Expect = 3e-23
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQED 68
           K + +G+ +VGKT  L  Y  + F + ++ TV  +F    V      + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127
           Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D+ ++
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
           +           V+  +G +L  Q+G  ++ E S+K   NVK VF+  + ++
Sbjct: 122 R----------VVSAERGRQLADQLGFEFF-EASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDK 128
             +R   +R  + F+L FS+    S+  + +     L+      VP++LVG K DL + +
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                      V+  +   L +Q G + Y+E S+KT+ NV  VF
Sbjct: 122 Q----------VSVEEAANLAEQWGVN-YVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 90.0 bits (223), Expect = 2e-22
 Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 17/187 (9%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWD 62
           S +   K + +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +   + L +WD
Sbjct: 2   SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWD 61

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTK 121
           TAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K
Sbjct: 62  TAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNK 120

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            DL    H  A       V+T +GE+  K+ G   ++E S+KT QNV+   +A IK   K
Sbjct: 121 CDL---AHRRA-------VSTEEGEQFAKEHGL-IFMEASAKTAQNVE---EAFIKTAAK 166

Query: 182 PPQKQKE 188
             +K ++
Sbjct: 167 IYKKIQD 173

Length = 210

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + +  N F   Y PT+ D++   V  +G   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R L  +    F+L +S+ S AS   +  L++ +  ++  S  VP+VLVG K DL +D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           +           V+   G  L +Q G   + E S++ + NV  VF   ++ +I
Sbjct: 122 RQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 19/173 (10%)

Query: 12  VTVGDGAVGKTCML--ICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           V VG G VGK+ +L  +        +D   T  D        +   V L L DT G +++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 70  NRLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
             L       L  RGAD+ +L      R S E+     +  L     G+P++LVG K+DL
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRL--RKEGIPIILVGNKIDL 118

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
            E++           V      E   +I      E S+KT + V  +F+  I+
Sbjct: 119 LEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 19/187 (10%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G G VGK+ + + + S+ FP  + PT+ D +      +     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
            ++  +R    R  + F++ +S+  R S++     K+ I  ++  +  +P+VLVG K+DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDL 119

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184
            + +           VTT +G  L ++    ++ E S+  +  +   F   ++ +     
Sbjct: 120 EQQRQ----------VTTEEGRNLAREFNCPFF-ETSAALRFYIDDAFHGLVREI----- 163

Query: 185 KQKEKKK 191
           ++KE   
Sbjct: 164 RRKESMP 170

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 86.8 bits (215), Expect = 2e-21
 Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
           K + VGD  VGKTC+L+ +    F    +I TV   F+  VV  +G  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YR A   +L + + +++S++N+ + W+ E+  Y    V ++L+G K     
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNK----- 115

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
                AD  G   V    GE L K+ G   ++E S+KT  NV+  F A  K
Sbjct: 116 -----ADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+ +L+ + S+    D  PT+  +F    +   G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVGTKLDLRE 126
           +  L    YR A   +L + +  R ++ N+   W  E++ YS     V  LVG K+D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA-AIKVVIKP 182
           ++           V+  +G  L K+ G   ++ECS+KT++NV+  F+  A+K++  P
Sbjct: 135 ER----------DVSREEGMALAKEHGCL-FLECSAKTRENVEQCFEELALKIMEVP 180

Length = 211

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 45/170 (26%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + + S  F   Y PT+ D +   +  + +   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R L  +    F++ +SLV++ +++++  ++  I  ++ Y   VP++LVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           +           V++A+G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 122 RE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 85.0 bits (211), Expect = 5e-21
 Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 20/177 (11%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED- 68
           K   +G   VGK+ + + + + +F  +Y P +   +S  V  +G  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 69  ---YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLD 123
               +  R L  R AD FVL +S+  R+S++ V  L + I E++     +PV+LVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS-SKTQQNVKAVFDAAIKVV 179
           L   +           V+T +G++L  ++G  ++ E S ++    V+ VF    + V
Sbjct: 119 LLHSRQ----------VSTEEGQKLALELGCLFF-EVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 85.3 bits (211), Expect = 5e-21
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K V +G+  VGKTC++  +T   FP     T+  +F    V  +G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YR A+  +L + +    S+   L +W+ E++ Y +  V  +LVG K+DL E 
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFR-CLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V+  + EE        YY+E S+K   NV+ +F
Sbjct: 128 RE----------VSQQRAEEFSDA-QDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + +    F   Y PT+ D++   V  +G    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R L  +    FVL +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL ++
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V   QG+ L +Q G   ++E S+K + NV  +F   ++ + +
Sbjct: 122 R----------VVGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 84.1 bits (208), Expect = 2e-20
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 15/188 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+ +L+ +  N F   YI T+  +F    V   G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  +    YRG    ++ + + +  S+ NV K+W+ E++     V  VLVG K       
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNK------- 119

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI--KPPQKQ 186
               D P    V T    +   Q+G S + E S+K   NV+ +F+   ++V+  K     
Sbjct: 120 ---NDDPERKVVETEDAYKFAGQMGISLF-ETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 187 KEKKKKQR 194
           K+++++Q 
Sbjct: 176 KQQQQQQN 183

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----FDNFSANVVAEGTTVNLGLWDT 63
            K V VGDG  GKT  +  + + +F   Y+ T+       +F  N       +   +WDT
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN----RGKIRFNVWDT 56

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQE +  LR   Y      ++ F + SR +Y+NV   W  +L      +P+VL G K+D
Sbjct: 57  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVD 115

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +++ K           V   Q    RK+     Y E S+K+  N +  F
Sbjct: 116 IKDRK-----------VKPKQITFHRKKN--LQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 45/165 (27%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + +    F   Y PT+ D++   +  +     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R L  +    F L +S+ ++ S+ ++  L++ I  ++     VP++LVG K DL ++
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNKCDLEDE 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V+  +G+ L +Q G   ++E S+K++ NV  +F
Sbjct: 122 RV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 80.7 bits (199), Expect = 2e-19
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L  +T  KF  D   T+   F   ++   G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   ++ + +  R++Y N L  W+ + ++  +P   + L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           VT  + ++   + G   ++ECS+KT +NV+  F
Sbjct: 123 RD----------VTYEEAKQFADENGL-LFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K V +GD  VGK+ +L  +T N+F  +   T+   F+   +  EG TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR-- 125
           Y  +    YRGA   +L + +  R +++NV  +W+ EL+ H    + +++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 126 -----EDKHYLADHPGL 137
                ED   LA+  GL
Sbjct: 133 RSVAEEDGQALAEKEGL 149

Length = 216

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 78.8 bits (194), Expect = 1e-18
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 13/166 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED 68
           K + VGD +VGKTC++  +  + F  +Y  T+  +F        G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPG-VPVVLVGTKLDLRE 126
           +  +    YRGA   ++ F L   AS E+  ++W+ + L+   P  V + LVGTK DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   P    +      +L +++ A Y+   S+ T +NV+  F
Sbjct: 121 --------PAQYALMEQDAIKLAREMKAEYW-AVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 16/174 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT-VFDNFSANVVAEGTTVNLGLWDTAGQE 67
           +K + +GD AVGK+ ++  +  + +    + T     +  N   EG T+ +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    Y  A   +L F +  + +Y+N L KW  EL+ Y P +P ++V  K+DL   
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKN-LSKWYEELREYRPEIPCIVVANKIDLD-- 117

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                      P  T +     ++     Y   S+    NV  +F  AIK+ + 
Sbjct: 118 -----------PSVTQKKFNFAEKHNLPLYY-VSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAG 65
           R  K + +GD  VGKTC+   + + +FP     T+  +F    V  +G  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 66  QEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKL 122
           QE + + +    YR     V  + + + AS+ + L  WI E + +S    VP +LVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLPNEVPRILVGNKC 119

Query: 123 DLRE 126
           DLRE
Sbjct: 120 DLRE 123

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 77.2 bits (190), Expect = 5e-18
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 19/171 (11%)

Query: 10  KCVTVGDGAVGKT--CMLICYTSNKFPTDYIPTVFDNFSANVV---AEGTTVNLGLWDTA 64
           +C  VGD AVGK+    +       F  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV--PVVLVGTKL 122
           GQE ++ +    +    V  + + + +  S+ N   +WI  ++ +S G+  P VLVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVGNKC 120

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           DL + +           V  AQ + L +     +Y E S+K     +A F 
Sbjct: 121 DLTDRRE----------VDAAQAQALAQANTLKFY-ETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 77.7 bits (192), Expect = 6e-18
 Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 32/209 (15%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV--VAEGTTVNLGLWDTAGQE 67
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V      T V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HYSPG--VPVVLVGTKL 122
            +  +  + Y+GA   ++ F +   +++E VL KW  +L        G  +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL-KWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK- 181
           DL++++               Q ++  K+ G   + E S+K   N++      +K ++K 
Sbjct: 121 DLKKERLA---------KDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKN 171

Query: 182 --------PPQ------KQKEKKKKQRGC 196
                   P +      KQ+    K + C
Sbjct: 172 DKGLQSPEPDEDNVIDLKQETTTSKSKSC 200

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 75.5 bits (186), Expect = 6e-17
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-----FSANVVAEGTT 55
                  F K + VGDG VGKT  +  + + +F   YIPT+        F  N       
Sbjct: 3   QMDEVPEF-KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN----CGP 57

Query: 56  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115
           +   +WDTAGQE +  LR   Y      ++ F + SR +Y+NV   W  ++      +P+
Sbjct: 58  ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPI 116

Query: 116 VLVGTKLDLREDK 128
           VLVG K+D+++ +
Sbjct: 117 VLVGNKVDVKDRQ 129

Length = 215

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 13/163 (7%)

Query: 12  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYN 70
           + +G   VGKT ++  +T + F      TV  +F    V   G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 71  RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKH 129
            +    YR A   +L + +  + ++++ L KW+  +  Y S    ++LVG KLD   D+ 
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                     +T  QGE+  +QI    + E S+K   NV  +F
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 22/181 (12%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGTTVNLGLWDTAGQ 66
           ++ V +GD  VGK+ +++   S +FP + +P V    +  A+V  E     +   DT+ +
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTI--VDTSSR 59

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
                      R A+V  L +S+   ++ E +  KW+P ++     VP++LVG K DLR+
Sbjct: 60  PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 119

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASY-----YIECSSKTQQNVKAVFDAAIKVVIK 181
                           A  EE    I   +      +ECS+KT  NV  VF  A K V+ 
Sbjct: 120 GSS------------QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 167

Query: 182 P 182
           P
Sbjct: 168 P 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 71.3 bits (175), Expect = 3e-16
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED 68
           K V +GD   GK+ +L      +FP + +    D  + + +  +G T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 122
                 +  + AD  +L + L  R S   V  L  W+P L+     +PV+LVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 71.2 bits (175), Expect = 9e-16
 Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 19/180 (10%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           IK +++G+  VGK+C++  Y   +F + Y+PT+  D     V      V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG------VPVVLVGTK 121
           +Y  +R   Y+     +L + +  R S+E  L  W+ E++           + VV+   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +DL + +           V+  +G    +  G  Y+ E S+ T + V  +F      ++ 
Sbjct: 120 IDLTKHRA----------VSEDEGRLWAESKGFKYF-ETSACTGEGVNEMFQTLFSSIVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 72.2 bits (177), Expect = 1e-15
 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 26/201 (12%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +K V +GD  VGKT +L  Y   +F  D + TV   F    + +    N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           ++ L  +  RGA   +L + + +  S E +  +++      +      +VG KLDL E+ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 129 HYLADHPGLVP---------VTTAQGEELRKQI-------------GASYYIECSSKTQQ 166
                               VT    +   K+I                   E S+KT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 167 NVKAVFDAAIKVVIKPPQKQK 187
           NV  +F+    +V+     Q+
Sbjct: 177 NVDELFEYLFNLVLPLILAQR 197

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 69.8 bits (171), Expect = 9e-15
 Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----FDNFSANVVAEGTTVNLGLWDT 63
            K V VGDG  GKT  +  + + +F   Y PT+       +F  N       +    WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----GKIRFYCWDT 69

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQE +  LR   Y      ++ F + +R +Y+NV   W  +L      +P+VL G K+D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128

Query: 124 LREDK 128
           ++  +
Sbjct: 129 VKNRQ 133

Length = 219

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 19/184 (10%)

Query: 8   FIKCVTVGDGAVGKTCMLICYT--SNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
            +K + VGD  VGK  +L      S + P  Y   + D  +  ++ +G  V L LWDT+G
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGI-DYKTTTILLDGRRVKLQLWDTSG 64

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125
           Q  +  +     RGA   +L + + +R S++ +  +WI E+  ++PGVP +LVG +L L 
Sbjct: 65  QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLA 123

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI----K 181
             +           V T Q +   ++ G +++ E S     N+   F    ++V+    +
Sbjct: 124 FKRQ----------VATEQAQAYAERNGMTFF-EVSPLCNFNITESFTELARIVLMRHGR 172

Query: 182 PPQK 185
           PPQ 
Sbjct: 173 PPQS 176

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 2/117 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
           +K   +GD  +GKT +++ Y   +F  +YI T+  NF    +   GT +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
           ++  + PL  + A   +  F L  +++  ++ K+W  + + ++     +LVGTK DL
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDL 116

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---FDNFSANVVAEGTTVNLGLWDTAG 65
            K + VG G VGKT +       KF  D   T      ++      E   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125
           QE Y+           +++L F L       + +  W+ +++ +    PV+LVGT +D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDL-RTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 126 ED---------KHYLADHPGLVPVTTAQG---EELRKQI 152
            D         K + A    +  V+   G    EL+K I
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAI 158

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 20/169 (11%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           + V  G G VGK+ +++ +    F   YIPT+ D +   +    +   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKW--IPELQ-HYSPGVPVVLVGTKLD--- 123
             ++ LS      F+L +S+ S+ S E +   +  I E++ +    +P++LVG K D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            RE             V++++G  L +    + ++E S+KT  NV+ +F
Sbjct: 123 SRE-------------VSSSEGAALARTWNCA-FMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 12  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR 71
           V +G   VGKT ++  +   +F   Y PT+ D         G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 72  LRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQ-------HYSPGVPVVLVGTKL 122
           +R LS    DVF+L FSL +R S+E V  L++ I E +         +  +P+V+ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
           D    +           V   + E+L        Y E S+K   N+  +F A
Sbjct: 124 DRDFPRE----------VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 13/165 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           + V +G   VGKT ++  +  + F   +  TV +  S      G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R LS +  D F L +S+    S+E V  L++ I E++     VP+V+VG K+D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKE-DKFVPIVVVGNKIDSLAE 119

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +   A              EL    G   ++E S+K  +NV  VF
Sbjct: 120 RQVEAA-------DALSTVELDWNNG---FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 62.0 bits (150), Expect = 6e-12
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRL 72
           VGDG  GKT  +  + + +F   Y+ T+  +            +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 73  RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           R   Y      ++ F + +R +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 17/155 (10%)

Query: 31  NKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 89
           + F  +Y  T+  D  S  +  +   V L LWDTAGQE +  L P   R +   ++ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 90  VSRASYENVLKKWIPE-LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 148
            +R S+EN   KWI + L      V + LVG K DL +          L  VT  +G + 
Sbjct: 63  TNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGD----------LRKVTYEEGMQK 111

Query: 149 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
            ++    ++ E S+K   N+K +F    K+  K P
Sbjct: 112 AQEYNTMFH-ETSAKAGHNIKVLFK---KIAAKLP 142

Length = 176

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 30/197 (15%)

Query: 10  KCVTVGDGAVGKTCM-LICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           + V +GD  VGK+ +  I        + Y  +  D +   V  +G    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ------HYSPGVPVVLVGTKL 122
              L     +  D +V+ +S+  R+S+E        EL+        +  +P++LVG K 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKA-----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 123 DL---REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
           DL   RE             V+  +G           +IE S+  Q NV  +F+  ++ V
Sbjct: 117 DLVRSRE-------------VSVQEGRACAVVFDCK-FIETSAALQHNVDELFEGIVRQV 162

Query: 180 IKPPQKQKEKKKKQRGC 196
            +  +  KEK  ++   
Sbjct: 163 -RLRRDSKEKNTRRMAS 178

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGT-TVNLGLWDTAGQ 66
           IK V +GDGA GKT ++  +    F   Y  T+  D FS  +   G+  V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPGVP-VVLVGTKL 122
           +   ++      GA    L + + +  S+EN L+ W   + ++   S   P +VLVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFEN-LEDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 123 DLREDKHYLAD 133
           DL  ++   A+
Sbjct: 120 DLEHNRQVTAE 130

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 18/119 (15%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR 73
           VG    GKT ++    S +F  D IPTV   F+   V +G  V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKG-NVTIKVWDLGGQP---RFR 58

Query: 74  PL--SY-RGADVFVLAFSLVSRASYE---NVLKKWI--PELQHYSPGVPVVLVGTKLDL 124
            +   Y RG +  V       R   E   N L   +  P L+    G+P++++G K DL
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLE----GIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 24/179 (13%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWD---------T 63
           +G   VGKT ++  + + +FP +YIPT     +   VV  G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHY-SPGVPVVLVGT 120
           AGQE +   R    R +  F+L + + S  S+  V  L++ I E +   +   P+V+VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
           K D +  +H  A    L          L ++     Y+ECS+K   ++  +F   +   
Sbjct: 125 KRDQQ--RHRFAPRHVL--------SVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 31/195 (15%)

Query: 12  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDY 69
           V +G  + GKT +L     N+F  + +PT   N     V+ G    V    WD  GQE  
Sbjct: 7   VMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE-- 63

Query: 70  NRLRPL--SY-RGAD--VFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTK 121
            +LRPL  SY R  D  VFV+    V R   A  E        E Q    GVPV+++  K
Sbjct: 64  -KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQ----GVPVLVLANK 118

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS--YYIE-CSSKTQQNVKAVFDAAIKV 178
            DL          P  +PV+  +      ++ +S  ++++   +   + ++   +   ++
Sbjct: 119 QDL----------PNALPVSEVEKLLALHELSSSTPWHVQPACAIIGEGLQEGLEKLYEM 168

Query: 179 VIKPPQKQKEKKKKQ 193
           ++K  +  +++KKK+
Sbjct: 169 ILKRRKMLRQQKKKR 183

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 20/169 (11%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR 73
           VG+   GK+ ++  Y +  +     P     F   V+ +G +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 74  PLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHY 130
              + G  D  +  FSL   AS++ V  +   +L  Y     +P++LVGT+         
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ------DAI 111

Query: 131 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF-DAAIKV 178
            A +P +  +  A+  +L   +    Y E  +    NV+ VF +AA K+
Sbjct: 112 SASNPRV--IDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
PLN03118	211	Rab family protein; Provisional	99.98
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.98
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.98
PLN00223	181	ADP-ribosylation factor; Provisional	99.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
PTZ00099	176	rab6; Provisional	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.89
PRK15494	339	era GTPase Era; Provisional	99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.87
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.87
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
PRK11058	426	GTPase HflX; Provisional	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.86
PRK00089	292	era GTPase Era; Reviewed	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.84
PRK12298	390	obgE GTPase CgtA; Reviewed	99.84
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
PRK12296	500	obgE GTPase CgtA; Reviewed	99.83
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.83
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
COG1159	298	Era GTPase [General function prediction only]	99.82
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.81
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.81
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.81
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
PRK12317	425	elongation factor 1-alpha; Reviewed	99.8
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.8
COG2229	187	Predicted GTPase [General function prediction only	99.79
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.77
PRK04004	586	translation initiation factor IF-2; Validated	99.77
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.76
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.76
PRK10218	607	GTP-binding protein; Provisional	99.75
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.75
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.74
COG0486	454	ThdF Predicted GTPase [General function prediction	99.74
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.74
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.73
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.73
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.73
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.73
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.73
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.71
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.71
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.69
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.69
COG2262	411	HflX GTPases [General function prediction only]	99.69
PRK12736	394	elongation factor Tu; Reviewed	99.68
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.67
PRK12735	396	elongation factor Tu; Reviewed	99.67
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.66
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.66
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.64
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.64
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.63
COG0218	200	Predicted GTPase [General function prediction only	99.63
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
CHL00071	409	tufA elongation factor Tu	99.63
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.62
COG1163	365	DRG Predicted GTPase [General function prediction	99.62
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.6
PRK13351	687	elongation factor G; Reviewed	99.59
PRK00049	396	elongation factor Tu; Reviewed	99.59
COG0536	369	Obg Predicted GTPase [General function prediction	99.59
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.59
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.59
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.58
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.58
PLN00043	447	elongation factor 1-alpha; Provisional	99.58
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.57
COG1084	346	Predicted GTPase [General function prediction only	99.57
PLN03127	447	Elongation factor Tu; Provisional	99.57
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.57
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.57
PRK09866	741	hypothetical protein; Provisional	99.56
PLN03126	478	Elongation factor Tu; Provisional	99.56
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.56
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.56
COG3596	296	Predicted GTPase [General function prediction only	99.56
PTZ00141	446	elongation factor 1- alpha; Provisional	99.55
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.55
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.53
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.52
PRK09602	396	translation-associated GTPase; Reviewed	99.5
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.5
KOG0090	238	consensus Signal recognition particle receptor, be	99.5
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.49
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.48
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.47
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.47
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.46
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.45
KOG1145	683	consensus Mitochondrial translation initiation fac	99.45
PRK14845	1049	translation initiation factor IF-2; Provisional	99.45
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.45
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.45
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.45
PRK12739	691	elongation factor G; Reviewed	99.43
PRK13768	253	GTPase; Provisional	99.42
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.41
PRK12740	668	elongation factor G; Reviewed	99.4
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.39
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.39
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.38
PRK00007	693	elongation factor G; Reviewed	99.36
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.34
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.34
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.31
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.3
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.28
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.28
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.28
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.24
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.24
PTZ00258	390	GTP-binding protein; Provisional	99.23
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.22
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.19
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.19
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
PTZ00416	836	elongation factor 2; Provisional	99.14
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.13
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.13
PRK09601	364	GTP-binding protein YchF; Reviewed	99.11
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.09
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.09
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.07
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.05
PRK07560	731	elongation factor EF-2; Reviewed	99.04
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.03
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.03
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.01
KOG2486	320	consensus Predicted GTPase [General function predi	98.99
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.99
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.99
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.99
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.97
PRK00098	298	GTPase RsgA; Reviewed	98.95
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.93
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.91
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.91
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.9
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.89
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.85
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.83
PRK12289	352	GTPase RsgA; Reviewed	98.82
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.82
KOG0410	410	consensus Predicted GTP binding protein [General f	98.82
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.81
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.81
KOG1143	591	consensus Predicted translation elongation factor	98.8
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.78
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.78
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.77
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.77
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.76
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.73
PRK12288	347	GTPase RsgA; Reviewed	98.71
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.68
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.64
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.6
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.57
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.56
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.55
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.52
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.48
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.47
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.42
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.42
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.41
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.35
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.35
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.34
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.31
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.3
COG1161	322	Predicted GTPases [General function prediction onl	98.3
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.29
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.28
PRK13796	365	GTPase YqeH; Provisional	98.28
PRK12288	347	GTPase RsgA; Reviewed	98.24
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.24
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.23
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.22
PRK10416	318	signal recognition particle-docking protein FtsY;	98.2
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.19
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.18
PRK14974	336	cell division protein FtsY; Provisional	98.17
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.17
PRK01889	356	GTPase RsgA; Reviewed	98.12
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.11
KOG0460	449	consensus Mitochondrial translation elongation fac	98.1
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.09
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.08
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.05
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.03
cd03112	158	CobW_like The function of this protein family is u	98.03
PRK12289	352	GTPase RsgA; Reviewed	98.02
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.01
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.01
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.01
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.01
COG1162	301	Predicted GTPases [General function prediction onl	97.99
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.95
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.87
PRK00098	298	GTPase RsgA; Reviewed	97.87
COG1162	301	Predicted GTPases [General function prediction onl	97.84
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.78
PRK13796	365	GTPase YqeH; Provisional	97.77
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.76
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.72
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.71
KOG1533	290	consensus Predicted GTPase [General function predi	97.7
KOG0465	721	consensus Mitochondrial elongation factor [Transla	97.69
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.67
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.65
PRK13695	174	putative NTPase; Provisional	97.64
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.61
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.59
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.58
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.56
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.53
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.52
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.52
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.49
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.49
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.48
PRK08118	167	topology modulation protein; Reviewed	97.48
TIGR00959	428	ffh signal recognition particle protein. This mode	97.47
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.46
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.45
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.44
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.41
PRK07261	171	topology modulation protein; Provisional	97.41
KOG2484	435	consensus GTPase [General function prediction only	97.4
PRK10867	433	signal recognition particle protein; Provisional	97.38
COG0523	323	Putative GTPases (G3E family) [General function pr	97.37
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.34
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.33
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.31
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.3
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.28
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.26
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.25
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.24
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.23
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.22
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.22
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.21
PRK14737	186	gmk guanylate kinase; Provisional	97.2
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.17
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.17
PRK05480	209	uridine/cytidine kinase; Provisional	97.16
PRK14738	206	gmk guanylate kinase; Provisional	97.16
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.15
COG3523	1188	IcmF Type VI protein secretion system component Va	97.1
PRK06217	183	hypothetical protein; Validated	97.08
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.08
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.07
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.06
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.05
PTZ00088	229	adenylate kinase 1; Provisional	97.03
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.03
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.03
PRK03839	180	putative kinase; Provisional	97.03
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.01
PRK14530	215	adenylate kinase; Provisional	97.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.99
PLN02674	244	adenylate kinase	96.98
PF00004	132	AAA: ATPase family associated with various cellula	96.97
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.96
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.95
smart00382	148	AAA ATPases associated with a variety of cellular	96.94
PRK08233	182	hypothetical protein; Provisional	96.93
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.93
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.92
PRK07429	327	phosphoribulokinase; Provisional	96.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.9
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.89
PRK14532	188	adenylate kinase; Provisional	96.89
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.88
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.88
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.88
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	96.87
cd03111	106	CpaE_like This protein family consists of proteins	96.86
PRK13949	169	shikimate kinase; Provisional	96.85
PRK14531	183	adenylate kinase; Provisional	96.85
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.85
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.81
PRK02496	184	adk adenylate kinase; Provisional	96.8
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.8
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.8
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.78
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.78
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.78
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	96.77
PLN02200	234	adenylate kinase family protein	96.77
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.76
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.76
PRK00625	173	shikimate kinase; Provisional	96.75
PHA00729	226	NTP-binding motif containing protein	96.73
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.73
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.71
PRK14527	191	adenylate kinase; Provisional	96.69
PRK00300	205	gmk guanylate kinase; Provisional	96.69
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.68
PRK01889	356	GTPase RsgA; Reviewed	96.67
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.66
PRK14529	223	adenylate kinase; Provisional	96.64
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.64
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.63
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.62
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.62
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.59
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.59
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.59

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-41  Score=240.07  Aligned_cols=170  Identities=34%  Similarity=0.662  Sum_probs=158.3

Q ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362            2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA   80 (210)
Q Consensus         2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   80 (210)
                      +..-...+||+|+|++|||||+|+.||..+.|.+.+..|++.++.. ++.++++.+++++|||+||++|+.+...+|++|
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            3455678999999999999999999999999999999999999865 578899999999999999999999999999999


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +++|+|||+++.+||.++ ..|++.+..+. +++|.++||||+|+.....          +..++++.|+.+++..++++
T Consensus        83 hGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~E  151 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLE  151 (205)
T ss_pred             CeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceee
Confidence            999999999999999998 89999999988 6789999999999998887          99999999999999855999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||+++.|++++|..|...+..+
T Consensus       152 TSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  152 TSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             cccCCccCHHHHHHHHHHHHHHh
Confidence            99999999999999999888654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-40  Score=234.05  Aligned_cols=167  Identities=32%  Similarity=0.620  Sum_probs=155.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+|++|||+.+||||||+-||..+.|.+...||++.-| +..+.+++..++|.||||+||++|+++-+.|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            5679999999999999999999999999998899997666 667888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||+++.+||..+ +.|...+.+.. +++-+.|||||+|+...+.          +..+++..++...+. .|+++||+
T Consensus        83 vvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSAK  150 (200)
T KOG0092|consen   83 VVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSAK  150 (200)
T ss_pred             EEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEecc
Confidence            99999999999998 89999999887 6788889999999988665          999999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCcc
Q 028362          164 TQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ++.|++++|..|.+.+.....
T Consensus       151 Tg~Nv~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  151 TGENVNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             cccCHHHHHHHHHHhccCccc
Confidence            999999999999999987643

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=6.3e-39  Score=238.32  Aligned_cols=188  Identities=55%  Similarity=0.976  Sum_probs=157.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+.+|..+.|.+.+.||.+..+...+.+++..+.+.+||++|+++|+.+++.+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            45899999999999999999999999999999999888776677899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.+|+++...|...+....+++|++|||||.|+.+.......  ......+..+++..+++..+..+++++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999999855798877766678999999999999654211000  0112236778999999999866899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362          165 QQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  199 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  199 (210)
                      |.|++++|.++++.+..+..     .+++++|.++
T Consensus       162 g~~v~e~f~~l~~~~~~~~~-----~~~~~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTP-----IKDTKSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhcccc-----ccCCCCceeC
Confidence            99999999999999977532     1233458764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.8e-38  Score=231.32  Aligned_cols=174  Identities=89%  Similarity=1.414  Sum_probs=153.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||+|+.++..+.|...+.||.+..+...+.+++..+.+.+||++|+++|+.++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999999999988887777889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                      +++++||+++...|+..+....+++|++|||||+|+.+.......+.....++.+++.++++.++..++++|||+++.||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999975689998887767899999999999965432112233344588999999999998767999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 028362          169 KAVFDAAIKVVIKP  182 (210)
Q Consensus       169 ~~~~~~i~~~~~~~  182 (210)
                      +++|+.+++.+..+
T Consensus       162 ~~~F~~~~~~~~~~  175 (176)
T cd04133         162 KAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-38  Score=229.51  Aligned_cols=170  Identities=31%  Similarity=0.621  Sum_probs=158.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +....+||+++|+++||||+|+.+|..+.|...+..|.+.+|.. ++..++..+.+++||++||++|+.+...|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            55678999999999999999999999999999999999999865 57889999999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +++|||+++..||+++ ..|+..+..+. +++|++|||||+|+...+.          +..+.++++|.++|+ +|+++|
T Consensus        88 i~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtS  155 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETS  155 (207)
T ss_pred             eEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEcc
Confidence            9999999999999998 67999999988 5999999999999988766          999999999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCccc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      |++|.||+++|..+++.+..+.+.
T Consensus       156 Ak~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  156 AKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             ccCCCCHHHHHHHHHHHHHhhcch
Confidence            999999999999999999865443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-38  Score=225.48  Aligned_cols=167  Identities=35%  Similarity=0.554  Sum_probs=154.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+.+|+++||+.+||||+||+||..+.|+..|.+|++.+| ..++.+.+.++.|++|||+|||+|+.+.+.|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            4669999999999999999999999999999999999888 567889999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-C-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||+++..||++. ..|++-+.... + ++-++|||||.||.+.++          ++.+++...++++++ .|+++||
T Consensus       100 iVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsa  167 (221)
T KOG0094|consen  100 IVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSA  167 (221)
T ss_pred             EEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEecc
Confidence            99999999999998 89999887766 4 467789999999998887          999999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +.|.|+.++|..+...+.....
T Consensus       168 k~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  168 KAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             cCCCCHHHHHHHHHHhccCccc
Confidence            9999999999999888877644

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=9.1e-38  Score=229.91  Aligned_cols=177  Identities=38%  Similarity=0.712  Sum_probs=153.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+..+||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|+++|..+++.+++++|++|
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35679999999999999999999999999999999998888777888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.+|+++...|+..+....++.|++|||||+|+.........  ......++.+++++++++++..+|++|||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            9999999999999767999999887788999999999999642110000  00122488999999999999668999999


Q ss_pred             CCCCC-HHHHHHHHHHHHhC
Q 028362          163 KTQQN-VKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~-i~~~~~~i~~~~~~  181 (210)
                      +++.| |+++|..+++.+..
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999986543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.5e-37  Score=229.88  Aligned_cols=165  Identities=27%  Similarity=0.513  Sum_probs=148.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+++|+.|||||||+.+|..+.+...+.|+.+..+. ..+.+++..+.+.+||++|+++|+.++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999988888888776664 34677889999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||++++++|+++ ..|++.+....++.|++|||||.|+.....          +..++++.+++..+. +++++||++
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~  151 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC  151 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence            99999999999998 799999987778999999999999976544          788999999999886 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      |.|++++|+++++.+...
T Consensus       152 g~~V~~~F~~l~~~i~~~  169 (189)
T cd04121         152 NFNITESFTELARIVLMR  169 (189)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999988753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.8e-38  Score=221.73  Aligned_cols=175  Identities=31%  Similarity=0.560  Sum_probs=156.8

Q ss_pred             CCC-CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCccccc
Q 028362            1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR   78 (210)
Q Consensus         1 m~~-~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   78 (210)
                      |++ ..+..+||+++|++|||||+|+++|++.+|...+..|++.+| .+.+.++++.+.++||||+||++|+++...+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            666 335779999999999999999999999999999999998877 667889999999999999999999999999999


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C----CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~----~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ++|.+++|||++++.||+++ ..|...+-... +    .-|+||+|||+|+....        ...++...++.||...+
T Consensus        81 gaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~g  151 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKG  151 (210)
T ss_pred             CCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcC
Confidence            99999999999999999998 89998877654 2    47999999999997631        12389999999999999


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ..||+++|||+..|++++|..+.+.++....
T Consensus       152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  152 NIPYFETSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence            8899999999999999999999998887653

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=4.6e-37  Score=225.66  Aligned_cols=172  Identities=38%  Similarity=0.719  Sum_probs=149.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|++.|..+++.++++++++|+|||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd   81 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD   81 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence            69999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++++||+++...|+..+....++.|++|||||+|+.+......  .+....++..+++.+++++++..+|+++||++|+
T Consensus        82 it~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~  161 (178)
T cd04131          82 ISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSE  161 (178)
T ss_pred             CCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCC
Confidence            99999999975789999988778999999999999964211000  0011234888999999999997689999999999


Q ss_pred             C-HHHHHHHHHHHHh
Q 028362          167 N-VKAVFDAAIKVVI  180 (210)
Q Consensus       167 ~-i~~~~~~i~~~~~  180 (210)
                      | ++++|..+++...
T Consensus       162 ~~v~~~F~~~~~~~~  176 (178)
T cd04131         162 KSVRDIFHVATMACL  176 (178)
T ss_pred             cCHHHHHHHHHHHHh
Confidence            5 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-38  Score=220.38  Aligned_cols=169  Identities=30%  Similarity=0.574  Sum_probs=157.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +....+|++++|+.|||||+|+.+|....|.+.+..|.+.+|.. .+.++++.+++++|||+||+.|++....|++++.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            44567999999999999999999999999999999999999855 58899999999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++.+++|..+ ..|+.-+.++. +++.++|+|||+|+...+.          ++.++++.||++++. .+.++|
T Consensus        82 alLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmETS  149 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMETS  149 (216)
T ss_pred             eEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehhh
Confidence            9999999999999998 89999988886 8999999999999998876          999999999999997 888999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |+++.|++|+|......+.+..+
T Consensus       150 akt~~~VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  150 AKTAENVEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999988876544

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=7.2e-37  Score=231.97  Aligned_cols=177  Identities=36%  Similarity=0.675  Sum_probs=153.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ...+||+++|++|||||+|+++|..+.|...+.||.+..+...+.+++..+.+.+|||+|+++|+.+++.++++++++|+
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            35689999999999999999999999999999999988887778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.+|+++...|+..+....++.|++|||||+|+.........  ......+..++++++++++++.+|++|||+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk  170 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF  170 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence            999999999998657899999877778999999999998643110000  001234888999999999997679999999


Q ss_pred             CCC-CHHHHHHHHHHHHhCC
Q 028362          164 TQQ-NVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~-~i~~~~~~i~~~~~~~  182 (210)
                      +|. |++++|..++..+.+.
T Consensus       171 tg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         171 TSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCHHHHHHHHHHHHHHh
Confidence            997 8999999999887654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.3e-37  Score=213.10  Aligned_cols=166  Identities=32%  Similarity=0.642  Sum_probs=154.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||+|+-+|..+.|++....|++.+|.. .+.+++..+++.+|||+||++|+.+.+.|++.|.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            55999999999999999999999999999988889998866 47899999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++.+++|..+ ..|++.+..++  +++..++|+||+|...++.          ++.+++..|+++++. .|+++||+
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk  157 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK  157 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence            9999999999998 89999999987  5777889999999987776          899999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCcc
Q 028362          164 TQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +.+|++.+|+.++.+++.-+.
T Consensus       158 t~~~V~~~FeelveKIi~tp~  178 (209)
T KOG0080|consen  158 TRENVQCCFEELVEKIIETPS  178 (209)
T ss_pred             hhccHHHHHHHHHHHHhcCcc
Confidence            999999999999999987654

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=9.7e-37  Score=230.14  Aligned_cols=174  Identities=39%  Similarity=0.746  Sum_probs=152.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+|+|++|||||+|+++|..+.|...+.||....+...+.+++..+.|.+||++|++.|..+++.+++++|++|+|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++|+++...|...+....++.|++|||||+|+.........  .....+++.+++..++++.++.+|++|||+++.
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            999999999877898888777789999999999999654221111  112345788999999999997799999999988


Q ss_pred             C-HHHHHHHHHHHHhCC
Q 028362          167 N-VKAVFDAAIKVVIKP  182 (210)
Q Consensus       167 ~-i~~~~~~i~~~~~~~  182 (210)
                      + ++++|..++.....+
T Consensus       162 ~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         162 RSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            5 999999999977664

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.9e-36  Score=223.75  Aligned_cols=187  Identities=40%  Similarity=0.687  Sum_probs=155.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+++|++|||||||+++|..+.+...+.||....+...+.+++..+.+.+||++|++.|..++..++++++++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999999998888899888777667778888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++++.+...|+..+....++.|+++|+||+|+........  .......+..+++..++...+..+++++||+++.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            99999999885579888887667899999999999976532110  0111123567788888888886689999999999


Q ss_pred             CHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362          167 NVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  199 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  199 (210)
                      |++++|.++++.+.....    ..+.+++|.+|
T Consensus       161 ~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~  189 (189)
T cd04134         161 GVNEAFTEAARVALNVRP----PHPHSSACTIA  189 (189)
T ss_pred             CHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence            999999999999875433    44566677664

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.1e-36  Score=227.29  Aligned_cols=163  Identities=28%  Similarity=0.572  Sum_probs=145.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +.|+++|++|||||||+++|..+.|...+.+|.+..+. ..+.+++..+.+.+||++|+++|+.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999999888899876664 45778899999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |++++++|+++ ..|+..+.... .++|+++||||+|+...+.          +..+++.+++.+.....+++|||++|.
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~~~~etSAktg~  149 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGMRFCEASAKDNF  149 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            99999999998 78999887665 6899999999999976544          778888999988633489999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 028362          167 NVKAVFDAAIKVVIKP  182 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~  182 (210)
                      ||+++|.++++.+.+.
T Consensus       150 gV~e~F~~l~~~~~~~  165 (202)
T cd04120         150 NVDEIFLKLVDDILKK  165 (202)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3e-36  Score=220.93  Aligned_cols=172  Identities=54%  Similarity=0.970  Sum_probs=148.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|+++|..++..++++++++|+||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            47999999999999999999999999889999998888767778899999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++++...|+..+....+++|++||+||+|+.........  ......+..+++.+++++.+..+++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            9999999999855699888876678999999999998654221110  11223478889999999888668999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      .|++++|+.++..+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.9e-36  Score=223.39  Aligned_cols=185  Identities=50%  Similarity=0.882  Sum_probs=157.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|.++.+...+.|+....+...+... +..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888899887776666665 77899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      |++++++++++...|+..+....+++|+++|+||+|+.....      ....+..+++.+++..++..+++++||+++.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            999999999986678887776667899999999999965421      11236778899999998876899999999999


Q ss_pred             HHHHHHHHHHHHhCCccc-hhhhhhcCCCeEEE
Q 028362          168 VKAVFDAAIKVVIKPPQK-QKEKKKKQRGCLLN  199 (210)
Q Consensus       168 i~~~~~~i~~~~~~~~~~-~~~~~~~~~~c~~~  199 (210)
                      ++++|.++++.+.....+ .....+++.+|.+|
T Consensus       155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            999999999999876554 33455667777764

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4e-36  Score=219.74  Aligned_cols=164  Identities=25%  Similarity=0.490  Sum_probs=147.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|.+|||||||++++..+.+...+.|+.+..+...+.+++..+.+.+||++|+++|+.++..+++.++++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            58999999999999999999999999888899998777777888999999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++.++..+ ..|...+....  +++|+++|+||+|+.....          +..+++..+++..+. +++++||+++
T Consensus        82 d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~~  149 (172)
T cd04141          82 SVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAALR  149 (172)
T ss_pred             ECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCCC
Confidence            99999999998 67877776543  5899999999999976544          778889999988886 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCc
Q 028362          166 QNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~~~  183 (210)
                      .||+++|+++++.+.+..
T Consensus       150 ~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         150 HYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=8.2e-36  Score=221.34  Aligned_cols=181  Identities=34%  Similarity=0.565  Sum_probs=153.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +..+||+++|++|||||||++++..+.+...+.||.+..+...+.+++..+.+.+||++|+++|..++..++++++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            45699999999999999999999999998888898888777778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++++++++ ..|...+....  +++|+++|+||+|+.....          +..+++..++..++. +++++||+
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak  150 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK  150 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence            9999999999998 67877766543  5889999999999965443          677778888888875 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCccc---hhhhhhcCCCeEE
Q 028362          164 TQQNVKAVFDAAIKVVIKPPQK---QKEKKKKQRGCLL  198 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~~~---~~~~~~~~~~c~~  198 (210)
                      ++.|++++|.++++.+.+....   ..+++++++-|++
T Consensus       151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  188 (189)
T PTZ00369        151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLI  188 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeee
Confidence            9999999999999888765322   2244445555654

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.6e-36  Score=223.44  Aligned_cols=178  Identities=36%  Similarity=0.617  Sum_probs=149.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|.+|||||||+++|..+.+...+.|+.+..+.....+++..+.+.+||++|+++|..++..+++++|++|+|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888888777766677888889999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           90 VSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      +++++++.+ ..|+..+....    ++.|+++|+||+|+.....          +..+++..++..++. +++++||+++
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999997 67877765432    4789999999999976543          677778888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCccch--------hhhhhcCCCeEEE
Q 028362          166 QNVKAVFDAAIKVVIKPPQKQ--------KEKKKKQRGCLLN  199 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~~~~~~--------~~~~~~~~~c~~~  199 (210)
                      .|++++|+++++.+....+..        ....+++++|++|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            999999999999886543321        1334455566653

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2e-35  Score=216.40  Aligned_cols=171  Identities=63%  Similarity=1.077  Sum_probs=147.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+.++..+.|...+.|+....+...+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            37999999999999999999999999989999988777767778899999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++++...|+..+....++.|+++|+||+|+.+......  .......+..+++..++++++..+++++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999985679888877667899999999999965321000  011223478999999999998668999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKV  178 (210)
Q Consensus       166 ~~i~~~~~~i~~~  178 (210)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.6e-37  Score=207.57  Aligned_cols=170  Identities=33%  Similarity=0.596  Sum_probs=157.7

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+-...+.++.+|+|++|||||+|+-+|..+.|+..|..|++.++.. ++.++|..++++|||++|+++|+.+...+++.
T Consensus         1 mar~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrg   80 (198)
T KOG0079|consen    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRG   80 (198)
T ss_pred             CcccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccC
Confidence            44455567899999999999999999999999999999999988865 57889999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      .+++++|||+++.+||.+. ..|++.++..++.+|-++||||+|.++.+.          +..+++..|+...++ .+|+
T Consensus        81 thgv~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FE  148 (198)
T KOG0079|consen   81 THGVIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFE  148 (198)
T ss_pred             CceEEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hhee
Confidence            9999999999999999998 899999999999999999999999998876          899999999999998 8899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||+++.|++.+|.-|.+++...
T Consensus       149 TSaKe~~NvE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  149 TSAKENENVEAMFHCITKQVLQA  171 (198)
T ss_pred             hhhhhcccchHHHHHHHHHHHHH
Confidence            99999999999999998877653

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-35  Score=212.38  Aligned_cols=167  Identities=32%  Similarity=0.580  Sum_probs=155.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .....+||+++|+++||||-|+-||..+.|.....+|++..+ +..+.++++.++.+||||+||++|+.+...|++.+.+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            345679999999999999999999999999999999999888 4568899999999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +++|||++.+.+|+++ ..|+..+..+. ++++++|||||+||..-+.          +..++++.+++..+. .|+++|
T Consensus        90 AllVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtS  157 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETS  157 (222)
T ss_pred             eEEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEec
Confidence            9999999999999987 89999999998 8999999999999987655          899999999999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |.+..|++++|..++..+.+.
T Consensus       158 Al~~tNVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  158 ALDATNVEKAFERVLTEIYKI  178 (222)
T ss_pred             ccccccHHHHHHHHHHHHHHH
Confidence            999999999999998887654

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.6e-34  Score=216.42  Aligned_cols=164  Identities=27%  Similarity=0.465  Sum_probs=144.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +||+++|++|||||||+++|..+.+...+.||.+.++.. .+.++ +..+.+.+||++|++.|+.++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988889998876643 45566 7889999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhcc-----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           87 FSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ||++++++++.+ ..|+..+...     ..++|++||+||+|+.....          +..+++.++++..+..+++++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999998 7888776543     25789999999999975433          6788999999999866899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      |+++.|++++|+++++.+....
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999887654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.8e-34  Score=209.86  Aligned_cols=162  Identities=30%  Similarity=0.612  Sum_probs=143.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999998888888776664 3466788899999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||++++++++.+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..++...+. +++++||+++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78888776654 6799999999999976654          678889999988876 8999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 028362          166 QNVKAVFDAAIKVVIK  181 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~  181 (210)
                      .|++++|.+++..+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.8e-34  Score=214.70  Aligned_cols=165  Identities=32%  Similarity=0.581  Sum_probs=146.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +..+||+++|++|||||||+++|.++.+...+.||.+.++. ..+.+++..+.+.+||+||++.++.++..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999999998888888876654 35666788899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||++++++++.+ ..|+..+....+..|+++|+||+|+.....          +..+++..++...+. +++++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999998 789988887778899999999999976543          677888888888885 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      +.||+++|+++.+.+...
T Consensus       152 ~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         152 NINVEEMFNCITELVLRA  169 (199)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999988753

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.3e-34  Score=209.23  Aligned_cols=171  Identities=60%  Similarity=1.037  Sum_probs=148.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV   90 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   90 (210)
                      |+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.|..++..+++++|++|+|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            58999999999999999999999888889888887777788899999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362           91 SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus        91 ~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                      ++++++++...|+..+....+++|+++|+||+|+........  .+.....+..+++..+++..+..+++++||+++.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            999999986679998887778999999999999976322110  112223477888999999998778999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 028362          169 KAVFDAAIKVVIK  181 (210)
Q Consensus       169 ~~~~~~i~~~~~~  181 (210)
                      +++|+.+++.+.+
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=2.4e-34  Score=208.27  Aligned_cols=159  Identities=30%  Similarity=0.578  Sum_probs=140.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||++++..+.+...+.||....+...+.+++..+.+.+||+||+++|..++..++++++++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988888888876666677788999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++++++ ..|...+....  +++|+++|+||+|+.....          +..+++..+++.++ .+++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~  149 (163)
T cd04136          82 ITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWG-CPFYETSAKSKI  149 (163)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence            9999999987 67877776543  5799999999999976543          66777888888888 489999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKVV  179 (210)
Q Consensus       167 ~i~~~~~~i~~~~  179 (210)
                      |++++|+++++.+
T Consensus       150 ~v~~l~~~l~~~~  162 (163)
T cd04136         150 NVDEVFADLVRQI  162 (163)
T ss_pred             CHHHHHHHHHHhc
Confidence            9999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.9e-34  Score=208.29  Aligned_cols=161  Identities=29%  Similarity=0.552  Sum_probs=141.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      ++||+++|++|||||||++++..+.+...+.||....+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999988888888888777777888899999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++++ ..|...+....  ++.|+++|+||+|+.....          +..+++..+++.++. +++++||+++
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999998 67777665432  6899999999999976543          566777888888875 8999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028362          166 QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~  180 (210)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=5.1e-35  Score=212.21  Aligned_cols=179  Identities=64%  Similarity=1.095  Sum_probs=164.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+|++|+|+.++|||+|+-.+..+.|+..+.||..++|...+.++ ++.+.+.+|||+||++|+++++..+..+|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            45799999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +||++.+++|++++..+|+..+..++++.|+|+||+|.|+..+.....  .+....+++.+++..++++.|+..|+++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            999999999999999999999999999999999999999985432211  233566799999999999999989999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ++..|+.++|+..+.......+
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999988765

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.4e-33  Score=213.59  Aligned_cols=163  Identities=27%  Similarity=0.443  Sum_probs=142.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+++|++|||||||++++..+.+...+.||.+.++. ..+..++..+.+.+||++|+++|..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            57799999999999999999999999998888999876653 45666778899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||+++++++..+ ..|+..+....+++|++|||||+|+....           +..+++ .+++..+. +++++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999998 78999888777789999999999996432           334444 66676665 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      +.|++++|.++++.+...
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999988754

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1e-33  Score=206.08  Aligned_cols=163  Identities=31%  Similarity=0.625  Sum_probs=144.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999999999988898876654 356678888999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|+..+.... .+.|+++|+||+|+.....          +..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 68998887765 5799999999999976543          677788888888876 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      +.|++++|+++.+.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=2.4e-33  Score=205.24  Aligned_cols=169  Identities=51%  Similarity=0.930  Sum_probs=144.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +|++++|++|+|||||++++..+.+...+.||..+.+...+.+++..+.+.+||+||++++..++..+++++|++|+|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999999998888998877777778888889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++++++...|+..+....++.|+++|+||.|+........  .......+..+++..+++..+..+++++||+++.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999986678888876657899999999999964321000  0011234788899999999988799999999999


Q ss_pred             CHHHHHHHHHH
Q 028362          167 NVKAVFDAAIK  177 (210)
Q Consensus       167 ~i~~~~~~i~~  177 (210)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=3.1e-33  Score=204.69  Aligned_cols=171  Identities=54%  Similarity=0.991  Sum_probs=147.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|+|||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.|...+..++++++++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777677888989999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc--cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++.+++++...|...+....++.|+++|+||+|+.+.....  ..+.....++.+++..+++.++..+++++||+++.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            9999999998667888887666789999999999986542100  01112224778889999999987789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKVV  179 (210)
Q Consensus       167 ~i~~~~~~i~~~~  179 (210)
                      |++++|+.++..+
T Consensus       161 gi~~~f~~~~~~~  173 (174)
T cd04135         161 GLKTVFDEAILAI  173 (174)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=2e-33  Score=204.21  Aligned_cols=161  Identities=33%  Similarity=0.663  Sum_probs=141.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.++.+...+.|+.+.++.. .+..++..+.+.+||++|++++..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            799999999999999999999999988888888766543 4566778899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++.+++..++. +++++||+++.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999988 78998887665 5799999999999976543          567788888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      |++++|+++.+.+.+
T Consensus       150 gv~~l~~~l~~~~~~  164 (165)
T cd01865         150 NVKQVFERLVDIICD  164 (165)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.6e-33  Score=203.90  Aligned_cols=158  Identities=33%  Similarity=0.646  Sum_probs=141.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++..+.+.+.+.|+.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888898877654 45677888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |++++++++++ ..|+..+.... .++|+++|+||.|+.....          +..+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 78988887665 4799999999999976554          778899999988885 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKV  178 (210)
Q Consensus       167 ~i~~~~~~i~~~  178 (210)
                      |++++|.++++.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-35  Score=198.72  Aligned_cols=172  Identities=28%  Similarity=0.535  Sum_probs=156.4

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+.+....+|++++|+.|.|||+|+++|..++|.+....|++.+|.. .+.+.++.+++++||++||++|++....|+++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            44455667899999999999999999999999999989999998854 56789999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      |.+.++|||++++++|+.+ ..|+.-..... +++.++++|||.|+...++          ++..++..|+++... .+.
T Consensus        82 AAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~fl  149 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFL  149 (214)
T ss_pred             ccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eee
Confidence            9999999999999999998 79998877766 7899999999999999887          999999999999987 889


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ++||++|+|++|+|-...+.++.+-+
T Consensus       150 ETSa~TGeNVEEaFl~c~~tIl~kIE  175 (214)
T KOG0086|consen  150 ETSALTGENVEEAFLKCARTILNKIE  175 (214)
T ss_pred             eecccccccHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998876544

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.1e-33  Score=208.13  Aligned_cols=163  Identities=37%  Similarity=0.625  Sum_probs=142.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC----------CEEEEEEEEeCCCcccccccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE----------GTTVNLGLWDTAGQEDYNRLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   75 (210)
                      ..+||+++|++|||||||++++..+.+...+.|+.+.++.. .+...          +..+.+.+||++|+++|..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999998888888766643 33332          45789999999999999999999


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ++++++++++|||+++++++.++ ..|+..+....  ++.|+++|+||+|+.....          +..+++..+++..+
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~  151 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG  151 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence            99999999999999999999998 78998887653  5789999999999976544          67788999999988


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      . +++++||+++.|++++|+++++.+.+
T Consensus       152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         152 I-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            6 89999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.1e-33  Score=206.95  Aligned_cols=167  Identities=29%  Similarity=0.550  Sum_probs=140.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|..+.|.+.+.||.+.++. ..+.+++..+.+.+||++|+++|..++..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999889999987664 46778899999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++.++ ..|+..+.... ...| ++|+||+|+.....     ........+++.++++..+. +++++||+++.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 78988877654 3456 68899999953210     00001234677888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHhCCc
Q 028362          167 NVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~~  183 (210)
                      |++++|+++.+.+...+
T Consensus       153 ~v~~lf~~l~~~l~~~~  169 (182)
T cd04128         153 NVQKIFKIVLAKAFDLP  169 (182)
T ss_pred             CHHHHHHHHHHHHHhcC
Confidence            99999999999887643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.7e-33  Score=208.70  Aligned_cols=162  Identities=32%  Similarity=0.549  Sum_probs=143.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998778888876653 45677888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++.++ ..|+..+.... .+.|+++|+||+|+.....          +..+++..+++..+. +++++||+++.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999998 67988887765 5689999999999976543          677888888888887 89999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 028362          167 NVKAVFDAAIKVVIKP  182 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~  182 (210)
                      |++++|.++.+.+.+.
T Consensus       149 ~i~~~f~~l~~~~~~~  164 (188)
T cd04125         149 NVEEAFILLVKLIIKR  164 (188)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999988764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=195.33  Aligned_cols=165  Identities=32%  Similarity=0.644  Sum_probs=152.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+|++++|++.||||+|+.++.+..|.....+|.+.+|..+.. -..+.+.+++|||+|+++|+.+...+++.++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            4699999999999999999999999999999999999876543 456889999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||+++.+||..+ +.|...+..++ .+.|+|+|+||||+..++.          ++.+.+..+++++|. .||++||+.+
T Consensus       101 yDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~N  168 (193)
T KOG0093|consen  101 YDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKEN  168 (193)
T ss_pred             EecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhccccc
Confidence            999999999998 89999999988 7999999999999999887          899999999999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCCcc
Q 028362          166 QNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~~~~  184 (210)
                      .|++++|+.++..+-++..
T Consensus       169 inVk~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  169 INVKQVFERLVDIICDKMS  187 (193)
T ss_pred             ccHHHHHHHHHHHHHHHhh
Confidence            9999999999988866543

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.9e-33  Score=212.55  Aligned_cols=161  Identities=28%  Similarity=0.427  Sum_probs=141.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECC-EEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +||+++|++|||||||+++|..+.+...+.||.+.++ ...+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999988899997665 34455543 579999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      ||++++++++++ ..|+..+....    .+.|+++|+||+|+.....          +..+++..+++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999998 78988887654    3468999999999975443          778889999998886 8899999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++|.|++++|+++++.+..
T Consensus       149 ktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.3e-33  Score=204.35  Aligned_cols=159  Identities=40%  Similarity=0.824  Sum_probs=146.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      ||+++|++|||||||+++|.++.+.+.+.||. .+.+...+.+++..+.+.+||++|+++|..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998 44456678889999999999999999999988999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCC-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      ++++++++.+ ..|+..+....+ +.|++|||||.|+.....          +..+++++++.+++ .+|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~-~~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELG-VPYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTT-SEEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhC-CEEEEEECCCCCC
Confidence            9999999998 699999998886 799999999999987554          88999999999999 5999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 028362          168 VKAVFDAAIKVVI  180 (210)
Q Consensus       168 i~~~~~~i~~~~~  180 (210)
                      +.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.5e-33  Score=203.09  Aligned_cols=160  Identities=28%  Similarity=0.556  Sum_probs=139.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|.+|||||||++++..+.+.+.+.|+....+...+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888876555667778888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++++ ..|...+....  .++|+++|+||+|+.....          +...+...++...+. +++++||+++
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04176          81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            99999999998 67877776543  5899999999999965433          566677888887775 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      .|++++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd04176         149 TMVNELFAEIVRQM  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.1e-33  Score=202.62  Aligned_cols=161  Identities=30%  Similarity=0.661  Sum_probs=142.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|++|||||||++++.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++..++..++++++++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            589999999999999999999999988888888776653 4566788889999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||+++++++.++ ..|+..+.... ++.|+++|+||+|+.....          +..+++..++...+. +++++||+++
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999998 67988887765 6799999999999976544          677888999988886 8999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028362          166 QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~  180 (210)
                      .|++++|.++.+.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.2e-33  Score=201.90  Aligned_cols=159  Identities=37%  Similarity=0.609  Sum_probs=139.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|..+.+...+.|+....+.....+++..+.+.+||++|+++++.++..++++++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999998888888888777767788888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++.++.++ ..|...+....  .+.|+++|+||+|+....           +...++..++...+. +++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (162)
T cd04138          81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR  147 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence            99999999987 66776665543  579999999999997632           567778888888776 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      .|++++|+++++.+
T Consensus       148 ~gi~~l~~~l~~~~  161 (162)
T cd04138         148 QGVEEAFYTLVREI  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=3.6e-33  Score=202.80  Aligned_cols=158  Identities=25%  Similarity=0.500  Sum_probs=137.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||++++..+.+...+.|+.+..+......+...+.+.+||++|+++|..++..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999998888888877776666677888999999999999999998889999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ++++++++++ ..|+..+....    +++|+++|+||+|+.....          +..+++..++...+. +++++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999987 67776665432    5799999999999976433          667778888887775 899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028362          165 QQNVKAVFDAAIKV  178 (210)
Q Consensus       165 ~~~i~~~~~~i~~~  178 (210)
                      |.|++++|+++++.
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=2.6e-33  Score=211.34  Aligned_cols=169  Identities=28%  Similarity=0.427  Sum_probs=134.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|.+|||||||+++|..+.|.. +.||.+..+....   ...+.+.+||++|++.|..++..++++++++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~---~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ---WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE---eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999999865 5677765543221   256889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc---------ccCCCCCCccCHHHHHHHHHHcCC-----
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVTTAQGEELRKQIGA-----  154 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----  154 (210)
                      ++++++|.++...|........+++|++||+||+|+......         .........+..+++..++++.+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999844444444333467999999999999752110         000112345889999999998762     


Q ss_pred             --------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          155 --------SYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       155 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                              .+|+++||++|.||+++|..+++.+..
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                    379999999999999999999987764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=4e-33  Score=202.19  Aligned_cols=160  Identities=34%  Similarity=0.607  Sum_probs=140.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++..++..++++++++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999988888888877776677788889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++++++..+ ..|...+....  .+.|+++|+||+|+.....          +..+++..+++..+. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999987 67766655432  4789999999999976543          567788888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 028362          167 NVKAVFDAAIKVVI  180 (210)
Q Consensus       167 ~i~~~~~~i~~~~~  180 (210)
                      |++++|+++++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=5.2e-33  Score=206.60  Aligned_cols=162  Identities=34%  Similarity=0.662  Sum_probs=141.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +||+++|++|||||||++++..+.+.. .+.++.+.++.. .+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753 567777666543 467788899999999999999999899999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||++++++++++ ..|+..+.... .++|+++|+||.|+.....          +..+++..++..++. +++++||+++
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999998 77888887765 4799999999999975443          667788888888886 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028362          166 QNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~~  182 (210)
                      .|++++|.++++.+...
T Consensus       149 ~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         149 LNVELAFTAVAKELKHR  165 (191)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988765

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.1e-32  Score=200.43  Aligned_cols=160  Identities=29%  Similarity=0.504  Sum_probs=136.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++..+.+...+.|+.+..+. ..+..++..+.+.+||++|++++..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888876653 34556778899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      |+++++++..+ ..|+..+.....++|+++|+||+|+....           +. .....+++..+ .+++++||+++.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~-~~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKN-LQYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            99999999998 78988888777789999999999997332           22 33455666555 4899999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 028362          168 VKAVFDAAIKVVIKP  182 (210)
Q Consensus       168 i~~~~~~i~~~~~~~  182 (210)
                      ++++|+++++.+.+.
T Consensus       147 v~~~f~~l~~~~~~~  161 (166)
T cd00877         147 FEKPFLWLARKLLGN  161 (166)
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999988753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=8e-33  Score=205.68  Aligned_cols=168  Identities=40%  Similarity=0.641  Sum_probs=133.1

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHHcC-----CCCCCCCCcee--eeeeEE--------EEECCEEEEEEEEeCCCcccccc
Q 028362            8 FIKCVTVGDGAVGKTCMLI-CYTSN-----KFPTDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~-~l~~~-----~~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      .+||+++|++|||||||+. ++.++     .+...+.||.+  ..+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 55544     34566788884  333322        25788999999999999975  3


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc---------cCCCCCCccCH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL---------ADHPGLVPVTT  142 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~---------~~~~~~~~~~~  142 (210)
                      +...+++++|++|+|||++++.|++++...|+..+....++.|+++||||+|+.......         ........++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            456688999999999999999999998546998887766789999999999996421000         00011345889


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          143 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +++++++++++. +|++|||+++.|++++|+.++++
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999997 99999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=7.8e-33  Score=201.05  Aligned_cols=161  Identities=24%  Similarity=0.548  Sum_probs=141.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..++++++++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999877763 45677889999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           88 SLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      |+++++++..+ ..|+..+....      .+.|+++|+||+|+.....          +..++...++...+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999987 78888877654      3689999999999974332          677788888888885 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++++.+++
T Consensus       149 a~~~~gi~~l~~~l~~~l~~  168 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIVD  168 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHhC
Confidence            99999999999999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=7.6e-33  Score=201.04  Aligned_cols=161  Identities=32%  Similarity=0.553  Sum_probs=141.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++. ..+.+++..+.+++||+||++.+..++..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999888877787765553 456678888899999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|+..+.... .++|+++|+||+|+.....          ...+++..+++.++...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999987 78988887654 6899999999999976544          6778888999988877889999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028362          165 QQNVKAVFDAAIKV  178 (210)
Q Consensus       165 ~~~i~~~~~~i~~~  178 (210)
                      +.|++++|+++.+.
T Consensus       151 ~~~v~~~~~~l~~~  164 (165)
T cd01864         151 SQNVEEAFLLMATE  164 (165)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=7.7e-33  Score=200.55  Aligned_cols=160  Identities=34%  Similarity=0.600  Sum_probs=140.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999988888888887777667778898999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++.+ ..|...+....  .++|+++|+||+|+.....          +..+++..+++..+. +++++||+++
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR  149 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence            99999999987 67776665532  5799999999999976543          567778888888876 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      .|++++|+++++.+
T Consensus       150 ~~i~~l~~~l~~~~  163 (164)
T cd04145         150 LNVDKAFHDLVRVI  163 (164)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=7.5e-33  Score=200.31  Aligned_cols=158  Identities=33%  Similarity=0.569  Sum_probs=140.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC--CEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +||+++|++|+|||||++++..+.+...+.|+.+.++. ..+.+.  +..+.+++||+||++++..++..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999988888888877663 345555  778999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |||+++++++..+ ..|+..+.....++|+++|+||.|+.....          +..+++..+++.++. +++++||+++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999987 789988877667899999999999976543          677888999999886 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKV  178 (210)
Q Consensus       166 ~~i~~~~~~i~~~  178 (210)
                      .|++++|+++.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.6e-32  Score=200.23  Aligned_cols=162  Identities=35%  Similarity=0.630  Sum_probs=140.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+++|++|||||||++++..+.+.+.+.++.+..+ ...+.+++..+.+.+||+||+++++.++..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            34679999999999999999999999999888788877665 34567789999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      ++|||++++++++.+ ..|...+....     .++|+++|+||+|+....           +..+++.+++++++..+++
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeEE
Confidence            999999999999987 67876554322     468999999999997432           6788899999988876899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ++||+++.|++++|.++++.
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999865

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.3e-32  Score=197.81  Aligned_cols=158  Identities=28%  Similarity=0.516  Sum_probs=136.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++..+.+.+.+.++....+ .....+++..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999999888777765554 335667888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      |++++.++.++ ..|+..+....+++|+++|+||+|+...             ...+...+++..+. +++++||+++.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999987 7899888776678999999999998432             23445667776665 889999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 028362          168 VKAVFDAAIKVVIK  181 (210)
Q Consensus       168 i~~~~~~i~~~~~~  181 (210)
                      ++++|+.+++.+.+
T Consensus       146 v~~l~~~l~~~~~~  159 (161)
T cd04124         146 VVKLFQDAIKLAVS  159 (161)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.9e-32  Score=207.09  Aligned_cols=164  Identities=30%  Similarity=0.553  Sum_probs=145.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +..+||+++|++|||||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|++++..++..++++++++|
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            3668999999999999999999999998878888887776 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++.+++++ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..++. +++++||+
T Consensus        90 lv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~  157 (216)
T PLN03110         90 LVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSAL  157 (216)
T ss_pred             EEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999987 78988887765 5899999999999966544          677888888888876 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|++++..+..
T Consensus       158 ~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        158 EATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987754

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=2.1e-32  Score=197.29  Aligned_cols=155  Identities=25%  Similarity=0.353  Sum_probs=129.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+.++..+.|.+.+.|+ ...+...+.+++..+.+.+||++|++..     .+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEEEE
Confidence            58999999999999999999999887766555 3445566788999999999999999752     46688999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++|+++ ..|+..+....  +++|+++||||.|+....        ...+..+++.++++..+..+|++|||+++.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999998 67888887664  679999999999985321        112778888999987765689999999999


Q ss_pred             CHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKV  178 (210)
Q Consensus       167 ~i~~~~~~i~~~  178 (210)
                      ||+++|.++++.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=194.66  Aligned_cols=163  Identities=32%  Similarity=0.553  Sum_probs=145.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE--EECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV--VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+|++++|++-||||+|++.|..++|.+...||.+.+|..++  .-++..+++++|||+||++|+++...|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            4689999999999999999999999999999999988875432  34688899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCC-cEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~-piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|||+++++||+.+ +.|+....-+.  |.. ..++||+|+|+...+.          ++.++++.++..++. .|+++|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999998 89988766553  444 4569999999998776          999999999999998 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|+++.|..+.+.+..
T Consensus       155 ak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHH
Confidence            99999999999999887754

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=6.7e-32  Score=197.82  Aligned_cols=171  Identities=49%  Similarity=0.917  Sum_probs=144.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||++|++.+...+..++.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888898887776677788889999999999999999999889999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++++++.+...|...+....+++|+++|+||.|+.........  ......+...+++.++...+..+++++||+++.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            999999998866788888776678999999999998654221110  011123567788888988887789999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKVV  179 (210)
Q Consensus       167 ~i~~~~~~i~~~~  179 (210)
                      |++++|.++.+.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.6e-32  Score=203.37  Aligned_cols=155  Identities=26%  Similarity=0.481  Sum_probs=135.2

Q ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh
Q 028362           14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR   92 (210)
Q Consensus        14 lG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   92 (210)
                      +|++|||||||+++|..+.+...+.||.+.++ ...+.+++..+.+.+||++|+++|+.++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888899987665 44567788899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362           93 ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus        93 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      .+++.+ ..|+..+....+++|+++||||+|+....           +..+. ..++...+. ++++|||+++.||+++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999998 78999888777789999999999996432           33333 466777665 89999999999999999


Q ss_pred             HHHHHHHhCC
Q 028362          173 DAAIKVVIKP  182 (210)
Q Consensus       173 ~~i~~~~~~~  182 (210)
                      .++++.+...
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.6e-32  Score=198.45  Aligned_cols=162  Identities=30%  Similarity=0.515  Sum_probs=139.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      ||+++|++|||||||++++..+.|...+.||.+..+. ..+.+++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            7999999999999999999999999999999987764 456778889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++++++..+ ..|+..+... . .+.|+++|+||.|+.+...        .....+++..++++++. +++++||+++.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999998 7898876543 3 3578999999999864421        11346677788888886 88999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      |++++|+.+++.+.+
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=4.5e-32  Score=202.27  Aligned_cols=166  Identities=23%  Similarity=0.397  Sum_probs=133.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc--------CcccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   79 (210)
                      +||+|+|.+|||||||+++|..+.+...+.|+....+ ...+.+++..+.+++||+||.+.+...        ....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888886554 345667888899999999997655321        2234789


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhcc----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      +|++|+|||++++++++.+ ..|...+...    ..++|+++|+||+|+...+.          +..+++..++.+....
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999998 6777766554    36799999999999976543          5566677766543334


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      +++++||++|.|++++|+.++..+..+...
T Consensus       150 ~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         150 GYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            899999999999999999999988876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=3.9e-32  Score=197.22  Aligned_cols=161  Identities=32%  Similarity=0.577  Sum_probs=141.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||++++..+.+...+.|+.+.++ ...+..++..+.+.+||+||++++..++..++++++++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            358999999999999999999999998878788887665 4456678888999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||++++.++.++ ..|+..+.... .++|+++|+||+|+.....          +..++...++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999998 68988887766 4699999999999976543          677788888887765 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028362          165 QQNVKAVFDAAIKVV  179 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~  179 (210)
                      +.|++++|+++++.+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=191.88  Aligned_cols=164  Identities=31%  Similarity=0.590  Sum_probs=148.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +-.+||+++|..|||||+|+++|..+.|++..-.|++.+|.. ++.+++..+++++||++||++|+++...|++.|+++|
T Consensus         5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali   84 (213)
T KOG0095|consen    5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI   84 (213)
T ss_pred             ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence            456899999999999999999999999999988999988855 6789999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++..++|+-+ ..|+..++.+. ..+-.|+||||.|+.+.+.          +..+.+++|+..... .|.++||+
T Consensus        85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsak  152 (213)
T KOG0095|consen   85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAK  152 (213)
T ss_pred             EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhccc
Confidence            99999999999987 89999999987 4566789999999988876          888899999988765 88999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      +.+|++.+|..+.-.+..
T Consensus       153 ea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  153 EADNVEKLFLDLACRLIS  170 (213)
T ss_pred             chhhHHHHHHHHHHHHHH
Confidence            999999999988776653

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=3.3e-32  Score=196.87  Aligned_cols=159  Identities=30%  Similarity=0.579  Sum_probs=139.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++++++++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988877777766553 44667888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++.++ ..|+..+.... +++|+++|+||.|+.....          +..+++..++...+ .+++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~-~~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENG-LLFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence            99999999997 78888776554 7899999999999976543          67888899999888 489999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKVV  179 (210)
Q Consensus       167 ~i~~~~~~i~~~~  179 (210)
                      |++++|+++++.+
T Consensus       149 ~i~~~~~~~~~~~  161 (161)
T cd04113         149 NVEEAFLKCARSI  161 (161)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.2e-31  Score=198.68  Aligned_cols=174  Identities=46%  Similarity=0.772  Sum_probs=146.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+|+|++|+|||||++++..+.+.+.+.++....+...+..++..+.+.+||++|++.+.......+..++++++|||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988888777788777766667778888999999999999988887778899999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                      ++++++++++...|+..+....+++|+++|+||+|+...............+..+++..+++..+..+++++||+++.|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999986679998887777899999999999865322111112233366788899999998778999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 028362          169 KAVFDAAIKVVIKP  182 (210)
Q Consensus       169 ~~~~~~i~~~~~~~  182 (210)
                      +++|+++.+.+..-
T Consensus       162 ~~~f~~l~~~~~~~  175 (187)
T cd04129         162 DDVFEAATRAALLV  175 (187)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999877654

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=6e-32  Score=196.93  Aligned_cols=162  Identities=32%  Similarity=0.548  Sum_probs=142.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|.+|||||||++++..+.+...+.|+....+...+.+++..+.+.+||+||+++|..++..++++++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37999999999999999999999998888888887777667778888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++++++.. ..|...+...  ..+.|+++++||.|+.....          ...+++..+++.++..+++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (168)
T cd04177          81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR  149 (168)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence            99999999998 6777766643  25899999999999976543          66777888888887558999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028362          166 QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~  180 (210)
                      .|++++|.+++..+.
T Consensus       150 ~~i~~~f~~i~~~~~  164 (168)
T cd04177         150 TNVDEVFIDLVRQII  164 (168)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.1e-31  Score=199.77  Aligned_cols=166  Identities=33%  Similarity=0.541  Sum_probs=141.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +||+++|++|||||||+++|..+.+.. .+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998874 67788877664 4577889999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ||++++.+++++ ..|+..+....++.|+++|+||+|+.....      ....+..+++..++...+. +++++||+++.
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999987 789988877667899999999999864321      1122556778888888776 78999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 028362          167 NVKAVFDAAIKVVIKP  182 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~  182 (210)
                      |++++|+++.+.+.+.
T Consensus       153 gv~~l~~~i~~~~~~~  168 (193)
T cd04118         153 NVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=193.97  Aligned_cols=166  Identities=33%  Similarity=0.639  Sum_probs=151.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .-.+|++++|..=||||+|+-|+..++|...+.+|....| ..++.+.+....+.||||+||++|..+-+.|++++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            3568999999999999999999999999999888885555 556778889999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++|+.||+.+ ..|...+.... ..+.++|||||+|+...+.          ++.++++.+++..++ .++++||+
T Consensus        91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk  158 (218)
T KOG0088|consen   91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAK  158 (218)
T ss_pred             EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheecccc
Confidence            99999999999998 89999988876 6789999999999999887          999999999999998 78899999


Q ss_pred             CCCCHHHHHHHHHHHHhCCc
Q 028362          164 TQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++.||.++|+.+...+.+..
T Consensus       159 ~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  159 DNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             cccCHHHHHHHHHHHHHHHh
Confidence            99999999999998887543

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.1e-32  Score=208.50  Aligned_cols=164  Identities=28%  Similarity=0.436  Sum_probs=140.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+++|..+.+...+.||..+.+...+.+++..+.+.+||++|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888898876666677888999999999999999998888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhcc----------CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           89 LVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~----------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      ++++++|+++ ..|.+.+...          ..++|+++|+||+|+.....          +..+++.+++.......++
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999998 6777666432          25799999999999975433          6777788777654445899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++||+++.|++++|++++..+..+.
T Consensus       150 evSAktg~gI~elf~~L~~~~~~p~  174 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAKLPN  174 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcccc
Confidence            9999999999999999999775443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=7e-32  Score=196.96  Aligned_cols=161  Identities=31%  Similarity=0.555  Sum_probs=140.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCccccc-ccCcccccCccEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV   84 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i   84 (210)
                      +.+||+++|++|||||||++++..+.+...+.++.+..+. ..+.+++..+.+.+||++|+++++ .++..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            4589999999999999999999999988888888866553 456778889999999999999887 57888999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||+++++++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++.+++...+. +++++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  148 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA  148 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence            99999999999998 78998877654  5799999999999976654          677888889888774 8999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q 028362          163 KT---QQNVKAVFDAAIKVV  179 (210)
Q Consensus       163 ~~---~~~i~~~~~~i~~~~  179 (210)
                      ++   +.|++++|.++++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999998766

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=8.6e-32  Score=196.13  Aligned_cols=163  Identities=29%  Similarity=0.585  Sum_probs=141.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|.+|||||||++++..+.+...+.++.+.++. ..+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999999888877777766553 345677888899999999999999988889999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|+..+.... +++|+++|+||.|+.....          +..+++..++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78998887654 7899999999999975433          677888888888876 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      +.|++++|.++.+.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=6.3e-32  Score=197.02  Aligned_cols=164  Identities=20%  Similarity=0.286  Sum_probs=138.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ++.+||+++|.+|||||||+++|..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999998 888899877764 3466788888999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      ++|||++++.+++.+ ..|+..+... .++|+++|+||+|+.+...          +...+...+++.++..+++++||+
T Consensus        82 llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~  149 (169)
T cd01892          82 CLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSSK  149 (169)
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEec
Confidence            999999999999887 6777765432 4799999999999965432          333455677777776556899999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+.+.+.+..
T Consensus       150 ~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         150 LGDSSNELFTKLATAAQY  167 (169)
T ss_pred             cCccHHHHHHHHHHHhhC
Confidence            999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.6e-32  Score=203.43  Aligned_cols=163  Identities=32%  Similarity=0.550  Sum_probs=140.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+||+++|++|||||||+++|..+.+...+.|+.+.++.. .+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            5899999999999999999999999888878888766533 3444 5678899999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++++++++ ..|+..+....  ...|++||+||.|+.....          +..++...+++.++. +++++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999998 67888776543  3578899999999976544          778888999999885 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.|++++|+++++.+.+.
T Consensus       150 ~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         150 TGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999887654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.6e-32  Score=203.08  Aligned_cols=167  Identities=29%  Similarity=0.569  Sum_probs=145.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +....+||+|+|++|||||||+++|..+.+...+.|+.+.++. ..+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus         2 ~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~   81 (210)
T PLN03108          2 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG   81 (210)
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            3456799999999999999999999999888877888876653 356778888999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +++|||+++++++..+ ..|+..+.... +..|+++|+||+|+.....          +..+++.++++.++. +++++|
T Consensus        82 ~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~S  149 (210)
T PLN03108         82 ALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEAS  149 (210)
T ss_pred             EEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999987 67877666544 6899999999999976544          778889999998886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|.++++.+.+.
T Consensus       150 a~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        150 AKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999888754

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=5.2e-32  Score=205.30  Aligned_cols=160  Identities=24%  Similarity=0.385  Sum_probs=134.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccccccCccccc-CccEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVL   85 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~   85 (210)
                      +||+++|++|||||||+++|..+.+. ..+.++.+ ..+...+.+++..+.+.+||++|++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 66666665 44456677888999999999999982  33344566 8999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.+++.+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++...+. +++++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999987 67888776654  5799999999999976554          677778888888776 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.|++++|+++++.+...
T Consensus       147 ~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         147 LQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999988644

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=9.1e-32  Score=195.39  Aligned_cols=159  Identities=30%  Similarity=0.530  Sum_probs=136.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCccEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d   88 (210)
                      ||+++|++|||||||++++..+.+...+.|+....+.....+++..+.+.+||+||++. +...+..+++.+|++|+|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            68999999999999999999988877777877666666677888999999999999985 34556778999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ++++++++.+ ..|+..+....   .++|+++|+||+|+.....          +..+++..+++.++. +++++||+++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999998 77887777643   4899999999999976543          677888999998885 8999999999


Q ss_pred             -CCHHHHHHHHHHHHh
Q 028362          166 -QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 -~~i~~~~~~i~~~~~  180 (210)
                       .|++++|+++++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence             599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=4.5e-31  Score=192.54  Aligned_cols=169  Identities=62%  Similarity=1.091  Sum_probs=144.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+++|.++.+...+.|+....+......++..+.+++||+||++.+...+..+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999988788888877777777888999999999999999998888888999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      ++++.++......|+..+....++.|+++|+||+|+......... ......+..+++.+++..++..+++++||+++.|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            999999998877899888877779999999999999876531100 0011235677888888888877899999999999


Q ss_pred             HHHHHHHHHH
Q 028362          168 VKAVFDAAIK  177 (210)
Q Consensus       168 i~~~~~~i~~  177 (210)
                      ++++|+++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.2e-31  Score=191.38  Aligned_cols=161  Identities=35%  Similarity=0.676  Sum_probs=141.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.++.+...+.++.+..+. .....++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777788776653 35667788889999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |++++.+++.+ ..|+..+.... +++|+++|+||+|+.....          +..+.+..+++.++. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999987 67988887766 7899999999999876443          567788888888886 79999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      |++++|+++.+.+.+
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988754

Rab GTPases are implicated in vesicle trafficking.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-34  Score=196.05  Aligned_cols=167  Identities=37%  Similarity=0.594  Sum_probs=149.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE---------CCEEEEEEEEeCCCcccccccCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA---------EGTTVNLGLWDTAGQEDYNRLRPL   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~D~~G~~~~~~~~~~   75 (210)
                      ...+|.+.+|++|||||+++.++..++|...-.+|.+.+|..+ +.+         .+..+.+++||++||++|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            3557999999999999999999999999999899999888543 333         346789999999999999999999


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ++++|-+++++||+++..||.++ ..|+..++.+.  .+..+|++|||+|+.+.+.          ++.+++..++.+++
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kyg  155 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYG  155 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhC
Confidence            99999999999999999999998 89999988765  6778999999999998877          89999999999999


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      + |||++||-+|.|+++..+.+...++++.+
T Consensus       156 l-PYfETSA~tg~Nv~kave~LldlvM~Rie  185 (219)
T KOG0081|consen  156 L-PYFETSACTGTNVEKAVELLLDLVMKRIE  185 (219)
T ss_pred             C-CeeeeccccCcCHHHHHHHHHHHHHHHHH
Confidence            8 99999999999999999998888876544

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4.2e-31  Score=191.57  Aligned_cols=159  Identities=31%  Similarity=0.547  Sum_probs=135.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeE-EEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +||+++|++|||||||++++..+  .+...+.|+.+.++.. ...+ .+..+.+.+||++|++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6778888888766533 3444 367799999999999999998999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||+++++++.++ ..|++.+....++.|+++|+||+|+.+...          +....+..++...+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999887 789988887667899999999999976543          566666777777775 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028362          165 QQNVKAVFDAAIKVV  179 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~  179 (210)
                      +.|++++|+++.+.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=6.2e-31  Score=190.43  Aligned_cols=160  Identities=35%  Similarity=0.644  Sum_probs=140.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ++||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998877778877655 45677888999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      +|+++++++..+ ..|+..+.... +..|+++++||+|+.....          ...++...++...+. +++++||+++
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG  148 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78888777665 6899999999999875433          577788888888885 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      .|++++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=9.2e-31  Score=191.08  Aligned_cols=163  Identities=32%  Similarity=0.595  Sum_probs=139.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.++.+...+.++.+.++ .....+++..+.+.+||+||++.+..++..+++.++++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988877777776555 345677888899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+++++++.+. ..|...+....     .++|+++|+||+|+.....          ...++...+.+..+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999887 67766544332     3799999999999975332          56777888888887668999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++.+.+...
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         150 KEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=99.98  E-value=1.3e-30  Score=196.71  Aligned_cols=167  Identities=31%  Similarity=0.594  Sum_probs=141.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+++|++|||||||+++|..+.+. .+.|+.+.++. ..+.+++..+.+.+||+||+++|..++..+++++|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            345689999999999999999999988774 45677766553 3466778889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      |+|||++++++++++...|...+....  .+.|+++|+||+|+.....          +..++...++..++. +++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~S  158 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECS  158 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            999999999999998656777666543  4689999999999976543          667788888888876 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      |+++.|++++|+++...+....
T Consensus       159 Ak~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        159 AKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999887653

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.98  E-value=6.3e-31  Score=193.58  Aligned_cols=177  Identities=30%  Similarity=0.515  Sum_probs=146.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+|+|.+|||||||++++..+.+...+.|+....+......++..+.+.+||+||++++...+..++..++++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            68999999999999999999999888778888876666677788888999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++..+++.+ ..|...+ +... .+.|+++|+||+|+...+.          ...++...+++..+. +++++||+++.
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE  149 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999998 4554444 4332 5789999999999975433          555667777777774 88999999999


Q ss_pred             CHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362          167 NVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  199 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  199 (210)
                      |++++|.++.+.+.......  ..+.+.+|.+|
T Consensus       150 gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~  180 (180)
T cd04137         150 NVEEAFELLIEEIEKVENPL--DPGQKKKCSIM  180 (180)
T ss_pred             CHHHHHHHHHHHHHHhcCCC--CCCCCCCceeC
Confidence            99999999999888665433  23366788764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01861 Rab6 Rab6 subfamily

Probab=99.98  E-value=8.6e-31  Score=189.30  Aligned_cols=158  Identities=37%  Similarity=0.612  Sum_probs=136.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.+..+...+.|+.+.++ ...+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998877778777655 345667788889999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++..+ ..|+..+.... .+.|+++|+||.|+.....          ...++...++...+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999997 67887766544 4799999999999964433          677788888888875 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKV  178 (210)
Q Consensus       167 ~i~~~~~~i~~~  178 (210)
                      |++++|+++.+.
T Consensus       149 ~v~~l~~~i~~~  160 (161)
T cd01861         149 NVKELFRKIASA  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.98  E-value=2.9e-31  Score=195.46  Aligned_cols=161  Identities=16%  Similarity=0.192  Sum_probs=124.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|+++||||||++++..+.+. .+.||.+.++. .  ++...+.+.+||+||+++++.+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45689999999999999999999988775 45777765543 2  23345889999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC----CcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG----ASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  160 (210)
                      |||+++++++.++...+...+.... +++|++||+||+|+...            ...++.........    ...++++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~l~l~~~~~~~~~~~~~  158 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAEITDKLGLHSLRQRHWYIQST  158 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCceEEEec
Confidence            9999999999988544444444332 68999999999999654            23333333221111    1245689


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|+|++++|+|+.+.+.++
T Consensus       159 Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        159 CATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             cCCCCCCHHHHHHHHHHHHhhc
Confidence            9999999999999999988764

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=2.7e-30  Score=186.59  Aligned_cols=159  Identities=36%  Similarity=0.651  Sum_probs=135.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++..+.+...+.++....+ .....+.+..+.+.+||++|++.+..+++.++++++++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999988776666664444 344666778889999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++..+ ..|+..+.... .++|+++|+||+|+.....          +..++...++...+. +++++|++++.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999887 67887777655 4799999999999975543          566777888887776 78999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028362          167 NVKAVFDAAIKVV  179 (210)
Q Consensus       167 ~i~~~~~~i~~~~  179 (210)
                      |++++++++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2.3e-30  Score=187.45  Aligned_cols=160  Identities=34%  Similarity=0.596  Sum_probs=138.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999988888888877777777888899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ++++.++.+. ..|...+...  ..++|+++|+||+|+.....          ....+...++..++. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999988 5665555554  25899999999999976332          566677778887776 89999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 028362          167 NVKAVFDAAIKVVI  180 (210)
Q Consensus       167 ~i~~~~~~i~~~~~  180 (210)
                      |++++|+++.+.+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=7.4e-31  Score=194.26  Aligned_cols=165  Identities=33%  Similarity=0.605  Sum_probs=151.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ..+||+++|.+|||||+|..+|..+.|.+.+.||+++.|...+.+++..+.+.|+|++|+++|..+...++++++++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhc-cC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |+++++.||+.+ ..+.+.+.+ .. .++|+++||||+|+...+.          +..++++.++...+. +|+++||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999998 566666633 33 5789999999999988665          999999999999997 699999999


Q ss_pred             CCCHHHHHHHHHHHHhCCc
Q 028362          165 QQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~~  183 (210)
                      ..+++++|..+++.+....
T Consensus       150 ~~~v~~~F~~L~r~~~~~~  168 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRLPR  168 (196)
T ss_pred             CcCHHHHHHHHHHHHHhhh
Confidence            9999999999999887643

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=4.5e-30  Score=185.60  Aligned_cols=157  Identities=32%  Similarity=0.644  Sum_probs=136.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            68999999999999999999999887777787776654 34556778899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |+++++++..+ ..|+..+....  .+.|+++|+||+|+....           ...++...++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999987 67888887664  589999999999997433           566788888888875 8999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKV  178 (210)
Q Consensus       166 ~~i~~~~~~i~~~  178 (210)
                      .|++++++++.+.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=4e-31  Score=192.58  Aligned_cols=156  Identities=17%  Similarity=0.206  Sum_probs=122.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||++++..+.+. .+.||.+.++. ...  ...+.+.+||++|+++++.+|..++++++++|+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45699999999999999999999987775 35677765543 222  245889999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH---c-CCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---I-GASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  160 (210)
                      |||++++.++.++...|.+.+.... +++|++||+||+|+...            +..+++..+...   . ...+++++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  150 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNWYVQPS  150 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcEEEEEe
Confidence            9999999999988544555555432 67999999999999653            345555554421   1 12367899


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028362          161 SSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~  177 (210)
                      ||++|.|++++|+||.+
T Consensus       151 SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         151 CATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eCCCCCChHHHHHHHhc
Confidence            99999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=5.1e-30  Score=186.43  Aligned_cols=164  Identities=27%  Similarity=0.440  Sum_probs=129.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+++|..+.+...+ ++....+.....+++..+.+.+||++|++.++..+..++..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999999999886653 33333344445566788999999999999888777778899999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQN  167 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  167 (210)
                      ++++.+++.+...|...+....++.|+++|+||+|+.+....        ....+++..++..++ ..+++++||+++.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            999999999756788888776678999999999999765320        001233333334433 24789999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 028362          168 VKAVFDAAIKVVIK  181 (210)
Q Consensus       168 i~~~~~~i~~~~~~  181 (210)
                      ++++|+.+...+.+
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=2.5e-30  Score=190.94  Aligned_cols=166  Identities=21%  Similarity=0.300  Sum_probs=127.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEE-CCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +.+||+++|++|||||||++++..+.+... .||.+... ...+.+ ++..+.+.+||++|+++++.+|..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998887654 56665443 223333 446789999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--c---CCcEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--I---GASYY  157 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~  157 (210)
                      +|+|++++.++..+ ..|+..+....  .++|+++|+||+|+...            ...+++..+...  .   ...++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999998887 56665554432  57999999999999643            233444444321  1   11367


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCccch
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ  186 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  186 (210)
                      +++||+++.|++++++++.+.+.+.....
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRRKML  176 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHHhhh
Confidence            89999999999999999999997554433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.7e-30  Score=191.57  Aligned_cols=161  Identities=20%  Similarity=0.242  Sum_probs=123.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +..+||+++|++|||||||++++..+.+.. +.||.+..+. .+.  ...+.+++||++|+++++.+|..+++++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456999999999999999999999887754 5677765543 232  345889999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (210)
                      |+|+++++++.+....+.+.+.... .++|++||+||.|+...            ...++........    ...+++++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~~~~~~  158 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNWYIQGC  158 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcEEEEee
Confidence            9999999999988544555544322 57899999999999653            2222222211110    11256689


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|.|++++|+|+.+.+.++
T Consensus       159 Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        159 CATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999887765

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.9e-30  Score=189.29  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=121.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||++++..+.+. .+.||.+..+. ....  ..+.+.+||+||+++++.+|..++++++++|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            35699999999999999999999888774 46777765543 2223  45789999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (210)
                      |||+++++++++..+.|...+.... +++|++||+||+|+.+..            ..++........    ....++++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~  154 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQPT  154 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEEe
Confidence            9999999999988544444444432 679999999999996542            222222221111    12246689


Q ss_pred             ccCCCCCHHHHHHHHHHHHh
Q 028362          161 SSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ||++|.|++++|+|+.+.+.
T Consensus       155 Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      155 CATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=3.2e-30  Score=188.02  Aligned_cols=156  Identities=19%  Similarity=0.286  Sum_probs=123.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|.+|||||||++++..+.+.. +.||.+..+. ..  ....+.+.+||+||+++++..|..+++++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TV--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EE--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987654 6777755543 22  23457889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHh-ccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-----CcEEEEecc
Q 028362           90 VSRASYENVLKKWIPELQ-HYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYYIECSS  162 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~-~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa  162 (210)
                      ++++++.++ ..|+..+. ... .+.|+++|+||+|+...            +..+++..++...+     ...++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999998 45555444 332 56899999999999643            45666666654322     125778999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++|.|++++|+|+.+.+...
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhc
Confidence            99999999999999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2.2e-32  Score=183.15  Aligned_cols=159  Identities=33%  Similarity=0.626  Sum_probs=143.1

Q ss_pred             EEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           12 VTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      +++|++++|||+|+-|+..+.|- .+..+|.+.+|... +..+++.+++++||++||++|++....|++++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999999998875 45567888888554 66789999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362           90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                      .++.||++. +.|+..+..+. ..+.+.+++||+|+..++.          +..++++.+++.|++ ||.++||++|.|+
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999998 89999999887 5778889999999987765          788899999999998 9999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 028362          169 KAVFDAAIKVVIKP  182 (210)
Q Consensus       169 ~~~~~~i~~~~~~~  182 (210)
                      +-.|..+.+.+.+.
T Consensus       149 d~af~~ia~~l~k~  162 (192)
T KOG0083|consen  149 DLAFLAIAEELKKL  162 (192)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999888654

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=3.6e-29  Score=182.25  Aligned_cols=162  Identities=31%  Similarity=0.593  Sum_probs=137.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +..++|+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4669999999999999999999998888777777776544 335677888899999999999999998889999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.....          +..+....+.+... .+++++||+
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~-~~~~~~Sa~  152 (169)
T cd04114          85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQD-MYYLETSAK  152 (169)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcC-CeEEEeeCC
Confidence            99999999999887 68888777655 4799999999999975543          55666677776666 489999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIKVV  179 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~  179 (210)
                      ++.|++++|+++.+.+
T Consensus       153 ~~~gv~~l~~~i~~~~  168 (169)
T cd04114         153 ESDNVEKLFLDLACRL  168 (169)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=4.3e-30  Score=185.56  Aligned_cols=153  Identities=17%  Similarity=0.229  Sum_probs=116.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|.+|||||||++++..+.+. .+.||.+..+. .+..  ..+.+.+||+||++++..+|..+++++|++|+|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            48999999999999999999988876 46777765442 2333  45889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHH---cCCcEEEEeccC
Q 028362           89 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQ---IGASYYIECSSK  163 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~Sa~  163 (210)
                      ++++.++.++...|...+.... .+.|++|++||+|+.+..            ...+ ...+...   .....++++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~Sak  144 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNWYIQATCAT  144 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCEEEEEeeCC
Confidence            9999999988544555544332 578999999999996531            2222 2222110   112256789999


Q ss_pred             CCCCHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIK  177 (210)
Q Consensus       164 ~~~~i~~~~~~i~~  177 (210)
                      +|.|++++|+||.+
T Consensus       145 ~g~gv~~~~~~l~~  158 (159)
T cd04150         145 SGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=2.5e-29  Score=187.83  Aligned_cols=161  Identities=25%  Similarity=0.409  Sum_probs=131.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|++|||||||+++|..+.+...+.++........+.+.+..+.+.+||++|+..|..++..++.++|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999887777777655555677788889999999999999998888899999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCC
Q 028362           90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQ  166 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~  166 (210)
                      +++.+++.+ ..|+..+....  .++|+++|+||.|+.....         .+..+...+... ..+ .+++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWN-CGFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcC-CcEEEecCCCCC
Confidence            999999998 67776665543  4799999999999965311         134444444433 333 378999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      |++++|+++++.+..
T Consensus       150 gv~~l~~~l~~~~~~  164 (198)
T cd04147         150 NVLEVFKELLRQANL  164 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00876 Ras Ras family

Probab=99.97  E-value=1.9e-29  Score=181.72  Aligned_cols=157  Identities=34%  Similarity=0.653  Sum_probs=135.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|++|||||||++++..+.+...+.|+....+.......+..+.+++||+||++.+..++..+++.++++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999888888888887765565667777789999999999999988899999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      ++++++.++ ..|...+....  ...|+++|+||+|+.....          ...+++..++..++. +++++||+++.|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999987 56665555544  4899999999999987443          677888888888874 899999999999


Q ss_pred             HHHHHHHHHHH
Q 028362          168 VKAVFDAAIKV  178 (210)
Q Consensus       168 i~~~~~~i~~~  178 (210)
                      ++++|+++.+.
T Consensus       149 i~~l~~~l~~~  159 (160)
T cd00876         149 IDEVFKLLVRE  159 (160)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=7e-29  Score=187.71  Aligned_cols=168  Identities=27%  Similarity=0.479  Sum_probs=142.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      +.....+||+++|++|||||||++++..+.+...+.||.+.++.. .+..++..+.+.+||++|++++..++..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            455678999999999999999999999999988888998777643 4556788899999999999999999999999999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++++|||++++.++..+ ..|+..+.....++|+++++||+|+....           ... ....+++..+. .++++|
T Consensus        84 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~-~~~~~~~~~~~-~~~e~S  149 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKA-RQITFHRKKNL-QYYDIS  149 (215)
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCH-HHHHHHHHcCC-EEEEEe
Confidence            99999999999999988 78888887666789999999999986432           222 23456666665 889999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |+++.|++++|.++++.+...+.
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhccc
Confidence            99999999999999998876543

>cd00154 Rab Rab family

Probab=99.97  E-value=3e-29  Score=180.04  Aligned_cols=156  Identities=37%  Similarity=0.745  Sum_probs=136.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||++++.++.+...+.++....+. .....++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988877777766653 35666778899999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |+++++++..+ ..|+..+.... ...|+++|+||+|+.....          ...++..+++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999987 67988888776 6899999999999973332          577888888888765 89999999999


Q ss_pred             CHHHHHHHHH
Q 028362          167 NVKAVFDAAI  176 (210)
Q Consensus       167 ~i~~~~~~i~  176 (210)
                      |++++++++.
T Consensus       149 ~i~~~~~~i~  158 (159)
T cd00154         149 NVEELFQSLA  158 (159)
T ss_pred             CHHHHHHHHh
Confidence            9999999986

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.8e-30  Score=188.41  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=123.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      .|+++|++|||||||+++|..+.+...+.||.+..+   ..++...+.+.+||++|+++++.+|..+++++|++++|||+
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            379999999999999999999988888888876542   23445568899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCH----HHHHHHHHHcCCcEEEEeccCC-
Q 028362           90 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQIGASYYIECSSKT-  164 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~-  164 (210)
                      +++.++.+. ..|+..+....+++|+++|+||+|+.....          +..    ..+..++.+.+. +++++||++ 
T Consensus        78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~  145 (164)
T cd04162          78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDD  145 (164)
T ss_pred             CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence            999999887 566666654447899999999999966532          111    223455555554 788888887 


Q ss_pred             -----CCCHHHHHHHHHH
Q 028362          165 -----QQNVKAVFDAAIK  177 (210)
Q Consensus       165 -----~~~i~~~~~~i~~  177 (210)
                           ++|++++|+.+++
T Consensus       146 ~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         146 GSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             CChhHHHHHHHHHHHHhc
Confidence                 9999999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-29  Score=171.88  Aligned_cols=165  Identities=30%  Similarity=0.586  Sum_probs=149.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +..+|.+++|+-|||||+|+..|...+|-.....|++..|.. .+.+.++.+++++||++||++|+.....+++.+.+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            456899999999999999999999999988888899888854 4678999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      .|||++.++.+..+ ..|+.-..... |+..+++++||.|+...++          +..+++..|+++.+. .|.++||+
T Consensus        89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sak  156 (215)
T KOG0097|consen   89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAK  156 (215)
T ss_pred             EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEeccc
Confidence            99999999999998 78987766554 7888999999999998877          999999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      +|.|+++.|-+...++...
T Consensus       157 tg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  157 TGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             ccCcHHHHHHHHHHHHHHh
Confidence            9999999998888777643

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2e-28  Score=179.17  Aligned_cols=155  Identities=18%  Similarity=0.246  Sum_probs=118.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ...+||+++|++|||||||++++....+ ..+.||.+..+ ....++  .+.+.+||+||++.++.+|..++++++++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI-KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            3568999999999999999999997754 34556655322 233344  4788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHh-cc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362           86 AFSLVSRASYENVLKKWIPELQ-HY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE  159 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~-~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  159 (210)
                      |||++++.++.+. ..|+..+. .. ..++|+++|+||+|+...            ...+++..+...    ....++++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  154 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHWRIQP  154 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCceEEEe
Confidence            9999999999887 45554443 22 268999999999999653            234444444432    12348999


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~  177 (210)
                      +||++|.|++++|+++++
T Consensus       155 ~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         155 CSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             ccCCCCcCHHHHHHHHhc
Confidence            999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=2.7e-28  Score=176.29  Aligned_cols=152  Identities=18%  Similarity=0.206  Sum_probs=114.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +|+++|++|||||||+++|..+. +...+.||.+.... ..  ....+.+.+||+||+++++.+|..++++++++|+|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 35566677654332 12  2345788999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhcc----CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH---HHHc-CCcEEEEe
Q 028362           89 LVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI-GASYYIEC  160 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  160 (210)
                      ++++.++..+ ..|+..+...    ..++|+++|+||+|+....            ..++....   .... ...+++++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~~  144 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFAS  144 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEEe
Confidence            9999998876 5555554332    1479999999999996542            12222211   1101 11257899


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028362          161 SSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~  177 (210)
                      ||+++.|++++|+++.+
T Consensus       145 Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         145 NALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eCCCCCchHHHHHHHhc
Confidence            99999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=5.8e-28  Score=176.93  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=118.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||++++..+.+.. +.|+.+.++. ...++  .+.+.+||+||++.+...|..+++++|++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            356899999999999999999999888764 4666665542 23333  4788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHH-HHHH----HHcCCcEEEE
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELR----KQIGASYYIE  159 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~  159 (210)
                      |+|+++++++......+...+.... .++|+++++||+|+...            ...++. ..+.    ...+ .++++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~-~~~~~  155 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHT-WHIQG  155 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCc-eEEEe
Confidence            9999999999887444555554433 57999999999998653            222222 2221    1122 36899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~  177 (210)
                      +||+++.|++++|+++.+
T Consensus       156 ~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         156 CCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             cccCCCCCHHHHHHHHhc
Confidence            999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=6.6e-28  Score=179.72  Aligned_cols=150  Identities=23%  Similarity=0.325  Sum_probs=120.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE-----CCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA-----EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +||+++|++|||||||++++..+.+.+.+.||.+..+... ..+     ++..+.+.+||++|+++|+.++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888889987665432 333     3578999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhcc--------------------CCCCcEEEEeeCcccccccccccCCCCCCccCH
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHY--------------------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT  142 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~  142 (210)
                      +|+|||++++.+++++ ..|+..+...                    ..++|++|||||.|+.+.+....      ....
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~------~~~~  153 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG------NLVL  153 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch------HHHh
Confidence            9999999999999998 7998887652                    14789999999999976532000      0122


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCCC
Q 028362          143 AQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      .....++.+.++ +.++.++.+..
T Consensus       154 ~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         154 TARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             hHhhhHHHhcCC-ceEEEecCCcc
Confidence            335566788887 67777877543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1.2e-27  Score=175.32  Aligned_cols=159  Identities=21%  Similarity=0.330  Sum_probs=126.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+++|++|+|||||++++..+.+.. ..||.+.... .+..++  +.+.+||++|+..++..|..++.+++++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~-~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIE-EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEE-EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccc-eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            3788999999999999999999999876543 4566654432 344444  67889999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--c---CCcEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--I---GASYYI  158 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~  158 (210)
                      ||+|.++++.+.++...+.+.+.... .++|++|++||+|+.+.            ...+++......  +   ....++
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~~v~  154 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPWSVF  154 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCEEEE
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCceEEE
Confidence            99999999999988666666666544 68999999999999765            344444443321  1   223577


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .+||.+|+|+.+.++||.+++
T Consensus       155 ~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  155 SCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHH
T ss_pred             eeeccCCcCHHHHHHHHHhcC
Confidence            899999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1.9e-27  Score=176.51  Aligned_cols=157  Identities=17%  Similarity=0.247  Sum_probs=121.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||++++.++.+. .+.||..... ..+.+++  +.+.+||+||+..++..|..+++.++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            56799999999999999999999988764 4566654432 2344454  678899999999999889999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc------------
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------  152 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  152 (210)
                      |+|+++++++.+....+...+.... .+.|+++++||+|+...            +..++...+....            
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV  160 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence            9999999999877433444443332 57999999999999643            4555666555431            


Q ss_pred             ---CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          153 ---GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       153 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                         ...+++++||+++.|++++|+|+.+.
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence               12368999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.9e-28  Score=178.29  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=117.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      +|+++|++|||||||++++.++ +...+.||.+... ..+..  ..+.+++||+||++.++.+|..++++++++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999976 6667778876542 23333  347889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCC-
Q 028362           90 VSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQ-  165 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~-  165 (210)
                      +++.++.++ ..|+..+....  .++|+++|+||+|+.......+-      .....+..++.+.+. .+++++||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i------~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGADV------IEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHH------HHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999987 56666555432  57999999999999765310000      000111223323332 36777999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 028362          166 -----QNVKAVFDAAIK  177 (210)
Q Consensus       166 -----~~i~~~~~~i~~  177 (210)
                           .|+++.|+|+..
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=1e-27  Score=172.86  Aligned_cols=151  Identities=17%  Similarity=0.210  Sum_probs=113.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|+++||||||++++..+.+.. +.|+.+.++. ...  ...+.+.+||+||++.++.+|..+++.++++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998877653 4566544432 222  3457889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-----HcCCcEEEEeccC
Q 028362           90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYIECSSK  163 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  163 (210)
                      +++.++......|...+.... .+.|+++|+||+|+....            ...+......     ..+ .+++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRT-WSIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCc-EEEEEeecc
Confidence            999888776455555555433 579999999999996532            1222211111     111 368999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIK  177 (210)
Q Consensus       164 ~~~~i~~~~~~i~~  177 (210)
                      ++.|++++|+++.+
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=3.1e-27  Score=170.56  Aligned_cols=152  Identities=24%  Similarity=0.305  Sum_probs=113.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      +|+++|++|||||||+++|..+.+.. +.||.+..+. .+.. +..+.+.+||+||++.+...|..++.+++++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            68999999999999999999988754 3566654332 2222 3457899999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH------HHHcCCcEEEEecc
Q 028362           90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL------RKQIGASYYIECSS  162 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa  162 (210)
                      +++.++......+...+.... .+.|+++|+||+|+...            ....+....      +...+ .+++++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa  144 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRD-WYVQPCSA  144 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCc-EEEEeccc
Confidence            999988887433344444322 58999999999999643            122222211      11112 36889999


Q ss_pred             CCCCCHHHHHHHHHH
Q 028362          163 KTQQNVKAVFDAAIK  177 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~  177 (210)
                      ++++|++++|+++.+
T Consensus       145 ~~~~gv~~~~~~i~~  159 (160)
T cd04156         145 VTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCCChHHHHHHHhc
Confidence            999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=3.9e-27  Score=174.00  Aligned_cols=157  Identities=14%  Similarity=0.187  Sum_probs=118.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.++|+++|.+|||||||++++.++.+.. +.||...... ...++  .+.+.+||+||+..++..|..++.+++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE-ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            567999999999999999999999887643 3455443321 23333  3778899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----------cC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----------IG  153 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  153 (210)
                      |+|++++.++......+...+.... .++|+++|+||+|+...            +..+++.+....           .+
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence            9999999999887433444443322 57999999999999643            334444333211           12


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ...++++||++++|++++++|+.++
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            3458899999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=7.6e-27  Score=169.65  Aligned_cols=152  Identities=20%  Similarity=0.309  Sum_probs=113.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCC------CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKF------PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      +|+++|++|||||||++++.....      ...+.||....+. .+.++  ...+.+||+||++.+..++..++..++++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999986422      2334455544432 23334  47888999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhc-cC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc------CCc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------GAS  155 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  155 (210)
                      ++|+|+++++++... ..|+..+.. .. .++|+++|+||+|+...            ...++...+....      ...
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence            999999999888887 455444433 22 57999999999998654            3334444443321      123


Q ss_pred             EEEEeccCCCCCHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      +++++||++|.|++++++||.+
T Consensus       145 ~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEEeeCCCCcCHHHHHHHHhc
Confidence            7899999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=2.2e-26  Score=179.69  Aligned_cols=147  Identities=19%  Similarity=0.313  Sum_probs=120.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-------------CEEEEEEEEeCCCccccc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-------------GTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~i~D~~G~~~~~   70 (210)
                      ....+||+|+|+.|||||||+++|..+.+...+.+|++.++. ..+.++             ++.+.+.|||++|+++|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            346699999999999999999999999998888999987664 334443             357899999999999999


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-------------CCCcEEEEeeCcccccccccccCCCCC
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLREDKHYLADHPGL  137 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~piilv~nK~D~~~~~~~~~~~~~~  137 (210)
                      .++..++++++++|+|||++++.+++++ ..|+..+....             .++|++|||||+|+.....    ....
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~  172 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGS  172 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----cccc
Confidence            9999999999999999999999999998 79999887652             2589999999999965321    0001


Q ss_pred             CccCHHHHHHHHHHcCCcE
Q 028362          138 VPVTTAQGEELRKQIGASY  156 (210)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~  156 (210)
                      ..+..+++++++.+.+..+
T Consensus       173 s~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        173 SGNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             ccccHHHHHHHHHHcCCCc
Confidence            1146789999999987543

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.9e-26  Score=166.13  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=115.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|.+|||||||++++.+..+ ..+.++.+.... ...+.  .+.+.+||+||++.+...+..+++.++++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998874 344555544332 23333  47889999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEEeccCC
Q 028362           90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIECSSKT  164 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~  164 (210)
                      +++.++......+...+.... .+.|+++|+||+|+....            ..++.......    ....+++++||++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  144 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSAVT  144 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeCCC
Confidence            999999987433333434332 689999999999997542            22233333221    1234899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028362          165 QQNVKAVFDAAIK  177 (210)
Q Consensus       165 ~~~i~~~~~~i~~  177 (210)
                      |.|++++|+++..
T Consensus       145 ~~gv~~~~~~l~~  157 (158)
T cd00878         145 GDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCHHHHHHHHhh
Confidence            9999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=6.1e-26  Score=157.22  Aligned_cols=162  Identities=18%  Similarity=0.226  Sum_probs=126.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+++||+++|..|+||||++++|.+.. .+...||.+.++. +  ...+.+.+++||++||...++.|..||...|++|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-t--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-T--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-E--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            468999999999999999999999766 3444566554432 2  23355889999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCH---HHHHHHHHHcCCcEEEEec
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRKQIGASYYIECS  161 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~S  161 (210)
                      |+|.+|+..+++....+-..+.... ...|+++++||.|+...-.         ....   .....++.... ++.+.||
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~---------~~~i~~~~~L~~l~ks~~-~~l~~cs  159 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALS---------LEEISKALDLEELAKSHH-WRLVKCS  159 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccC---------HHHHHHhhCHHHhccccC-ceEEEEe
Confidence            9999999999988666655555443 6799999999999985421         0111   22334443344 4889999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |.+|+++.+.+.|+.+.+.+
T Consensus       160 ~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  160 AVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence            99999999999999998876

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.1e-26  Score=163.43  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=133.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..++..+|+++|..++||||++.+|..++.... .||++..... +.+  +++.|++||++||+.++.+|.+|+++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~y--kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEY--KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEE--cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            356889999999999999999999999987666 8888766442 223  369999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYI  158 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  158 (210)
                      |||+|.+|++.+.++.+++...+.... ...|+++.+||.|++..            .+..++.+.....    ....+.
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w~iq  156 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNWHIQ  156 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCcEEe
Confidence            999999999999999777777777665 68999999999999876            3333333332222    223555


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .++|.+|+|+.|.++|+.+.+.+.
T Consensus       157 ~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  157 STCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             eccccccccHHHHHHHHHHHHhcc
Confidence            699999999999999999988654

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=1.3e-25  Score=164.46  Aligned_cols=141  Identities=29%  Similarity=0.500  Sum_probs=121.9

Q ss_pred             CCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhcc
Q 028362           31 NKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY  109 (210)
Q Consensus        31 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  109 (210)
                      +.|.+.+.||.+.++ ...+.+++..+.+.+||++|+++++.++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            457778899998776 44577889999999999999999999999999999999999999999999998 6888877654


Q ss_pred             C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          110 S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       110 ~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      . +++|++||+||+|+.....          +..+++..++..++. .++++||++|.|++++|+++++.+....
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            4 6799999999999975443          677888888888876 7899999999999999999999986644

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.6e-25  Score=160.69  Aligned_cols=152  Identities=26%  Similarity=0.341  Sum_probs=116.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV   90 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   90 (210)
                      |+++|++|||||||++++.+..+...+.|+.+..+.. ....+  +.+.+||+||++.++..+..++..+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            7999999999999999999999988888888665442 33333  78999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----HcCCcEEEEeccCCC
Q 028362           91 SRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIGASYYIECSSKTQ  165 (210)
Q Consensus        91 ~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~  165 (210)
                      ++.++......+...+.... .++|+++|+||+|+....            ...+......    .....+++++|++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL------------SVDELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc------------CHHHHHHHhCcccccCCceEEEEEEeccC
Confidence            99988876433444443322 578999999999986542            1111111111    011247889999999


Q ss_pred             CCHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIK  177 (210)
Q Consensus       166 ~~i~~~~~~i~~  177 (210)
                      .|++++++++.+
T Consensus       147 ~gi~~l~~~l~~  158 (159)
T cd04159         147 TNIDIVLDWLIK  158 (159)
T ss_pred             CChHHHHHHHhh
Confidence            999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=7e-25  Score=166.18  Aligned_cols=178  Identities=30%  Similarity=0.501  Sum_probs=138.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||+++|..+.+...+.++.+..+.. .....+..+.+.+||++|+++|+.++..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999999989998766644 34444458899999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCC--CccCHHHHHHHHHHc--CCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQI--GASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~  160 (210)
                      |||.++..++.+....|...+.... .+.|+++++||+|+.........-...  ...............  ....++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999997777777799999988877 479999999999998874311100000  012222222222222  12248899


Q ss_pred             ccC--CCCCHHHHHHHHHHHHhCCcc
Q 028362          161 SSK--TQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       161 Sa~--~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |++  ++.+++++|.++...+.....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            999  999999999999998876543

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=2.3e-27  Score=166.74  Aligned_cols=165  Identities=34%  Similarity=0.501  Sum_probs=148.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...-+|++++|..+|||||+++++..+-|...+..+++.++.. .+.+.+..+.+.+||++||++|..+...|+++|.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            3466999999999999999999999999999999999887743 456677778888999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      ++||+.+|+.||+.. ..|.+.++....++|.++|-||+|+.+...          +...+.+.++..++. .++.+|++
T Consensus        97 vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvk  164 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVK  164 (246)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhh
Confidence            999999999999997 799999998889999999999999988876          788899999998885 78899999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ...|+..+|..+++++..
T Consensus       165 ed~NV~~vF~YLaeK~~q  182 (246)
T KOG4252|consen  165 EDFNVMHVFAYLAEKLTQ  182 (246)
T ss_pred             hhhhhHHHHHHHHHHHHH
Confidence            999999999999887754

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=4.2e-25  Score=162.29  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeeeE---EEEE---CCEEEEEEEEeCCCccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFSA---NVVA---EGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~~~---~~~~---~~~~~~~~i~D~~G~~~~~   70 (210)
                      +|+++|.++||||||+++|....       +...+.++.      +.++..   ...+   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998632       222222221      112211   1122   5677899999999999999


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      ..+..+++.+|++|+|+|++++.+.... ..|.....   .++|+++|+||+|+....            ......++++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            9999999999999999999987666554 44443322   468999999999986431            1223345555


Q ss_pred             HcCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          151 QIGAS--YYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       151 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .++..  +++++||++|.|++++|+++.+.+.
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            55542  4889999999999999999988753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=5.8e-25  Score=160.67  Aligned_cols=154  Identities=21%  Similarity=0.319  Sum_probs=114.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.++|+++|++|||||||++++.+..+. .+.|+.+..+. .+...+  ..+.+||++|+..+...+..+++.+++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~-~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK-TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            345799999999999999999999987653 34555543322 233444  67888999999998888888899999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-------cE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SY  156 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  156 (210)
                      +|+|+++..++......+...+.... .++|+++++||+|+....            ..++   +....+.       .+
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~---i~~~l~~~~~~~~~~~  151 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAEE---IAEALNLHDLRDRTWH  151 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHHH---HHHHcCCcccCCCeEE
Confidence            99999999888877444444444332 579999999999986532            1222   2222221       24


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 028362          157 YIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      ++++||+++.|++++|+|+.+
T Consensus       152 ~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         152 IQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEEeECCCCCCHHHHHHHHhc
Confidence            678999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=1.5e-24  Score=157.72  Aligned_cols=155  Identities=20%  Similarity=0.185  Sum_probs=105.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------cccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------LSYR   78 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~~~~   78 (210)
                      .+|+++|.+|||||||+++|.+..+.....+......... ......+.+++|||||+.... .+.          ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~Dt~G~~~~~-~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVG-HFDYKYLRWQVIDTPGLLDRP-LEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEE-EEccCceEEEEEECCCcCCcc-ccCCchHHHHHHHHHHh
Confidence            3799999999999999999998876432222111111111 112234789999999984321 111          0112


Q ss_pred             CccEEEEEEECCChhHH--HHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           79 GADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      .+|++++|+|++++.++  +.. ..|+..+.....+.|+++|+||+|+.....          +  ....++....+ .+
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~--~~~~~~~~~~~-~~  144 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------L--SEIEEEEELEG-EE  144 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------H--HHHHHhhhhcc-Cc
Confidence            36899999999987653  443 467777765545899999999999965432          1  12444444433 48


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++++||+++.|++++|+++.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         145 VLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             eEEEEecccCCHHHHHHHHHHHh
Confidence            89999999999999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.6e-25  Score=158.59  Aligned_cols=135  Identities=27%  Similarity=0.289  Sum_probs=101.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc-----cccccCcccccCccEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFV   84 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i   84 (210)
                      ||+++|++|||||||+++|.++.+.  +.+|....+      ..     .+||+||+.     .++.+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987652  334432222      11     579999983     3444433 478999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||++++.++..  ..|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            9999999998765  2454432     24999999999996532           4566777778777765789999999


Q ss_pred             CCCHHHHHHHHH
Q 028362          165 QQNVKAVFDAAI  176 (210)
Q Consensus       165 ~~~i~~~~~~i~  176 (210)
                      +.|++++|+++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=3.6e-24  Score=153.27  Aligned_cols=157  Identities=35%  Similarity=0.522  Sum_probs=122.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|.+|+|||||++++....+...+.++....+... +..++..+.+.+||+||+..+..++..+++.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777766655443 55677778899999999999998888889999999999


Q ss_pred             EECCCh-hHHHHHHHHHHHHHhccCC-CCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|+... .++......|...+..... +.|+++++||+|+....            ............+..+++++||++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK------------LKTHVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch------------hhHHHHHHHhhccCCceEEeecCC
Confidence            999877 6666654456555555443 88999999999996542            222333333444445799999999


Q ss_pred             CCCHHHHHHHHH
Q 028362          165 QQNVKAVFDAAI  176 (210)
Q Consensus       165 ~~~i~~~~~~i~  176 (210)
                      +.|++++++++.
T Consensus       149 ~~gv~~~~~~l~  160 (161)
T TIGR00231       149 GKNIDSAFKIVE  160 (161)
T ss_pred             CCCHHHHHHHhh
Confidence            999999998863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.3e-24  Score=158.35  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=107.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccCccc---ccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRGA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~   80 (210)
                      +|+++|.+|||||||+++|.+........|  +...... ...+.+ ...+.+||+||+.+    ++.+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~-~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG-VVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcce-EEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            589999999999999999997543211111  1111111 122222 24788999999742    22233333   3459


Q ss_pred             cEEEEEEECCCh-hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           81 DVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        81 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      |++++|+|++++ .+++.. ..|.+.+....   ..+|+++|+||+|+.+..           ........+.......+
T Consensus        80 d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~  147 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE-----------ELFELLKELLKELWGKP  147 (170)
T ss_pred             CEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch-----------hhHHHHHHHHhhCCCCC
Confidence            999999999998 788776 67877776553   368999999999996653           23344555555532347


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 028362          157 YIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ++++||+++.|++++|+++.+.
T Consensus       148 ~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         148 VFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            8999999999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=1.3e-25  Score=152.95  Aligned_cols=155  Identities=23%  Similarity=0.336  Sum_probs=128.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ..+.+.++|..++|||||+|....+.+.+.-.||.+.....   +....+.+.+||+|||++|+++|+.|++.+++++||
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            46789999999999999999999998888888888765432   344557788899999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-------cEEE
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI  158 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  158 (210)
                      +|+++++.+.-...++.+.+.... ..+|++++|||.|+++.-            ...   .+..+++.       ..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~---~li~rmgL~sitdREvcC~  160 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKI---ALIERMGLSSITDREVCCF  160 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHH---HHHHHhCccccccceEEEE
Confidence            999999988888778888888776 799999999999998762            222   12222221       2567


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .+|+++..||+.+.+|+++.-
T Consensus       161 siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  161 SISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EEEEcCCccHHHHHHHHHHHh
Confidence            899999999999999998754

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.9e-24  Score=145.25  Aligned_cols=160  Identities=16%  Similarity=0.213  Sum_probs=132.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..++++|+++|..++||||++.+|..+.. ....||++....   ++..+++.|.+||++|++..+.+|.+|+....++|
T Consensus        14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnve---tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   14 GNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVE---TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             CcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEE---EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            35689999999999999999999998864 344677765543   24446789999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE  159 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  159 (210)
                      ||+|..++..++++.+++...+.+.. .+.|+++.+||.|++..            ...+++..+.+.-    ..+...+
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A------------~~pqei~d~leLe~~r~~~W~vqp  157 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA------------MKPQEIQDKLELERIRDRNWYVQP  157 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc------------cCHHHHHHHhccccccCCccEeec
Confidence            99999999999999888999988776 78999999999999887            3455555554422    2234567


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 028362          160 CSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ++|.+++|+.|-|.|+.+.+.
T Consensus       158 ~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  158 SCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cccccchhHHHHHHHHHhhcc
Confidence            999999999999999988764

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=8.3e-24  Score=168.59  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=111.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCc-eeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCc---ccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRP---LSYRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~   79 (210)
                      ..|+|+|.||||||||+++++..+..- .+..| ...... .+.+. ....+++||+||..+-    ..+..   ..++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G-~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLG-VVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEE-EEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            368999999999999999999765322 22212 222111 12221 2346889999997431    12222   24557


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++++++|+|+++.++++.. ..|...+..+.   .++|+++|+||+|+.+...          +..+....+....+. +
T Consensus       237 a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~  304 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-P  304 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-C
Confidence            9999999999988777776 78888887764   3789999999999975432          233344444455554 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++++||++++|++++++++.+.+..
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999988764

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=8e-24  Score=153.05  Aligned_cols=153  Identities=18%  Similarity=0.166  Sum_probs=101.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .|+++|.+|||||||+++|.+.   .+...+.++...... ......+ ...+.+||+||+++|......+++++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999963   233332232222221 1233331 4578999999999887666667889999999


Q ss_pred             EEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--CCcEEEEe
Q 028362           86 AFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--GASYYIEC  160 (210)
Q Consensus        86 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  160 (210)
                      |+|+++   +++...+     ..+... ...|+++|+||+|+.....        .....++..+.....  ...+++++
T Consensus        81 V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  146 (164)
T cd04171          81 VVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADAPIFPV  146 (164)
T ss_pred             EEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCCcEEEE
Confidence            999987   3333322     122221 2249999999999965321        001223444444432  23489999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 028362          161 SSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~  177 (210)
                      ||+++.|++++++.+..
T Consensus       147 Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         147 SAVTGEGIEELKEYLDE  163 (164)
T ss_pred             eCCCCcCHHHHHHHHhh
Confidence            99999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.91  E-value=1.1e-23  Score=158.04  Aligned_cols=153  Identities=18%  Similarity=0.169  Sum_probs=107.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   75 (210)
                      ..++|+|+|++|||||||++++.+..+....  .++.... ...+..++. ..+.+||+||..+.         ...+ .
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPT-TRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccce-eEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4589999999999999999999987643222  2222211 222333332 36888999997332         1111 1


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      .+.++|++++|+|++++.+.... ..|.+.+.... .++|+++|+||+|+.....          .     .......+ 
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~-  179 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGR-  179 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCC-
Confidence            35689999999999998887765 56777766554 5789999999999965432          1     12333333 


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .+++++||+++.|++++++++.+.+
T Consensus       180 ~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         180 PDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHhhC
Confidence            4789999999999999999997653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=8.3e-24  Score=145.43  Aligned_cols=173  Identities=26%  Similarity=0.494  Sum_probs=143.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +..-.+||.++|++.+|||||+-+++++.+.+.+..+.+.++ .+++.+.+.++.|.+||++|++++..+.+....++-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            334569999999999999999999999999887777877776 5578899999999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      ++|+||++.++++..+ ..|.+.........--|+||+|.|+.-.-.     ++..+.....+..+++-+++ +.+.+|+
T Consensus        96 IlFmFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~St  168 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCST  168 (205)
T ss_pred             EEEEEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeec
Confidence            9999999999999998 799888777664333457899999754321     11112344567788888887 7778999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ....|+.++|..+..++....
T Consensus       169 s~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  169 SHSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             cccccHHHHHHHHHHHHhCCc
Confidence            999999999999999888754

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.90  E-value=1e-22  Score=144.44  Aligned_cols=153  Identities=38%  Similarity=0.671  Sum_probs=115.7

Q ss_pred             EECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCC
Q 028362           13 TVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS   91 (210)
Q Consensus        13 llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   91 (210)
                      ++|++|+|||||++++..... .....++....+............+.+||+||+..+...+...++.++++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998776 4454555533334455566778899999999999888888888999999999999999


Q ss_pred             hhHHHHHHHHH--HHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362           92 RASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK  169 (210)
Q Consensus        92 ~~s~~~~~~~~--~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  169 (210)
                      +.+.... ..|  .........+.|+++|+||+|+.....          ................+++++|+.++.|++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  149 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELGVPYFETSAKTGENVE  149 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcCCcEEEEecCCCCChH
Confidence            9988887 444  223333347899999999999976542          111111222333344589999999999999


Q ss_pred             HHHHHHH
Q 028362          170 AVFDAAI  176 (210)
Q Consensus       170 ~~~~~i~  176 (210)
                      ++++++.
T Consensus       150 ~~~~~l~  156 (157)
T cd00882         150 ELFEELA  156 (157)
T ss_pred             HHHHHHh
Confidence            9999885

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.90  E-value=1.1e-22  Score=147.81  Aligned_cols=158  Identities=18%  Similarity=0.206  Sum_probs=107.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC-CEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .|+++|.+|+|||||+++|..+.+.....+........ ..... +..+.+.+||+||++.|..++...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            58999999999999999999887765544444333321 22222 23578899999999999888888899999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----cCCcEEEEecc
Q 028362           88 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYIECSS  162 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa  162 (210)
                      |+++.......  ..+..+..  .++|+++|+||+|+.....         .........+...     ....+++++||
T Consensus        82 d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence            99875322211  12222322  4689999999999864321         0011111111111     11247899999


Q ss_pred             CCCCCHHHHHHHHHHHHh
Q 028362          163 KTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~  180 (210)
                      +++.|++++++++.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=1.9e-23  Score=156.42  Aligned_cols=156  Identities=19%  Similarity=0.154  Sum_probs=103.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC-----------cccccccCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRP   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~   74 (210)
                      .+.++|+++|.+|||||||+++|.+..+...+.|..... .......    .+.+||+||           ++.++..+.
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            467899999999999999999999887665555544222 1112222    578999999           456666655


Q ss_pred             cccc----CccEEEEEEECCChhHHH---------HHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC
Q 028362           75 LSYR----GADVFVLAFSLVSRASYE---------NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT  141 (210)
Q Consensus        75 ~~~~----~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~  141 (210)
                      .++.    .++++++|+|.++...+.         .....+...+..  .++|+++|+||+|+.+..             
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------  146 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------  146 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------
Confidence            5554    356778888875432210         001122333332  479999999999995431             


Q ss_pred             HHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          142 TAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       142 ~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .+...+++..++.        .+++++||++| |++++++++.+.+...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        147 DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            2234455555553        14789999999 9999999999887543

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=7.5e-23  Score=140.58  Aligned_cols=114  Identities=29%  Similarity=0.526  Sum_probs=88.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ||+|+|++|||||||+++|.+..+.  ..+.++....+. ...........+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988875  122222233332 2455677777799999999999988888889999999999


Q ss_pred             EECCChhHHHHHH--HHHHHHHhccCCCCcEEEEeeCcc
Q 028362           87 FSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD  123 (210)
Q Consensus        87 ~d~~~~~s~~~~~--~~~~~~~~~~~~~~piilv~nK~D  123 (210)
                      ||++++++++.+.  ..|+..+.....++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            9999999999873  235667766667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=3e-22  Score=144.00  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cCccEE
Q 028362           13 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   83 (210)
Q Consensus        13 llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~   83 (210)
                      |+|.+|||||||++++.+..+.....+...... ...+.+++  ..+.+|||||+..+...      +..++  .++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998764443334332222 33444554  46889999999877643      34445  489999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      ++|+|+++++...    .+...+..  .++|+++|+||+|+.+...          . ......+...++. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~----------~-~~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG----------I-KIDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc----------c-hhhHHHHHHhhCC-CeEEEEcc
Confidence            9999998865432    23223322  3689999999999976532          2 2234566666675 88999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIKVV  179 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~  179 (210)
                      ++.|++++++++.+.+
T Consensus       141 ~~~~~~~l~~~l~~~~  156 (158)
T cd01879         141 KGEGIDELKDAIAELA  156 (158)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00436 era GTP-binding protein Era

Probab=99.89  E-value=2.2e-22  Score=157.07  Aligned_cols=155  Identities=17%  Similarity=0.129  Sum_probs=107.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-c-------CcccccC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-L-------RPLSYRG   79 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~-------~~~~~~~   79 (210)
                      +|+++|.+|||||||+|+|.+..+..  ....|+..... .+...+ ...+.+|||||...... +       ....+.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999886532  22223322222 222222 24688999999754321 1       2345788


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|++++|+|+++..+..   ..++..+..  .+.|+++|+||+|+....           ...+....+....+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence            99999999999876653   334444443  368999999999996432           23344555555555557899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||++|.|++++++++.+.+...
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~  166 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEG  166 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCC
Confidence            99999999999999999887553

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.89  E-value=1.9e-22  Score=162.02  Aligned_cols=152  Identities=19%  Similarity=0.225  Sum_probs=105.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCcc---------cccccCccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRPLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   76 (210)
                      ..++|+++|.+|||||||+|+|.+..... ....++.+.....+.+.+ ...+.+|||+|..         .|+..+. .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle-~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLE-E  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHH-H
Confidence            44899999999999999999999876432 222222222333444432 2467889999972         2333222 4


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      +.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.....          +     .....  +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~~--~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLEE--GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHHh--CCC
Confidence            7789999999999999877665 55666665544 4789999999999964321          1     11111  123


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +++++||+++.|++++++++.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            57899999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=3.5e-22  Score=160.16  Aligned_cols=159  Identities=14%  Similarity=0.220  Sum_probs=108.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCc-------
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRP-------   74 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~-------   74 (210)
                      ..+.++|+++|.+|||||||+|+|.+..+..  ....++.......+..++  ..+.+|||||+.+ +..+..       
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            4567899999999999999999999887642  111122222222344444  4678999999843 322221       


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-  153 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (210)
                      ..+.++|++++|+|..+  ++......|++.+...  +.|+++|+||+|+...             ...++.+++.... 
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~  189 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHP  189 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCC
Confidence            23678999999999765  3444434556555442  4678899999998532             2344555555443 


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ..+++++||++|.|++++++++.+.+...
T Consensus       190 ~~~i~~iSAktg~gv~eL~~~L~~~l~~~  218 (339)
T PRK15494        190 DSLLFPISALSGKNIDGLLEYITSKAKIS  218 (339)
T ss_pred             CcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence            34789999999999999999999877643

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.89  E-value=3.5e-22  Score=159.16  Aligned_cols=156  Identities=20%  Similarity=0.218  Sum_probs=108.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccccc----ccCccc---ccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----RLRPLS---YRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~   79 (210)
                      ..|+|+|.++||||||++++....... .+.. |...... .+.++ ....+++||+||..+..    .+...+   +..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig-~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLG-VVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEE-EEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            468999999999999999999765322 2111 2111111 12222 23678899999975321    222233   456


Q ss_pred             ccEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           80 ADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        80 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ++++++|+|+++.   ..++.. ..|.+.+..+.   .+.|+++|+||+|+....           ...+..+.+++.++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~  303 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG  303 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence            9999999999976   556665 67777666553   478999999999996543           23344555666666


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      . +++++||++++|++++++++.+.+
T Consensus       304 ~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       304 K-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            4 789999999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=7.5e-22  Score=141.59  Aligned_cols=147  Identities=20%  Similarity=0.218  Sum_probs=102.0

Q ss_pred             EEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc--------cCcccccCcc
Q 028362           12 VTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   81 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~   81 (210)
                      +++|.+|||||||++++....  +.....++...........++  +.+.+||+||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999764  223333333333333344444  6788999999987644        3334678899


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++++|+|..++.+....  .+...+..  ...|+++|+||+|+.....          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~--~~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRK--SKKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHh--cCCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999876544332  23333333  2589999999999976432          1     2223345554678999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 028362          162 SKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~  179 (210)
                      ++++.|++++++++++.+
T Consensus       140 a~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         140 AEHGRGIGDLLDAILELL  157 (157)
T ss_pred             cccCCCHHHHHHHHHhhC
Confidence            999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=6.4e-23  Score=143.63  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=125.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS   76 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   76 (210)
                      ..+..+.|+|+|..++|||||+.+.....       ......||.+..... +.+.+  ..+.+||.+||+..+++|..|
T Consensus        13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~-i~v~~--~~l~fwdlgGQe~lrSlw~~y   89 (197)
T KOG0076|consen   13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGT-IEVCN--APLSFWDLGGQESLRSLWKKY   89 (197)
T ss_pred             hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecc-eeecc--ceeEEEEcCChHHHHHHHHHH
Confidence            44567899999999999999999887421       123445666665442 33343  567779999999999999999


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH---Hc
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK---QI  152 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  152 (210)
                      |..++++|+++|+++++.++.....+-..+.+-. .++|+++.+||.|+.+..            ...++.....   ..
T Consensus        90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~~  157 (197)
T KOG0076|consen   90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAELI  157 (197)
T ss_pred             HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhhc
Confidence            9999999999999999999887544544444443 689999999999998763            3444443333   22


Q ss_pred             --CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          153 --GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       153 --~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                        ...++.++||.+|+||++...|++..+.+.
T Consensus       158 ~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  158 PRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             CCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence              234788999999999999999999998876

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=7.9e-21  Score=130.49  Aligned_cols=167  Identities=26%  Similarity=0.331  Sum_probs=138.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccc-cccCcccccCccE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADV   82 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~   82 (210)
                      +.-||+++|..+||||+|+.++.-+..  ..+..||+++.|...+. .++..-.+.++||.|...+ ..+..+|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            567999999999999999999996553  34567888877765543 3456678899999998777 5677789999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +++|||..|++||+.+ +.+...+....  ..+|+++++||+|+.+...          +..+.+..|++.-.+ ..+++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999987 55555665554  5799999999999976665          889999999998886 77899


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCccc
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      ++.+...+-+.|..+...+..++.+
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCccc
Confidence            9999999999999999998877554

>cd04163 Era Era subfamily

Probab=99.88  E-value=2.2e-21  Score=140.16  Aligned_cols=158  Identities=17%  Similarity=0.125  Sum_probs=104.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc--------cCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   78 (210)
                      ...+|+++|++|+|||||++++.+...........................+.+||+||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999775432111111111111122233346788899999765432        2233477


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|++++|+|++++.+-  ....+.+.+...  +.|+++|+||+|+.....          ...+....+....+..+++
T Consensus        82 ~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~  147 (168)
T cd04163          82 DVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEIF  147 (168)
T ss_pred             hCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCceE
Confidence            89999999999987221  112333444332  589999999999974322          2344445555555456889


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ++|++++.|++++++++.+.
T Consensus       148 ~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         148 PISALKGENVDELLEEIVKY  167 (168)
T ss_pred             EEEeccCCChHHHHHHHHhh
Confidence            99999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.87  E-value=3.1e-21  Score=159.15  Aligned_cols=151  Identities=21%  Similarity=0.224  Sum_probs=110.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   76 (210)
                      ..++|+++|++|||||||+|+|.+..  +...+..++.+.+...+.+++  +.+.+|||||+.++...+        ..+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999864  334444454444455566666  456789999987654332        346


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++++|++++|+|++++.+.+..   |+..+..  .+.|+++|+||+|+...                ....+++..+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            7899999999999998876543   5544432  46899999999999532                11233445554 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.+||++ .||+++|+.+.+.+...
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~~  362 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINAF  362 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            78999998 69999999998887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=1.2e-21  Score=144.77  Aligned_cols=159  Identities=16%  Similarity=0.101  Sum_probs=109.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--------------eeeeE-EEEECCEEEEEEEEeCCCcccccccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--------------DNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRP   74 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~   74 (210)
                      +|+++|.+|+|||||++++..........++..              ..... ..........+.+||+||+.++...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999998765543222110              01100 111122246788999999999888888


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--  152 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (210)
                      .+++.+|++++|+|++++.+...  ..++..+..  .+.|+++|+||+|+.....        .........+..+..  
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~  148 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLIGF  148 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccccc
Confidence            88999999999999987654433  233334333  5799999999999975321        001223333333332  


Q ss_pred             -----------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          153 -----------GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       153 -----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                                 ...+++++||+++.|+++++.++.+.+.
T Consensus       149 ~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         149 ISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                       2358899999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.87  E-value=1.1e-21  Score=146.07  Aligned_cols=149  Identities=12%  Similarity=0.067  Sum_probs=101.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeee-EEEEECCEEEEEEEEeCCCcccccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLR   73 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~   73 (210)
                      -+|+++|.++||||||+++|..  +.+...+            .++.+.++. ....++...+.+.+||+||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  5554432            111222221 123344456788999999999999999


Q ss_pred             cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-
Q 028362           74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-  152 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (210)
                      ..+++++|++++|+|+++.. .... ..++..+..  .++|+++|+||+|+.....         ....+++..+...+ 
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            99999999999999998743 1221 233333332  4689999999999964321         01234444444222 


Q ss_pred             ------CCcEEEEeccCCCCCHHHH
Q 028362          153 ------GASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       153 ------~~~~~~~~Sa~~~~~i~~~  171 (210)
                            +. +++++||++|.|+.+.
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASLNL  173 (194)
T ss_pred             CccccCcc-CEEEeehhcccccccc
Confidence                  33 7899999999887443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.87  E-value=2e-21  Score=161.00  Aligned_cols=148  Identities=23%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc--------Cccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   76 (210)
                      ..++|+++|.+|||||||+|+|.+...  ......++.+.....+..++  ..+.+|||||.+++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            458999999999999999999998653  33333344333344455555  45788999998765432        1235


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +.++|++++|+|++++.++.+. ..|..     ..+.|+++|+||+|+.....          ..        ...+ .+
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~-~~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENG-KP  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccC-Cc
Confidence            7889999999999998877654 34433     35789999999999965432          11        1222 47


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++++||+++.|++++++++.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            8899999999999999999998754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=2.1e-21  Score=162.34  Aligned_cols=160  Identities=21%  Similarity=0.178  Sum_probs=108.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----------cccC-
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRLR-   73 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~-   73 (210)
                      ..++|+++|.+|||||||+++|.+...  ......++.+.+...+..++..  +.+|||||..+.          ..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998764  2233333333334445566654  468999996322          2211 


Q ss_pred             cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ..+++++|++++|+|++++.+..+.  .++..+..  .++|+++|+||+|+.....        ......+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2346899999999999998887765  34444433  4789999999999964321        0011112222112223


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ..+++++||++|.|++++|+.+.+.+.
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            358899999999999999999988764

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.87  E-value=1.9e-21  Score=142.23  Aligned_cols=153  Identities=22%  Similarity=0.245  Sum_probs=99.8

Q ss_pred             EECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccC---cccccCccEEE
Q 028362           13 TVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSYRGADVFV   84 (210)
Q Consensus        13 llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~---~~~~~~~~~~i   84 (210)
                      ++|++|||||||++++.+.... ..+..++.........++ ....+.+||+||...    .+.++   ...++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            5899999999999999987642 222222211111123333 145678899999743    22232   22467899999


Q ss_pred             EEEECCCh------hHHHHHHHHHHHHHhccC--------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           85 LAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        85 ~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      +|+|++++      .++.+. ..|...+....        .+.|+++|+||+|+.....          ...........
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~~  148 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELAL  148 (176)
T ss_pred             EEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHhc
Confidence            99999988      466665 55555554332        3689999999999975432          11111122222


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      . ...+++++||+++.|++++++++...
T Consensus       149 ~-~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         149 E-EGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             C-CCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            2 33478999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.87  E-value=3.5e-21  Score=138.03  Aligned_cols=145  Identities=23%  Similarity=0.277  Sum_probs=102.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc--------Cccccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR   78 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   78 (210)
                      ++|+++|++|+|||||++++.+....  ....++...........++  ..+.+||+||..++...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987532  2222222222222333343  56788999998665422        123567


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|++++|+|++++.+..+. ..+..     ..+.|+++|+||+|+.....          .       ..... ..+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~-~~~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLA-GKPII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccC-CCceE
Confidence            89999999999988777665 33322     35799999999999976542          1       22222 34889


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++||+++.|++++++++.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.87  E-value=1.7e-21  Score=140.40  Aligned_cols=142  Identities=17%  Similarity=0.123  Sum_probs=99.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----cccccCccEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVFVL   85 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~~i~   85 (210)
                      +|+++|.+|||||||++++.+.. ... .++...      .+...    .+||+||+......+    ...++.+|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~~~-~~~~~v------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-TLA-RKTQAV------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-ccC-ccceEE------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999987543 111 122221      22222    269999973222111    123679999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  164 (210)
                      |+|+++..++..   .|+..+   ..+.|+++++||+|+..             ...+.+.+++.+.+. .|++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999998876532   233222   24679999999999854             234556677777764 4899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      ++|++++|+++.+.+...
T Consensus       132 g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ccCHHHHHHHHHHhchhh
Confidence            999999999998877554

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=1.7e-21  Score=162.93  Aligned_cols=154  Identities=19%  Similarity=0.247  Sum_probs=107.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCce-eeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   76 (210)
                      ...+|+|+|.+|||||||+|+|.+.... ....|.. .+.........+.  .+.+|||||++.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4579999999999999999999987542 1223322 2223334445553  577899999763        23344557


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++.+|++|+|+|++++.+...  ..+...+..  .++|+++|+||+|+....             .+....+  ..+...
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~  175 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALW--SLGLGE  175 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence            889999999999998765543  345555543  479999999999986421             1111222  233334


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+++||++|.|++++|+++++.+..
T Consensus       176 ~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        176 PHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             eEEEEcCCCCCcHHHHHHHHhhccc
Confidence            4689999999999999999998865

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=4.2e-21  Score=163.51  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC-------CCCCCCCce------eeeeeE---EEEE---CCEEEEEEEEeCCCccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNK-------FPTDYIPTV------FDNFSA---NVVA---EGTTVNLGLWDTAGQED   68 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~~~---~~~~---~~~~~~~~i~D~~G~~~   68 (210)
                      .-+++++|+.++|||||+++|....       +...+..+.      +.++..   .+.+   ++..+.+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            4589999999999999999998641       222222221      222221   1212   46679999999999999


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  148 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      |...+..+++.+|++|+|+|+++..+.+.. ..|...+.   .++|+++|+||+|+....            ......++
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el  146 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI  146 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence            999999999999999999999987666654 44544332   368999999999986431            12223444


Q ss_pred             HHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          149 RKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       149 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ...++..  .++++||++|.|++++|+++.+.+..+.
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            4445542  4789999999999999999999886653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=9.9e-21  Score=154.61  Aligned_cols=156  Identities=22%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~   80 (210)
                      .|+|+|.||||||||++++++.+..-...|  |....+. .+.++ ....|++||+||....    ..+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG-~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG-VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE-EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            789999999999999999998653211112  2222221 12222 1356889999997432    2233333   4458


Q ss_pred             cEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      +++++|+|+++.   ..++.. ..|...+..+.   .++|++||+||+|+..              ..+.+..+.+.++ 
T Consensus       238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------------~~e~l~~l~~~l~-  301 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE--------------AEENLEEFKEKLG-  301 (424)
T ss_pred             CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC--------------CHHHHHHHHHHhC-
Confidence            999999999864   455554 67777777654   3789999999999842              2234556666666 


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      .+++++||++++|++++++++.+.+...+
T Consensus       302 ~~i~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        302 PKVFPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            47899999999999999999998876543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=6.7e-21  Score=142.67  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=89.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc-cEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   88 (210)
                      +|+++|++|||||+|+++|..+.+...+.++............+....+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988766654443221111111124457789999999999998888889998 99999999


Q ss_pred             CCCh-hHHHHHHHHHHHHHhc---cCCCCcEEEEeeCcccccc
Q 028362           89 LVSR-ASYENVLKKWIPELQH---YSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        89 ~~~~-~s~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~  127 (210)
                      .++. +++..+...+...+..   ..+.+|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9998 6777764444454432   2268999999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.86  E-value=3e-21  Score=130.90  Aligned_cols=158  Identities=22%  Similarity=0.259  Sum_probs=123.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+++|+.++|..++|||||++.|...... ...||.+.... . .-...++.+++||++||...+..|..|+.+.|++
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k-~-v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTK-K-VEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceE-E-EeecCcEEEEEEecCCccccchhhhhhhhccceE
Confidence            3468999999999999999999999976543 33555544322 2 2234568999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-------Cc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-------AS  155 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  155 (210)
                      |||+|.+|+..|+++.+.+.+.++... ..+|++|..||.|+.-..               ..+..+.+.+       .+
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---------------~~eeia~klnl~~lrdRsw  154 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---------------KVEEIALKLNLAGLRDRSW  154 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---------------chHHHHHhcchhhhhhceE
Confidence            999999999999998778888887766 789999999999995442               2233333322       34


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .+-++||.+++|+.+-.+|+....
T Consensus       155 hIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  155 HIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             EeeeCccccccCccCcchhhhcCC
Confidence            556799999999999888887543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.7e-20  Score=155.61  Aligned_cols=159  Identities=23%  Similarity=0.249  Sum_probs=109.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------   73 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   73 (210)
                      ...++|+++|.+|+|||||+++|.+...  ......++.+.+...+..++.  .+.+|||||..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            3568999999999999999999997652  233333444433444445554  57789999987665432          


Q ss_pred             -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHH-
Q 028362           74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRK-  150 (210)
Q Consensus        74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  150 (210)
                       ..+++.+|++++|+|++++.+..+.  .++..+..  .+.|+++|+||+|+....           ...++.. .+.. 
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~  312 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDE-----------KTREEFKKELRRK  312 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCH-----------HHHHHHHHHHHHh
Confidence             1357889999999999988776653  34444333  368999999999997221           1111221 2212 


Q ss_pred             --HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          151 --QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       151 --~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                        ..+..+++++||++|.|++++|+++.+.+..
T Consensus       313 ~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       313 LPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             cccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              2234589999999999999999999886653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.86  E-value=5.9e-21  Score=156.69  Aligned_cols=156  Identities=17%  Similarity=0.131  Sum_probs=104.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccc--cccCc------ccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSYRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~~------~~~~~   79 (210)
                      .+|+|+|.+|||||||+|+|.+........+ ++.+.....+...+. ..+.+|||+|..+.  ...+.      ..+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            6899999999999999999998654322222 222222223444432 25678999998432  12222      23678


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +|++++|+|++++.+.... ..|...+.... .++|+++|+||+|+.....           ..  .. . ...+...++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~-~-~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID-R-DEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH-H-HhcCCCceE
Confidence            9999999999998877765 44544444433 4799999999999964311           00  11 1 123332357


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+||++|.|++++++++.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998854

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=1.1e-20  Score=160.26  Aligned_cols=154  Identities=17%  Similarity=0.246  Sum_probs=108.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+..+|+++|++++|||||+++|....+.....+.....+. ..+..++. ..+++|||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            36689999999999999999999988776554443333322 22333322 26788999999999999988899999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--------CcE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--------ASY  156 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  156 (210)
                      +|+|+++...-+.. +.+ .....  .++|+++++||+|+....             .+........++        ..+
T Consensus       164 LVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~~-------------~e~v~~~L~~~g~~~~~~~~~~~  226 (587)
T TIGR00487       164 LVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEAN-------------PDRVKQELSEYGLVPEDWGGDTI  226 (587)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccCC-------------HHHHHHHHHHhhhhHHhcCCCce
Confidence            99999874322221 121 22221  478999999999996431             222222222222        247


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 028362          157 YIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      ++++||++|.|++++++++..
T Consensus       227 ~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       227 FVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEEECCCCCChHHHHHhhhh
Confidence            899999999999999999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.86  E-value=5e-21  Score=135.87  Aligned_cols=147  Identities=21%  Similarity=0.233  Sum_probs=98.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~   79 (210)
                      ++|+++|.||||||||+|+|.+.+..-...|...... ...+...+  ..+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999998875433334332222 33455566  55677999996444322      12222  57


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      .|+++.|+|+++.+.-..    +...+..  -++|+++++||+|+.....           ...+...+.+.++. |.++
T Consensus        79 ~D~ii~VvDa~~l~r~l~----l~~ql~e--~g~P~vvvlN~~D~a~~~g-----------~~id~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLY----LTLQLLE--LGIPVVVVLNKMDEAERKG-----------IEIDAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHH----HHHHHHH--TTSSEEEEEETHHHHHHTT-----------EEE-HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHHHHHH----HHHHHHH--cCCCEEEEEeCHHHHHHcC-----------CEECHHHHHHHhCC-CEEE
Confidence            999999999987543322    2222222  3699999999999987653           22246777788886 8999


Q ss_pred             eccCCCCCHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAA  175 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i  175 (210)
                      +||+++.|++++++.+
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999998765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.86  E-value=1.1e-20  Score=149.24  Aligned_cols=159  Identities=21%  Similarity=0.222  Sum_probs=108.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCC-ceeeeeeEEEEECCEEEEEEEEeCCCccccc--------ccCccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--------RLRPLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~   76 (210)
                      +.-.|+|+|.+|||||||+|+|.+...... ..| |+..... .+... ....+.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            556799999999999999999998765321 112 2222111 12222 23788999999975432        122235


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +.++|++++|+|++++.+  .....++..+..  .+.|+++|+||+|+.....          ........+....+..+
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKK--VKTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh--cCCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            678999999999988322  111333444432  3689999999999974322          23445556666566668


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++++||+++.|++++++++.+.+..
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~  172 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPE  172 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999999998754

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=8.8e-21  Score=141.01  Aligned_cols=161  Identities=15%  Similarity=0.104  Sum_probs=100.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC----CCCCCC-----CCceeeeeeEEEEE------------CCEEEEEEEEeCCCcc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN----KFPTDY-----IPTVFDNFSANVVA------------EGTTVNLGLWDTAGQE   67 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~------------~~~~~~~~i~D~~G~~   67 (210)
                      ++|+++|++++|||||+++|...    .+....     ..|....+. ...+            .+..+.+.+||+||+.
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFS-SFYVDKPKHLRELINPGEENLQITLVDCPGHA   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecce-EEEecccccccccccccccCceEEEEECCCcH
Confidence            58999999999999999999962    221111     122222211 1112            2346789999999997


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      .+..........+|++++|+|+++....... ..+. ....  .+.|+++|+||+|+.....        .....++..+
T Consensus        80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~  147 (192)
T cd01889          80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEE--------RERKIEKMKK  147 (192)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHH
Confidence            6533322345668999999999875443332 2221 1111  2579999999999864321        0011222222


Q ss_pred             HH-HH-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          148 LR-KQ-----IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       148 ~~-~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .. ..     ....+++++||+++.|++++++++.+++.-+
T Consensus       148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            11 11     1224789999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4e-21  Score=136.48  Aligned_cols=169  Identities=28%  Similarity=0.449  Sum_probs=139.8

Q ss_pred             CCCCCCc--eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE-EEEEEEEeCCCcccccccCcccc
Q 028362            1 MASSASR--FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNRLRPLSY   77 (210)
Q Consensus         1 m~~~~~~--~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~   77 (210)
                      |.+....  .++++++|+.|.||||++++...+.|...+.+|.+.......-..+. .+.|..||+.|++.+-.+...++
T Consensus         1 M~~p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy   80 (216)
T KOG0096|consen    1 MTSPPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY   80 (216)
T ss_pred             CCCCccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence            5554444  79999999999999999999999999999999998776554443333 49999999999999999999999


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      -.+...|++||++.+-.+.+. ..|..-+.+.+.++|+++.|||.|.....            .......+-+..+ ..+
T Consensus        81 I~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkkn-l~y  146 (216)
T KOG0096|consen   81 IQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKN-LQY  146 (216)
T ss_pred             EecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeeccc-cee
Confidence            999999999999999999998 78988888888889999999999997653            1122223333444 378


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +++||+++.|.+.-|-|+.+++...+
T Consensus       147 ~~iSaksn~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  147 YEISAKSNYNFERPFLWLARKLTGDP  172 (216)
T ss_pred             EEeecccccccccchHHHhhhhcCCC
Confidence            89999999999999999999887554

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=3.4e-20  Score=134.94  Aligned_cols=156  Identities=23%  Similarity=0.281  Sum_probs=101.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-----------C
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R   73 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   73 (210)
                      +.++|+++|.+|+|||||++++.+....  .....+...........++.  .+.+||+||..+....           .
T Consensus         1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHH
Confidence            3689999999999999999999976532  12222222222233444554  4678999997543211           1


Q ss_pred             cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHHc
Q 028362           74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI  152 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  152 (210)
                      ...+..+|++++|+|++++.+....  .+...+..  .+.|+++++||+|+.....          ...+. ...+.+..
T Consensus        79 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~  144 (174)
T cd01895          79 LKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKL  144 (174)
T ss_pred             HHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH----------HHHHHHHHHHHhhc
Confidence            1235689999999999988765543  33333332  3689999999999976521          11222 12222222


Q ss_pred             C---CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          153 G---ASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       153 ~---~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +   ..+++++||+++.|++++++++.+.
T Consensus       145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         145 PFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            2   3578999999999999999988763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.9e-21  Score=132.17  Aligned_cols=161  Identities=15%  Similarity=0.162  Sum_probs=124.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+..+++++|..|+||||+..++.-++.... .|+++....   .+..++..+++||++|+...+..|..|+.+.+++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            4789999999999999999999987765333 566644422   233477999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH----HHHcCCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL----RKQIGASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  160 (210)
                      |+|.+|+...--....+...+.... .+..+++++||.|.....            ...++...    ..+.....++.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~~Iv~t  159 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIWQIVKT  159 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhheeEEEee
Confidence            9999999877666566777777655 567888999999997663            22222111    111233578999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||.+|+|++++++|+.+.+..+
T Consensus       160 SA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  160 SAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             ccccccCCcHHHHHHHHHHhcc
Confidence            9999999999999999987653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=2.8e-20  Score=154.57  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSYR   78 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   78 (210)
                      ++|+|+|.+|||||||+|+|.+...  .....+++.+........++  ..+.+|||||++.        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999999999997763  23333333333333455555  6788999999976        2223445678


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|++++|+|+.++.+..+.  .+...+..  .+.|+++|+||+|+....              ....++ ..++...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~--~~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRK--SNKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence            99999999999875433321  22223332  268999999999974321              122222 244554578


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++||+++.|++++++++....
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998843

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=3.3e-20  Score=159.79  Aligned_cols=161  Identities=14%  Similarity=0.211  Sum_probs=110.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee---eeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .+...|+|+|..++|||||+++|....+.....+....   .+......++....+++|||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            46689999999999999999999977665433322211   122223334456889999999999999999989999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH---HHHHcC-CcEEE
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIG-ASYYI  158 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~  158 (210)
                      +|+|+|+++....+.. +.| ..+..  .++|+++++||+|+.....         ....+.+..   +....+ ..+++
T Consensus       322 aILVVDA~dGv~~QT~-E~I-~~~k~--~~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv  388 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAI-NYIQA--ANVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI  388 (742)
T ss_pred             EEEEEECcCCCChhhH-HHH-HHHHh--cCceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence            9999999875332221 222 22222  4789999999999965320         001111111   112222 35899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++||++|.|++++++++....
T Consensus       389 ~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        389 PISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EEECCCCCCHHHHHHhhhhhh
Confidence            999999999999999987754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.84  E-value=5.2e-20  Score=137.10  Aligned_cols=161  Identities=20%  Similarity=0.104  Sum_probs=103.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc----------cccccCc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRP   74 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~   74 (210)
                      ....++|+++|.+|||||||++++.+..+.....++.+.+.......  .+..+.+||+||..          .+..+..
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            34568999999999999999999998765444444443333222211  13678999999953          2223333


Q ss_pred             ccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .++..   .+++++|+|.+++.+....  .+...+..  .++|+++++||+|+.....        .....+.+......
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~  166 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence            34443   4678888998775443321  22233322  3689999999999965421        00112233344333


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          152 IGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .. .+++++||+++.|++++++.+.+.+.
T Consensus       167 ~~-~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        167 GD-DEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             cC-CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33 47889999999999999999987654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=6e-20  Score=149.19  Aligned_cols=160  Identities=18%  Similarity=0.172  Sum_probs=107.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccccc----cC---cccccCcc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYRGAD   81 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~~   81 (210)
                      .|+|+|.||||||||+|+|++.+..-...| |+.......+... ....+.++|+||..+-..    +.   ...+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            689999999999999999997654222222 2211111122222 224578899999743211    11   12467899


Q ss_pred             EEEEEEECC---ChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-
Q 028362           82 VFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-  154 (210)
Q Consensus        82 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (210)
                      ++++|+|++   +...+... ..|+..+..+.   .+.|+++|+||+|+.....           ..+....+....+. 
T Consensus       240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~  307 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE  307 (390)
T ss_pred             EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence            999999998   44455554 67777776654   3689999999999965431           23344455554442 


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .+++++||+++.|++++++++.+.+...
T Consensus       308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        308 GPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            2678999999999999999999988653

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.84  E-value=5.3e-20  Score=137.93  Aligned_cols=164  Identities=15%  Similarity=0.152  Sum_probs=101.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC---CC--CCceeeeeeE-EE-----------------------EEC--C----
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT---DY--IPTVFDNFSA-NV-----------------------VAE--G----   53 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~---~~--~~~~~~~~~~-~~-----------------------~~~--~----   53 (210)
                      ++|+++|+.|+|||||+..+.....+.   ..  ..+....+.. ..                       ...  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            478999999999999999997432111   00  0000000000 00                       000  1    


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                      ....+.+||+||++.|...+...+.++|++++|+|++++...... ...+..+... ...|+++|+||+|+.....    
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~----  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ----  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH----
Confidence            126789999999999887777778889999999999874111111 1122222221 2347999999999965321    


Q ss_pred             CCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          134 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                          .....+.+.++...+  ...+++++||+++.|++++++++.+.+..+
T Consensus       155 ----~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         155 ----ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             ----HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence                001123344444432  124789999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=1.9e-19  Score=156.31  Aligned_cols=158  Identities=16%  Similarity=0.248  Sum_probs=108.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+...|+++|..++|||||+++|....+.....+....... ..+..++  ..+++|||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            47789999999999999999999877665443333322221 2233444  56888999999999999988899999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH---HHHHHcC-CcEEEEe
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE---ELRKQIG-ASYYIEC  160 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~  160 (210)
                      +|+|+++...-+.. ..| .....  .++|+++++||+|+.....        . ....++.   .++..++ ..+++++
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~--~~vPiIVviNKiDl~~a~~--------e-~V~~eL~~~~~~~e~~g~~vp~vpv  432 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKA--AGVPIIVAINKIDKPGANP--------D-RVKQELSEYGLVPEEWGGDTIFVPV  432 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHh--cCCcEEEEEECccccccCH--------H-HHHHHHHHhcccHHHhCCCceEEEE
Confidence            99999874322221 222 12222  4689999999999965320        0 0111111   1122222 2489999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 028362          161 SSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~  178 (210)
                      ||++|.|++++|+++...
T Consensus       433 SAktG~GI~eLle~I~~~  450 (787)
T PRK05306        433 SAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             eCCCCCCchHHHHhhhhh
Confidence            999999999999998754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.83  E-value=1.6e-19  Score=149.40  Aligned_cols=159  Identities=16%  Similarity=0.141  Sum_probs=101.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccC---cccccCc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR---PLSYRGA   80 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~   80 (210)
                      ..|+|+|.||||||||+++|++.+..-...| |+.......+...+  ..|++||+||....    ..+.   -..+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            4789999999999999999997653322122 22111111223333  57899999996421    1111   1235679


Q ss_pred             cEEEEEEECCCh----hHHHHHHHHHHHHHhccC------------CCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362           81 DVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  144 (210)
Q Consensus        81 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~  144 (210)
                      +++|+|+|+++.    ..+... ..|...+..+.            .+.|++||+||+|+.....           ..+.
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e~  305 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAEF  305 (500)
T ss_pred             CEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHHH
Confidence            999999999753    233332 33333333221            3689999999999965432           1222


Q ss_pred             HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          145 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       145 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ........+. +++++||+++.|+++++.++.+.+...
T Consensus       306 l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        306 VRPELEARGW-PVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             HHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            2323334454 889999999999999999999887654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.83  E-value=1.3e-19  Score=154.28  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=112.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +.|+++|.+++|||||+++|.+.   .+.+++.+....++.. .+..++  ..+.+||+||++.|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999963   3333334444333322 233444  78899999999999887777889999999


Q ss_pred             EEEECCC---hhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC---CcEE
Q 028362           85 LAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---ASYY  157 (210)
Q Consensus        85 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  157 (210)
                      +|+|+++   +++.+.+     ..+..  .++| +++|+||+|+.+...        .....+++..+....+   ..++
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~--lgi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~i  143 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDL--LGIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKI  143 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHH--cCCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcE
Confidence            9999987   4444333     23322  2577 999999999965431        0012345555555543   3589


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +++||++|.|+++++.++...+....
T Consensus       144 i~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       144 FKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             EEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            99999999999999999887765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=1e-19  Score=150.96  Aligned_cols=152  Identities=21%  Similarity=0.252  Sum_probs=106.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc--------cccccCcccccC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYRG   79 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   79 (210)
                      +|+++|.+|||||||+|+|.+...  ......++.+........++  ..+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999999999998653  22323333333333444555  458889999963        233445567889


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|++++|+|..++.+...  ..+...+..  .++|+++|+||+|+.....           ..   .+ ...++..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d--~~i~~~l~~--~~~piilVvNK~D~~~~~~-----------~~---~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED--EEIAKWLRK--SGKPVILVANKIDGKKEDA-----------VA---AE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH--hCCCEEEEEECccCCcccc-----------cH---HH-HHhcCCCCeEE
Confidence            999999999987544332  233344433  3689999999999865431           11   12 23556667899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||+++.|++++++++.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.83  E-value=6.4e-20  Score=134.88  Aligned_cols=150  Identities=17%  Similarity=0.111  Sum_probs=95.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCccc----------ccccC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNRLR   73 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~   73 (210)
                      ..+.++|+++|.+|+|||||++++.+..+.....++.+.+.... ...++   .+.+||+||...          +..+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            45678999999999999999999998764333333433332222 12222   588999999532          22222


Q ss_pred             ccccc---CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           74 PLSYR---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        74 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      ..+++   .++++++|+|.+++-+..+.  .+...+..  .+.|+++++||+|+.....        .....+++++...
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~l~  159 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSE--------LNKQLKKIKKALK  159 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHH--------HHHHHHHHHHHHh
Confidence            33444   35799999999876544432  33344433  3689999999999964321        0023344444544


Q ss_pred             HcC-CcEEEEeccCCCCCHH
Q 028362          151 QIG-ASYYIECSSKTQQNVK  169 (210)
Q Consensus       151 ~~~-~~~~~~~Sa~~~~~i~  169 (210)
                      ..+ ..+++++||++++|++
T Consensus       160 ~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       160 KDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             hccCCCceEEEECCCCCCCC
Confidence            443 2378999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=8.3e-20  Score=155.78  Aligned_cols=162  Identities=17%  Similarity=0.186  Sum_probs=113.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCC------ceeeeeeE---EEE---ECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIP------TVFDNFSA---NVV---AEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~------~~~~~~~~---~~~---~~~~~~~~~i~D~~G~   66 (210)
                      ++.-+++++|+.++|||||+.+|...  .+..     ....      +.+.++..   .+.   .++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            45568999999999999999999852  2211     1100      11111111   111   1566799999999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  146 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      .+|...+..+++.+|++|+|+|+++....+.. ..|.....   .++|+++|+||+|+....            ......
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~~  148 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVKQ  148 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHHH
Confidence            99999899999999999999999987655543 34443322   368999999999986432            112223


Q ss_pred             HHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          147 ELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       147 ~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++...++.  ..++++||+++.|++++++++.+.+..+.
T Consensus       149 ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        149 EIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            34444443  24789999999999999999999886553

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=8.3e-19  Score=133.88  Aligned_cols=149  Identities=19%  Similarity=0.189  Sum_probs=98.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc----c---cCcccccCcc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----R---LRPLSYRGAD   81 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~~   81 (210)
                      +|+++|.+|+|||||+++|.+..... .+..++.......+.+++  ..+++||+||+.+..    .   .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999765322 222222111122333444  577889999985432    1   2234688999


Q ss_pred             EEEEEEECCChhH-HHHHHHHHHH-----------------------------------------HH-------------
Q 028362           82 VFVLAFSLVSRAS-YENVLKKWIP-----------------------------------------EL-------------  106 (210)
Q Consensus        82 ~~i~v~d~~~~~s-~~~~~~~~~~-----------------------------------------~~-------------  106 (210)
                      ++++|+|++++.. ...+ ...++                                         .+             
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 2222 11111                                         11             


Q ss_pred             ------------hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHH
Q 028362          107 ------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA  174 (210)
Q Consensus       107 ------------~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  174 (210)
                                  ......+|+++|+||+|+..               .+++..++..   .+++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                        11112369999999999943               3344455443   35788999999999999999


Q ss_pred             HHHHH
Q 028362          175 AIKVV  179 (210)
Q Consensus       175 i~~~~  179 (210)
                      +.+.+
T Consensus       221 i~~~L  225 (233)
T cd01896         221 IWDKL  225 (233)
T ss_pred             HHHHh
Confidence            98865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=2.8e-19  Score=151.58  Aligned_cols=166  Identities=18%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeeEEEEEC-------------CEEEEEEEEeCCCcccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVAE-------------GTTVNLGLWDTAGQEDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~   69 (210)
                      +..-|+++|.+++|||||+++|.+..+......    +.+..+.......             .....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            456799999999999999999998776443222    1122211100000             01123889999999999


Q ss_pred             cccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC-------CCCc
Q 028362           70 NRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVP  139 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~-------~~~~  139 (210)
                      ..++..+++.+|++++|+|+++   +.+++.+     ..+..  .++|+++++||+|+..........+       ....
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-----~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~  155 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ  155 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-----HHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence            9999989999999999999987   4444433     22222  3689999999999964321000000       0000


Q ss_pred             c-------CHHHHHHHH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          140 V-------TTAQGEELR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       140 ~-------~~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      +       ......++.             ...+..+++++||++|+|+++++.++....
T Consensus       156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            0       000001111             112335899999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1159 Era GTPase [General function prediction only]

Probab=99.82  E-value=5e-19  Score=135.24  Aligned_cols=162  Identities=16%  Similarity=0.153  Sum_probs=112.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc--------ccCc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--------RLRP   74 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~   74 (210)
                      ..+.--|+++|.||||||||+|++.+.+..  .....|+........+  ..+.++.++||||.-.-+        ....
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t--~~~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT--TDNAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE--cCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            346678999999999999999999998753  2212222222222222  236788899999953222        1222


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      ..+.++|+++||+|++.+..-.+  +..++.+..  .+.|+++++||+|......          ........+......
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~f  146 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLPF  146 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCCc
Confidence            34778999999999987544332  344455544  4689999999999877642          223444444455566


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ...+++||++|.|++.+.+.+...+.+.
T Consensus       147 ~~ivpiSA~~g~n~~~L~~~i~~~Lpeg  174 (298)
T COG1159         147 KEIVPISALKGDNVDTLLEIIKEYLPEG  174 (298)
T ss_pred             ceEEEeeccccCCHHHHHHHHHHhCCCC
Confidence            7889999999999999999999888654

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.81  E-value=6.2e-19  Score=150.35  Aligned_cols=145  Identities=18%  Similarity=0.224  Sum_probs=103.7

Q ss_pred             CCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Ccccc--cCccEEEE
Q 028362           15 GDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFVL   85 (210)
Q Consensus        15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~   85 (210)
                      |.+|||||||+|++.+......+.|....+. ......++  ..+++||+||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776444455443333 23344555  45788999999887654      22222  36899999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |+|.++.+...    .+...+.+  .++|+++|+||+|+.+...          + ..+.+.+++..+. +++++||+++
T Consensus        79 VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~----------i-~~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG----------I-RIDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC----------C-hhhHHHHHHHcCC-CEEEEECCCC
Confidence            99998754322    22222222  4789999999999975542          2 3346777888886 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIKVV  179 (210)
Q Consensus       166 ~~i~~~~~~i~~~~  179 (210)
                      +|++++++++.+..
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.81  E-value=4.4e-22  Score=140.94  Aligned_cols=168  Identities=27%  Similarity=0.442  Sum_probs=141.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE--EECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV--VAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      .+.+++.|+|.-|+|||+++.+++...|+..+..+++.++...+  ..+...+.+++||+.||++|..+..-+++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            35689999999999999999999999998888888887774432  2344557889999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      ++|||+++..+|+.. ..|.+.+....     ..+|+|+..||||......         ........+++++.+...++
T Consensus       103 ~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwt  172 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWT  172 (229)
T ss_pred             EEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCcccee
Confidence            999999999999987 78988776543     2578899999999976642         01235678888899998999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++|++.+.||+|+-..+++++.-+.
T Consensus       173 ets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  173 ETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             eeccccccChhHHHHHHHHHHHhhc
Confidence            9999999999999999999887654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.81  E-value=6.7e-20  Score=135.82  Aligned_cols=161  Identities=19%  Similarity=0.230  Sum_probs=107.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC--CCCC------------------CCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD------------------YIPTVFDNFSANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   65 (210)
                      ++.++|+++|+.++|||||+++|....  ....                  ..-+.... ............++++|+||
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~-~~~~~~~~~~~~i~~iDtPG   79 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLS-FISFEKNENNRKITLIDTPG   79 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSE-EEEEEBTESSEEEEEEEESS
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccc-cccccccccccceeeccccc
Confidence            467899999999999999999999432  1110                  00011111 11111124557888999999


Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      +.+|.......+..+|++|+|+|+.+.-....  ...+..+..  .++|+++++||+|+...+.         ....++.
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~--~~~p~ivvlNK~D~~~~~~---------~~~~~~~  146 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILRE--LGIPIIVVLNKMDLIEKEL---------EEIIEEI  146 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHH--TT-SEEEEEETCTSSHHHH---------HHHHHHH
T ss_pred             ccceeecccceecccccceeeeeccccccccc--ccccccccc--cccceEEeeeeccchhhhH---------HHHHHHH
Confidence            99998777778899999999999987644332  344444443  3688999999999974321         0111222


Q ss_pred             H-HHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          146 E-ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       146 ~-~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      . .+.+.++     ..|++++||.+|.|++++++.+.+.+.
T Consensus       147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            2 3434442     358999999999999999999988653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00880 Era_like Era (E

Probab=99.81  E-value=6e-19  Score=126.18  Aligned_cols=149  Identities=21%  Similarity=0.180  Sum_probs=101.0

Q ss_pred             EECCCCCCHHHHHHHHHcCCCC-CC-CCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc-------ccccCccEE
Q 028362           13 TVGDGAVGKTCMLICYTSNKFP-TD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   83 (210)
Q Consensus        13 llG~~~~GKStli~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~~~~~~~~   83 (210)
                      ++|++|+|||||++++.+.... .. ..++............ ....+.+||+||...+.....       .++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999976543 22 1222222222222222 146788999999877654443       367889999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH----HHHHHHcCCcEEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG----EELRKQIGASYYIE  159 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  159 (210)
                      ++|+|.++..+.... . +......  .+.|+++|+||.|+.....            ....    ..........++++
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~  143 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEE------------EEELLELRLLILLLLLGLPVIA  143 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhh------------HHHHHHHHHhhcccccCCceEE
Confidence            999999988777665 2 3333322  5799999999999976532            1111    11222233458899


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +||+++.|++++++++.+.
T Consensus       144 ~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         144 VSALTGEGIDELREALIEA  162 (163)
T ss_pred             EeeeccCCHHHHHHHHHhh
Confidence            9999999999999998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=8.8e-19  Score=152.94  Aligned_cols=157  Identities=20%  Similarity=0.212  Sum_probs=108.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-cccC----------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLR----------   73 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~----------   73 (210)
                      ..++|+++|.+|||||||+|+|.+...  ...+.+|+.+.+.....+++..  +.+|||||..+- +..+          
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999998763  3344445544444445566654  557999996421 1111          


Q ss_pred             cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH-HHHH-
Q 028362           74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRKQ-  151 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-  151 (210)
                      ...++.+|++++|+|++++.+..+. . +...+..  .++|+++|+||+|+.+..            ..+.... +... 
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~-~-i~~~~~~--~~~piIiV~NK~DL~~~~------------~~~~~~~~~~~~l  590 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDL-K-VMSMAVD--AGRALVLVFNKWDLMDEF------------RRQRLERLWKTEF  590 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHH-H-HHHHHHH--cCCCEEEEEEchhcCChh------------HHHHHHHHHHHhc
Confidence            1236789999999999998777764 2 3333332  468999999999996432            1111221 1111 


Q ss_pred             --cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          152 --IGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 --~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                        ....+.+.+||++|.|++++++.+.+.+..
T Consensus       591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              223467889999999999999999887764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=1.1e-18  Score=152.34  Aligned_cols=154  Identities=21%  Similarity=0.222  Sum_probs=103.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcee-eeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   76 (210)
                      ...+|+|+|.+|||||||+|+|.+.... ....|... .........++  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            4478999999999999999999976531 11123222 22222233344  4678899999763        22333446


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++.+|++|+|+|.++.-...  ...|...+..  .++|+++|+||+|+....              .....+. .++...
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~--d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--------------~~~~~~~-~lg~~~  412 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTST--DERIVRMLRR--AGKPVVLAVNKIDDQASE--------------YDAAEFW-KLGLGE  412 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHH--HHHHHHHHHh--cCCCEEEEEECcccccch--------------hhHHHHH-HcCCCC
Confidence            78999999999997643222  2345555543  579999999999985421              1112222 233334


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+++||++|.|++++++++++.+..
T Consensus       413 ~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        413 PYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             eEEEECCCCCCchHHHHHHHHhccc
Confidence            5789999999999999999998855

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.80  E-value=3.2e-18  Score=149.33  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=108.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------cc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------LS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~~   76 (210)
                      +.++|+++|.+|||||||+|++.+........|-...+. ....+...+..+.+||+||..++.....          .+
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~-k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVER-KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEee-EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            357999999999999999999997654333233222221 1222344556788899999987754221          12


Q ss_pred             --ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           77 --YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        77 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                        ...+|++++|+|.++.+....    +...+.+  .++|+++++||+|+.+...           ...+.+.+.+.++.
T Consensus        81 l~~~~aD~vI~VvDat~ler~l~----l~~ql~e--~giPvIvVlNK~Dl~~~~~-----------i~id~~~L~~~LG~  143 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNLY----LTLQLLE--LGIPCIVALNMLDIAEKQN-----------IRIDIDALSARLGC  143 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhHH----HHHHHHH--cCCCEEEEEEchhhhhccC-----------cHHHHHHHHHHhCC
Confidence              237899999999988654322    2223332  3699999999999975432           34556778888886


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                       |++++||.+++|++++.+.+.+..
T Consensus       144 -pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        144 -PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             -CEEEEEeecCCCHHHHHHHHHHhh
Confidence             899999999999999999887764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=3.5e-18  Score=142.05  Aligned_cols=161  Identities=19%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------   73 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   73 (210)
                      ...++|+++|.+|+|||||++++.+...  ......++..........++  ..+.+|||||........          
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3569999999999999999999997542  22333344333333444455  445779999975433221          


Q ss_pred             -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                       ..+++.+|++++|+|++++.+..+.  .+...+..  .+.|+++|+||+|+.....       . ....+.........
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~-------~-~~~~~~~~~~l~~~  316 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKT-------M-EEFKKELRRRLPFL  316 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHH-------H-HHHHHHHHHhcccc
Confidence             1356789999999999988766553  34444433  3689999999999963321       0 00111111111222


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      +..+++++||+++.|++++++.+.+...
T Consensus       317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        317 DYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             cCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3458999999999999999999877553

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.80  E-value=6.9e-19  Score=145.67  Aligned_cols=163  Identities=12%  Similarity=0.040  Sum_probs=101.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------CCC---------------ceeeeeeE-EEEEC
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------YIP---------------TVFDNFSA-NVVAE   52 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------~~~---------------~~~~~~~~-~~~~~   52 (210)
                      |+.+.+++|+++|.+++|||||+++|...  .....            ...               ..+.+... ...+.
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~   80 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE   80 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence            46788999999999999999999999832  11110            000               01111111 12233


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                      ...+.+.+||+||+++|.......+..+|++++|+|++++.++......++..+... ...|+++++||+|+.....   
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~---  156 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE---  156 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH---
Confidence            455788999999998886655556788999999999987322222112222233222 2246899999999965211   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 028362          133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  172 (210)
                         .......+++..+....+.    .+++++||++|.|+++..
T Consensus       157 ---~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        157 ---KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             ---HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence               0000233455556555553    478999999999998744

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.80  E-value=5.8e-19  Score=146.08  Aligned_cols=160  Identities=14%  Similarity=0.049  Sum_probs=102.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------------------------CCCceeeeeeEEEEECC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD-----------------------------YIPTVFDNFSANVVAEG   53 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   53 (210)
                      .+..++|+++|..++|||||+++|..  +.....                             .......+.. ...+..
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFET   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEcc
Confidence            56789999999999999999999985  222210                             0011111111 122334


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                      ..+.+.+||+||+++|.......+..+|++++|+|++++++.... ...++..... ....|+++++||+|+.+...   
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~---  158 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDE---  158 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccH---
Confidence            457889999999998866555567899999999999987433111 1111222222 22357999999999964211   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 028362          133 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  172 (210)
                         .......+++..++...+.    .+++++||+++.|+++.+
T Consensus       159 ---~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       159 ---EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence               0001234566667776653    478999999999998743

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=4.3e-18  Score=121.03  Aligned_cols=158  Identities=20%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCC--------CCCCC----CceeeeeeEEEEECCEEEEEEEEeCCCcccccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF--------PTDYI----PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      ......||++.|+-++||||++++++....        ...+.    .|...+|.....  +....+.++++|||++|+-
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DEDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cCcceEEEecCCCcHHHHH
Confidence            445778999999999999999999997653        11111    122233322222  2335678899999999999


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      +|..+.+++.++|+++|.+.+..+ +. ..++..+....+ +|++|..||.|+....            ..+...++...
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~  148 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKL  148 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHh
Confidence            999999999999999999999888 44 567777766544 9999999999998874            44444444443


Q ss_pred             c-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          152 I-GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       152 ~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      . -..+.++++|.++++..+.+..+...
T Consensus       149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         149 ELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccCCCceeeeecccchhHHHHHHHHHhh
Confidence            3 13488999999999999988887766

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.79  E-value=2.6e-19  Score=146.56  Aligned_cols=172  Identities=24%  Similarity=0.384  Sum_probs=129.4

Q ss_pred             CC-CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MA-SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~-~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+ ....+.+||+|+|+.|||||+||-.+....|.+. .|.....+.....+....+-.++.|++..++-+.....-++.
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~-VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eirk   79 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDA-VPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRK   79 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhcccc-ccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhh
Confidence            55 3455789999999999999999999999988665 343333333333333334457889998776665555667889


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHH-HHHHHHHc-CC
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI-GA  154 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~  154 (210)
                      ||++.+||+++++++++.+...|+..+.+..   .++|+|+||||+|.......          +.+. ..-+..++ .+
T Consensus        80 A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~Ei  149 (625)
T KOG1707|consen   80 ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEI  149 (625)
T ss_pred             cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHH
Confidence            9999999999999999999999999999987   68999999999999877541          1111 11111111 23


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ..+++|||++..++.++|......+..+-
T Consensus       150 EtciecSA~~~~n~~e~fYyaqKaVihPt  178 (625)
T KOG1707|consen  150 ETCIECSALTLANVSELFYYAQKAVIHPT  178 (625)
T ss_pred             HHHHhhhhhhhhhhHhhhhhhhheeeccC
Confidence            45789999999999999998888887653

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.78  E-value=1.7e-18  Score=120.41  Aligned_cols=136  Identities=21%  Similarity=0.232  Sum_probs=99.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc----ccccccCcccccCccEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~~~~i~   85 (210)
                      ||+++|+.|+|||||+++|.+....  +..|....|      .     =.++||||.    ..+.........+||.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~------~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY------Y-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEe------c-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            7999999999999999999987642  222222221      1     134899994    2333333345668999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |.|.+++.+...-  .+...+     +.|+|-|.||+|+..+.           ...+.+.++.+..|....|++|+.++
T Consensus        70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            9999987654332  222222     57999999999998433           46778888888889888899999999


Q ss_pred             CCHHHHHHHHH
Q 028362          166 QNVKAVFDAAI  176 (210)
Q Consensus       166 ~~i~~~~~~i~  176 (210)
                      +||+++.++|-
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999998763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.77  E-value=6.6e-18  Score=135.86  Aligned_cols=151  Identities=19%  Similarity=0.224  Sum_probs=108.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc---------ccCcccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   77 (210)
                      ..|+|+|-||||||||+|||.+.+.  .+.+..++.+.........+..  |.++||+|-+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            6799999999999999999998764  3444445555555555556644  7889999976432         2333457


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ..||++|||+|....-+-.+  +.+.+.+.  ..++|+++|+||+|.....              +...+| -.+|....
T Consensus        82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr--~~~kpviLvvNK~D~~~~e--------------~~~~ef-yslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPAD--EEIAKILR--RSKKPVILVVNKIDNLKAE--------------ELAYEF-YSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--hcCCCEEEEEEcccCchhh--------------hhHHHH-HhcCCCCc
Confidence            78999999999965433322  34444554  2469999999999986322              122333 34566678


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHh
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      +.+||..|.|+.++++++++.+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            89999999999999999999984

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.77  E-value=1.4e-17  Score=141.79  Aligned_cols=165  Identities=19%  Similarity=0.154  Sum_probs=101.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----ceeeeeeEEEEE---CCEEE----------EEEEEeCCCccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP----TVFDNFSANVVA---EGTTV----------NLGLWDTAGQED   68 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~----------~~~i~D~~G~~~   68 (210)
                      .++..|+++|.+++|||||+++|.+.........    +.+.++......   .+..+          .+++|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4667899999999999999999986544322221    222211110000   11111          168899999999


Q ss_pred             ccccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc-----
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV-----  140 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-----  140 (210)
                      |..++...+..+|++++|+|+++   +.++..+ .    .+..  .++|+++++||+|+................     
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-N----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888889999999999987   5555443 2    2222  478999999999985321100000000000     


Q ss_pred             -CHH-------HHHHHHHH--------------cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          141 -TTA-------QGEELRKQ--------------IGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       141 -~~~-------~~~~~~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                       ..+       +.......              .+..+++++||+++.|+++++..+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence             000       01111111              13357899999999999999988764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.77  E-value=7.4e-18  Score=121.93  Aligned_cols=153  Identities=18%  Similarity=0.120  Sum_probs=94.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCccc----------ccccCccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQED----------YNRLRPLSYR   78 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   78 (210)
                      .|+++|.+|+|||||++.+.++.+.....++.+.+.... ...++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999996555444444433222221 22222   788999999533          2223333333


Q ss_pred             ---CccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-HcC
Q 028362           79 ---GADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG  153 (210)
Q Consensus        79 ---~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  153 (210)
                         +.+++++++|..+..+... ....|+..     .+.|+++|+||+|+.....        ............+ ...
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~  144 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-----LGIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEI  144 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-----cCCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccC
Confidence               4568889999876532221 11233333     2589999999999954321        0011122222222 234


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ..+++++||+++.|++++++++.+.
T Consensus       145 ~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHh
Confidence            4578899999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=3.6e-17  Score=131.64  Aligned_cols=157  Identities=21%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------   74 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------   74 (210)
                      ..+||+|+|-|+||||||+|++.+..  .......|+.+.+......+++.+  .++||+|-.+-.....          
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhh
Confidence            56999999999999999999999765  334445566666666677777655  5599999654322211          


Q ss_pred             -ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH----HHHHHH
Q 028362           75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA----QGEELR  149 (210)
Q Consensus        75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~  149 (210)
                       ..+..++++++|+|++.+-+-++  ......+.+  ...+++||+||+|+.....          ...+    ++....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~~--~g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l  320 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIEE--AGRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL  320 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHHH--cCCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence             23567999999999988766555  355566555  4689999999999876532          2232    333333


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          150 KQIGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ...+..+.+.+||+++.+++++|+++....
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence            444566889999999999999999887654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.76  E-value=6.4e-18  Score=138.84  Aligned_cols=166  Identities=17%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCC--Cceeeee-----------------eEEEEECC------EEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYI--PTVFDNF-----------------SANVVAEG------TTVN   57 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~--~~~~~~~-----------------~~~~~~~~------~~~~   57 (210)
                      +..++|+++|..++|||||+++|.......   +..  -|....+                 ......++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            567999999999999999999997432111   100  0111110                 00000011      1467


Q ss_pred             EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362           58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  137 (210)
Q Consensus        58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~  137 (210)
                      +++||+||+++|...+......+|++++|+|++++...... ...+..+... ...|+++++||+|+.....        
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~--------  151 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK--------  151 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence            89999999999988777778889999999999864301111 2222233222 2347899999999975321        


Q ss_pred             CccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          138 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .....+++..+....  ...+++++||+++.|++++++++...+..
T Consensus       152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence            001123344444332  12488999999999999999999887653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK10218 GTP-binding protein; Provisional

Probab=99.75  E-value=4.5e-17  Score=138.71  Aligned_cols=164  Identities=13%  Similarity=0.084  Sum_probs=112.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------CCceeeeee-EEEEECCEEEEEEEEeCCCcccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTDY------------IPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      ..-+|+++|..++|||||+++|..  +.+....            ..+.+.++. ....+....+.+.+||+||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457899999999999999999996  4443321            112222222 2233445568899999999999999


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .+..+++.+|++++|+|+++....+.  ..++..+..  .++|.++++||+|+.....         ....+++..+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt--~~~l~~a~~--~gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT--RFVTKKAFA--YGLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH--HHHHHHHHH--cCCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            99999999999999999987643332  233333322  3689999999999875421         0122333333222


Q ss_pred             cC------CcEEEEeccCCCC----------CHHHHHHHHHHHHhCCc
Q 028362          152 IG------ASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       152 ~~------~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  183 (210)
                      .+      ..|++.+||++|.          ++..+++.+++.+..+.
T Consensus       151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            11      1478999999998          58899998888887653

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.75  E-value=3e-17  Score=140.44  Aligned_cols=160  Identities=16%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC---CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      -|+++|..++|||||+++|.+.   .+.++.......+.............+.+||+||+++|.......+..+|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            4789999999999999999853   2333322222222221111111223578899999999976666678899999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEEeccC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSK  163 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  163 (210)
                      +|+++...-+.  .+.+..+...  ++| +++|+||+|+.+...        .....+++..+....+  ..+++++||+
T Consensus        82 Vda~eg~~~qT--~ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VSA~  149 (614)
T PRK10512         82 VACDDGVMAQT--REHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTAAT  149 (614)
T ss_pred             EECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence            99987422111  2223333322  355 579999999965321        0012344555554444  2589999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      +|.|++++++.+.+....
T Consensus       150 tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        150 EGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCHHHHHHHHHhhcc
Confidence            999999999999875543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.74  E-value=2.3e-17  Score=135.61  Aligned_cols=168  Identities=17%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----CCceeeee-----------------eEEEEEC--C----E
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----IPTVFDNF-----------------SANVVAE--G----T   54 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~-----------------~~~~~~~--~----~   54 (210)
                      ...+..++|+++|..++|||||+.+|.....+...     -.|....+                 ......+  +    .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            45678899999999999999999999653211110     01111111                 0000011  0    1


Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                      ...+.+||+||+++|..........+|++++|+|++++. .-+.  ...+..+... ...|+++|+||+|+.+...    
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t--~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~----  156 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT--KEHLMALDII-GIKNIVIVQNKIDLVSKER----  156 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH--HHHHHHHHHc-CCCcEEEEEEeeccccchh----
Confidence            367899999999988665444556689999999998642 1111  1112222221 2246899999999965321    


Q ss_pred             CCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          134 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                          .....+++..+...+  ...+++++||+++.|++++++++.+.+..
T Consensus       157 ----~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 ----ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             ----HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence                001123444444332  12488999999999999999999887644

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.74  E-value=3.9e-17  Score=131.80  Aligned_cols=153  Identities=23%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc--------cc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------LS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~   76 (210)
                      .-++++++|.||||||||+|.|.+..  .......|+.+.....+.++|  +.+.+.||+|..+.....+        ..
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            34799999999999999999999765  334545566665666667777  6677799999876543322        24


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +..||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+.....               .... ...+-.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~-~~~~~~~  352 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESE-KLANGDA  352 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchh-hccCCCc
Confidence            7789999999999986332222  2222   2336799999999999977532               1111 1112226


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .+.+|++++.|++.+.+.+.+.+...
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc
Confidence            89999999999999999998877665

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.74  E-value=1.2e-17  Score=125.56  Aligned_cols=153  Identities=17%  Similarity=0.109  Sum_probs=92.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCC------------------------CCCc---eeeeeeE-EEEECCEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK--FPTD------------------------YIPT---VFDNFSA-NVVAEGTTVNLG   59 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~--~~~~------------------------~~~~---~~~~~~~-~~~~~~~~~~~~   59 (210)
                      ||+++|.+|+|||||+++|+...  ....                        ..+.   .+.+... ...+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            68999999999999999997421  1100                        0000   0001000 011122335678


Q ss_pred             EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCc
Q 028362           60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP  139 (210)
Q Consensus        60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~  139 (210)
                      +|||||+++|.......++.+|++++|+|++++..-..  ......+... ...++++|+||+|+.....      ....
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~~~  151 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLL-GIRHVVVAVNKMDLVDYSE------EVFE  151 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHc-CCCcEEEEEEchhcccCCH------HHHH
Confidence            89999998886655667889999999999987642221  1222222222 2245788999999964211      0000


Q ss_pred             cCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHH
Q 028362          140 VTTAQGEELRKQIGA--SYYIECSSKTQQNVKAV  171 (210)
Q Consensus       140 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  171 (210)
                      ....+...+...++.  .+++++||+++.|+++.
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            123445555666663  35899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=1.5e-17  Score=125.50  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=78.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCC-----------CCc------eeeeee---EEEEE---CCEEEEEEEEeCCCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPT------VFDNFS---ANVVA---EGTTVNLGLWDTAGQ   66 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~-----------~~~------~~~~~~---~~~~~---~~~~~~~~i~D~~G~   66 (210)
                      +|+++|+.|+|||||+++|.........           ..+      .+.++.   .....   ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999965432110           000      011111   01111   356789999999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      .+|......++..+|++++|+|+++..+...  ..++.....  .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9998878888999999999999987765543  344444332  358999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.73  E-value=3.6e-17  Score=139.37  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=109.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc--CCCCCCCCC------------ceeeeee-EEEEECCEEEEEEEEeCCCcccccccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS--NKFPTDYIP------------TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP   74 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~--~~~~~~~~~------------~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~   74 (210)
                      +|+++|..++|||||+++|+.  +.+......            ..+.++. ....+...++.+.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999985  333322110            0112221 1122333457889999999999998888


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-  153 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  153 (210)
                      .+++.+|++++|+|+++...-+  ...|+..+..  .++|+++++||+|+.....         ....++...+...++ 
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~q--T~~~l~~a~~--~~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~g~  149 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQ--TRFVLKKALE--LGLKPIVVINKIDRPSARP---------DEVVDEVFDLFAELGA  149 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHH--HHHHHHHHHH--CCCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhhcc
Confidence            8999999999999998753222  2455555444  3689999999999865321         012233333332221 


Q ss_pred             -----CcEEEEeccCCCC----------CHHHHHHHHHHHHhCCc
Q 028362          154 -----ASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       154 -----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  183 (210)
                           ..|++++||+++.          |++.+|+.+++.+..+.
T Consensus       150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence                 1378899999995          79999999999887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.73  E-value=5.5e-17  Score=124.06  Aligned_cols=114  Identities=16%  Similarity=0.089  Sum_probs=78.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC--C------CCCC-----CC---ceeeeee-EEEEECCEEEEEEEEeCCCccccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK--F------PTDY-----IP---TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL   72 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~--~------~~~~-----~~---~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~   72 (210)
                      +|+++|..|+|||||+++|....  .      ...+     .+   ..+..+. ....+....+.+.+||+||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999998531  1      0000     00   0011111 11222334578899999999999888


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +..+++.+|++++|+|.++.....  ...+...+..  .++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~--~~~~~~~~~~--~~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ--TRILWRLLRK--LNIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH--HHHHHHHHHH--cCCCEEEEEECccccCC
Confidence            888999999999999998765432  2455555544  36899999999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.73  E-value=2.5e-17  Score=125.75  Aligned_cols=175  Identities=15%  Similarity=0.130  Sum_probs=109.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc------c------ccc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED------Y------NRL   72 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~------~~~   72 (210)
                      ..+.+.|+++|.||||||||.|.+.+.+..........+.....-.+......+.++||||.-.      +      .+.
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            4688999999999999999999999988654433332223333233444567899999999421      1      112


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-----CCCCCc-cCHHHHH
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-----HPGLVP-VTTAQGE  146 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-----~~~~~~-~~~~~~~  146 (210)
                      ....+..||.+++|+|+++.....+  ...+..+..+ .++|-++|+||.|........-.     ..+... ...+..+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            2234667999999999997443332  2334444444 47899999999997765331110     000000 0111222


Q ss_pred             HHHHHc------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          147 ELRKQI------------GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       147 ~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .+...-            +...+|.+||++|+||+++-+++..++...
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            221111            122368899999999999999999887644

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1e-17  Score=116.84  Aligned_cols=157  Identities=17%  Similarity=0.236  Sum_probs=115.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.=|++++|..|+|||||++.|.+.+.. .+.||.-.+. ....+.+  ..|+.+|.+|+...++.|..++..++++++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTS-E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS-EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCCh-HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            34568999999999999999999988763 3455553331 1234444  788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH------HHHHcC-----
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE------LRKQIG-----  153 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----  153 (210)
                      .+|+.|.+.+.+....+-..+.... ..+|+++.+||+|.+...            +.++...      ++-..+     
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~  161 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLT  161 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccccc
Confidence            9999999999988665555555443 689999999999998763            2222221      111111     


Q ss_pred             -----CcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          154 -----ASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       154 -----~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                           ....+.+|...+.+--+.|.|+.+.
T Consensus       162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence                 1234568888888877888777654

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.73  E-value=9.6e-17  Score=121.67  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=96.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCce------------e---------eeee--EE--------------EEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV------------F---------DNFS--AN--------------VVAE   52 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~------------~---------~~~~--~~--------------~~~~   52 (210)
                      ||+++|+.++|||||+++|..+.+....-...            +         ..+.  ..              ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999766643111000            0         0000  00              0111


Q ss_pred             CEEEEEEEEeCCCcccccccCcccc--cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      .....+.++|+||+++|.......+  ..+|++++|+|+.....-.  ...++..+..  .++|+++|+||+|+.+... 
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~--d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~-  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM--TKEHLGLALA--LNIPVFVVVTKIDLAPANI-  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCEEEEEECccccCHHH-
Confidence            2345788899999998855433334  3689999999987654322  2344555444  3589999999999864421 


Q ss_pred             ccCCCCCCccCHHHHHHHHHH-------------------------cCCcEEEEeccCCCCCHHHHHHHHH
Q 028362          131 LADHPGLVPVTTAQGEELRKQ-------------------------IGASYYIECSSKTQQNVKAVFDAAI  176 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~  176 (210)
                             .....+++.++...                         ....|++.+||.+|+|++++...|.
T Consensus       156 -------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         156 -------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             -------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence                   00111222222211                         1134889999999999999987664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=3.1e-16  Score=120.42  Aligned_cols=153  Identities=18%  Similarity=0.236  Sum_probs=105.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccc----cCccc---ccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPLS---YRGA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~~---~~~~   80 (210)
                      .|-++|.||+|||||++++++.+-.- .|..|+ .....  ....+....+++-|+||..+-..    +-..|   +..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            45699999999999999999876432 222222 11111  12223334489999999654332    22223   4568


Q ss_pred             cEEEEEEECCCh---hHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           81 DVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        81 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      +.++||+|++.+   .-++.+ +.+..+++.+.   .+.|.++|+||+|+++..             ...+.+++..+..
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq~  341 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQN  341 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcCC
Confidence            999999999988   666655 45555555443   689999999999996432             2235777787776


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHH
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ...+++||++++|++++++.|.+.
T Consensus       342 ~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CcEEEeeeccccchHHHHHHHhhc
Confidence            568999999999999999887653

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.71  E-value=1.2e-16  Score=119.18  Aligned_cols=169  Identities=12%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee-eeeE--EEEECCEEEEEEEEeCCCcccccccC-----cccccC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSA--NVVAEGTTVNLGLWDTAGQEDYNRLR-----PLSYRG   79 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~   79 (210)
                      .+||+++|.+|+|||||+|.+.+........++.+. ....  ..........+.+||+||........     ...+..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            379999999999999999999986543322222211 0010  01111112368899999975432222     222567


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCC-CCccCHHHHHHHHH----H--c
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG-LVPVTTAQGEELRK----Q--I  152 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~--~  152 (210)
                      +|++++|.+.    .+......|+..+...  +.|+++|+||+|+............ ......+...+.+.    .  .
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            8888887432    2333334566666654  5799999999999543221100000 00011122222222    2  1


Q ss_pred             CCcEEEEeccC--CCCCHHHHHHHHHHHHhCC
Q 028362          153 GASYYIECSSK--TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       153 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~  182 (210)
                      ...+++.+|+.  .+.++..+.+.|...+.+.
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence            23477889998  5689999999998888654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.71  E-value=2.3e-16  Score=117.16  Aligned_cols=150  Identities=19%  Similarity=0.182  Sum_probs=94.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--------CC---CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccccccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKF--------PT---DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRL   72 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~--------~~---~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~   72 (210)
                      +++|+++|..++|||||+++|....-        ..   ...+   ..+.+... ..........+.++||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            58999999999999999999985310        00   0000   01111111 1222334467788999999888766


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      ....+..+|++++|+|+...-.-.  ....+..+..  .++| ++++.||+|+.....       ......+++..+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~--~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~  150 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQ--TREHLLLARQ--VGVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK  150 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence            666788999999999997653222  2333444443  2466 778899999863221       001123455555555


Q ss_pred             cCC----cEEEEeccCCCCCH
Q 028362          152 IGA----SYYIECSSKTQQNV  168 (210)
Q Consensus       152 ~~~----~~~~~~Sa~~~~~i  168 (210)
                      .+.    .+++++||.+|.|+
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             hcccccCCeEEEeeCccccCC
Confidence            542    58999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.69  E-value=6.8e-17  Score=122.47  Aligned_cols=155  Identities=14%  Similarity=0.025  Sum_probs=91.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC--CCCC--------------C----------CCCc---eeeeee-EEEEECCEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN--KFPT--------------D----------YIPT---VFDNFS-ANVVAEGTTVNLG   59 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~--~~~~--------------~----------~~~~---~~~~~~-~~~~~~~~~~~~~   59 (210)
                      +|+++|..++|||||+.+|+..  ....              .          ..+.   .+.+.. ....+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            4899999999999999999732  1110              0          0000   001100 0112223457889


Q ss_pred             EEeCCCcccccccCcccccCccEEEEEEECCChhH-----H-HHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-----Y-ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~-~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                      +||+||+..|...+...+..+|++++|+|+++...     . ......+ ..... ....|+++++||+|+.....   .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~iiivvNK~Dl~~~~~---~  155 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART-LGVKQLIVAVNKMDDVTVNW---S  155 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH-cCCCeEEEEEEccccccccc---c
Confidence            99999998887666667788999999999988421     1 1111222 22222 22468999999999973210   0


Q ss_pred             CCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          134 HPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                       ........+++..+....+.    .+++++||++|.||++
T Consensus       156 -~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         156 -EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             -HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence             00000122333334444433    5799999999999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.69  E-value=9.9e-16  Score=128.62  Aligned_cols=157  Identities=17%  Similarity=0.190  Sum_probs=113.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCc------cc-c-
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRP------LS-Y-   77 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~------~~-~-   77 (210)
                      +.++|+++|+||||||||+|++.+.+..-.+.|-...+- .......+  ..+++.|+||-........      .+ + 
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            346799999999999999999998776555555543332 22344444  4477899999655432211      12 2 


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .++|+++-|+|+++-+.-..+   -++.++   -+.|++++.|+.|......           ..-+.+++.+.+|. |.
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE---~g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV  141 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYL---TLQLLE---LGIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV  141 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHH---HHHHHH---cCCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence            347999999999887754433   233333   3789999999999988753           45567788889997 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +++||+.|.|++++...+.+....+.
T Consensus       142 v~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         142 VPTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEEeecCCCHHHHHHHHHHhccccc
Confidence            99999999999999999987665544

>COG2262 HflX GTPases [General function prediction only]

Probab=99.69  E-value=6e-16  Score=122.94  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=110.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   75 (210)
                      +....|.++|..|+|||||+|++.+.... .....++-+.....+...+ +..+.+-||.|..+-         ++... 
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLE-  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLE-  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHH-
Confidence            45689999999999999999999965432 3333333333344455543 345667999996432         22222 


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      -...+|.++.|+|+++|.....+ ......+.... .++|+|+|.||+|+....               .......... 
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-  330 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-  330 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-
Confidence            25579999999999999666555 66667777665 679999999999986442               1122222222 


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ...+.+||+++.|++.+.+.|...+...
T Consensus       331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         331 PNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            1467899999999999999999888743

>PRK12736 elongation factor Tu; Reviewed

Probab=99.68  E-value=9.9e-16  Score=125.50  Aligned_cols=166  Identities=19%  Similarity=0.178  Sum_probs=104.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-----------~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ..++.++|+++|..++|||||+++|.......           ...+   ..+.+... ...+......+.+||+||+++
T Consensus         8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736          8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence            35678999999999999999999998521100           0000   11111111 122333456778999999998


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++++|+|+++...-..  ...+..+...  ++| +|+++||+|+.....       ......+++..
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~~  156 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVRE  156 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence            86655556678999999999986432221  2333343332  577 678899999864321       00012235555


Q ss_pred             HHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHh
Q 028362          148 LRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVI  180 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~  180 (210)
                      +....+.    .+++++||+++.        +++++++.+.+.+.
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            5555543    489999999983        57788877777654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.67  E-value=3.1e-16  Score=118.53  Aligned_cols=168  Identities=20%  Similarity=0.283  Sum_probs=103.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCC---CCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-----cCcccccCcc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYRGAD   81 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~   81 (210)
                      ||+++|+.++||||+.+.+..+..+...   .+|...  .....-....+.|.+||+|||..+-.     .....++++.
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            7999999999999999888866533221   123322  22222234456889999999976633     3456789999


Q ss_pred             EEEEEEECCChhHHHHH--HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEE
Q 028362           82 VFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYY  157 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  157 (210)
                      ++|||+|+.+.+-.+.+  ....+..+....|++.+-++.+|.|+..+....    +......+.+.+.+...+  ...+
T Consensus        79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~~  154 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDITF  154 (232)
T ss_dssp             EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred             EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceEE
Confidence            99999999844422222  234455566667899999999999986543200    000012233344444444  2367


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +.||.-+ +.+.+++..+++.+....+
T Consensus       155 ~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  155 FLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             EEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             EeccCcC-cHHHHHHHHHHHHHcccHH
Confidence            8899888 6899999999999886533

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.67  E-value=1e-15  Score=125.47  Aligned_cols=166  Identities=19%  Similarity=0.184  Sum_probs=104.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC-------CCCC----CCCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT----DYIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~-------~~~~----~~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ..++.++|+++|..++|||||+++|...       .+..    ...+   ..+.+... ...+......+.++|+||+++
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            4567899999999999999999999852       1100    0000   01111111 122333445678999999988


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++++|+|+.+...-+.  ..++..+..  .++|.+ +++||+|+.....       ......+++..
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~  156 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHH-------HHHHHHHHHHH
Confidence            86655566788999999999987432222  233333332  357855 5799999964321       01122345666


Q ss_pred             HHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028362          148 LRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI  180 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  180 (210)
                      +...++.    .+++++||.++.          ++.++++.+.+.+.
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            6666542    578999999984          57777777776554

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.66  E-value=1.4e-15  Score=124.65  Aligned_cols=152  Identities=20%  Similarity=0.178  Sum_probs=95.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC-------CCC----CCCC---ceeeeee-EEEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK-------FPT----DYIP---TVFDNFS-ANVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~-------~~~----~~~~---~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      +.++.++|+++|..++|||||+++|....       +..    ...+   ..+.+.. ....++.....+.+||+||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            45688999999999999999999997320       000    0000   0111111 1122344556788999999998


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |..........+|++++|+|+.+....+.  ...+..+..  .++|.+ +++||+|+.+...       ......+++..
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~~  156 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEEecccCCHHH-------HHHHHHHHHHH
Confidence            86655555677899999999987432222  233333332  256755 6899999865321       00012345666


Q ss_pred             HHHHcCC----cEEEEeccCCCC
Q 028362          148 LRKQIGA----SYYIECSSKTQQ  166 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa~~~~  166 (210)
                      +...++.    .+++++||.++.
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       157 LLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHhcCCCccCccEEECcccccc
Confidence            7776653    589999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd00066 G-alpha G protein alpha subunit

Probab=99.66  E-value=3.9e-15  Score=118.56  Aligned_cols=129  Identities=14%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----------hHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKL  122 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piilv~nK~  122 (210)
                      ..+.+.+||++||...+..|..++.+++++++|+|+++.          ..+.+....+-..+.... .++|++|++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            457788999999999999999999999999999999874          445555445555555443 689999999999


Q ss_pred             ccccccccccC------CCCCCccCHHHHHHHHHH-----c----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          123 DLREDKHYLAD------HPGLVPVTTAQGEELRKQ-----I----GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       123 D~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+..+.-...+      ...-.....+.+..+...     .    .....+.++|.+..++..+|+.+.+.+...
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            97655321110      000001233444433332     1    122345689999999999999998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=9.9e-16  Score=123.26  Aligned_cols=165  Identities=18%  Similarity=0.192  Sum_probs=117.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCC-----CCCCCce------eeee-----eEEEEE-CCEEEEEEEEeCC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFP-----TDYIPTV------FDNF-----SANVVA-EGTTVNLGLWDTA   64 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~-----~~~~~~~------~~~~-----~~~~~~-~~~~~~~~i~D~~   64 (210)
                      ..++.-++.++-.-..|||||..|+...  .+.     .+...+.      +.++     ...+.. ++++|.|+++|||
T Consensus         5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP   84 (603)
T COG0481           5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP   84 (603)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence            3345567899999999999999999842  121     1111111      1222     222332 5688999999999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  144 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~  144 (210)
                      ||-+|.......+..|.++++|+|++..-..+.+. +....++   .+.-++-|.||+|++..+.            ..-
T Consensus        85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlA-N~YlAle---~~LeIiPViNKIDLP~Adp------------erv  148 (603)
T COG0481          85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA-NVYLALE---NNLEIIPVLNKIDLPAADP------------ERV  148 (603)
T ss_pred             CccceEEEehhhHhhCCCcEEEEECccchHHHHHH-HHHHHHH---cCcEEEEeeecccCCCCCH------------HHH
Confidence            99999998899999999999999999877666663 3333333   4678899999999987642            112


Q ss_pred             HHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          145 GEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       145 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ..+...-.|  ....+.+|||+|.||+++++.+++.+..+.-
T Consensus       149 k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         149 KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence            222222233  3456789999999999999999999987753

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.64  E-value=3.2e-16  Score=113.70  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE-CCEEEEEEEEeCCCcccccccCcc---cccCccEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL---SYRGADVF   83 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~~   83 (210)
                      .-.|+|+|++|+|||+|+.+|..+...+...+. .....  ..+ ....-.+.++|+||+++.+.....   +..++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            357999999999999999999999665443333 22211  111 223346788999999998763333   47789999


Q ss_pred             EEEEECCC-hhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccc
Q 028362           84 VLAFSLVS-RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED  127 (210)
Q Consensus        84 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~  127 (210)
                      |||+|.+. +..+.++.+.++..+....   ..+|++|+.||+|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999973 5566666566666555433   57899999999999765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01850 CDC_Septin CDC/Septin

Probab=99.63  E-value=1.4e-14  Score=113.20  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=87.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCceeee-eeEEEEECCEEEEEEEEeCCCccccc------
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYN------   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~------   70 (210)
                      .++|+++|.+|+|||||+|+|.+..+...          ..+|.... +...+..++..+.+++|||||..++.      
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998775433          23333222 23345567888999999999943321      


Q ss_pred             --------------------ccCcccccC--ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           71 --------------------RLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        71 --------------------~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                                          ......+.+  +++++++++.+.. .+......++..+.   ..+|+++|+||+|+....
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~  159 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE  159 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence                                112133443  5677777776542 12111123344443   268999999999995432


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362          129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      .        .......+.+.+..+++ +++....
T Consensus       160 e--------~~~~k~~i~~~l~~~~i-~~~~~~~  184 (276)
T cd01850         160 E--------LKEFKQRIMEDIEEHNI-KIYKFPE  184 (276)
T ss_pred             H--------HHHHHHHHHHHHHHcCC-ceECCCC
Confidence            1        00244556677777776 5555444

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=105.42  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=101.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCC----------cccccccCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLRP   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G----------~~~~~~~~~   74 (210)
                      ....-|+++|-+|||||||+|++.+++--.....|.+.+.... +.+++.   +.++|+||          ++....+..
T Consensus        22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            3557899999999999999999999763222222333332222 223332   67899999          334445555


Q ss_pred             ccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           75 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .|+..   -.++++++|+..+....+  ..+++.+..  .++|+++|+||+|......           ........++.
T Consensus        99 ~YL~~R~~L~~vvlliD~r~~~~~~D--~em~~~l~~--~~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~~  163 (200)
T COG0218          99 EYLEKRANLKGVVLLIDARHPPKDLD--REMIEFLLE--LGIPVIVVLTKADKLKKSE-----------RNKQLNKVAEE  163 (200)
T ss_pred             HHHhhchhheEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEccccCChhH-----------HHHHHHHHHHH
Confidence            55554   347888889866554433  355555555  4799999999999976532           11122333322


Q ss_pred             cC----Cc-EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          152 IG----AS-YYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 ~~----~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +.    .. .++..|+.++.|++++...|.+.+..
T Consensus       164 l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         164 LKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             hcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22    11 16679999999999999888876643

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.4e-14  Score=118.34  Aligned_cols=163  Identities=20%  Similarity=0.175  Sum_probs=115.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc--CCCCCC-CC----------CceeeeeeE-E---EEECCEEEEEEEEeCCCcccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTD-YI----------PTVFDNFSA-N---VVAEGTTVNLGLWDTAGQEDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~--~~~~~~-~~----------~~~~~~~~~-~---~~~~~~~~~~~i~D~~G~~~~   69 (210)
                      +.-++.|+-.-..|||||..+|+.  +..+.. ..          ...+.++.. +   ...+++.+.+.++|||||-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            445789999999999999999984  211110 00          001222211 1   223478899999999999999


Q ss_pred             cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362           70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  149 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (210)
                      .......+..++++|+|+|++..-..+.....|+ .++   .+..+|.|+||+|++..+.         .....+..++.
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~l-Afe---~~L~iIpVlNKIDlp~adp---------e~V~~q~~~lF  205 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYL-AFE---AGLAIIPVLNKIDLPSADP---------ERVENQLFELF  205 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHH-HHH---cCCeEEEeeeccCCCCCCH---------HHHHHHHHHHh
Confidence            9999999999999999999998877777643343 333   3688999999999987642         01222333333


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          150 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ...+ .+.+.+||++|.|++++++++++.+..+.
T Consensus       206 ~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  206 DIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPK  238 (650)
T ss_pred             cCCc-cceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence            3333 37888999999999999999999987664

>CHL00071 tufA elongation factor Tu

Probab=99.63  E-value=6.1e-15  Score=121.41  Aligned_cols=152  Identities=19%  Similarity=0.144  Sum_probs=96.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP----------------TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      +++..++|+++|.+++|||||+++|....-.                .+..+....+.. ...+......+.+.|+||+.
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~-~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTA-HVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEcc-EEEEccCCeEEEEEECCChH
Confidence            4578899999999999999999999863110                000011111100 11223344567889999998


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  146 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      +|.......+..+|++++|+|+.....-+  ....+..+..  .++| +|++.||+|+.....       ......+++.
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~q--t~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~  155 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQ--TKEHILLAKQ--VGVPNIVVFLNKEDQVDDEE-------LLELVELEVR  155 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHH--HHHHHHHHHH--cCCCEEEEEEEccCCCCHHH-------HHHHHHHHHH
Confidence            88666666778899999999997643222  1333334333  3578 778899999965321       0001234555


Q ss_pred             HHHHHcCC----cEEEEeccCCCCC
Q 028362          147 ELRKQIGA----SYYIECSSKTQQN  167 (210)
Q Consensus       147 ~~~~~~~~----~~~~~~Sa~~~~~  167 (210)
                      .+....+.    .+++++||.++.|
T Consensus       156 ~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        156 ELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHhCCCCCcceEEEcchhhccc
Confidence            55555542    5899999998864

>cd04169 RF3 RF3 subfamily

Probab=99.62  E-value=8e-15  Score=113.99  Aligned_cols=115  Identities=17%  Similarity=0.132  Sum_probs=77.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC--CCCCC--------CCCce----------eeee-eEEEEECCEEEEEEEEeCCCcc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN--KFPTD--------YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~--~~~~~--------~~~~~----------~~~~-~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      -+|+|+|.+|+|||||+++|...  .....        ...+.          +..+ .....+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            46999999999999999999842  11110        00000          0111 1112344456888999999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +|.......++.+|++|+|+|+++.....  ...+......  .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~--~~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ--TRKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH--HHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            88776666789999999999998754322  1344444333  36899999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.62  E-value=2.1e-14  Score=113.85  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCC------CCCCceeeeeeEE----------------EEECC-EEEEEEEEeCCCc-
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPT------DYIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ-   66 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~----------------~~~~~-~~~~~~i~D~~G~-   66 (210)
                      |+++|.++||||||+++|.+.....      ...|+.+..+...                ..+++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            5799999999999999999876432      1223332222110                00122 3477999999997 


Q ss_pred             ---ccccccCccc---ccCccEEEEEEECC
Q 028362           67 ---EDYNRLRPLS---YRGADVFVLAFSLV   90 (210)
Q Consensus        67 ---~~~~~~~~~~---~~~~~~~i~v~d~~   90 (210)
                         ++++.+...+   +++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               4455544444   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.62  E-value=4.7e-14  Score=108.95  Aligned_cols=153  Identities=20%  Similarity=0.196  Sum_probs=101.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----c---ccCcccccC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----N---RLRPLSYRG   79 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~---~~~~~~~~~   79 (210)
                      --+|+++|.|+||||||+++|.+...... |..|+-...-.-+  ..++..+++.|+||.-.-    +   ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l--~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGML--EYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceE--eecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            36899999999999999999998764322 2222211111112  334577888999984322    1   234567899


Q ss_pred             ccEEEEEEECCChhH-HHHHHHH---------------------------------------------------------
Q 028362           80 ADVFVLAFSLVSRAS-YENVLKK---------------------------------------------------------  101 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s-~~~~~~~---------------------------------------------------------  101 (210)
                      ||++++|.|+....+ .+-+..+                                                         
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986544 2222111                                                         


Q ss_pred             --------HHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 028362          102 --------WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  173 (210)
Q Consensus       102 --------~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  173 (210)
                              +...+......+|.+.|.||.|+.               ..++...+.+..   ..+.+||..+.|++++.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~---------------~~e~~~~l~~~~---~~v~isa~~~~nld~L~e  282 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLP---------------GLEELERLARKP---NSVPISAKKGINLDELKE  282 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEeccccc---------------CHHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence                    111111111125889999999994               445566666555   568899999999999999


Q ss_pred             HHHHHHh
Q 028362          174 AAIKVVI  180 (210)
Q Consensus       174 ~i~~~~~  180 (210)
                      .|++.+.
T Consensus       283 ~i~~~L~  289 (365)
T COG1163         283 RIWDVLG  289 (365)
T ss_pred             HHHHhhC
Confidence            9999874

>smart00275 G_alpha G protein alpha subunit

Probab=99.60  E-value=1.8e-14  Score=115.62  Aligned_cols=128  Identities=16%  Similarity=0.205  Sum_probs=86.7

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----------hHHHHHHHHHHHHHhccC-CCCcEEEEeeCcc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLD  123 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D  123 (210)
                      .+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+-..+.... .++|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            36678999999999999999999999999999999973          345555444555555433 6899999999999


Q ss_pred             cccccccccC-----CCCCCccCHHHHHHHHHH-----cC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          124 LREDKHYLAD-----HPGLVPVTTAQGEELRKQ-----IG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       124 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +....-...+     +........+.+..+...     ..     ....+.++|.+..++..+|+.+...+...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            8765321110     000011233333333222     11     12445688999999999999988877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK13351 elongation factor G; Reviewed

Probab=99.59  E-value=9.5e-15  Score=127.63  Aligned_cols=115  Identities=17%  Similarity=0.145  Sum_probs=81.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC--C------CCC------------CCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK--F------PTD------------YIPTVFDNFSANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~--~------~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   65 (210)
                      .+..+|+|+|..++|||||+++|....  .      ...            +..|.....   .......+.+.+|||||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtPG   82 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTPG   82 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECCC
Confidence            456899999999999999999998421  1      000            111111111   11222357889999999


Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +.+|...+..+++.+|++++|+|.++..+.... ..| ..+..  .++|+++++||+|+...
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCC
Confidence            999988888899999999999999887665543 333 33333  36899999999998754

>PRK00049 elongation factor Tu; Reviewed

Probab=99.59  E-value=2.4e-14  Score=117.34  Aligned_cols=165  Identities=18%  Similarity=0.169  Sum_probs=101.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC------C-----CCC---ceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT------D-----YIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~------~-----~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ..+..++|+++|..++|||||+++|.......      .     ..+   ..+.+... ...+......+.++|+||+.+
T Consensus         8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence            34678999999999999999999998621100      0     000   01111111 122333445678899999988


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++++|+|+.....-.  ...++..+..  .++|.+ +++||+|+.....       .......++..
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q--t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ--TREHILLARQ--VGVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH--HHHHHHHHHH--cCCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence            8665566778999999999997653322  2334444443  357876 5799999964321       00012234444


Q ss_pred             HHHHcC----CcEEEEeccCCCC----------CHHHHHHHHHHHH
Q 028362          148 LRKQIG----ASYYIECSSKTQQ----------NVKAVFDAAIKVV  179 (210)
Q Consensus       148 ~~~~~~----~~~~~~~Sa~~~~----------~i~~~~~~i~~~~  179 (210)
                      +....+    ..+++++||.++.          ++..+++.+.+.+
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            444433    2588999999865          4566776666654

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.59  E-value=3.9e-14  Score=110.16  Aligned_cols=160  Identities=20%  Similarity=0.203  Sum_probs=102.5

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCC-CCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCcc
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPT-DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   81 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~~   81 (210)
                      |-++|.|++|||||++.++..+-.- .|.-|+ ...... +.+ ...-.|++-|+||..+-    ..+-..|   +..+.
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGv-V~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV-VRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccE-EEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            4699999999999999999876432 222222 222221 222 33346889999996432    2233333   44578


Q ss_pred             EEEEEEECCChhH---HHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           82 VFVLAFSLVSRAS---YENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        82 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      +++.|+|++..+.   .++. ..+..++..+.   .+.|.+||+||+|+.....          ........+....+..
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE  308 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence            9999999985542   3333 56666777665   4899999999999654432          2222333333333432


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ..+++||.++.|++++...+.+.+....
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            2233999999999999999988776653

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.59  E-value=2.3e-14  Score=120.84  Aligned_cols=118  Identities=13%  Similarity=0.076  Sum_probs=79.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc--CCCCCC--------CCCc----------eeeeeeE-EEEECCEEEEEEEEeCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD--------YIPT----------VFDNFSA-NVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~--~~~~~~--------~~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~   64 (210)
                      .+..+|+|+|.+++|||||.++|..  +.....        ...+          .+.++.. ...+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3556999999999999999999973  211100        0000          0111111 12233345788999999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |+.+|.......++.+|++|+|+|+++.-...  ...+......  .++|+++++||+|+...
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~--t~~l~~~~~~--~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ--TRKLMEVCRL--RDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH--HHHHHHHHHh--cCCCEEEEEECCccccc
Confidence            99999876677889999999999998753222  2344444333  47999999999998653

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.59  E-value=1.4e-14  Score=109.47  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC--CCCCCC-Cce-----------eeee---eEEEEE--------CCEEEEEEEEeCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK--FPTDYI-PTV-----------FDNF---SANVVA--------EGTTVNLGLWDTA   64 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~--~~~~~~-~~~-----------~~~~---~~~~~~--------~~~~~~~~i~D~~   64 (210)
                      +|+++|..++|||||+.+|....  ...... .+.           +.+.   ......        +++.+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998432  111000 000           0000   001112        2447899999999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      |+.+|.......++.+|++++|+|+++..+.+..  ..+.....  .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence            9999998888899999999999999987655542  22223222  358999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.58  E-value=9.2e-15  Score=120.22  Aligned_cols=153  Identities=17%  Similarity=0.111  Sum_probs=91.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC--CCCC-------------CCC-------------Cc---eeeeeeE-EEEECCEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN--KFPT-------------DYI-------------PT---VFDNFSA-NVVAEGTTV   56 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~--~~~~-------------~~~-------------~~---~~~~~~~-~~~~~~~~~   56 (210)
                      +||+++|..++|||||+++|+..  ....             ...             +.   .+.+... .........
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999732  1111             000             00   0000100 011222345


Q ss_pred             EEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCC
Q 028362           57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG  136 (210)
Q Consensus        57 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~  136 (210)
                      .+.+||+||+++|.......+..+|++++|+|+.....-+.  ......+.... ..++++++||+|+.....      .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt--~~~~~~~~~~~-~~~iivviNK~D~~~~~~------~  151 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT--RRHSYIASLLG-IRHVVLAVNKMDLVDYDE------E  151 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc--HHHHHHHHHcC-CCcEEEEEEecccccchH------H
Confidence            78899999999986655567889999999999976533221  12222222221 346889999999964321      0


Q ss_pred             CCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362          137 LVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  170 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  170 (210)
                      ......++...+....+.  .+++++||++|.|+++
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            000122333444444443  3789999999999986

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.58  E-value=8.8e-15  Score=122.23  Aligned_cols=158  Identities=13%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCC--CCC-------------CCC--C--------c------eeeeeeEE-EEEC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPT-------------DYI--P--------T------VFDNFSAN-VVAE   52 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~-------------~~~--~--------~------~~~~~~~~-~~~~   52 (210)
                      .+..++|+++|..++|||||+++|+...  ...             ...  +        .      .+.+.... ....
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            4677999999999999999999998431  111             000  0        0      00111111 1122


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                      .....+.+||+||++.|.......+..+|++++|+|+.....-..  ......+.... ..|+++++||+|+.....   
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt--~~~~~l~~~lg-~~~iIvvvNKiD~~~~~~---  177 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT--RRHSFIATLLG-IKHLVVAVNKMDLVDYSE---  177 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc--hHHHHHHHHhC-CCceEEEEEeeccccchh---
Confidence            344678899999998886544445789999999999976532211  11111222211 247899999999964321   


Q ss_pred             CCCCCCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHH
Q 028362          133 DHPGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  171 (210)
                         .......++...+....+   ..+++++||++|.|++++
T Consensus       178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence               000011223333333333   357899999999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.58  E-value=2.3e-14  Score=118.89  Aligned_cols=159  Identities=16%  Similarity=0.104  Sum_probs=100.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC------------------------CCCCc---eeeeeeEE-EEECCE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT------------------------DYIPT---VFDNFSAN-VVAEGT   54 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~------------------------~~~~~---~~~~~~~~-~~~~~~   54 (210)
                      .+.+++|+++|..++|||||+.+|+..  ....                        ...+.   .+.+.... ......
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            567899999999999999999988741  1110                        00000   01111111 123345


Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHH------HHHHHHHHHHhccCCCC-cEEEEeeCcccccc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE------NVLKKWIPELQHYSPGV-PVVLVGTKLDLRED  127 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~  127 (210)
                      .+.++++|+||+++|.......+..+|++|+|+|+++. .++      ......+..+..  .++ ++++++||+|+...
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCch
Confidence            57889999999999988888889999999999999873 121      111222222222  356 46888999998621


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                      ..   . ........+++..+..+.+.    .+++++||.+|+|+.+
T Consensus       161 ~~---~-~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KY---S-KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hh---h-HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            10   0 00001235667777777662    4799999999999854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=6e-14  Score=114.97  Aligned_cols=157  Identities=17%  Similarity=0.227  Sum_probs=107.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEEC-CEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      .+..=|+++|.-..|||||+..+-..........-+...+ -+.+..+ +..-.++++|||||+.|..+...-..-+|.+
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            3556789999999999999999987665443222222222 1122222 1234678899999999999999888999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--------CCc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--------GAS  155 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  155 (210)
                      ++|++++|.-.-+..  +-++.+..  .+.|++++.||+|..+.+.             +....-.+++        +..
T Consensus        83 ILVVa~dDGv~pQTi--EAI~hak~--a~vP~iVAiNKiDk~~~np-------------~~v~~el~~~gl~~E~~gg~v  145 (509)
T COG0532          83 ILVVAADDGVMPQTI--EAINHAKA--AGVPIVVAINKIDKPEANP-------------DKVKQELQEYGLVPEEWGGDV  145 (509)
T ss_pred             EEEEEccCCcchhHH--HHHHHHHH--CCCCEEEEEecccCCCCCH-------------HHHHHHHHHcCCCHhhcCCce
Confidence            999999876433332  11122222  5899999999999985531             1111111222        235


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .++++||++|+|+++++..+.-..
T Consensus       146 ~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         146 IFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHH
Confidence            789999999999999998876544

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=4.4e-14  Score=109.40  Aligned_cols=159  Identities=18%  Similarity=0.188  Sum_probs=104.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eeeeeEEEEECCEEEEEEEEeCCCccc--cc-------ccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FDNFSANVVAEGTTVNLGLWDTAGQED--YN-------RLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~-------~~~~~   75 (210)
                      ....|+|.|.||||||||++.+...+..-...|.+  .....+   ++.....++++||||.=+  ..       +-...
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGh---fe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGH---FERGYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEee---eecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            45789999999999999999999876443323322  222221   233446889999999411  11       11111


Q ss_pred             cccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .-+-+++++|++|.+...  +++.. ..++..+..... .|+++|.||.|.....            ..+++......-+
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~  309 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEG  309 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhc
Confidence            122367899999997654  45555 566666666554 8999999999997653            2333343344444


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ......+++..+.+++.+-..+.....+.
T Consensus       310 ~~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         310 GEEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             cccccceeeeehhhHHHHHHHHHHHhhch
Confidence            44456788889999998888887775554

>PLN03127 Elongation factor Tu; Provisional

Probab=99.57  E-value=7.2e-14  Score=115.82  Aligned_cols=165  Identities=20%  Similarity=0.158  Sum_probs=98.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC------CC-------C---CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN------KF-------P---TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      ..+..++|+++|..++|||||+++|...      ..       +   ++..+....+. ....+......+.++|+||+.
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT-AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee-eEEEEcCCCeEEEEEECCCcc
Confidence            4567899999999999999999999621      10       0   00001111111 112233344677889999998


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  146 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      +|.......+..+|++++|+|+.+...-+.  ...+..+..  .++| ++++.||+|+.+...       ......++..
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~--~gip~iIvviNKiDlv~~~~-------~~~~i~~~i~  204 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVVFLNKVDVVDDEE-------LLELVEMELR  204 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEeeccCCHHH-------HHHHHHHHHH
Confidence            876544445667999999999976532221  333334433  3578 578899999964321       0001122333


Q ss_pred             HHHHHcC----CcEEEEeccC---CCCC-------HHHHHHHHHHHHh
Q 028362          147 ELRKQIG----ASYYIECSSK---TQQN-------VKAVFDAAIKVVI  180 (210)
Q Consensus       147 ~~~~~~~----~~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~  180 (210)
                      ++...++    ..|++++|+.   ++.|       +.++++.+.+.+.
T Consensus       205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            4444332    2478888876   4544       6777777776654

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.57  E-value=4.4e-14  Score=109.03  Aligned_cols=166  Identities=17%  Similarity=0.243  Sum_probs=118.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE---EEEECCEEEEEEEEeCCCcccccccCcccccCc----c
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA---NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA----D   81 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----~   81 (210)
                      =+|+++|+.++||||||.+|.+..-   ..+-.+..|.+   ....++....+.+|-+.|+-....+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            4799999999999999999987652   22222333322   222344556788899999876666655554432    4


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCC--------------------------------------------------
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSP--------------------------------------------------  111 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------------------------------------------------  111 (210)
                      .+|++.|+++|+.+.+..+.|...+..+..                                                  
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            889999999997776666777654443310                                                  


Q ss_pred             ------------CCcEEEEeeCccc----ccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362          112 ------------GVPVVLVGTKLDL----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       112 ------------~~piilv~nK~D~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                                  .+|+++|.+|+|.    ..+.++.+.|.+   .....+.+||.++|. ..|.+|+++..||+-++..|
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfd---fiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYi  285 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFD---FIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYI  285 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHH---HHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHH
Confidence                        1589999999998    444333333332   567889999999998 77889999999999999999


Q ss_pred             HHHHhC
Q 028362          176 IKVVIK  181 (210)
Q Consensus       176 ~~~~~~  181 (210)
                      ++..+-
T Consensus       286 vhr~yG  291 (473)
T KOG3905|consen  286 VHRSYG  291 (473)
T ss_pred             HHHhcC
Confidence            998764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.57  E-value=5e-14  Score=96.17  Aligned_cols=104  Identities=20%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc----------cccCcccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRLRPLSY   77 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~   77 (210)
                      ||+|+|.+|+|||||+|+|.+...  .....+++..........++..+  .++|+||...-          ..... .+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~-~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLE-QI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHH-HH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHH-HH
Confidence            699999999999999999997532  12222222222223445566554  58999996432          11222 34


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK  121 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  121 (210)
                      ..+|++++|+|.+++..  .....+++.++   .+.|+++|+||
T Consensus        78 ~~~d~ii~vv~~~~~~~--~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT--EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH--HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC--HHHHHHHHHHh---cCCCEEEEEcC
Confidence            78999999999877422  21244555553   57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK09866 hypothetical protein; Provisional

Probab=99.56  E-value=1e-13  Score=116.53  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             EEEEEEeCCCcccc-----cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           56 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        56 ~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      ..+.++||||-..-     .......+..+|+++||+|.....+..+  ..+...+.......|+++|+||+|+.+... 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dree-  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNS-  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence            45678999996431     1123346889999999999987544433  234455544333469999999999854321 


Q ss_pred             ccCCCCCCccCHHHHHHHHHH------cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          131 LADHPGLVPVTTAQGEELRKQ------IGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                               ...+....+...      .....++++||+.|.|++++++.+.+
T Consensus       307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                     123344444321      12346899999999999999988876

>PLN03126 Elongation factor Tu; Provisional

Probab=99.56  E-value=2.3e-14  Score=119.40  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=96.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC------CCCCC--------CCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK------FPTDY--------IPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~------~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ..+..++|+++|..++|||||+++|....      ....+        ....+.+... ...+......+.++|+||+++
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            35678999999999999999999999521      10100        0001111111 111223345778999999999


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++++|+|+.+...-+.  ..++..+..  .++| +++++||+|+.+...       ......+++..
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~  225 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQ--VGVPNMVVFLNKQDQVDDEE-------LLELVELEVRE  225 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCeEEEEEecccccCHHH-------HHHHHHHHHHH
Confidence            87666667788999999999986543322  344444433  2577 778999999965321       00022335555


Q ss_pred             HHHHcC----CcEEEEeccCCCCC
Q 028362          148 LRKQIG----ASYYIECSSKTQQN  167 (210)
Q Consensus       148 ~~~~~~----~~~~~~~Sa~~~~~  167 (210)
                      +....+    ..+++++|+.++.+
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHhcCCCcCcceEEEEEcccccc
Confidence            555542    34899999988743

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.56  E-value=1.8e-14  Score=124.71  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=94.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCCce-------------------eeeeeE-EEEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTV-------------------FDNFSA-NVVA   51 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~----------~~~~~-------------------~~~~~~-~~~~   51 (210)
                      ..+..++|+++|.+++|||||+++|+...  ....          ...++                   +.+... ....
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            44577999999999999999999999532  2100          00000                   000000 0112


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  131 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~  131 (210)
                      ......+.++|+||+++|.......+..+|++++|+|+.....-+.  ......+... ...|+++++||+|+.....  
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t--~e~~~~~~~~-~~~~iivvvNK~D~~~~~~--  174 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT--RRHSFIASLL-GIRHVVLAVNKMDLVDYDQ--  174 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC--HHHHHHHHHh-CCCeEEEEEEecccccchh--
Confidence            2233567889999998876544556789999999999976532221  1112222222 2357889999999964211  


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362          132 ADHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  170 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  170 (210)
                          ........+...+...++.  .+++++||++|.|+++
T Consensus       175 ----~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 ----EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                0000112333444445443  3689999999999974

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.56  E-value=3.9e-14  Score=110.27  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHc--CCCCC-----------CCCC---ceeeee---eEEEEECCEEEEEEEEeCCCccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS--NKFPT-----------DYIP---TVFDNF---SANVVAEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~--~~~~~-----------~~~~---~~~~~~---~~~~~~~~~~~~~~i~D~~G~~~~~   70 (210)
                      +|+++|.+++|||||+++|..  +....           .+.+   ..+.+.   ...+..  ..+.+.+|||||+.+|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW--KDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE--CCEEEEEEECCCcHHHH
Confidence            589999999999999999973  21110           0000   001111   111222  34678889999999888


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ..+...++.+|++++|+|..+...-..  ..+...+..  .++|+++++||+|+...
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a  131 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            888889999999999999987543222  233333333  36899999999999753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.56  E-value=1.5e-14  Score=109.46  Aligned_cols=174  Identities=16%  Similarity=0.134  Sum_probs=111.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCce-eeeeeEEEEECCEEEEEEEEeCCCccc-------ccccCcc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTV-FDNFSANVVAEGTTVNLGLWDTAGQED-------YNRLRPL   75 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~   75 (210)
                      ...+++|++.|..|+|||+|||+|+.+...+-. .+.. .........+++  -.+++||+||-++       +++....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            457799999999999999999999976543321 1111 111011122333  4678899999655       5666777


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc---cccc--CCCCCCccCHHHH---HH
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLA--DHPGLVPVTTAQG---EE  147 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~---~~~~--~~~~~~~~~~~~~---~~  147 (210)
                      ++...|.++++.+..|+.--.+. ..|.+.+.. .-+.|++++.|..|....-   +...  +.+.+.......+   .+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            88899999999999988644332 444444443 2358999999999976542   1000  1111111222222   22


Q ss_pred             HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          148 LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       148 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ++++  ..|.+.++...+.|++++...++..+.....
T Consensus       192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HHhh--cCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            2332  4577888889999999999999998865443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.55  E-value=5.7e-14  Score=116.56  Aligned_cols=158  Identities=15%  Similarity=0.089  Sum_probs=97.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC------------------------CCCCc---eeeeeeE-EEEECCE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT------------------------DYIPT---VFDNFSA-NVVAEGT   54 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~------------------------~~~~~---~~~~~~~-~~~~~~~   54 (210)
                      .+..++|+++|..++|||||+.+|+.  +....                        ...+.   .+.+... .......
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            46789999999999999999999985  21110                        00000   0111111 1123445


Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---H--HHHHHHHHHHHhccCCCCc-EEEEeeCccccc--
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y--ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE--  126 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~--  126 (210)
                      ...+.++|+||+.+|.......+..+|++++|+|++....   +  .....+.+..+..  -++| ++++.||+|...  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence            5788899999999998777777889999999999986521   0  0111222223322  2566 678999999532  


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                      ...      .......+++..+....+.    .+++++|+.+|+|+.+
T Consensus       162 ~~~------~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQ------ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhH------HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            110      0001233455555554443    5899999999999964

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.55  E-value=6.1e-14  Score=109.49  Aligned_cols=114  Identities=22%  Similarity=0.231  Sum_probs=75.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCC-----Cce-----------eeeee-EEEEECCEEEEEEEEeCCCccccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI-----PTV-----------FDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRL   72 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~-----~~~-----------~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~   72 (210)
                      +|+++|.+|+|||||++++....-.....     .+.           ..... .........+.+.+||+||+.+|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            58999999999999999997532110000     000           00000 00112223467889999999888777


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +...+..+|++++|+|.++....... ..| ..+..  .++|.++++||+|....
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence            78889999999999999876554332 223 23332  36899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.53  E-value=8.7e-14  Score=115.29  Aligned_cols=168  Identities=14%  Similarity=0.154  Sum_probs=103.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeeeE----------------EEEE----------C
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA----------------NVVA----------E   52 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~----------------~~~~----------~   52 (210)
                      +.+..++|.++|.-..|||||+.+|.+-.   +.++...  |...-|..                ....          .
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            44678999999999999999999999532   1111100  00000000                0000          0


Q ss_pred             C----EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           53 G----TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        53 ~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .    ....+.++|+||++.|-......+..+|++++|+|+..+ ...+.  .+.+..+... .-.|+++++||+|+.+.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~l-gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIM-KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHc-CCCcEEEEEecccccCH
Confidence            0    023678999999999876666667889999999999864 22221  2222233222 23468899999999643


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ..        .....+++..+....  ...+++++||++|.|++++++.|.+.+..+
T Consensus       187 ~~--------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        187 AQ--------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HH--------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            21        001123333333221  235899999999999999999998766443

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.52  E-value=3.9e-14  Score=107.01  Aligned_cols=174  Identities=18%  Similarity=0.162  Sum_probs=103.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce------------eeeeeEEEEE---------------------
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV------------FDNFSANVVA---------------------   51 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~------------~~~~~~~~~~---------------------   51 (210)
                      .++..-|+++|..|+|||||++||..........|-.            +.++..+.++                     
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            3467789999999999999999999654332221111            0000000000                     


Q ss_pred             ----------------CCEEEEEEEEeCCCccc-ccc-----cCccccc--CccEEEEEEECC---ChhHHHHHHHHHHH
Q 028362           52 ----------------EGTTVNLGLWDTAGQED-YNR-----LRPLSYR--GADVFVLAFSLV---SRASYENVLKKWIP  104 (210)
Q Consensus        52 ----------------~~~~~~~~i~D~~G~~~-~~~-----~~~~~~~--~~~~~i~v~d~~---~~~s~~~~~~~~~~  104 (210)
                                      ........++|||||.+ |.+     ++...+.  ...++++|+|..   ++..|-...-.-..
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                            11345678999999954 432     1111222  244777888874   34444432112223


Q ss_pred             HHhccCCCCcEEEEeeCcccccccc-------------ccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362          105 ELQHYSPGVPVVLVGTKLDLREDKH-------------YLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK  169 (210)
Q Consensus       105 ~~~~~~~~~piilv~nK~D~~~~~~-------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  169 (210)
                      ++..  ...|.|+++||+|+.+..-             ...  ....+..+.......+-..|.....+.+|+.+|.|.+
T Consensus       176 ilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  176 ILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHH
Confidence            3332  5799999999999977632             111  1223333444444445555555567899999999999


Q ss_pred             HHHHHHHHHHh
Q 028362          170 AVFDAAIKVVI  180 (210)
Q Consensus       170 ~~~~~i~~~~~  180 (210)
                      ++|..+-+.+-
T Consensus       254 df~~av~~~vd  264 (366)
T KOG1532|consen  254 DFFTAVDESVD  264 (366)
T ss_pred             HHHHHHHHHHH
Confidence            99999877664

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.50  E-value=5.5e-13  Score=108.86  Aligned_cols=82  Identities=22%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ce-eeeeeEEE--------------------EEC-CEEEEEEEEeCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TV-FDNFSANV--------------------VAE-GTTVNLGLWDTAG   65 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~-~~~~~~~~--------------------~~~-~~~~~~~i~D~~G   65 (210)
                      ++|+|+|.|+||||||+|+|.+........| ++ ........                    ..+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998765432222 11 11111100                    011 2346789999999


Q ss_pred             c----ccccccCccc---ccCccEEEEEEECC
Q 028362           66 Q----EDYNRLRPLS---YRGADVFVLAFSLV   90 (210)
Q Consensus        66 ~----~~~~~~~~~~---~~~~~~~i~v~d~~   90 (210)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3334444445   88999999999996

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.50  E-value=5.6e-14  Score=93.80  Aligned_cols=137  Identities=23%  Similarity=0.201  Sum_probs=98.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----ccccCcccccCccEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYRGADVFVL   85 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~~~i~   85 (210)
                      |++++|..|+|||||.+.+-++..-  +..|....|      +++    -.+|+||.--    +.+-......+++++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve~------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVEF------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceeec------cCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7899999999999999999877532  222222222      111    1379998432    22222335678999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |-.++++++....      .+.... ..|+|-|.+|.|+...            ...+....|..+-|..++|++|+.++
T Consensus        71 v~~and~~s~f~p------~f~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFPP------GFLDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCCc------cccccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            9999999765443      222222 4568989999999864            35677788888899999999999999


Q ss_pred             CCHHHHHHHHHH
Q 028362          166 QNVKAVFDAAIK  177 (210)
Q Consensus       166 ~~i~~~~~~i~~  177 (210)
                      .|+++++..+..
T Consensus       132 ~gv~~l~~~L~~  143 (148)
T COG4917         132 QGVEELVDYLAS  143 (148)
T ss_pred             ccHHHHHHHHHh
Confidence            999999987754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.4e-13  Score=100.35  Aligned_cols=165  Identities=16%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccccc---CccEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADVFVL   85 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i~   85 (210)
                      -.|+++|+.++|||+|+.+|..+.+.....+..+.  ...+.+.+..  .+++|.||+++.+.-...+++   .+-+++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            57999999999999999999988654432222211  2223333333  788999999998765555555   7889999


Q ss_pred             EEECC-ChhHHHHHHHHHHHHHhcc---CCCCcEEEEeeCccccccccc------c------------------cCCCCC
Q 028362           86 AFSLV-SRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHY------L------------------ADHPGL  137 (210)
Q Consensus        86 v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~------~------------------~~~~~~  137 (210)
                      |+|.. ......++.+.++..+...   ...+|++|.-||.|+.-....      .                  +.....
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            99975 3445555556666666655   257899999999998655320      0                  000000


Q ss_pred             CccCHHHHH--HHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          138 VPVTTAQGE--ELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       138 ~~~~~~~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      .......+.  +|++-. ....|.+.|++++ +++++-+|+.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            000011111  122211 1236788999988 899999998765

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.49  E-value=5.7e-13  Score=116.41  Aligned_cols=118  Identities=16%  Similarity=0.072  Sum_probs=80.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC--CCCC--c----------eeeee---eEEEEECCEEEEEEEEeCC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT--DYIP--T----------VFDNF---SANVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~--~~~~--~----------~~~~~---~~~~~~~~~~~~~~i~D~~   64 (210)
                      ...+..+|+|+|.+++|||||+++|...  ....  ...+  +          .+.+.   ...+..+  ++.+.+||||
T Consensus         6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTP   83 (689)
T TIGR00484         6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTP   83 (689)
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECC
Confidence            3345679999999999999999999732  1100  0000  0          01111   1122233  4678899999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |+.+|...+...++.+|++++|+|+++....+..  .++..+..  .++|+++++||+|+...
T Consensus        84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANR--YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            9998887788889999999999999876554432  33333333  36899999999999754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.48  E-value=1.9e-12  Score=96.45  Aligned_cols=163  Identities=20%  Similarity=0.196  Sum_probs=95.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CceeeeeeEEEEECCEEEEEEEEeCCCcccccc-----------cCc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----------LRP   74 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   74 (210)
                      ++|+|+|.+|||||||+|.+.+........   +.+...........+  ..+.++||||-.+...           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            589999999999999999999875322211   111111122233344  4678899999654321           111


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      ....+++++++|+++.+ .+-.+  ...++.+....   .-.++++|+|+.|...... ...   .........+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~-~~~---~~~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT-LED---YLENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCc-HHH---HHHhccHHHHHHHHH
Confidence            23467899999999876 22221  23344444332   1358889999999765421 000   000012445555566


Q ss_pred             cCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 028362          152 IGASYYIECS-----SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+. .++..+     +..+.+++++++.+-+.+..
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            554 333322     45677899999988888775

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.47  E-value=1.4e-12  Score=108.03  Aligned_cols=173  Identities=18%  Similarity=0.232  Sum_probs=117.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE---CCEEEEEEEEeCCCcccccccCcccccCc---
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGA---   80 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~---   80 (210)
                      ..=.|+|+|..++|||||+.+|.+..   .+.++.+..|.+-...   .+....+.+|.+.|...+..+....+...   
T Consensus        24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~  100 (472)
T PF05783_consen   24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP  100 (472)
T ss_pred             CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence            34589999999999999999987543   3345666666442221   12335789999999877777766655532   


Q ss_pred             -cEEEEEEECCChhHHHHHHHHHHHHHhccCC------------------------------------------------
Q 028362           81 -DVFVLAFSLVSRASYENVLKKWIPELQHYSP------------------------------------------------  111 (210)
Q Consensus        81 -~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------------------------------------------------  111 (210)
                       -++|+|.|++.|+.+.+....|+..++.+..                                                
T Consensus       101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~  180 (472)
T PF05783_consen  101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE  180 (472)
T ss_pred             ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence             3889999999987665443444322221100                                                


Q ss_pred             ---------------CCcEEEEeeCcccccccccc-cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362          112 ---------------GVPVVLVGTKLDLREDKHYL-ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       112 ---------------~~piilv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                                     .+|++||.+|+|....-... .-+........+.+..+|..||+ ..+.||++...|++-++..|
T Consensus       181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHH
Confidence                           25999999999974321000 00111222567788999999998 67789999999999999999


Q ss_pred             HHHHhCCc
Q 028362          176 IKVVIKPP  183 (210)
Q Consensus       176 ~~~~~~~~  183 (210)
                      .+.+....
T Consensus       260 ~h~l~~~~  267 (472)
T PF05783_consen  260 LHRLYGFP  267 (472)
T ss_pred             HHHhccCC
Confidence            98887643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00503 prfC peptide chain release factor 3

Probab=99.47  E-value=4.5e-13  Score=113.09  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=79.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc--CCCCC------CC--CCc----------eeeeeeE-EEEECCEEEEEEEEeCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS--NKFPT------DY--IPT----------VFDNFSA-NVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~--~~~~~------~~--~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~   64 (210)
                      .+..+|+|+|.+++|||||+++|+.  +....      ..  ..+          .+.++.. ...++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999863  22110      00  000          0112211 12344456888999999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      |+.+|.......++.+|++|+|+|.++.-  ......+......  .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv--~~~t~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV--ETRTRKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence            99988776666789999999999998742  2222344444433  4689999999999864

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.46  E-value=2.3e-12  Score=102.06  Aligned_cols=129  Identities=18%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHH----------HHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY----------ENVLKKWIPELQHYS-PGVPVVLVGTKL  122 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~piilv~nK~  122 (210)
                      +...+.++|++||...+.-|.+++.+++++|||+++++....          .+...-+-.+++... .+.++||.+||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            337788999999999999999999999999999999865322          111111222333322 589999999999


Q ss_pred             ccccccccccC-----CCCCCccCHHHHHHHHHH-----cC----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          123 DLREDKHYLAD-----HPGLVPVTTAQGEELRKQ-----IG----ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       123 D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+..+.-..-+     +........+++..+.+.     +.    -.....+.|.+..+|+.+|..+.+.+...
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            98766331110     111111233344333332     11    12344589999999999999999988765

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=5.9e-13  Score=107.89  Aligned_cols=169  Identities=20%  Similarity=0.171  Sum_probs=104.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-ccC--------c
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RLR--------P   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~--------~   74 (210)
                      +..++|+|+|.||||||||+|.|.+...  -.....|+.+-....+.++|  +.+.+.||+|-.+-. ...        .
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            3558999999999999999999998653  23334455555555666677  566779999976521 111        1


Q ss_pred             ccccCccEEEEEEEC--CChhHHHHHHHHHHHHHhccC-------CCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           75 LSYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      ..+..+|++++|+|+  ++-++-..+ ...++......       ...|++++.||.|+...-.    +....++.....
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~----~~~~~~~~~~~~  418 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP----EMTKIPVVYPSA  418 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCccc----cccCCceecccc
Confidence            236679999999999  333333332 23333332221       2379999999999976511    000000111111


Q ss_pred             HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          146 EELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       146 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                        .. .-......++|+++++|++.+.+.+.+.+.....
T Consensus       419 --~~-~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  419 --EG-RSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             --cc-CcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence              00 0112244569999999999999999887765443

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.7e-12  Score=106.42  Aligned_cols=153  Identities=18%  Similarity=0.248  Sum_probs=106.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      +++.-|.|+|.-..|||||+..|-..........-+.   --|..+.. .|  -.+++.||||+..|..|...-..-.|+
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence            4667789999999999999999886544322111111   11233333 44  667889999999999999988999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-------Hc-C
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-------QI-G  153 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~  153 (210)
                      +++|+.+.|.-.-+..  +   .+... ..+.|+|+..||+|.+...             .+...+-..       .+ |
T Consensus       228 vVLVVAadDGVmpQT~--E---aIkhAk~A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GG  289 (683)
T KOG1145|consen  228 VVLVVAADDGVMPQTL--E---AIKHAKSANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGG  289 (683)
T ss_pred             EEEEEEccCCccHhHH--H---HHHHHHhcCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCC
Confidence            9999999886433332  1   22222 2689999999999987653             222222111       12 3


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ..+.+++||++|+|++.+-+.+.-..
T Consensus       290 dVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  290 DVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             ceeEEEeecccCCChHHHHHHHHHHH
Confidence            46889999999999999988876543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.45  E-value=2e-12  Score=115.49  Aligned_cols=154  Identities=20%  Similarity=0.216  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECC-E----------E-----EEEEEEeCCCcccccccCcccccCcc
Q 028362           19 VGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEG-T----------T-----VNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus        19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~-~----------~-----~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      ++||||+.++-+-........-+...+.. .+..+. +          .     -.+.+|||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            35999999999765533222222111111 111110 0          0     12788999999999887777788899


Q ss_pred             EEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc------CHHHHH----H-
Q 028362           82 VFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV------TTAQGE----E-  147 (210)
Q Consensus        82 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~----~-  147 (210)
                      ++++|+|+++   +.+++.+     ..+..  .++|+++|+||+|+..........+....+      ..++..    + 
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI-----NILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH-----HHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999987   4444332     23332  368999999999996532210000000000      011110    0 


Q ss_pred             ---HH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          148 ---LR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       148 ---~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                         +.             ...+..+++++||++|+||++++.++....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence               11             112345899999999999999998876543

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.45  E-value=3.8e-12  Score=105.06  Aligned_cols=165  Identities=22%  Similarity=0.308  Sum_probs=123.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ..+..+++.++|+.++|||.+++.+.++.+...+..+....+..+ +.+.++...+.+-|.+.. ...-+...- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            445778999999999999999999999988876666665555443 445577777888888765 322222222 67999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +.++||.+++.++... ....+..... ...|+++|++|.|+....+       .  ...+. .+++.++++.+-+.+|.
T Consensus       499 ~~~~YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q-------~--~~iqp-de~~~~~~i~~P~~~S~  566 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQ-------R--YSIQP-DEFCRQLGLPPPIHISS  566 (625)
T ss_pred             EEEecccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhh-------c--cCCCh-HHHHHhcCCCCCeeecc
Confidence            9999999999999876 3443333332 6899999999999987653       1  11222 78899999887788888


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +.... .++|..|+.++..+.
T Consensus       567 ~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCCC-chHHHHHHHhhhCCC
Confidence            86444 899999999998876

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.45  E-value=5.2e-13  Score=104.22  Aligned_cols=158  Identities=17%  Similarity=0.114  Sum_probs=106.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCC--CC----------CCCCce-------------------eeeeeEEEEE-
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKF--PT----------DYIPTV-------------------FDNFSANVVA-   51 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~--~~----------~~~~~~-------------------~~~~~~~~~~-   51 (210)
                      ..+..+|++-+|.-.-||||||-||+...-  .+          ....+.                   +.++..-+.+ 
T Consensus         2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF   81 (431)
T COG2895           2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF   81 (431)
T ss_pred             CcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec
Confidence            456789999999999999999999995321  00          000111                   1111111111 


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  131 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~  131 (210)
                      .-...+|.+-||||+++|.+..-.-...||+.|+++|+  +..+.+. .+....+...-.-..+++..||+||.+..+..
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~Q-TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQ-TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHH-hHHHHHHHHHhCCcEEEEEEeeecccccCHHH
Confidence            22335788999999999988777788889999999998  4555554 33344444433345788899999998876422


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 028362          132 ADHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA  170 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  170 (210)
                      ..      ....+-..|+.+++.  ..++++||..|+|+-.
T Consensus       159 F~------~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         159 FE------AIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HH------HHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            21      355667788888875  3688999999998743

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=8.7e-13  Score=105.15  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=99.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHc--CCCCC---------------C---------CCCce---eeeeeEE-EEECC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT---------------D---------YIPTV---FDNFSAN-VVAEG   53 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~--~~~~~---------------~---------~~~~~---~~~~~~~-~~~~~   53 (210)
                      +.+..++++++|+..+|||||+-+|+-  +.++.               .         ...+.   +.++... ..+..
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            457889999999999999999999983  22221               0         00000   1111111 12234


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH-----HHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-----YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-----~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ..+.|+++|+||+.+|-.....-+..||+.|+|+|+.+.+.     ......+-+ .+...-.-..+|++.||+|+.+.+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCceEEEEEEcccccccC
Confidence            55789999999999998777778889999999999987731     111111111 122111234678888999998743


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          129 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                      +..      ......+...+.+..+.    .+|+++|+..|+|+.+
T Consensus       162 e~r------f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 EER------FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHH------HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            200      11233344445544443    3699999999999865

>PRK12739 elongation factor G; Reviewed

Probab=99.43  E-value=4.6e-12  Score=110.75  Aligned_cols=116  Identities=17%  Similarity=0.102  Sum_probs=78.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCC------CC-----CCC---ceeeee---eEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFP------TD-----YIP---TVFDNF---SANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~------~~-----~~~---~~~~~~---~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      .+..+|+|+|..++|||||+++|+..  ...      ..     +.+   ..+.+.   ...+..+  +..+.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence            46678999999999999999999742  110      00     000   001111   1122233  467888999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .+|...+...++.+|++++|+|+.+....+.  ...+..+..  .++|+++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt--~~i~~~~~~--~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS--ETVWRQADK--YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            8887778888999999999999987644332  233333333  36899999999998753

>PRK13768 GTPase; Provisional

Probab=99.42  E-value=1e-12  Score=101.54  Aligned_cols=124  Identities=17%  Similarity=0.115  Sum_probs=71.4

Q ss_pred             EEEEEeCCCcccc---cccCcccccC-----ccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           57 NLGLWDTAGQEDY---NRLRPLSYRG-----ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        57 ~~~i~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .+.+||+||+.+.   +..+..+++.     ++++++|+|........+. ...|+........++|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5788999998663   3343333332     7899999999654433222 12333322222247999999999999765


Q ss_pred             ccccc--CCCCC--------------CccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          128 KHYLA--DHPGL--------------VPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       128 ~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .....  .....              .......+.+..+..+ ..+++++|+++++|++++.+++.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            32000  00000              0000000111122333 237889999999999999999987764

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.41  E-value=4.9e-12  Score=86.96  Aligned_cols=113  Identities=27%  Similarity=0.353  Sum_probs=79.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +|++++|+.|+|||+|+.++....+...+. ++.+                          +......+.+.++.+++||
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998777754433 3332                          3333455677889999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +.+++.++..+   |...+... ..++|.++++||.|+.....          +..+...         .++++|++++.
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence            99999998654   55555443 36789999999999844321          3333332         34567888888


Q ss_pred             CHH
Q 028362          167 NVK  169 (210)
Q Consensus       167 ~i~  169 (210)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK12740 elongation factor G; Reviewed

Probab=99.40  E-value=1.7e-12  Score=113.29  Aligned_cols=110  Identities=20%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             ECCCCCCHHHHHHHHHcCC--CCC--C--CCCce----------eeeeeE-EEEECCEEEEEEEEeCCCcccccccCccc
Q 028362           14 VGDGAVGKTCMLICYTSNK--FPT--D--YIPTV----------FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLS   76 (210)
Q Consensus        14 lG~~~~GKStli~~l~~~~--~~~--~--~~~~~----------~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   76 (210)
                      +|..++|||||+++|....  ...  .  ...+.          +.+... .......++.+.+||+||+.+|...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            6999999999999996321  100  0  00010          011100 01112234788999999998887777788


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +..+|++++|+|.+........ ..| ..+..  .++|+++|+||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEK--YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHH--cCCCEEEEEECCCCCCC
Confidence            9999999999999887655432 223 33332  36899999999998643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.39  E-value=2.2e-12  Score=99.20  Aligned_cols=96  Identities=24%  Similarity=0.294  Sum_probs=76.5

Q ss_pred             ccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      +++..+...+++++|.+++|+|++++. ++..+ ..|+..+..  .++|+++|+||+|+.....          +..+.+
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHHH
Confidence            677888888999999999999999888 78776 788877654  5799999999999965432          333444


Q ss_pred             HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          146 EELRKQIGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       146 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      ..+. ..+. +++++||+++.|++++|+.+..
T Consensus        91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4443 4665 7899999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.39  E-value=9.8e-14  Score=106.00  Aligned_cols=121  Identities=21%  Similarity=0.165  Sum_probs=60.2

Q ss_pred             EEEEEeCCCcccccccCcccc--------cCccEEEEEEECC---ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           57 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        57 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      .+.++|||||.++...|....        ...-++++++|..   ++..+-..  .+........-+.|.|.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence            577899999988755554333        3455888899885   44444332  1222111122479999999999997


Q ss_pred             cccc--cccC--CCCC--------CccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 028362          126 EDKH--YLAD--HPGL--------VPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       126 ~~~~--~~~~--~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ....  ...-  ..+.        ..........+...++.. .++++|+.+++++++++..+-+.+
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            6210  0000  0000        000111122222223455 789999999999999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.38  E-value=1.7e-11  Score=91.34  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE--EEEeeCcccccccccccC
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi--ilv~nK~D~~~~~~~~~~  133 (210)
                      ....++++.|..--....+.   -++.+|.|+|+.+..+...   .+.       +++..  ++++||+|+.+...    
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~----  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG----  154 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence            45667888884322222221   2678999999987665321   111       23334  78899999975311    


Q ss_pred             CCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          134 HPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                            ...+...+..+. ....+++++||++|+|++++|+++.+.+.
T Consensus       155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                  223333444444 33458899999999999999999987553

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00007 elongation factor G; Reviewed

Probab=99.36  E-value=1.9e-11  Score=106.94  Aligned_cols=117  Identities=15%  Similarity=0.067  Sum_probs=77.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC----------------CCC-ceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD----------------YIP-TVFDNFSANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G   65 (210)
                      ..+..+|+|+|.+++|||||+++|..  +.....                ... .+.......+...  +..+.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            45677999999999999999999973  211100                000 0001111123333  46788899999


Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +.+|.......+..+|++++|+|.......+.  ...+..+..  .++|+++++||+|+...
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt--~~~~~~~~~--~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS--ETVWRQADK--YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            98876666667888999999999876644433  233333333  36899999999999754

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=2e-11  Score=95.28  Aligned_cols=171  Identities=16%  Similarity=0.188  Sum_probs=108.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc----CCCCCCCCCce-eee--eeE-EEE-------ECCEEEEEEEEeCCCccccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS----NKFPTDYIPTV-FDN--FSA-NVV-------AEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~----~~~~~~~~~~~-~~~--~~~-~~~-------~~~~~~~~~i~D~~G~~~~~   70 (210)
                      +..+++.++|.-.+|||||.+++..    ..|+.+..++. +.+  ... .+.       ..+....++++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            4569999999999999999999984    34554444433 111  111 111       24567889999999997654


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      +.......-.|..++|+|+.....-+.+.--++..+.    ....++|.||+|..++.+       ......+...++..
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q-------r~ski~k~~kk~~K  153 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ-------RASKIEKSAKKVRK  153 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh-------hhhHHHHHHHHHHH
Confidence            4444444556889999999866544443112222221    234577789998877643       01122233333333


Q ss_pred             Hc------CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCccchh
Q 028362          151 QI------GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQK  187 (210)
Q Consensus       151 ~~------~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~~  187 (210)
                      -+      +..|++++||.+|    ++|.++.+.+..++..+.+...
T Consensus       154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~  200 (522)
T KOG0461|consen  154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE  200 (522)
T ss_pred             HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence            22      4469999999999    7888888888888887765443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.34  E-value=2.8e-12  Score=112.47  Aligned_cols=117  Identities=19%  Similarity=0.064  Sum_probs=79.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC---------------CCCC---CCCceeeee-eEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK---------------FPTD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ....+|+++|..++|||||+++|....               +.+.   ...|..... ......++.++.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            456799999999999999999997421               1000   011221111 111234567789999999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      .+|.......++.+|++++|+|+.+....+.. ..|. ....  .++|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence            99887777889999999999999775333221 2222 2222  3578899999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.31  E-value=6.1e-11  Score=92.87  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=69.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc---ccc---
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---LSY---   77 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---~~~---   77 (210)
                      ...++|+++|.+||||||++|++.+....  ....++...........++  ..+.+|||||..+......   ..+   
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            46789999999999999999999976532  1222221111112223344  6788999999765321111   111   


Q ss_pred             ---cCccEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccc
Q 028362           78 ---RGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED  127 (210)
Q Consensus        78 ---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~  127 (210)
                         ...|+++||..++... +......++..+....   --.++++++|+.|..+.
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence               2588999996654221 1111122233333222   23578999999997643

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.30  E-value=5.4e-11  Score=91.51  Aligned_cols=121  Identities=12%  Similarity=0.107  Sum_probs=71.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc--c-c-------
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN--R-L-------   72 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~-------   72 (210)
                      ....++|+|+|.+|||||||+|++.+.....  ...+++..........++  ..+.+|||||-....  . .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            3466999999999999999999999865322  222222222222233344  567889999975441  0 0       


Q ss_pred             Cccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCccccccc
Q 028362           73 RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLREDK  128 (210)
Q Consensus        73 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~~  128 (210)
                      ...++.  ..+++++|..++... +......+++.+.... .  -.++++|.||+|.....
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            111222  467888887665432 1111123333333322 1  25799999999987554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.29  E-value=1.5e-10  Score=95.10  Aligned_cols=124  Identities=16%  Similarity=0.173  Sum_probs=82.8

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC-CCCcEEEEeeCccc
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDL  124 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~  124 (210)
                      ..+.++|++||...+.-|..++.+++++|||+++++-.          .+.+....|-..+.... .+.|++|++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            56788999999999999999999999999999997532          34444444555555444 68999999999998


Q ss_pred             ccccccccC------CCCCCc--cCHHHHHHHHHHc-----------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          125 REDKHYLAD------HPGLVP--VTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       125 ~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ....-...+      ......  ...+.+..+....           ....+..|+|.+..++..+|+.+.+.+
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            655221111      000011  2344455444432           112445699999999999999887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.28  E-value=5.1e-12  Score=93.38  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=101.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-----cccCcccccCcc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYRGAD   81 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~   81 (210)
                      .-||+++|.+|+|||++--.+..+... +...+....++...-.---.+..+.+||++||+.+     .......+++++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~   83 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ   83 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence            358999999999999988766644321 11122221222221111112367888999999854     346677899999


Q ss_pred             EEEEEEECCChhHHHHH--HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC---cE
Q 028362           82 VFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA---SY  156 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  156 (210)
                      ++++|||++..+-..+.  .+..++.+-.+.|+..+....+|.|+.....        .....+........+..   ..
T Consensus        84 vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~--------r~~if~~r~~~l~~~s~~~~~~  155 (295)
T KOG3886|consen   84 VLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA--------RELIFQRRKEDLRRLSRPLECK  155 (295)
T ss_pred             eeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch--------HHHHHHHHHHHHHHhccccccc
Confidence            99999999887643333  2455667777778889999999999976532        11222222222222211   24


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++++|.-+ +++-++...++..+...
T Consensus       156 ~f~TsiwD-etl~KAWS~iv~~lipn  180 (295)
T KOG3886|consen  156 CFPTSIWD-ETLYKAWSSIVYNLIPN  180 (295)
T ss_pred             ccccchhh-HHHHHHHHHHHHhhCCC
Confidence            56666654 44556666666555544

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.28  E-value=5.3e-11  Score=89.47  Aligned_cols=152  Identities=14%  Similarity=0.036  Sum_probs=86.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--C-----CCCC-cee-eee-----eEEEEEC-------------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--T-----DYIP-TVF-DNF-----SANVVAE-------------------   52 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~-----~~~~-~~~-~~~-----~~~~~~~-------------------   52 (210)
                      .....|+++|..|+|||||++++....-.  .     .... ... ..+     ......+                   
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            45678999999999999999999853110  0     0000 000 000     0000000                   


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                      .....+.++|+.|.-....   .+....+..+.|+|+.+......   .....     ...|.++++||+|+.+...   
T Consensus       100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~-----~~~a~iiv~NK~Dl~~~~~---  165 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL---KYPGM-----FKEADLIVINKADLAEAVG---  165 (207)
T ss_pred             cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh---hhHhH-----HhhCCEEEEEHHHccccch---
Confidence            1134677888888211111   11123455677888876543211   11111     2357799999999965321   


Q ss_pred             CCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          133 DHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                             .......+..++. ...+++++||+++.|++++++++.+.
T Consensus       166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                   1223334334433 33589999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.28  E-value=6.4e-11  Score=94.27  Aligned_cols=109  Identities=13%  Similarity=0.095  Sum_probs=67.1

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                      ..+.+.++||+|...-...   ....+|.+++|.+......++....   ..++     ..-++|+||+|+.....    
T Consensus       147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~----  211 (332)
T PRK09435        147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTA----  211 (332)
T ss_pred             cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhH----
Confidence            3477899999997632222   4667999999976545555443311   1221     22379999999875421    


Q ss_pred             CCCCCccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          134 HPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                         . .....+........      ...|++.+||+++.|++++++.+.+.+..
T Consensus       212 ---a-~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        212 ---A-RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             ---H-HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               0 01112222222211      11478899999999999999999886653

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.24  E-value=6e-11  Score=96.61  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=104.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccc----cccC-----ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY----NRLR-----PLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~-----~~~   76 (210)
                      ..-+++|+|.|+||||+|+|.+......-.+.+.+. .-+...  .+.+...++++||||.-+.    +..+     ...
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            446889999999999999998887664433222221 111111  2334578899999994221    1111     112


Q ss_pred             ccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH--HHHHHHHHc
Q 028362           77 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA--QGEELRKQI  152 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  152 (210)
                      .+-..+++|+.|++...  |.... -.+...+.-...+.|+|+|.||+|+-...+          +..+  ++.+....-
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD  313 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence            22345889999998654  44443 344555555557899999999999876654          3333  223333333


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +..+++.+|+.+.+|+-++-...++.++..
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence            445899999999999988888887776644

>cd01882 BMS1 Bms1

Probab=99.24  E-value=3.6e-10  Score=85.95  Aligned_cols=144  Identities=19%  Similarity=0.130  Sum_probs=83.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .....|+++|.+|+|||||++.+....-........+. +  .+ .......+.++|+||..  ..+. ...+.+|++++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVll  109 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLL  109 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEE
Confidence            45577999999999999999999864211111111111 1  11 12245667889999863  2222 24678999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCcccccccccccCCCCCCccCHHHHHH-HHH-HcCCcEEEEecc
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-QIGASYYIECSS  162 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa  162 (210)
                      |+|.+.......  ..++..+...  +.|. ++|+||.|+......      .. .....+.. +.. .....+++.+||
T Consensus       110 viDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~-~~~~~l~~~~~~~~~~~~ki~~iSa  178 (225)
T cd01882         110 LIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LR-KTKKRLKHRFWTEVYQGAKLFYLSG  178 (225)
T ss_pred             EEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HH-HHHHHHHHHHHHhhCCCCcEEEEee
Confidence            999976543322  3344444432  4675 459999998643210      00 01122222 222 233458899999


Q ss_pred             CCCCC
Q 028362          163 KTQQN  167 (210)
Q Consensus       163 ~~~~~  167 (210)
                      ++.-.
T Consensus       179 ~~~~~  183 (225)
T cd01882         179 IVHGR  183 (225)
T ss_pred             ccCCC
Confidence            98643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.23  E-value=5.8e-10  Score=90.48  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCE---------------EEEEEEEeCCCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDYN   70 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   70 (210)
                      ..++|.|+|.||||||||+|+|.+........|... ......+.+.+.               ...+.++|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            457999999999999999999987654332223221 111112222221               2458899999964321


Q ss_pred             ----ccCc---ccccCccEEEEEEECC
Q 028362           71 ----RLRP---LSYRGADVFVLAFSLV   90 (210)
Q Consensus        71 ----~~~~---~~~~~~~~~i~v~d~~   90 (210)
                          .+..   ..++++|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                1111   2367899999999973

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.22  E-value=9.5e-11  Score=88.37  Aligned_cols=166  Identities=19%  Similarity=0.180  Sum_probs=88.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CceeeeeeEEEEECCEEEEEEEEeCCCcccccc-------cC----c
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------LR----P   74 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~   74 (210)
                      +||+|+|.+|+||||++|.+++........   +.+.........+++  ..+.++||||-.+-..       .+    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            689999999999999999999876432221   111111122345666  4567899999432211       00    1


Q ss_pred             ccccCccEEEEEEECCChhHHHH--HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           75 LSYRGADVFVLAFSLVSRASYEN--VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ....+.+++++|+.+. +-+-.+  ..+.+...+.... -..++||+|..|...... ..+  .........+..+.+..
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~-~~~--~l~~~~~~~l~~li~~c  153 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDS-LED--YLKKESNEALQELIEKC  153 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTT-HHH--HHHHHHHHHHHHHHHHT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccccc-HHH--HHhccCchhHhHHhhhc
Confidence            1245689999999997 222211  1122233333211 246888899888765532 000  00000112355666666


Q ss_pred             CCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 028362          153 GASYYIECSSK------TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       153 ~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~  182 (210)
                      +. .++..+.+      ....+.+++..+-+.+...
T Consensus       154 ~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  154 GG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             TT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            65 55555554      2345777777777766554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.19  E-value=4.4e-11  Score=106.53  Aligned_cols=118  Identities=11%  Similarity=0.087  Sum_probs=79.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC--CCCCC---------CCc---eeeeee---EEEEE--------------C
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY---------IPT---VFDNFS---ANVVA--------------E   52 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~---------~~~---~~~~~~---~~~~~--------------~   52 (210)
                      ...+..+|+|+|..++|||||+++|+...  .....         .+.   .+.++.   ..+..              +
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            34567799999999999999999998432  11100         000   000110   01111              2


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      +.++.+.++||||+.+|.......++.+|++|+|+|+...-..... ..|... ..  .++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-LG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-HH--CCCCEEEEEECCccc
Confidence            2467889999999999988778888999999999999876544332 233333 22  368999999999987

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.19  E-value=2.1e-09  Score=80.82  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=101.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-------ccCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-------RLRPLSYR   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~   78 (210)
                      -.-||+++|.|.||||||+-.+..-.-. ..|..|+-..+...+.+++  ..+++.|+||..+-.       +......+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            3469999999999999999888754321 2233333222222334445  556779999854321       23344678


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHH----------------------------------------------------
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPEL----------------------------------------------------  106 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~----------------------------------------------------  106 (210)
                      .||.++.|.|++..+.-..+.+.=++.+                                                    
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            8999999999987654332222211111                                                    


Q ss_pred             --------------hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362          107 --------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       107 --------------~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                                    ..+..-++++-|.||+|.               ++.++...++++-+-   +.+|+...-|++.++
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll  280 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL  280 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence                          111111366777888887               788899999887553   568888899999999


Q ss_pred             HHHHHHHh
Q 028362          173 DAAIKVVI  180 (210)
Q Consensus       173 ~~i~~~~~  180 (210)
                      +.+++.+.
T Consensus       281 e~iWe~l~  288 (364)
T KOG1486|consen  281 ERIWEELN  288 (364)
T ss_pred             HHHHHHhc
Confidence            99999774

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1e-10  Score=87.20  Aligned_cols=170  Identities=14%  Similarity=0.226  Sum_probs=106.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE---EECCEEEEEEEEeCCCcccc-cc--cCcccccCccE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---VAEGTTVNLGLWDTAGQEDY-NR--LRPLSYRGADV   82 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G~~~~-~~--~~~~~~~~~~~   82 (210)
                      .+|+++|...+|||++.+..... .+++  .|.....+.+.   .+.+.-+.|.+||.|||-.+ ..  -....++.+-+
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhk-MsPn--eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA  104 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA  104 (347)
T ss_pred             ceEEEEeecccCcchhhheeeec-cCCC--ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence            56999999999999998655543 3322  12211111111   23346688999999999654 32  23345888999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhcc---CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|+|+|+.+  .+.++...+...+.+.   .+++.+-+...|.|...+....+.+.+...-..+++.......=...|+.
T Consensus       105 LifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L  182 (347)
T KOG3887|consen  105 LIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL  182 (347)
T ss_pred             EEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence            999999843  3445445665555543   37888889999999877654444433332223333333222211124555


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +|..+ ..|-|+|..+++++.....
T Consensus       183 TSIyD-HSIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  183 TSIYD-HSIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             eeecc-hHHHHHHHHHHHHHhhhch
Confidence            66554 7899999999998876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=9.4e-11  Score=96.32  Aligned_cols=162  Identities=23%  Similarity=0.363  Sum_probs=126.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      -.++|+.|+|..++|||+|+.+++.+.|... ..+.+..|...+.++++...+.+.|.+|...     ..|...+|++||
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            4679999999999999999999999998766 4455666788899999999999999998533     336667999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      ||.+.+..+++.+ ..+.-.+..+.  ..+|+++++++.-.....        ........+..++..+..+.++++++.
T Consensus       102 vf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~at  172 (749)
T KOG0705|consen  102 VFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCAT  172 (749)
T ss_pred             EEEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchh
Confidence            9999999999887 45544444332  578999998765433221        112455667777777777788999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      .|.+++..|+.+..++...
T Consensus       173 yGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  173 YGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            9999999999999887655

>PTZ00416 elongation factor 2; Provisional

Probab=99.14  E-value=2e-10  Score=102.27  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=78.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCC-ce-----------eeeee---EEEEEC--------CEEEEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIP-TV-----------FDNFS---ANVVAE--------GTTVNLG   59 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~-~~-----------~~~~~---~~~~~~--------~~~~~~~   59 (210)
                      ..+..+|+++|..++|||||+++|+..  ........ +.           +.++.   ..+...        ++++.+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345679999999999999999999852  11110000 00           00000   011111        2367789


Q ss_pred             EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      ++||||+.+|.......++.+|++|+|+|+.+.-....  +..+..+..  .++|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t--~~~~~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT--ETVLRQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH--HHHHHHHHH--cCCCEEEEEEChhhh
Confidence            99999999987777778899999999999987644333  233333333  358999999999997

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.13  E-value=1.2e-09  Score=88.56  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCC------------ceeeee-eEEEEECCEEEEEEEEeCCCcccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIP------------TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      ..-+|+|+-.-..|||||+..|+..  .|.+...-            ..+.++ .+...+..+++.+.++|||||-+|-.
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            3457999999999999999999953  34332111            112222 22333455668899999999999999


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHH-HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      ..+..+.-+|++++++|+.....-+.  ...+. .++   ...+.|+|.||+|.+..+.        .++ .++...+.-
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~---~gL~PIVVvNKiDrp~Arp--------~~V-vd~vfDLf~  149 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA---LGLKPIVVINKIDRPDARP--------DEV-VDEVFDLFV  149 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH---cCCCcEEEEeCCCCCCCCH--------HHH-HHHHHHHHH
Confidence            99999999999999999987664432  23222 222   3577788899999987753        112 233333333


Q ss_pred             H-------cCCcEEEEeccCCC----------CCHHHHHHHHHHHHhCCc
Q 028362          151 Q-------IGASYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       151 ~-------~~~~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~  183 (210)
                      .       ++. |.++.|+.+|          .++.-+|+.+++-+..+.
T Consensus       150 ~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         150 ELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             HhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            3       344 7888888865          358888988888877654

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=3.1e-10  Score=96.18  Aligned_cols=170  Identities=16%  Similarity=0.185  Sum_probs=106.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEE-E------------CCE----EEEEEEEeCCCcccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-A------------EGT----TVNLGLWDTAGQEDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~------------~~~----~~~~~i~D~~G~~~~   69 (210)
                      +..=|||+|.-.+|||-|+..+-+..........+...+..++. .            +.+    -=-+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            55678999999999999999988754433322222211111110 0            010    113567999999999


Q ss_pred             cccCcccccCccEEEEEEECCCh---hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC------CCCcc
Q 028362           70 NRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP------GLVPV  140 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~------~~~~~  140 (210)
                      ..+.......||.+|+|+|+-..   ++++.+     ..+..  .+.|+||.+||+|....+......+      .+...
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            99999899999999999999654   333332     23332  5799999999999876643111100      00000


Q ss_pred             CH--------HHHHHHHHH-c------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          141 TT--------AQGEELRKQ-I------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       141 ~~--------~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ..        ..+.+|+++ +            ....++++||.+|+||-+++.+|++......
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence            00        112222222 1            1235678999999999999999988765443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.11  E-value=4.4e-09  Score=84.50  Aligned_cols=81  Identities=22%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ce-eeeeeEEEEECCE---------------EEEEEEEeCCCccccc-
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TV-FDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN-   70 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   70 (210)
                      ++|.|+|.||||||||+|++.+........| ++ .... ....+.+.               ...+.+.|+||...-. 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~-G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV-GVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceE-EEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            7899999999999999999998663322222 22 1111 11222221               1358899999964321 


Q ss_pred             ---ccCc---ccccCccEEEEEEECC
Q 028362           71 ---RLRP---LSYRGADVFVLAFSLV   90 (210)
Q Consensus        71 ---~~~~---~~~~~~~~~i~v~d~~   90 (210)
                         .+..   ..++.+|++++|+|..
T Consensus        82 ~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         82 KGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1111   1367899999999984

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.09  E-value=7.4e-10  Score=80.35  Aligned_cols=151  Identities=13%  Similarity=0.019  Sum_probs=88.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCC----------------------CCCCceeeeeeEEE--E------------E
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPT----------------------DYIPTVFDNFSANV--V------------A   51 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~----------------------~~~~~~~~~~~~~~--~------------~   51 (210)
                      .++|-+.|++|||||+|+.++....-..                      ...+.........+  .            .
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4899999999999999999877432111                      00011111100011  0            0


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL  131 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~  131 (210)
                      ......+.+++..| .---..  .+.-..+.-|+|+|++..+....   +-...+.     ..=++|.||.|+.+.-.  
T Consensus        93 ~~~~~Dll~iEs~G-NL~~~~--sp~L~d~~~v~VidvteGe~~P~---K~gP~i~-----~aDllVInK~DLa~~v~--  159 (202)
T COG0378          93 DFPDLDLLFIESVG-NLVCPF--SPDLGDHLRVVVIDVTEGEDIPR---KGGPGIF-----KADLLVINKTDLAPYVG--  159 (202)
T ss_pred             cCCcCCEEEEecCc-ceeccc--CcchhhceEEEEEECCCCCCCcc---cCCCcee-----EeeEEEEehHHhHHHhC--
Confidence            01114566777777 111111  11112338889999987654321   1011111     12278899999988755  


Q ss_pred             cCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          132 ADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                              .+.+...+-+++. +..+++.+|+++|+|+++++.|+....
T Consensus       160 --------~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         160 --------ADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             --------ccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence                    5556555555554 346899999999999999999987654

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.09  E-value=5.4e-10  Score=89.81  Aligned_cols=169  Identities=17%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCc--eeeeeeEEEEECCEEEEEEEEeCCCcccccc-----cCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYR   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~   78 (210)
                      ..++|+|.|.+|+|||||||+|-+-...+.. .++  ...+...........-++++||+||...-.-     +...-+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            5689999999999999999999753222111 111  1111111111112222578899999533211     1112255


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc-cccCCCCCCccCHHHHHHHHHH----cC
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQ----IG  153 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~  153 (210)
                      .-|.+|++.+-  +  |....-.+...+..  .++|+.+|-+|.|..-... ...+.........+.+.+.+.+    .+
T Consensus       114 ~yD~fiii~s~--r--f~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g  187 (376)
T PF05049_consen  114 RYDFFIIISSE--R--FTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG  187 (376)
T ss_dssp             G-SEEEEEESS--S----HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred             ccCEEEEEeCC--C--CchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence            67877777653  2  32222344455555  3789999999999632211 0001111001122333333222    22


Q ss_pred             --CcEEEEeccCCC--CCHHHHHHHHHHHHhC
Q 028362          154 --ASYYIECSSKTQ--QNVKAVFDAAIKVVIK  181 (210)
Q Consensus       154 --~~~~~~~Sa~~~--~~i~~~~~~i~~~~~~  181 (210)
                        .++.|.+|+.+-  .+...+.+.+...+..
T Consensus       188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             CCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence              346778999874  4466677777665543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.07  E-value=5.7e-10  Score=80.94  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             EEEEEeCCCccc----ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCc
Q 028362           57 NLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL  122 (210)
Q Consensus        57 ~~~i~D~~G~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~  122 (210)
                      .+.++|+||-..    ...++..+++.+|++|+|.+.++..+-.+. ..+.+......  ..+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~~--~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPDK--SRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTTC--SSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCCC--CeEEEEEcCC
Confidence            367899999643    235567778999999999999886655544 56666655443  3488898984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.05  E-value=1.1e-08  Score=80.24  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----------CCcee-eeeeEEEEECCEEEEEEEEeCCCccccc------
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY----------IPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYN------   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~------   70 (210)
                      .++|+|+|.+|+|||||+|.|.+.......          .++.. ......+.-++..+.++++||||-....      
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999976543221          11111 1112334457888999999999932110      


Q ss_pred             -------------------ccCcccc--cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 -------------------RLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 -------------------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                                         .......  ..+|+++|+++.+... +..+.-..+..+   ...+++|-|..|.|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L---s~~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL---SKRVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH---TTTSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh---cccccEEeEEecccccCH
Confidence                               0000011  1367999999876532 222112333333   446788989999998543

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.04  E-value=9.1e-10  Score=97.01  Aligned_cols=117  Identities=17%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCCC---------CCCce---eeee-----eEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD---------YIPTV---FDNF-----SANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~---------~~~~~---~~~~-----~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      .+.-+|+++|..++|||||+.+|...  .....         +.+..   +.++     ......++..+.+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            45568999999999999999999842  11110         00000   0000     001112445688899999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      .+|.......++.+|++++|+|.......... ..|.... .  .++|.+++.||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-~--~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-R--ERVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-H--cCCCeEEEEECchhhc
Confidence            99987777788999999999999766433322 2333222 2  2468899999999864

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.03  E-value=5.6e-09  Score=82.83  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=63.1

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+.+.++||+|...-.   ......+|.++++.+....   +++ ..+...+    .++|.++|+||+|+.....     
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~-----  189 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDL-QGIKAGL----MEIADIYVVNKADGEGATN-----  189 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHH-HHHHHHH----hhhccEEEEEcccccchhH-----
Confidence            5788999999854211   1245667888877543323   332 2222222    2567899999999975421     


Q ss_pred             CCCCccCH--H----HHHHHHHHc-C-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          135 PGLVPVTT--A----QGEELRKQI-G-ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       135 ~~~~~~~~--~----~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                           ...  .    ....+.... + ..+++.+||+++.|++++++++.+...
T Consensus       190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 000  0    001111111 1 125889999999999999999988644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01900 YchF YchF subfamily

Probab=99.03  E-value=6.6e-09  Score=80.86  Aligned_cols=80  Identities=18%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCE---------------EEEEEEEeCCCccccc----
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDYN----   70 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~----   70 (210)
                      |.|+|.|+||||||+|++.+........|... ........+.+.               ...+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998765332223221 111112222222               2358899999964321    


Q ss_pred             ccCcc---cccCccEEEEEEECC
Q 028362           71 RLRPL---SYRGADVFVLAFSLV   90 (210)
Q Consensus        71 ~~~~~---~~~~~~~~i~v~d~~   90 (210)
                      .+...   .++.+|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11112   256799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1e-08  Score=85.15  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=99.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC---------------------------CCCCceeeeeeE-EEEECC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT---------------------------DYIPTVFDNFSA-NVVAEG   53 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~-~~~~~~   53 (210)
                      ..+..+.++++|...+|||||+.+++..  ....                           ......+.+... ...++.
T Consensus       173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes  252 (603)
T KOG0458|consen  173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES  252 (603)
T ss_pred             CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence            4557799999999999999999988831  1110                           000001112111 233456


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHH--HHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYEN--VLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ....+++.|.||+..|......-...+|++++|+|++..+   .|+.  ...+....++.. .-..++++.||.|+.+-.
T Consensus       253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Ws  331 (603)
T KOG0458|consen  253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWS  331 (603)
T ss_pred             CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCcc
Confidence            7788999999999999887777888899999999997542   1110  011222222222 245678889999997653


Q ss_pred             ccccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHHHH
Q 028362          129 HYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV  171 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~  171 (210)
                      +      +.+......+..|. +..|.    ..|+++|+.+|+|+...
T Consensus       332 q------~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  332 Q------DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             H------HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            3      11112333334444 22222    27899999999997543

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.99  E-value=6.3e-10  Score=84.64  Aligned_cols=166  Identities=16%  Similarity=0.005  Sum_probs=94.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCc----------ccccccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~   75 (210)
                      +..+++++|.+|||||+|+|-++..+....... ..+.+...  -.-...-.+.+.|.||-          .++..+...
T Consensus       135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~i--n~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~  212 (320)
T KOG2486|consen  135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAI--NHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS  212 (320)
T ss_pred             CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceee--eeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence            458999999999999999999987653322111 22222221  11223346778999991          122333444


Q ss_pred             cccCcc---EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC-HHHHHHHHHH
Q 028362           76 SYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TAQGEELRKQ  151 (210)
Q Consensus        76 ~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  151 (210)
                      |+.+.+   -+++.+|++.+-.  ......++.+.+  .++|+.+|+||+|.........++++..... ....-..+..
T Consensus       213 Y~leR~nLv~~FLLvd~sv~i~--~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~  288 (320)
T KOG2486|consen  213 YLLERENLVRVFLLVDASVPIQ--PTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFL  288 (320)
T ss_pred             HHHhhhhhheeeeeeeccCCCC--CCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcccccee
Confidence            444433   3445556553321  111122233333  5799999999999877654333333222111 2222222222


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          152 IGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .. .|++.+|+.++.|+++++-.|.+..
T Consensus       289 ~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  289 VD-LPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             cc-CCceeeecccccCceeeeeehhhhh
Confidence            22 3777899999999999987776643

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.99  E-value=1.9e-09  Score=83.92  Aligned_cols=56  Identities=9%  Similarity=-0.000  Sum_probs=39.6

Q ss_pred             CcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       113 ~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      .+-++|+||+|+.+...          ...+......+. ....+++++||++++|++++++|+..+
T Consensus       231 ~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999975321          223333333333 334588999999999999999999764

>cd01855 YqeH YqeH

Probab=98.99  E-value=1.5e-09  Score=80.45  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=66.0

Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL  148 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
                      ++.++..+++++|++++|+|++++..-      |...+.....+.|+++|+||+|+....           ...+....+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            567788889999999999999876421      111222222468999999999996532           233333333


Q ss_pred             H-----HHcC--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          149 R-----KQIG--ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       149 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .     ...+  ..+++.+||+++.|++++++++.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3     2222  235789999999999999999988764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.99  E-value=6.7e-10  Score=82.50  Aligned_cols=130  Identities=16%  Similarity=0.195  Sum_probs=82.2

Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC--CCCcEEEEe
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS--PGVPVVLVG  119 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~piilv~  119 (210)
                      +-..+.|.+.|++||...+..|.+++.++..+++++.++...          ..++. ..+...+-.+.  .+.++|+.+
T Consensus       195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEe
Confidence            345678889999999999999999999999888887775432          22222 22333333332  689999999


Q ss_pred             eCccccccccccc------CCCCCCccCHHHHHHHHHHc----C-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          120 TKLDLREDKHYLA------DHPGLVPVTTAQGEELRKQI----G-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       120 nK~D~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||.|+..+.....      +..+--.-..+-+.+|..++    +     +..-..+.|.+.+||.-+|..+...++..
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~  351 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  351 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence            9999987643110      00000012233333333322    1     11233588999999999999988877654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.97  E-value=3.3e-08  Score=80.00  Aligned_cols=154  Identities=16%  Similarity=0.202  Sum_probs=92.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC----CCCC----------CCCC-------ceeeee----eEEEE-ECCEEEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN----KFPT----------DYIP-------TVFDNF----SANVV-AEGTTVNLGLW   61 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~----~~~~----------~~~~-------~~~~~~----~~~~~-~~~~~~~~~i~   61 (210)
                      .+-|.++|+.++|||||+|+|.+.    ....          -..+       |+..-|    ...+. .++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            467899999999999999999976    2221          0111       111111    11111 24556778899


Q ss_pred             eCCCcccc--------cc--c-------------------Cccccc-CccEEEEEE-ECC----ChhHHHHHHHHHHHHH
Q 028362           62 DTAGQEDY--------NR--L-------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPEL  106 (210)
Q Consensus        62 D~~G~~~~--------~~--~-------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~  106 (210)
                      ||+|-..-        ..  +                   ....+. .+++.|+|. |-+    .++.+.++...+++.+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99983211        11  0                   111234 678888887 543    1245555556777777


Q ss_pred             hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC--CCCHHHHHHHHH
Q 028362          107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT--QQNVKAVFDAAI  176 (210)
Q Consensus       107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~  176 (210)
                      ...  ++|+++|+||.|-...            ...+....+..+++. |++.+|+.+  .+.|..+++.+.
T Consensus       177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL  233 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVL  233 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHH
Confidence            764  7999999999994322            234445566777885 777777754  345555555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.95  E-value=1.5e-08  Score=80.26  Aligned_cols=87  Identities=20%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      .+.++|.+++|+|+.++.........|+..+..  .++|+++|+||+|+....           ..........+..+. 
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-  142 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-  142 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-
Confidence            468999999999998887665555777766654  479999999999996322           122234444555665 


Q ss_pred             EEEEeccCCCCCHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAI  176 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~  176 (210)
                      +++++||+++.|++++++.+.
T Consensus       143 ~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        143 DVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             eEEEEeCCCCccHHHHHhhcc
Confidence            788999999999999998775

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=7.9e-09  Score=80.29  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=103.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCcee-------------------eeeeE--EEEEC----CEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTVF-------------------DNFSA--NVVAE----GTTVN   57 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~~-------------------~~~~~--~~~~~----~~~~~   57 (210)
                      +..++|.++|.-..|||||..+|++-   .++++....+.                   ..|..  .+...    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            57899999999999999999999852   12211000000                   01110  11111    12245


Q ss_pred             EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362           58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  137 (210)
Q Consensus        58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~  137 (210)
                      +.+.|.||++-.-...-.-..-.|++++|+.++.+.--... .+-+..++-. .-..+|++-||+|+.......      
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~~E~Al------  159 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVSRERAL------  159 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceecHHHHH------
Confidence            67899999987544333334447899999999864311111 1111122211 245788999999996654200      


Q ss_pred             CccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362          138 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                        ...+++++|.+--  ...|++++||..+.||+-+++.+.+.+..+...
T Consensus       160 --E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         160 --ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             --HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence              1344555555432  124899999999999999999999998776544

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.4e-08  Score=82.05  Aligned_cols=154  Identities=15%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeeEEEE-ECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      |...|.-..|||||++.+.+..-.   +....  +.+....+. .+-.++.+.++|.||++++-+.....+...|.+++|
T Consensus         3 i~t~GhidHgkT~L~~altg~~~d~l~EekKR--G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv   80 (447)
T COG3276           3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKR--GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV   80 (447)
T ss_pred             EEEeeeeeccchhhhhhhcccccccchhhhhc--CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence            567788889999999999975432   22111  222222222 223335889999999999876666667789999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~  164 (210)
                      ++.++.-..+..  +.+..+... .....++|+||+|..+...           ..+...+....  +...+++.+|+++
T Consensus        81 V~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~~  146 (447)
T COG3276          81 VAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAKT  146 (447)
T ss_pred             EeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccccccc
Confidence            999644322221  222222221 2345689999999976531           12222222222  3344778999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028362          165 QQNVKAVFDAAIKVVI  180 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~  180 (210)
                      |.||+++.+.|.+...
T Consensus       147 g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         147 GRGIEELKNELIDLLE  162 (447)
T ss_pred             CCCHHHHHHHHHHhhh
Confidence            9999999999999885

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=4.1e-09  Score=88.69  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC---------ce------eeeeeE---EE---EECCEEEEEEEEe
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP---------TV------FDNFSA---NV---VAEGTTVNLGLWD   62 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~---------~~------~~~~~~---~~---~~~~~~~~~~i~D   62 (210)
                      .+.+..+|.++|.-++|||+|+.-|.....+.-..+         +.      +..+..   ++   ..+++.+.+++.|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            345678999999999999999999986543221111         11      001100   01   1257889999999


Q ss_pred             CCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           63 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        63 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      +||+-+|.......++-+|++++|+|+...-.+..  +.++...-.  .+.|+++|+||.|..
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq--~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQ--NRLPIVVVINKVDRL  262 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHh--ccCcEEEEEehhHHH
Confidence            99999999888888999999999999987776654  233322222  468999999999954

>smart00053 DYNc Dynamin, GTPase

Probab=98.90  E-value=1.1e-08  Score=78.18  Aligned_cols=69  Identities=20%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             EEEEEEeCCCcccc-------------cccCcccccC-ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362           56 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK  121 (210)
Q Consensus        56 ~~~~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  121 (210)
                      ..|+++|+||-...             ..+...++++ .+++++|+|+...-.-... ..+...+..  ...|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence            56889999997421             1244456664 4588899987543222221 233333322  46899999999


Q ss_pred             cccccc
Q 028362          122 LDLRED  127 (210)
Q Consensus       122 ~D~~~~  127 (210)
                      .|....
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            999764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1.5e-08  Score=87.88  Aligned_cols=118  Identities=20%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC-CCCC----ce---------eeeee---EEEEECCEEEEEEEEeCCC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-DYIP----TV---------FDNFS---ANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~-~~~~----~~---------~~~~~---~~~~~~~~~~~~~i~D~~G   65 (210)
                      ..+.-+|.|+|+.++|||||..+++.  +.... ....    +.         +.++.   .++...+ ++.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            45778999999999999999999983  22211 0000    00         11111   1222333 58889999999


Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |-+|.......++-+|++++|+|+...-..+.- ..|.+...   .++|.+++.||.|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~---~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK---YGVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh---cCCCeEEEEECcccccc
Confidence            999999999999999999999999876555543 45555443   36899999999997654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.85  E-value=2.5e-08  Score=84.86  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCC-CCceeeeeeEEEEECCEEEEEEEEeCCCcccccc-------c---Cc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------L---RP   74 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~---~~   74 (210)
                      ..++|+|+|.+||||||++|.+++.. +.... .+.+..........++  ..+.++||||......       +   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            34799999999999999999999865 33221 1222111122223344  5678899999754321       0   11


Q ss_pred             cccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCcccccc
Q 028362           75 LSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED  127 (210)
Q Consensus        75 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~  127 (210)
                      .++.  .+|++|+|..++......+. ..++..+.... .  -..+|||+|..|..+.
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            1222  47899999887633322111 23444444333 1  2467899999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01859 MJ1464 MJ1464

Probab=98.83  E-value=8.7e-09  Score=73.90  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      .++.+..+++|++++|+|+.++....+  ..+...+..  .+.|+++|+||+|+.....            ......+..
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~~   67 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIKE   67 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHHH
Confidence            345566778999999999987653322  123233322  3689999999999853211            111222333


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ..+. +++.+||+++.|++++++.+.+.+.
T Consensus        68 ~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          68 SEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             hCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            3443 7889999999999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.82  E-value=2.3e-08  Score=80.64  Aligned_cols=91  Identities=20%  Similarity=0.220  Sum_probs=64.4

Q ss_pred             cCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      +....+.++|.+++|+|+.++. ....+ ..|+..++.  .++|++||+||+|+.....            .+.......
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~~~~~  146 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQDRLQ  146 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHHHHHH
Confidence            4445688999999999998776 33333 566665533  5799999999999954321            122223334


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ..+. +++.+||+++.|++++++.+...
T Consensus       147 ~~g~-~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        147 QWGY-QPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             hcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence            5565 67899999999999999888643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.82  E-value=2.5e-08  Score=78.57  Aligned_cols=88  Identities=18%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             cccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           74 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ...+.++|.+++|+|+.++. ++..+ +.|+..+..  .++|+++|+||+|+.+..            .......+....
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~  137 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALAL  137 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence            34588999999999999887 77665 677776654  468999999999996431            111223333445


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      +. +++.+||+++.|+++++..+..
T Consensus       138 g~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         138 GY-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             CC-eEEEEECCCCccHHHHHhhhcc
Confidence            55 8889999999999999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.82  E-value=3e-09  Score=82.65  Aligned_cols=150  Identities=17%  Similarity=0.154  Sum_probs=91.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE--EEECCEEEEEEEEeCCCccc---------ccccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN--VVAEGTTVNLGLWDTAGQED---------YNRLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   75 (210)
                      ...-|.++|..|+|||||+++|......+...-....+-+..  -...+  -.+.+.||-|.-.         |+.... 
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg--~~vlltDTvGFisdLP~~LvaAF~ATLe-  253 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG--NFVLLTDTVGFISDLPIQLVAAFQATLE-  253 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC--cEEEEeechhhhhhCcHHHHHHHHHHHH-
Confidence            445789999999999999999996554332211111111111  11123  3455689988432         222222 


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCc----EEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      -...+|.++-|.|++.|.--... ...+..+.... +..|    ++=|=||.|..+...           .       .+
T Consensus       254 eVaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-----------e-------~E  314 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-----------E-------EE  314 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-----------c-------cc
Confidence            25679999999999998754443 45555555543 3333    455667888765432           0       12


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++   .+.+||.+|+|++++...+-.++..
T Consensus       315 ~n~---~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  315 KNL---DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cCC---ccccccccCccHHHHHHHHHHHhhh
Confidence            222   4679999999999999887766543

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.81  E-value=1.8e-08  Score=76.17  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=77.2

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChh----------HHHHHHHHHHHHHhccC--CCCcEEEEeeCcc
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS--PGVPVVLVGTKLD  123 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~piilv~nK~D  123 (210)
                      ++|+++|++||.+.+..|...+.++.++|||...++..          .+.+.. .+...+.++.  ..+.+|+.+||.|
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL-~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEAL-NLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHH-HHHHHHHhhhHHhhhheeEEecHHH
Confidence            56899999999999999999999999999999876432          222221 2222222222  4688999999999


Q ss_pred             ccccccc---------cc-------C---CCCCCc---c------CHHHHHHHHHHcC----CcEEEEeccCCCCCHHHH
Q 028362          124 LREDKHY---------LA-------D---HPGLVP---V------TTAQGEELRKQIG----ASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       124 ~~~~~~~---------~~-------~---~~~~~~---~------~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~  171 (210)
                      +..+...         .+       +   .++..+   +      ..++........+    .+....+.|.+.++|..+
T Consensus       281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV  360 (379)
T KOG0099|consen  281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  360 (379)
T ss_pred             HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence            7654220         00       0   000000   1      1111111111111    123345889999999999


Q ss_pred             HHHHHHHHhCC
Q 028362          172 FDAAIKVVIKP  182 (210)
Q Consensus       172 ~~~i~~~~~~~  182 (210)
                      |+.....+.+.
T Consensus       361 FnDcrdiIqr~  371 (379)
T KOG0099|consen  361 FNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.7e-07  Score=73.59  Aligned_cols=83  Identities=19%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--eeeeeeEEEE-----------E----CCEEEEEEEEeCCCcc---
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNFSANVV-----------A----EGTTVNLGLWDTAGQE---   67 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~-----------~----~~~~~~~~i~D~~G~~---   67 (210)
                      .+++.|+|.||||||||.|++....-...+.|.  +..+......           +    .-....+.++|++|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            378999999999999999999976543222232  2222211110           1    1234668889999843   


Q ss_pred             -cccccCccc---ccCccEEEEEEECC
Q 028362           68 -DYNRLRPLS---YRGADVFVLAFSLV   90 (210)
Q Consensus        68 -~~~~~~~~~---~~~~~~~i~v~d~~   90 (210)
                       .-+.+-..|   ++.+|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             334444444   56799999999987

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.5e-08  Score=80.23  Aligned_cols=162  Identities=14%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC------------------CCce---eeeee--EEE-----------EEC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------------------IPTV---FDNFS--ANV-----------VAE   52 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~------------------~~~~---~~~~~--~~~-----------~~~   52 (210)
                      -.+|++++|...+|||||+..|..+.++..+                  .+.+   ...|.  .++           ..+
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            3579999999999999999988866544311                  0000   00000  000           012


Q ss_pred             CEEEEEEEEeCCCcccccccCccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      .....++++|++|+..|.......+.  ..+...+|+++...-.+..  ++-+.++...  ++|+.++.+|+|+......
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence            23456789999999998765444433  3678888888876544432  3444454443  7999999999999876320


Q ss_pred             c--------------cCCCCCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHH
Q 028362          131 L--------------ADHPGLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       131 ~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      .              -.+..+.--+.+++..-+++   -++.|++.+|+.+|+|++-+-
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            0              00111111233444444443   356789999999999987543

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.78  E-value=2.2e-09  Score=81.59  Aligned_cols=148  Identities=14%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-----------CCCCCCce-----e------------eeeeEEEEECC-----
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-----------PTDYIPTV-----F------------DNFSANVVAEG-----   53 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-----------~~~~~~~~-----~------------~~~~~~~~~~~-----   53 (210)
                      +.+.|.|-|+||+|||||+++|...-.           ++. .|..     +            .-|-......+     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS-Sp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl  106 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS-SPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL  106 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG-GGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC-CCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence            568999999999999999998884210           111 1110     0            00111111111     


Q ss_pred             -------------EEEEEEEEeCCC--cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEE
Q 028362           54 -------------TTVNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV  118 (210)
Q Consensus        54 -------------~~~~~~i~D~~G--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv  118 (210)
                                   -.+.+.+++|.|  |.+..     ...-+|.+++|....-...++-+..-++++        +=++|
T Consensus       107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~-----I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi--------aDi~v  173 (266)
T PF03308_consen  107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVD-----IADMADTVVLVLVPGLGDEIQAIKAGIMEI--------ADIFV  173 (266)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH-----HHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEE
T ss_pred             cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH-----HHHhcCeEEEEecCCCccHHHHHhhhhhhh--------ccEEE
Confidence                         336677888887  43322     345589999999887666555442223322        22788


Q ss_pred             eeCcccccccccccCCCCCCccCHHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       119 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .||.|......           ...+.........      .+|.+.+||.++.||+++++.+.+..
T Consensus       174 VNKaD~~gA~~-----------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  174 VNKADRPGADR-----------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EE--SHHHHHH-----------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCChHHHHH-----------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            99999876653           3333333333221      25889999999999999999887633

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=3.2e-08  Score=79.86  Aligned_cols=116  Identities=14%  Similarity=0.089  Sum_probs=79.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc--CCCCC--------CCCCc----------eeeeeeE-EEEECCEEEEEEEEeCCCcc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS--NKFPT--------DYIPT----------VFDNFSA-NVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~--~~~~~--------~~~~~----------~~~~~~~-~~~~~~~~~~~~i~D~~G~~   67 (210)
                      -..+|+-.|.+|||||-.+|+.  +....        ....+          .+..++. -+..+..++.+.+.||||++
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            4678999999999999998882  22211        00111          1222222 23445667888999999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      +|.--.-..+..+|.++.|+|+...-.-+.  .++.+....  .++||+=..||.|.....
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrl--R~iPI~TFiNKlDR~~rd  149 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRL--RDIPIFTFINKLDREGRD  149 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhh--cCCceEEEeeccccccCC
Confidence            997766667888999999999975533222  333333222  689999999999987763

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.77  E-value=1.7e-08  Score=81.98  Aligned_cols=96  Identities=25%  Similarity=0.376  Sum_probs=68.7

Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      +++|..+...+.+.++++++|+|+.+...      .|...+.....+.|+++|+||+|+.+..           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            46777888888889999999999976542      2333333333468999999999997543           233333


Q ss_pred             H----HHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028362          146 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       146 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      .    ++++..+..  .++.+||+++.|++++++.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    345556642  47889999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=7.8e-08  Score=74.03  Aligned_cols=166  Identities=19%  Similarity=0.215  Sum_probs=101.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC---C-------CCCC-CCCc---eeeeee---EEEEECCEEEEEEEEeCCCc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN---K-------FPTD-YIPT---VFDNFS---ANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~-------~~~~-~~~~---~~~~~~---~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ..+.+++|..+|.-+.|||||..++..-   .       +... ..|.   .+.++.   ..+...+..|..  .|+||+
T Consensus         8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyah--VDcPGH   85 (394)
T COG0050           8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAH--VDCPGH   85 (394)
T ss_pred             CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEe--ccCCCh
Confidence            3567899999999999999999877631   1       1111 0111   122221   123334555554  999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      .+|-.....-....|+.|+|++++|...-+.- +..  ++.+. -..| +++++||+|+.++..       .......+.
T Consensus        86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi--Llarq-vGvp~ivvflnK~Dmvdd~e-------llelVemEv  154 (394)
T COG0050          86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQ-VGVPYIVVFLNKVDMVDDEE-------LLELVEMEV  154 (394)
T ss_pred             HHHHHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhh-cCCcEEEEEEecccccCcHH-------HHHHHHHHH
Confidence            99876555567778999999999987544332 111  11111 2465 456779999987543       222345677


Q ss_pred             HHHHHHcCC----cEEEEeccCCC-C-------CHHHHHHHHHHHHhCC
Q 028362          146 EELRKQIGA----SYYIECSSKTQ-Q-------NVKAVFDAAIKVVIKP  182 (210)
Q Consensus       146 ~~~~~~~~~----~~~~~~Sa~~~-~-------~i~~~~~~i~~~~~~~  182 (210)
                      .++..+|+.    .|++.-||..- +       .|.++++.+-+.+..+
T Consensus       155 reLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P  203 (394)
T COG0050         155 RELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP  203 (394)
T ss_pred             HHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence            788888864    36666666531 2       2556666655555444

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.76  E-value=7.6e-08  Score=74.39  Aligned_cols=155  Identities=11%  Similarity=0.008  Sum_probs=89.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-----------CCCCCCceeee----------------eeEEEEE--------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-----------PTDYIPTVFDN----------------FSANVVA--------   51 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-----------~~~~~~~~~~~----------------~~~~~~~--------   51 (210)
                      +...|-|.|.||+|||||+.+|.....           ++....|-+.-                |-.....        
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            446899999999999999998884321           11111111100                1001110        


Q ss_pred             ----------CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362           52 ----------EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK  121 (210)
Q Consensus        52 ----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK  121 (210)
                                +.-.+.+.|++|.|--+-.-   ...+-+|.+++|.-..-...++-+..-++++        -=++|.||
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi--------aDi~vINK  198 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI--------ADIIVINK  198 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh--------hheeeEec
Confidence                      12457788899987433211   1344588888887776666666553333322        22788999


Q ss_pred             cccccccccccCCCCCCccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          122 LDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .|........        .....+..+.     .....+|.+.+||..++|++++++.+.+-..
T Consensus       199 aD~~~A~~a~--------r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         199 ADRKGAEKAA--------RELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             cChhhHHHHH--------HHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            9976553200        0011111111     1112457889999999999999999876443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.73  E-value=3.6e-08  Score=69.54  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      +++++|.+|||||||+|++........ ..+.. ......+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK-TKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc-ccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999998764321 11111 11122233333   4688999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.71  E-value=8.4e-08  Score=77.33  Aligned_cols=89  Identities=17%  Similarity=0.241  Sum_probs=65.3

Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ..|+|.+++|+++....++..+ ..|+..+..  .++|++||+||+|+.+...         ...........+..+. +
T Consensus       118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~  184 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R  184 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence            5679999999999877788776 788765543  4689999999999965321         0011222333345565 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 028362          157 YIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ++++||+++.|++++++.+...
T Consensus       185 v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        185 VLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEEeCCCCcCHHHHHHHHhhC
Confidence            8999999999999999988653

>cd01858 NGP_1 NGP-1

Probab=98.68  E-value=9.2e-08  Score=68.69  Aligned_cols=90  Identities=16%  Similarity=0.073  Sum_probs=58.8

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      .+.++|.+++|+|+.++..-.+  ..+...+.....+.|+++|+||+|+.+..           ........+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~-----------~~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTW-----------VTARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHH-----------HHHHHHHHHhcCCcE-
Confidence            4678999999999988743211  23333443333468999999999995432           112233333332222 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ..+.+||+.+.|++++.+.+.+.+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            246799999999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.64  E-value=3.9e-07  Score=72.29  Aligned_cols=117  Identities=18%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCceeeeee-EEEEECCEEEEEEEEeCCCcccc---ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD----------YIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDY---NRL   72 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~---~~~   72 (210)
                      -.++|+++|++|.|||||+|.|.+......          ..|+...... ..+.-++..+.++++||||.-++   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            458999999999999999999997633222          2233333332 23444688899999999994322   111


Q ss_pred             Ccc-----------------------ccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           73 RPL-----------------------SYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        73 ~~~-----------------------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |..                       .+.  .+++++|.+-.+.. .+..+.-..+..+..   .+-+|-|..|.|..-.
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence            110                       111  26788888876533 333332233344443   3455656689997443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=1.1e-06  Score=70.09  Aligned_cols=116  Identities=18%  Similarity=0.204  Sum_probs=69.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC--------C-CCceeeee-eEEEEECCEEEEEEEEeCCCccccc-------
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--------Y-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-------   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~--------~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-------   70 (210)
                      .+.++++|++|.|||||+|.|+...+..+        . ..+..... ...+.-++..+.|+++||||..+.-       
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48999999999999999999887644332        1 11112211 2223346788999999999943221       


Q ss_pred             ------------------ccCccccc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 ------------------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 ------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                                        .+....+.  .+++++|.+..+.. .+..+.-..+..+..   .+.+|-|..|.|....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK---KVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc---cccccceeeccccCCH
Confidence                              11112233  46788888876543 233332233334443   4556666689997543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.57  E-value=2.3e-07  Score=67.58  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=36.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ..++++++|.||||||||+|++.+... .....|..... ...+..+   -.+.++|+||-
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~-~~~~~~~---~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS-MQEVHLD---KKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc-eEEEEeC---CCEEEEECcCC
Confidence            348999999999999999999998653 22222322211 1122222   24678999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01858 NGP_1 NGP-1

Probab=98.56  E-value=2.7e-07  Score=66.27  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ..++|+++|.+|||||||+|++.+..
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC
Confidence            45789999999999999999999754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.55  E-value=2.8e-07  Score=67.14  Aligned_cols=57  Identities=21%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ...++++++|.+|||||||+|++.+..+... .+..+.+.. ..+.++   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            3457999999999999999999998765321 111112221 123332   34678999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.55  E-value=8.1e-07  Score=67.37  Aligned_cols=151  Identities=16%  Similarity=0.153  Sum_probs=91.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc------c-ccCcccccCc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY------N-RLRPLSYRGA   80 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~-~~~~~~~~~~   80 (210)
                      -||-++|-|.+||||++..+....-. +.+..++-.......  ..+.-++++.|+||..+-      + .......+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~--~y~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVI--RYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceE--eccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            37899999999999999888754311 122222222111112  223467888999985432      1 2334467789


Q ss_pred             cEEEEEEECCChhHHHHHHHHHH----------------------------------------H----------------
Q 028362           81 DVFVLAFSLVSRASYENVLKKWI----------------------------------------P----------------  104 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~----------------------------------------~----------------  104 (210)
                      +.+++|.|+-.|-+-..+++.-+                                        .                
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999976532222211111                                        1                


Q ss_pred             ------HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          105 ------ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       105 ------~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                            .++..+.-+|.+.+.||+|...               .++   +--.+.+...+++||-.+.|++++++.+.+.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS---------------iEE---Ldii~~iphavpISA~~~wn~d~lL~~mwey  279 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS---------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLEKMWEY  279 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceee---------------eec---cceeeeccceeecccccccchHHHHHHHhhc
Confidence                  1111111257778888888633               222   2223445567899999999999999999885


Q ss_pred             H
Q 028362          179 V  179 (210)
Q Consensus       179 ~  179 (210)
                      +
T Consensus       280 L  280 (358)
T KOG1487|consen  280 L  280 (358)
T ss_pred             c
Confidence            5

>cd01859 MJ1464 MJ1464

Probab=98.52  E-value=3.8e-07  Score=65.34  Aligned_cols=56  Identities=21%  Similarity=0.168  Sum_probs=37.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   65 (210)
                      ...+++++|.+|+|||||+|++.+... ....++.+.+........+  ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence            457899999999999999999996543 2223444433322222112  2578899998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.48  E-value=2.1e-07  Score=74.18  Aligned_cols=164  Identities=20%  Similarity=0.203  Sum_probs=95.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----------e--e--eeeeEE---------EE-----------
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------V--F--DNFSAN---------VV-----------   50 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~----------~--~--~~~~~~---------~~-----------   50 (210)
                      .+.++.|...|.-+.|||||.-.|..+..++..-.+          .  +  .+.+..         +.           
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            456789999999999999999988876654321110          0  0  001111         00           


Q ss_pred             --ECCEEEEEEEEeCCCcccccc--cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           51 --AEGTTVNLGLWDTAGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        51 --~~~~~~~~~i~D~~G~~~~~~--~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                        ++..+-.+.++|+.|++.|-+  +...+=+..|..++++.+++..+-..  ++-+.+...  .+.|++++.||+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCc
Confidence              111334567899999998743  23333456899999999988765433  333333322  4799999999999987


Q ss_pred             cccccc---C------CCCCCc--c-CHHHH--HHHHHH--cCCcEEEEeccCCCCCHHHHH
Q 028362          127 DKHYLA---D------HPGLVP--V-TTAQG--EELRKQ--IGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       127 ~~~~~~---~------~~~~~~--~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      +.....   +      .-...+  + +....  ...+-+  .+..|+|.+|+.+|+|++-+.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~  331 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD  331 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence            643000   0      000000  0 00000  111111  235799999999999987544

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.47  E-value=9.4e-07  Score=63.30  Aligned_cols=84  Identities=17%  Similarity=0.071  Sum_probs=54.6

Q ss_pred             cEEEEEEECCChhHHHHHHHHHH-HHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      |++++|+|+.++.+....  .+. ..+.  ..++|+++|+||+|+.+...           .......+....+ ...+.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIK--EKGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHh--cCCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence            678999999887654422  111 1222  24789999999999954321           1112222322333 46788


Q ss_pred             eccCCCCCHHHHHHHHHHHHh
Q 028362          160 CSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      +||+++.|++++.+.+.+...
T Consensus        65 vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             EeccCCcChhhHHHHHHHHhH
Confidence            999999999999998877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.47  E-value=8.6e-07  Score=70.62  Aligned_cols=118  Identities=21%  Similarity=0.234  Sum_probs=64.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC------------------CCCCceeeeee-E----EE--------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT------------------DYIPTVFDNFS-A----NV--------------   49 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~-~----~~--------------   49 (210)
                      -++||+++|.-.+|||||+..|..+.++.                  ...+..+.++- .    .+              
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            35799999999999999998777554432                  11111111110 0    00              


Q ss_pred             -EECCEEEEEEEEeCCCcccccccCccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           50 -VAEGTTVNLGLWDTAGQEDYNRLRPLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        50 -~~~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                       ..++..--++++|++|++.|-...-.-  =+-.|...+++-.+-.  +.-...+-+.....  -.+|+.+|.+|+|..+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALa--L~VPVfvVVTKIDMCP  287 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALA--LHVPVFVVVTKIDMCP  287 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhh--hcCcEEEEEEeeccCc
Confidence             012233456889999999985432211  1235555555544321  11111111111111  2589999999999887


Q ss_pred             cc
Q 028362          127 DK  128 (210)
Q Consensus       127 ~~  128 (210)
                      .+
T Consensus       288 AN  289 (641)
T KOG0463|consen  288 AN  289 (641)
T ss_pred             HH
Confidence            74

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=7.4e-07  Score=69.96  Aligned_cols=57  Identities=26%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ...++++++|.+|||||||+|++.+.... ....|..... ...+....   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG-QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc-eEEEEeCC---CEEEEECCCc
Confidence            35689999999999999999999976532 2222222111 11222322   3678999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.42  E-value=7.1e-07  Score=62.90  Aligned_cols=77  Identities=14%  Similarity=0.108  Sum_probs=50.8

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      .+..+|++++|+|+.++.+..+  ..+...+.....++|+++|+||+|+.+..            ......+..+..+. 
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~-   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI-   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence            5678999999999988765442  12333333222578999999999995432            12234444455554 


Q ss_pred             EEEEeccCCCCC
Q 028362          156 YYIECSSKTQQN  167 (210)
Q Consensus       156 ~~~~~Sa~~~~~  167 (210)
                      .++.+||.++.+
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            788999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.42  E-value=1.5e-06  Score=63.32  Aligned_cols=88  Identities=20%  Similarity=0.138  Sum_probs=58.6

Q ss_pred             cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           74 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ...+.++|.+++|+|+.++....+.  .+...+    .+.|+++|+||+|+.+..            ......++.+..+
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~~   75 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFESKG   75 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHhcC
Confidence            4467889999999999876543221  222222    357999999999995331            1111212222223


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                       ..++.+||+++.|++++.+.+...+.
T Consensus        76 -~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          76 -EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             -CeEEEEECCCcccHHHHHHHHHHHHH
Confidence             36788999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.41  E-value=1.4e-06  Score=68.81  Aligned_cols=56  Identities=27%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ..++++++|.+|||||||+|++.+... .....|...... ..+..+.   .+.++||||-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ-QWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE-EEEEeCC---cEEEEECCCc
Confidence            568999999999999999999998653 222233222211 1222232   3678999997

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=6.7e-06  Score=70.02  Aligned_cols=119  Identities=17%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeee---------------------------------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNF---------------------------------------   45 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~---------------------------------------   45 (210)
                      ....||++.|..++||||++|+++..+.- +...|++....                                       
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            45689999999999999999999965432 21112111000                                       


Q ss_pred             ----eEEEEECCEEE-----EEEEEeCCCcc---cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC
Q 028362           46 ----SANVVAEGTTV-----NLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV  113 (210)
Q Consensus        46 ----~~~~~~~~~~~-----~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  113 (210)
                          -..+..++...     .+.++|.||-+   ...+-...+..++|++|+|..+.+.-...+  ..++......  ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se--k~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE--KQFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH--HHHHHHhhcc--CC
Confidence                00111111111     35678999953   445556677889999999998866655444  3333333332  23


Q ss_pred             cEEEEeeCccccccc
Q 028362          114 PVVLVGTKLDLREDK  128 (210)
Q Consensus       114 piilv~nK~D~~~~~  128 (210)
                      .|.|+.||.|.....
T Consensus       263 niFIlnnkwDasase  277 (749)
T KOG0448|consen  263 NIFILNNKWDASASE  277 (749)
T ss_pred             cEEEEechhhhhccc
Confidence            355667898986653

>cd01855 YqeH YqeH

Probab=98.35  E-value=1e-06  Score=65.28  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .+++++|.+|||||||+|.|.+..
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.34  E-value=5.4e-07  Score=64.41  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++++|++|||||||+|.|....
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            67999999999999999999763

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.31  E-value=3.1e-05  Score=54.87  Aligned_cols=147  Identities=18%  Similarity=0.238  Sum_probs=82.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCC-Cccccc--------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA-GQEDYN--------------   70 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~~~--------------   70 (210)
                      +..+||.+-|+|||||||++.++....-...  -+.+-.+..++..+++..-|.+.|+. |.+..-              
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4568999999999999999998885332111  22333455567778888888889888 322110              


Q ss_pred             ----cc-------CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCC
Q 028362           71 ----RL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLV  138 (210)
Q Consensus        71 ----~~-------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~  138 (210)
                          .+       ....++.||  ++++|=-.+-.+.  ...+.+.++..- ++.|++.++.+.+..+-           
T Consensus        81 V~v~~le~i~~~al~rA~~~aD--vIIIDEIGpMElk--s~~f~~~ve~vl~~~kpliatlHrrsr~P~-----------  145 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEAD--VIIIDEIGPMELK--SKKFREAVEEVLKSGKPLIATLHRRSRHPL-----------  145 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCC--EEEEecccchhhc--cHHHHHHHHHHhcCCCcEEEEEecccCChH-----------
Confidence                00       011123344  3444544443332  244555554433 57887777766654221           


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                         .   ++ ....+. .++.   .+..|-+.+++.+...+.
T Consensus       146 ---v---~~-ik~~~~-v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         146 ---V---QR-IKKLGG-VYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             ---H---HH-hhhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence               1   12 223332 2222   466677788888877664

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=6e-06  Score=69.13  Aligned_cols=112  Identities=19%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +.++=|+++|+||+||||||+.|+..--.    .|+.........+.++...+++.++|  .+..+++. ..+-||.+++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlL  139 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLL  139 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEE
Confidence            45677889999999999999988864311    11111111223457888899999999  33444443 4566899999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCccccccc
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDK  128 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~  128 (210)
                      ++|.+-.-..+.  ..++.++..+.  .| ++-|++..|+....
T Consensus       140 lIdgnfGfEMET--mEFLnil~~HG--mPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         140 LIDGNFGFEMET--MEFLNILISHG--MPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             EeccccCceehH--HHHHHHHhhcC--CCceEEEEeecccccCh
Confidence            999865544333  46666776653  45 55788999997764

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.30  E-value=1.9e-06  Score=68.95  Aligned_cols=56  Identities=25%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~   66 (210)
                      .+.+++.++|.||||||||||+|.+... .....|  +.+-.. .+....   .+.++||||-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence            3458899999999999999999998764 222233  222221 223332   2678999995

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.29  E-value=3e-06  Score=60.69  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ....+++++|.+|||||||+|.+.+... .....+....... ....+   ..+.++||||.
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~-~~~~~---~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ-EVKLD---NKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE-EEEec---CCEEEEECCCC
Confidence            3568899999999999999999997652 2222222211111 12222   24778999983

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.28  E-value=4.5e-06  Score=65.51  Aligned_cols=90  Identities=21%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ....+..+|++++|+|+.++.+..+.  .+...+    .+.|+++|+||+|+.+..           . .....+..+..
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~-----------~-~~~~~~~~~~~   76 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA-----------V-TKQWLKYFEEK   76 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH-----------H-HHHHHHHHHHc
Confidence            34467889999999999876543321  222233    357999999999995331           1 11222222333


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +. +++.+||+++.|++++.+.+.+.+..
T Consensus        77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        77 GI-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            43 67889999999999999988877644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK13796 GTPase YqeH; Provisional

Probab=98.28  E-value=5e-06  Score=67.79  Aligned_cols=93  Identities=24%  Similarity=0.372  Sum_probs=60.0

Q ss_pred             cccccCcccccCcc-EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH--
Q 028362           68 DYNRLRPLSYRGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ--  144 (210)
Q Consensus        68 ~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~--  144 (210)
                      .|...... +..++ .+++|+|+.|..      ..|...+.....+.|+++|+||+|+.+..           ...+.  
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~  119 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVK  119 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHH
Confidence            34443332 33444 889999997743      22333444333478999999999996532           22223  


Q ss_pred             --HHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028362          145 --GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       145 --~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                        ...+++..+..  .++.+||+++.|++++++.+.+.
T Consensus       120 ~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        120 NWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence              33345555542  57889999999999999998664

>PRK12288 GTPase RsgA; Reviewed

Probab=98.24  E-value=1.6e-06  Score=70.04  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|.+|||||||+|+|....
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            6899999999999999999754

>TIGR00092 GTP-binding protein YchF

Probab=98.24  E-value=6.1e-06  Score=66.67  Aligned_cols=81  Identities=19%  Similarity=0.087  Sum_probs=52.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCce--eeeeeEEEEECC---------------EEEEEEEEeCCCccccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTV--FDNFSANVVAEG---------------TTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~~~   70 (210)
                      +++.|+|.|++|||||++.+.+... ...+.|..  ..... .+.+.+               ....+.+.|+||...-.
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g-~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG-VVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCcee-EEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            7899999999999999999998765 33222222  22211 222222               22467889999964421


Q ss_pred             ----ccCc---ccccCccEEEEEEECC
Q 028362           71 ----RLRP---LSYRGADVFVLAFSLV   90 (210)
Q Consensus        71 ----~~~~---~~~~~~~~~i~v~d~~   90 (210)
                          .+-.   ..++++|+++.|++..
T Consensus        82 s~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2222   2477899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.23  E-value=6.3e-06  Score=61.95  Aligned_cols=60  Identities=20%  Similarity=0.299  Sum_probs=40.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC--------CCCC-ceeee-eeEEEEECCEEEEEEEEeCCCc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT--------DYIP-TVFDN-FSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~--------~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      -.++|+++|.+|.|||||+|.++......        ...| |+... .+..+.-++...+++++||||.
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf  114 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF  114 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence            35899999999999999999988533211        1112 22211 1334455778889999999994

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.22  E-value=1.1e-05  Score=61.37  Aligned_cols=88  Identities=16%  Similarity=0.040  Sum_probs=52.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCC--CCc-eeeeeeEEEEECCEEEEEEEEeCCCccccccc------Cc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY--IPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL------RP   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~   74 (210)
                      .+..-|.|+|++++|||+|+|++.+.  .|....  .++ .+..........+....+.++||+|.......      ..
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            45567899999999999999999988  654221  122 22222211111124467889999997543221      11


Q ss_pred             ccccC--ccEEEEEEECCChh
Q 028362           75 LSYRG--ADVFVLAFSLVSRA   93 (210)
Q Consensus        75 ~~~~~--~~~~i~v~d~~~~~   93 (210)
                      ..+..  ++.+|+..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            22233  67777776665443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.20  E-value=1.2e-05  Score=64.15  Aligned_cols=95  Identities=12%  Similarity=0.074  Sum_probs=54.1

Q ss_pred             EEEEEEEEeCCCccccccc--------C---ccc-ccCccEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEee
Q 028362           54 TTVNLGLWDTAGQEDYNRL--------R---PLS-YRGADVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGT  120 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~--------~---~~~-~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~n  120 (210)
                      ..+.+.++||||.......        .   ... -...+..++|.|++.... +..+ ..+.+.      --+--+|+|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a-~~f~~~------~~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA-KAFHEA------VGLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH-HHHHhh------CCCCEEEEE
Confidence            4578899999997543211        0   001 124667899999985432 2221 222211      124468889


Q ss_pred             CcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362          121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      |.|.....              -.+...+...+. |+..++  +|++++++-
T Consensus       268 KlD~t~~~--------------G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        268 KLDGTAKG--------------GVVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            99965432              234444556665 666666  788887653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.19  E-value=8.3e-06  Score=64.40  Aligned_cols=90  Identities=22%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      ....+..+|++++|+|+.++.+..+  ..+...+    .+.|+++|+||+|+.+..            ..+...++.+..
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~   79 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQ   79 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHc
Confidence            3446788999999999977654332  1222232    268999999999995321            112222222333


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +. +++.+||+++.|++++.+.+.+.+..
T Consensus        80 ~~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         80 GI-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            43 67889999999999999988877643

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.18  E-value=1.4e-05  Score=63.05  Aligned_cols=84  Identities=21%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEE---------------CCEEEEEEEEeCCCcccc-
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVA---------------EGTTVNLGLWDTAGQEDY-   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~---------------~~~~~~~~i~D~~G~~~~-   69 (210)
                      ..+++.|+|.|+||||||+|.+..........|....+- ...+.+               ......++++|++|.-.- 
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            568999999999999999999998776665555442221 111211               125578999999985432 


Q ss_pred             ---cccCccc---ccCccEEEEEEECC
Q 028362           70 ---NRLRPLS---YRGADVFVLAFSLV   90 (210)
Q Consensus        70 ---~~~~~~~---~~~~~~~i~v~d~~   90 (210)
                         ..+-..+   ++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence               3333333   56799999988875

>PRK14974 cell division protein FtsY; Provisional

Probab=98.17  E-value=3.8e-06  Score=67.38  Aligned_cols=95  Identities=14%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             EEEEEEEeCCCcccccc-cCc---cc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           55 TVNLGLWDTAGQEDYNR-LRP---LS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~-~~~---~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      .+.+.++||+|...... +..   ..  .-..+..++|.|++......+....+...+      -+--+|+||.|....-
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~------~~~giIlTKlD~~~~~  295 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV------GIDGVILTKVDADAKG  295 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC------CCCEEEEeeecCCCCc
Confidence            35689999999754321 111   11  124778899999976543332222222211      1345778999996543


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362          129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      .              -+...+...+. |+..++  +|++++++.
T Consensus       296 G--------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        296 G--------------AALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             c--------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence            2              23344444565 666665  788887765

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=5.6e-06  Score=71.20  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------CCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------YIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      .....-+++++..-..|||||+..|+..  .....            ...+.+.+..- .+..--+++.+.++|+|||-+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd   84 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD   84 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence            4456678999999999999999998842  12111            01111222111 122233668899999999999


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcc
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD  123 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D  123 (210)
                      |.+......+-+|+++..+|+...-.-+..  ..+.....  ....+++|.||+|
T Consensus        85 f~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkid  135 (887)
T KOG0467|consen   85 FSSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhh
Confidence            999999999999999999999755333322  22222111  3567888999999

>PRK01889 GTPase RsgA; Reviewed

Probab=98.12  E-value=1.5e-05  Score=64.74  Aligned_cols=85  Identities=20%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      ...++|.+++|+++..+-.... .+.++..++.  .++|.+||+||+|+.+...          ...+....+  ..+. 
T Consensus       109 iaANvD~vliV~s~~p~~~~~~-ldr~L~~a~~--~~i~piIVLNK~DL~~~~~----------~~~~~~~~~--~~g~-  172 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRR-IERYLALAWE--SGAEPVIVLTKADLCEDAE----------EKIAEVEAL--APGV-  172 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhH-HHHHHHHHHH--cCCCEEEEEEChhcCCCHH----------HHHHHHHHh--CCCC-
Confidence            3678999999999964333333 3566666555  4678899999999964310          011222222  2233 


Q ss_pred             EEEEeccCCCCCHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAI  176 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~  176 (210)
                      +.+.+|++++.|++++..++.
T Consensus       173 ~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        173 PVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             cEEEEECCCCccHHHHHHHhh
Confidence            778899999999999988874

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.11  E-value=1.8e-05  Score=73.56  Aligned_cols=113  Identities=25%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCC----CCc--eeeeeeEEEEECCEEEEEEEEeCCCcc--------cccccCccc
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPTDY----IPT--VFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLS   76 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   76 (210)
                      .+|+|++|+||||+++.- +-.++-..    ..+  .+.+......+.+   .-+++|++|..        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999876 22232110    001  1111111122222   23579999932        122334444


Q ss_pred             c---------cCccEEEEEEECCCh-----hHHHH---HHHHHHHHHhcc-CCCCcEEEEeeCcccccc
Q 028362           77 Y---------RGADVFVLAFSLVSR-----ASYEN---VLKKWIPELQHY-SPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        77 ~---------~~~~~~i~v~d~~~~-----~s~~~---~~~~~~~~~~~~-~~~~piilv~nK~D~~~~  127 (210)
                      +         +-.+++|+++|+.+-     +....   .....++.+... ....||.+|+||+|+..-
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            2         247899999999642     21111   123334444433 368999999999998644

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.4e-05  Score=61.72  Aligned_cols=166  Identities=17%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc-------CC---CCCC-CCC---ceeeeee---EEEEECCEEEEEEEEeCCCcc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS-------NK---FPTD-YIP---TVFDNFS---ANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~-------~~---~~~~-~~~---~~~~~~~---~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      .+.+.+|.-+|.-..|||||-.++..       .+   |.+- .-|   ..+.++.   ..+......|.  =.|+||+.
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYa--H~DCPGHA  128 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYA--HTDCPGHA  128 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccc--cCCCCchH
Confidence            45778999999999999999887662       11   1110 011   1122221   12222333443  38999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      +|-.....-....|+.|+|+..+|...-+.- +.++  +.+...=..+++..||.|+.++.+       +......++.+
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~MPQTr-EHlL--LArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RE  198 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPMPQTR-EHLL--LARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRE  198 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCCcchH-HHHH--HHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHH
Confidence            9876666567778999999999997654432 2221  222122245778889999986543       22234556677


Q ss_pred             HHHHcCC----cEEEEecc---CCCCC-------HHHHHHHHHHHHhCC
Q 028362          148 LRKQIGA----SYYIECSS---KTQQN-------VKAVFDAAIKVVIKP  182 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa---~~~~~-------i~~~~~~i~~~~~~~  182 (210)
                      +..+++.    .|.+.-||   ..+.+       |.++++.+-..+..+
T Consensus       199 lLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P  247 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP  247 (449)
T ss_pred             HHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence            7777753    47776444   45532       445555444444433

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.09  E-value=1.5e-05  Score=62.39  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=54.8

Q ss_pred             EEEEEEEEeCCCcccccccCc------------ccccCccEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEee
Q 028362           54 TTVNLGLWDTAGQEDYNRLRP------------LSYRGADVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGT  120 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~------------~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~n  120 (210)
                      ..+.+.++||+|........-            ..-..++..++|+|++.... +..+ ..+.+.+      -+--+|+|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-~~f~~~~------~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-KVFNEAV------GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH-HHHHhhC------CCCEEEEE
Confidence            447889999999754322110            11123788999999975432 2221 2222211      13468899


Q ss_pred             CcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 028362          121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  172 (210)
                      |.|......              .+.......+. |+..++  +|++++++-
T Consensus       226 KlDe~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            999865432              33444455565 665565  777787654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=1.5e-05  Score=64.67  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=61.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCce-eeee---------------eEEEE-E-----------CCEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTV-FDNF---------------SANVV-A-----------EGTTVN   57 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~-~~~~---------------~~~~~-~-----------~~~~~~   57 (210)
                      --++|+|++||||||++.+|.......   ...-.. .+.+               ..... +           .-....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            367899999999999999887532100   000000 0000               00000 1           013457


Q ss_pred             EEEEeCCCcccccccCc---ccc---cCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCC--cEEEEeeCcccccc
Q 028362           58 LGLWDTAGQEDYNRLRP---LSY---RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGV--PVVLVGTKLDLRED  127 (210)
Q Consensus        58 ~~i~D~~G~~~~~~~~~---~~~---~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~--piilv~nK~D~~~~  127 (210)
                      +.++|++|.........   ..+   ....-.++|++.+.. +...++...|...........  +-=+|+||.|....
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            78899999664332111   011   223456788888754 444444344433322111111  23477899998654

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.08  E-value=4.8e-06  Score=65.71  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      -.++++|++|||||||+|.+.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999999754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=1.1e-05  Score=62.04  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=43.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-----eEEEEECCEEEEEEEEeCCC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-----SANVVAEGTTVNLGLWDTAG   65 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~D~~G   65 (210)
                      -.++|+++|..|.|||||+..|.+-.|.....+......     ++...-.+..+++++.|+.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            358999999999999999999999887654333222222     22233357788999999998

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.03  E-value=0.00056  Score=55.96  Aligned_cols=154  Identities=18%  Similarity=0.250  Sum_probs=89.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--------------CCCCCC-------ceeeee----eEEEEE-CCEEEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKF--------------PTDYIP-------TVFDNF----SANVVA-EGTTVNLGLW   61 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~--------------~~~~~~-------~~~~~~----~~~~~~-~~~~~~~~i~   61 (210)
                      .+=+.++|+-.+|||||++||-.-..              ++-.++       |+...|    ...+.+ ++-.+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            35678999999999999999984210              111111       111112    122333 5778899999


Q ss_pred             eCCC--------ccc--ccccCcc-------cccCc------------c--EEEEEEECC----ChhHHHHHHHHHHHHH
Q 028362           62 DTAG--------QED--YNRLRPL-------SYRGA------------D--VFVLAFSLV----SRASYENVLKKWIPEL  106 (210)
Q Consensus        62 D~~G--------~~~--~~~~~~~-------~~~~~------------~--~~i~v~d~~----~~~s~~~~~~~~~~~~  106 (210)
                      |+.|        +.+  -.++...       -+..|            .  ++++.-|-+    .++.+.++.+...+.+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            9997        111  0111110       01111            1  333333322    3567777766777777


Q ss_pred             hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC--CCCHHHHHHHHH
Q 028362          107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT--QQNVKAVFDAAI  176 (210)
Q Consensus       107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~  176 (210)
                      ...  ++|+++++|-.+-...            .+.+.+.++.++|+. |.+++++.+  ...|..+++.+.
T Consensus       177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence            664  6899999987754333            467788888899997 778877754  344555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.03  E-value=1.5e-05  Score=57.35  Aligned_cols=65  Identities=11%  Similarity=-0.009  Sum_probs=36.8

Q ss_pred             EEEEEEEeCCCcccccccC--------cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362           55 TVNLGLWDTAGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  124 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~  124 (210)
                      .....++|++|-.+-....        ....-..+.++.++|..+-.........+...++...     ++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad-----~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD-----RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC-----EEEEecccC
Confidence            3566789999964221111        1123357889999997544332211233444554433     668899996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.2e-05  Score=65.07  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|.+|||||||+|.|....
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999999653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.01  E-value=8e-06  Score=62.97  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++++|.+|||||||+|++....
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            67899999999999999999653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.01  E-value=3.8e-05  Score=62.32  Aligned_cols=150  Identities=17%  Similarity=0.104  Sum_probs=76.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEE-------------------------------CCEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-------------------------------EGTTVN   57 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~   57 (210)
                      =-|+++|+.||||||-+-+|.....-....+..+.-...++.+                               .-.++.
T Consensus       204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d  283 (407)
T COG1419         204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD  283 (407)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence            3578999999999998887764332111112221111111111                               115568


Q ss_pred             EEEEeCCCcccccccC----cccccC--ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCccccccccc
Q 028362           58 LGLWDTAGQEDYNRLR----PLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHY  130 (210)
Q Consensus        58 ~~i~D~~G~~~~~~~~----~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~~~~~  130 (210)
                      +.++||.|...+....    ..++..  ..-..+|++++....      .+.+.+... ..+|+ -+|+||.|....   
T Consensus       284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~------dlkei~~~f-~~~~i~~~I~TKlDET~s---  353 (407)
T COG1419         284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYE------DLKEIIKQF-SLFPIDGLIFTKLDETTS---  353 (407)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchH------HHHHHHHHh-ccCCcceeEEEcccccCc---
Confidence            8999999987664321    122222  234456777764421      222233333 23444 377899998653   


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH-HHHH----HHHHHHHhCC
Q 028362          131 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAVF----DAAIKVVIKP  182 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~~  182 (210)
                                 .-....+..+.+. |.-.+  .+|.++ ++++    .++++.+..-
T Consensus       354 -----------~G~~~s~~~e~~~-PV~Yv--T~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         354 -----------LGNLFSLMYETRL-PVSYV--TNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             -----------hhHHHHHHHHhCC-CeEEE--eCCCCCCchhhhcChHHHHHHHhcc
Confidence                       3344455555554 32222  245554 3333    4566666543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.01  E-value=4.5e-05  Score=63.01  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             EEEEEEEeCCCcccccc-cCc---c--cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           55 TVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .+.+.++||+|...... +..   .  .....+-+++|.|++......+...    .+...  --+--+|+||.|....
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~~--~~~~g~IlTKlD~~ar  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKDS--VDVGSVIITKLDGHAK  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHhc--cCCcEEEEECccCCCC
Confidence            57889999999643321 101   0  1224678999999876544333222    33221  1355688999998644

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=4.5e-05  Score=60.95  Aligned_cols=116  Identities=19%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCceeeeee------------EEEEEC------C--------------
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFS------------ANVVAE------G--------------   53 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~------------~~~~~~------~--------------   53 (210)
                      .=|+++|.=..||||+++-|....++..   ..||+....-            ....++      +              
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            4589999999999999999998877642   2333321110            001111      0              


Q ss_pred             ------EEEEEEEEeCCCcccc-----------cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE
Q 028362           54 ------TTVNLGLWDTAGQEDY-----------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV  116 (210)
Q Consensus        54 ------~~~~~~i~D~~G~~~~-----------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii  116 (210)
                            .--.++++|+||.-.-           .....-+...+|.+|++||...-+--++. ...+..+..+  +-.+-
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiR  215 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIR  215 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeE
Confidence                  1124678999994222           22222346679999999998654333332 3444454443  44566


Q ss_pred             EEeeCcccccc
Q 028362          117 LVGTKLDLRED  127 (210)
Q Consensus       117 lv~nK~D~~~~  127 (210)
                      ||+||.|..+.
T Consensus       216 VVLNKADqVdt  226 (532)
T KOG1954|consen  216 VVLNKADQVDT  226 (532)
T ss_pred             EEeccccccCH
Confidence            77899999554

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.99  E-value=5.9e-06  Score=64.52  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..+++|.+|||||||+|+|...
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCch
Confidence            5689999999999999999963

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.95  E-value=1.4e-05  Score=65.00  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++.++|.+|||||||+|++....
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~  178 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQN  178 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhc
Confidence            479999999999999999999743

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.87  E-value=4.3e-05  Score=56.49  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=46.7

Q ss_pred             CCCcEEEEeeCcccccccc------cccC-------CCCCCcc------CHHHHHHHHHHcCCcEEEEeccCCCCCHHHH
Q 028362          111 PGVPVVLVGTKLDLREDKH------YLAD-------HPGLVPV------TTAQGEELRKQIGASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       111 ~~~piilv~nK~D~~~~~~------~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  171 (210)
                      -.+|-|-|.+|.|+.....      ..++       +.++...      ....+..+...++...|++....+.++|+.+
T Consensus       163 lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~i  242 (273)
T KOG1534|consen  163 LEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINII  242 (273)
T ss_pred             hcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHH
Confidence            3789999999999977622      0000       1111111      1233445556678888999999999999999


Q ss_pred             HHHHHHHHhC
Q 028362          172 FDAAIKVVIK  181 (210)
Q Consensus       172 ~~~i~~~~~~  181 (210)
                      +..+-..+..
T Consensus       243 L~~ID~aiQy  252 (273)
T KOG1534|consen  243 LSYIDDAIQY  252 (273)
T ss_pred             HHHHHHHHHh
Confidence            9888776653

>PRK00098 GTPase RsgA; Reviewed

Probab=97.87  E-value=2.1e-05  Score=62.40  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++++|.+|||||||+|.|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998654

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.84  E-value=0.00019  Score=56.29  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=66.0

Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      +....+.+.|-.++|+++.+|+--......++-..+.  .++..+|++||.|+.....          ...++.......
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~----------~~~~~~~~~y~~  139 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEE----------AAVKELLREYED  139 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchH----------HHHHHHHHHHHh
Confidence            3344455688888888988887544445666655555  4677888899999987643          211345555666


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          152 IGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      .+. +.+.+|++++.+++++...+..
T Consensus       140 ~gy-~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         140 IGY-PVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             CCe-eEEEecCcCcccHHHHHHHhcC
Confidence            776 7788999999999999887754

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=1.6e-05  Score=61.88  Aligned_cols=167  Identities=15%  Similarity=0.157  Sum_probs=95.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCce--eeee----------------------------eEEEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIPTV--FDNF----------------------------SANVV   50 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~~~--~~~~----------------------------~~~~~   50 (210)
                      +.+.+++|.-+|.-..||||+++++++-   +|..+....+  -..|                            ...+.
T Consensus        34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~  113 (466)
T KOG0466|consen   34 SRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCD  113 (466)
T ss_pred             hheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcc
Confidence            5567899999999999999999988752   1222111110  0000                            00011


Q ss_pred             ECCE------EEEEEEEeCCCcccccccCcccccCccEEEEEEECCCh----hHHHHHHHHHHHHHhccCCCCcEEEEee
Q 028362           51 AEGT------TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGT  120 (210)
Q Consensus        51 ~~~~------~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~n  120 (210)
                      ..+.      -..+.+.|+||++-.-...-.-..-.|++++++..+.+    ++-+.+     ..++-. .-..++++-|
T Consensus       114 ~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-----aaveiM-~LkhiiilQN  187 (466)
T KOG0466|consen  114 RPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-----AAVEIM-KLKHIIILQN  187 (466)
T ss_pred             cCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-----HHHHHh-hhceEEEEec
Confidence            1111      12456799999875432222122234566666655432    222222     122111 1357888899


Q ss_pred             CcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       121 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |.|+..+....        ...+.++.|.+.-.  ..|++++||.-..||+-+.+.+++++.-+.+
T Consensus       188 KiDli~e~~A~--------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  188 KIDLIKESQAL--------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             hhhhhhHHHHH--------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence            99998765310        11234444444322  2489999999999999999999998876543

>PRK13796 GTPase YqeH; Provisional

Probab=97.77  E-value=5.3e-05  Score=61.86  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++.++|.+|||||||+|+|...
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhh
Confidence            47999999999999999999854

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.00018  Score=59.38  Aligned_cols=22  Identities=23%  Similarity=0.182  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.++|+|+.|+||||++..|..
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999997764

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.00091  Score=50.91  Aligned_cols=163  Identities=17%  Similarity=0.218  Sum_probs=93.7

Q ss_pred             eEEEEECCCCC--CHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEE----EEEEEEeCCCcccccccCcccccCccE
Q 028362            9 IKCVTVGDGAV--GKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT----VNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         9 ~kv~llG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .-++++|-+||  ||.+|+.+|....|.....+.....+ ..-+++++.    +.+.+.-.. .+.+-... ....-..+
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a   81 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQA   81 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeeccc-chhccCCc-ccccceee
Confidence            45789999999  99999999998877544333222221 122233332    233222111 11221111 12233568


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc--------------ccc-----------C----
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH--------------YLA-----------D----  133 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~--------------~~~-----------~----  133 (210)
                      ++.|||++..+.+..+ +.|+.....+.-+ -.+-|+||.|..+..-              +..           .    
T Consensus        82 ~vmvfdlse~s~l~al-qdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDAL-QDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHH-Hhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            9999999999988887 7887654332212 2356789999665411              000           0    


Q ss_pred             -----CCCCCccCHHHHHHHHHHcCCcEEEEeccCC------------CCCHHHHHHHHHH
Q 028362          134 -----HPGLVPVTTAQGEELRKQIGASYYIECSSKT------------QQNVKAVFDAAIK  177 (210)
Q Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~~~~~i~~  177 (210)
                           ..+..-.....+.+|+.++++ .+++.++.+            ..|++.+|.++-.
T Consensus       160 ssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~a  219 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNA  219 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhh
Confidence                 001111233456888999997 889988742            2467888877654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00017  Score=60.99  Aligned_cols=22  Identities=23%  Similarity=0.176  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.++|+|++|+||||++..|..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999988764

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.71  E-value=0.00013  Score=42.40  Aligned_cols=44  Identities=25%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             CccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcc
Q 028362           79 GADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD  123 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D  123 (210)
                      -.++++|++|++...  ++++. ..+...+....++.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            367999999998665  45554 567777777778999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.70  E-value=6.8e-05  Score=56.34  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             EEEEEEEeCCCcccccccCcc------cccCccEEEE---EEEC---CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPL------SYRGADVFVL---AFSL---VSRASYENVLKKWIPELQHYS-PGVPVVLVGTK  121 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~------~~~~~~~~i~---v~d~---~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK  121 (210)
                      +....++|+|||-++-..+..      .++.-+.=+.   ..|.   ++|..+...   ++-.+.... -+.|=|-|+.|
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK  172 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSK  172 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhH
Confidence            445677999999654221111      1222332222   3332   567766543   222222222 47888889999


Q ss_pred             cccccccccc----------------cCCCCCC------ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 028362          122 LDLREDKHYL----------------ADHPGLV------PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       122 ~D~~~~~~~~----------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                      +|+...-...                .+..+..      ..-.+.+..+.+.++...|...+..+.+++-.+...+
T Consensus       173 ~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~I  248 (290)
T KOG1533|consen  173 ADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTI  248 (290)
T ss_pred             hHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHH
Confidence            9986553311                0111100      1223455666666777677666666666666655444

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=0.00013  Score=61.77  Aligned_cols=117  Identities=15%  Similarity=0.067  Sum_probs=75.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC-----CCCC-CCCcee----------eeee-EEEEECCEEEEEEEEeCCCcccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK-----FPTD-YIPTVF----------DNFS-ANVVAEGTTVNLGLWDTAGQEDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~-----~~~~-~~~~~~----------~~~~-~~~~~~~~~~~~~i~D~~G~~~~   69 (210)
                      +.-+|-+.-.-.+||||+-++.+...     +.+- ...+..          .+.. .-....-.++.+.++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            34466777778899999999887321     1000 001111          1110 00111123688899999999999


Q ss_pred             cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .-.....++.-|++++|++....-.-+.. ..|.+.-..   ++|-+...||.|.-..
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry---~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY---NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc---CCCeEEEEehhhhcCC
Confidence            98888899999999999998765444443 456655332   6899999999995444

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.67  E-value=6.2e-05  Score=62.41  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=36.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      .+.|.++|.|||||||+||.|.+.+-.. ...|-..- +..++.+..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTK-HFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTK-HFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcc-eeEEEEcCC---CceecCCCCc
Confidence            5899999999999999999999886322 21222211 222333322   3567999995

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.65  E-value=0.00043  Score=58.14  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             EEEEEeCCCccc-------------ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362           57 NLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKL  122 (210)
Q Consensus        57 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~  122 (210)
                      .+++.|+||...             ..++...+..+.+++|+|+--.+-..-.   ...-..+.... .....|+|++|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER---SnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER---SIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh---hhHHHHHHhcCCCCCeeEEEEeec
Confidence            467899999432             2356667788999999998543222111   12223444444 367889999999


Q ss_pred             ccccccc
Q 028362          123 DLREDKH  129 (210)
Q Consensus       123 D~~~~~~  129 (210)
                      |+...+-
T Consensus       490 DlAEknl  496 (980)
T KOG0447|consen  490 DLAEKNV  496 (980)
T ss_pred             chhhhcc
Confidence            9987753

>PRK13695 putative NTPase; Provisional

Probab=97.64  E-value=0.0014  Score=47.70  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++++|.|++|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.61  E-value=0.00013  Score=60.68  Aligned_cols=114  Identities=16%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC----CCC------CCCCCce-------eeeeeEEEEE----------------CC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP------TDYIPTV-------FDNFSANVVA----------------EG   53 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~----~~~------~~~~~~~-------~~~~~~~~~~----------------~~   53 (210)
                      ++..|+++|.+|+||||++..+...    ...      +.+.+..       .......+..                .-
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            4568899999999999999877631    110      1111110       0000000000                00


Q ss_pred             EEEEEEEEeCCCcccccccC------cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLR------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRE  126 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D~~~  126 (210)
                      ..+.+.++||+|........      ......++.+++|+|.+......    .....+..   .+++ -+|+||.|...
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av----~~a~~F~~---~l~i~gvIlTKlD~~a  246 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAK----NQAKAFHE---AVGIGGIIITKLDGTA  246 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHH----HHHHHHHh---cCCCCEEEEecccCCC
Confidence            22478899999975432110      01133578899999987653221    12222222   2333 47789999854


Q ss_pred             c
Q 028362          127 D  127 (210)
Q Consensus       127 ~  127 (210)
                      .
T Consensus       247 ~  247 (437)
T PRK00771        247 K  247 (437)
T ss_pred             c
Confidence            4

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.59  E-value=0.0003  Score=49.38  Aligned_cols=108  Identities=15%  Similarity=0.031  Sum_probs=62.4

Q ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCC
Q 028362           12 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS   91 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   91 (210)
                      +.-|.+|+||||+.-.+...-- .....+...+...  ......+.+.++|+|+...  ......+..+|.++++.+.+ 
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~--~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL--GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC--CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-
Confidence            3557899999998765553211 1111111111110  0011127889999997532  22235688899999998874 


Q ss_pred             hhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           92 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        92 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      ..++... ...++.+.......++.+|.|+.+...
T Consensus        78 ~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~~  111 (139)
T cd02038          78 PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESPK  111 (139)
T ss_pred             hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence            5555554 344455544434567889999987543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.58  E-value=0.00036  Score=61.49  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|+.||||||.+..+..
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            578999999999999998874

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.56  E-value=0.00048  Score=50.47  Aligned_cols=68  Identities=19%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             EEEEEEeCCCccccccc--Cccc---ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           56 VNLGLWDTAGQEDYNRL--RPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ....+++++|...-..+  ....   .-..+.+|.|+|..+-.........+...+....     ++|+||+|+.+..
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~  157 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE  157 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh
Confidence            45666788885433322  0000   1235789999999665444444345556665544     7788999997653

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.53  E-value=0.00024  Score=59.67  Aligned_cols=21  Identities=24%  Similarity=0.234  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|+.||||||++..|..
T Consensus       258 Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        258 VFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            588999999999999998874

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.0012  Score=54.22  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-.|+++|++||||||.+..+..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999987763

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.52  E-value=7.2e-05  Score=54.76  Aligned_cols=23  Identities=13%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .||+|+|+||+||||+.++|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999976

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.49  E-value=9.1e-05  Score=50.47  Aligned_cols=22  Identities=14%  Similarity=0.167  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.49  E-value=0.00085  Score=50.62  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             EEEEEEeCC-CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           56 VNLGLWDTA-GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        56 ~~~~i~D~~-G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      +.+.+.||- |.+.|.   ....+++|.+|.|+|.+ ..++..+ ++..+...... -.++.+|+||.|..
T Consensus       134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~ta-eri~~L~~elg-~k~i~~V~NKv~e~  198 (255)
T COG3640         134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTA-ERIKELAEELG-IKRIFVVLNKVDEE  198 (255)
T ss_pred             CcEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHH-HHHHHHHHHhC-CceEEEEEeeccch
Confidence            455666764 444443   33467899999999986 4455554 44444433322 37899999999975

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.48  E-value=0.00093  Score=48.59  Aligned_cols=67  Identities=15%  Similarity=0.052  Sum_probs=37.7

Q ss_pred             EEEEEEEeCCCcccccccC----ccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           55 TVNLGLWDTAGQEDYNRLR----PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .+.+.++|++|...+....    ..+  ....+.+++|+|.....+..    .+...+.....  ..-+|.||.|....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~----~~~~~~~~~~~--~~~viltk~D~~~~  154 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV----NQAKAFNEALG--ITGVILTKLDGDAR  154 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH----HHHHHHHhhCC--CCEEEEECCcCCCC
Confidence            4567889999974321110    111  12488999999986554332    22223322222  24577799998654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK08118 topology modulation protein; Reviewed

Probab=97.48  E-value=0.00011  Score=53.35  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      ||+|+|++|+|||||.+.+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999998854

>TIGR00959 ffh signal recognition particle protein

Probab=97.47  E-value=0.00062  Score=56.59  Aligned_cols=85  Identities=16%  Similarity=0.073  Sum_probs=46.5

Q ss_pred             EEEEEEEEeCCCccccccc-Ccc-----cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRL-RPL-----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~-~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ..+.+.++||+|....... ...     ..-..+.+++|+|........    .+...+.... + ..=+|.||.|....
T Consensus       181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~----~~a~~f~~~v-~-i~giIlTKlD~~~~  254 (428)
T TIGR00959       181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAV----NTAKTFNERL-G-LTGVVLTKLDGDAR  254 (428)
T ss_pred             cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHH----HHHHHHHhhC-C-CCEEEEeCccCccc
Confidence            3467899999996433210 000     122467889999987554332    2223333211 1 22477899997543


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      ..              .+...+...+. |+..
T Consensus       255 ~G--------------~~lsi~~~~~~-PI~f  271 (428)
T TIGR00959       255 GG--------------AALSVRSVTGK-PIKF  271 (428)
T ss_pred             cc--------------HHHHHHHHHCc-CEEE
Confidence            21              25666666665 4443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.46  E-value=9.5e-05  Score=60.00  Aligned_cols=116  Identities=17%  Similarity=0.061  Sum_probs=80.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc--C------CCCCCCCCce--------eeee-eEEEEECCEEEEEEEEeCCCccccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS--N------KFPTDYIPTV--------FDNF-SANVVAEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~--~------~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~   70 (210)
                      .-+|.++....+||||.-.|+..  +      ..+....-|.        +.++ +.-+..+=+++.+.++|+||+-+|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            34678889999999999998872  1      1111111110        1111 1123344566888899999999999


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      -....+++--|+++.|+|.+-.-..+.+ ..|.+.=   ..++|-....||+|....
T Consensus       117 leverclrvldgavav~dasagve~qtl-tvwrqad---k~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQAD---KFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCccccee-eeehhcc---ccCCchhhhhhhhhhhhh
Confidence            9999999999999999999876555554 4565431   247899999999998665

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.45  E-value=0.00085  Score=53.75  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .=.+|.|.-|+|||||+|++...
T Consensus         5 pv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhc
Confidence            34578899999999999999854

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.44  E-value=0.00024  Score=51.57  Aligned_cols=52  Identities=21%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT   63 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   63 (210)
                      +|+|.|++|+|||||++++....-... .+ ..-.++.....++..+-|.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~-v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKG-LP-VGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTC-GG-EEEEEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccC-Cc-cceEEeecccCCCceEEEEEEEC
Confidence            689999999999999999885421111 11 12223444455666667777777

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.41  E-value=0.00069  Score=47.04  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      --+++.|++|+|||++++.+.....
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhh
Confidence            4689999999999999999987643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07261 topology modulation protein; Provisional

Probab=97.41  E-value=0.00015  Score=52.86  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      ||+|+|++|+|||||.+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998743

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.40  E-value=0.00017  Score=58.07  Aligned_cols=57  Identities=21%  Similarity=0.295  Sum_probs=38.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      +..+++.|+|.|+|||||+||.|..... .-...|...... ..+. -+.  .+.+.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~sm-qeV~-Ldk--~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSM-QEVK-LDK--KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhh-hhee-ccC--CceeccCCce
Confidence            5789999999999999999999998764 333334332211 1122 222  4566999994

>PRK10867 signal recognition particle protein; Provisional

Probab=97.38  E-value=0.00044  Score=57.47  Aligned_cols=67  Identities=18%  Similarity=0.174  Sum_probs=36.7

Q ss_pred             EEEEEEEEeCCCcccccc-cCc---c--cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCccccc
Q 028362           54 TTVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE  126 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~-~~~---~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~  126 (210)
                      ..+.+.++||+|.-.... ...   .  ..-..+.+++|.|........+.    ...+..   .++ .-+|.||.|...
T Consensus       182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~----a~~F~~---~~~i~giIlTKlD~~~  254 (433)
T PRK10867        182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNT----AKAFNE---ALGLTGVILTKLDGDA  254 (433)
T ss_pred             cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHH----HHHHHh---hCCCCEEEEeCccCcc
Confidence            347789999999643211 000   0  01246677999998765433222    223322   122 246779999754


Q ss_pred             c
Q 028362          127 D  127 (210)
Q Consensus       127 ~  127 (210)
                      .
T Consensus       255 r  255 (433)
T PRK10867        255 R  255 (433)
T ss_pred             c
Confidence            3

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.37  E-value=0.0049  Score=49.41  Aligned_cols=76  Identities=16%  Similarity=0.087  Sum_probs=43.0

Q ss_pred             CccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-CcE
Q 028362           79 GADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASY  156 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  156 (210)
                      ..|+++-|+|+..-..... ..+.....+....     +||+||+|+....            ..+..+...++++ ..+
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD-----~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~  178 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD-----VIVLNKTDLVDAE------------ELEALEARLRKLNPRAR  178 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc-----EEEEecccCCCHH------------HHHHHHHHHHHhCCCCe
Confidence            3578899999865443222 2233344444433     7889999997653            2444455555554 236


Q ss_pred             EEEeccCCCCCHHHHH
Q 028362          157 YIECSSKTQQNVKAVF  172 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~  172 (210)
                      ++.+|. .+....+++
T Consensus       179 i~~~~~-~~~~~~~ll  193 (323)
T COG0523         179 IIETSY-GDVDLAELL  193 (323)
T ss_pred             EEEccc-cCCCHHHhh
Confidence            666666 334444444

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.34  E-value=0.00025  Score=42.25  Aligned_cols=21  Identities=19%  Similarity=0.317  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -.+|.|+.|+|||||+.++.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998874

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00017  Score=55.07  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=56.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE--EEEEEEEeCCCcccccccCccccc--Cc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYR--GA   80 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~--~~   80 (210)
                      .+.+.-|++.|..  |+||+|++...+.- ....|+....|++.....+.  .-...+|+++|-.....+..--+.  +.
T Consensus        42 ~~~E~~I~~~Gn~--~~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNG--GKTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCC--ceeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            3456778888887  55999999987653 33367777777665444432  234567999997655433222222  11


Q ss_pred             --cEEEEEEECCChhHHH
Q 028362           81 --DVFVLAFSLVSRASYE   96 (210)
Q Consensus        81 --~~~i~v~d~~~~~s~~   96 (210)
                        =++|++.|++++..+.
T Consensus       119 ~~~slIL~LDls~p~~~W  136 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLW  136 (363)
T ss_pred             hhhhheeeeecCChHHHH
Confidence              1678899999986443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.00047  Score=56.06  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .--++++|+.||||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999998873

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.30  E-value=0.00054  Score=53.67  Aligned_cols=60  Identities=20%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ..++++.|+|-||||||+|+|.+........      ..|.........+.+-... .+.+.|+||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence            4568999999999999999998875433221      1222222222223332222 2567999995

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.28  E-value=0.0002  Score=50.19  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+++|++|+||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998843

...

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.00074  Score=56.25  Aligned_cols=112  Identities=15%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC------------CCCCCCCc--eeeeeeEE-----------------EEECCEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK------------FPTDYIPT--VFDNFSAN-----------------VVAEGTTVN   57 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~------------~~~~~~~~--~~~~~~~~-----------------~~~~~~~~~   57 (210)
                      -++.++..-..|||||-..|+...            |.+.....  .+.++..+                 -.-++.++.
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            356788888999999999888421            11110000  01111100                 001346688


Q ss_pred             EEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362           58 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  124 (210)
Q Consensus        58 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~  124 (210)
                      +.++|.||+-+|.+.....++--|+.+.|+|..+.--.+.- ..+.+.+..   .+.-+++.||.|.
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DR  162 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDR  162 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhH
Confidence            89999999999999999999999999999999876554442 334444443   3444667899995

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.25  E-value=0.0026  Score=53.04  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=53.6

Q ss_pred             EEEEEEEeCCCccccc----ccCccccc---CccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           55 TVNLGLWDTAGQEDYN----RLRPLSYR---GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      .+.+.++|++|.....    .....++.   ...-.++|++.+-. ..+..+    ...+...   -+--+|+||.|...
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~----~~~f~~~---~~~~vI~TKlDet~  371 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI----YKHFSRL---PLDGLIFTKLDETS  371 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH----HHHhCCC---CCCEEEEecccccc
Confidence            4678999999975432    11111222   23456777887543 333332    2233221   12257899999954


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH-HHHH----HHHHHHHhC
Q 028362          127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAVF----DAAIKVVIK  181 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~~~----~~i~~~~~~  181 (210)
                      .              .-.+..+....+. |...+  .+|.++ +++.    ..+++.++.
T Consensus       372 ~--------------~G~i~~~~~~~~l-Pv~yi--t~Gq~VpdDl~~a~~~~l~~~ll~  414 (424)
T PRK05703        372 S--------------LGSILSLLIESGL-PISYL--TNGQRVPDDIKVANPEELVRLLLG  414 (424)
T ss_pred             c--------------ccHHHHHHHHHCC-CEEEE--eCCCCChhhhhhCCHHHHHHHHhc
Confidence            3              2245666667776 43333  245554 3333    344555554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.24  E-value=0.00085  Score=48.89  Aligned_cols=45  Identities=18%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |++++|+|+.++.+-.+  ..+.+.+.....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            68999999987643221  2333332111246899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.23  E-value=0.0016  Score=43.07  Aligned_cols=82  Identities=13%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             EEEEC-CCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           11 CVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        11 v~llG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      |++.| ..|+||||+...+....-. ...+....+.       +..+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~-------d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDL-------DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeC-------CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56666 5789999998765532211 1122221111       111778999999864322  22567789999999876


Q ss_pred             CChhHHHHHHHHHHH
Q 028362           90 VSRASYENVLKKWIP  104 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~  104 (210)
                       +..++... ..+++
T Consensus        72 -~~~s~~~~-~~~~~   84 (104)
T cd02042          72 -SPLDLDGL-EKLLE   84 (104)
T ss_pred             -CHHHHHHH-HHHHH
Confidence             45566555 44444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.22  E-value=0.0022  Score=41.31  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=43.5

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-CcccccCccEEEEEEEC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFSL   89 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~   89 (210)
                      +++.|.+|+||||+...+....-... .+        ...++    .+.++|+++....... .......++.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~--------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KR--------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-Ce--------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            67889999999999987775421111 11        11222    6788999987543221 13456678888888876


Q ss_pred             CCh
Q 028362           90 VSR   92 (210)
Q Consensus        90 ~~~   92 (210)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            533

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.22  E-value=0.00039  Score=42.55  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.21  E-value=0.00021  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.422  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999965

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.20  E-value=0.00037  Score=51.45  Aligned_cols=23  Identities=9%  Similarity=0.092  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .=|+|+|++|||||||+++|...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999864

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.17  E-value=0.00048  Score=50.07  Aligned_cols=26  Identities=15%  Similarity=0.049  Sum_probs=22.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+..-+.|+|.+|+|||||++++...
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHH
Confidence            34557899999999999999999865

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.00035  Score=53.18  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+|++|||||||++.+.+=
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999877653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.16  E-value=0.00052  Score=51.58  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=23.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+...|.|.|++|||||||++.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999988864

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.16  E-value=0.00053  Score=51.50  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+..-|+|+|++|||||||++.|...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45567889999999999999999754

>TIGR00235 udk uridine kinase

Probab=97.15  E-value=0.00054  Score=51.43  Aligned_cols=29  Identities=17%  Similarity=0.027  Sum_probs=24.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      |..++..-|+|.|++|+|||||++.+.+.
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            34566678999999999999999998853

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.00079  Score=61.90  Aligned_cols=112  Identities=25%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCCC--CC----CCCceeeeeeEEEEECCEEEEEEEEeCCCccc--------ccccCccc
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKFP--TD----YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS   76 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   76 (210)
                      .+|+|++|+||||++..- +..|+  +.    .....+ +..-...+.+   .-+++||.|...        -...|..+
T Consensus       128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence            479999999999999532 22221  10    000111 0000111111   235689888321        12334322


Q ss_pred             ---------ccCccEEEEEEECCCh-----hHHHHH---HHHHHHHHhc-cCCCCcEEEEeeCcccccc
Q 028362           77 ---------YRGADVFVLAFSLVSR-----ASYENV---LKKWIPELQH-YSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        77 ---------~~~~~~~i~v~d~~~~-----~s~~~~---~~~~~~~~~~-~~~~~piilv~nK~D~~~~  127 (210)
                               .+-.+++|+..|+++-     ..-...   +..-++++.. ..-..|+.+++||.|+..-
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                     3347899999999642     211111   1222333332 2358999999999999764

>PRK06217 hypothetical protein; Validated

Probab=97.08  E-value=0.00053  Score=50.44  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+|+|+|.+|+||||+.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999854

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.08  E-value=0.00049  Score=52.02  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|||||||+|-+..-
T Consensus        34 vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          34 VAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            689999999999999887754

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.07  E-value=0.0021  Score=50.19  Aligned_cols=112  Identities=22%  Similarity=0.133  Sum_probs=59.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC---------CCCCC--------ceeeeeeEEEEE---------------CCEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP---------TDYIP--------TVFDNFSANVVA---------------EGTTV   56 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~---------~~~~~--------~~~~~~~~~~~~---------------~~~~~   56 (210)
                      -+++++|++|+||||++..+......         .....        +...........               ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999877532110         00000        000000011111               11246


Q ss_pred             EEEEEeCCCcccccc-c---Ccccc--cCccEEEEEEECCC-hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           57 NLGLWDTAGQEDYNR-L---RPLSY--RGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        57 ~~~i~D~~G~~~~~~-~---~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      .+.++|++|...... .   +..++  ...+-.++|.|++. .....+    ++..+..   -.+--+|+||.|....
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~----~~~~f~~---~~~~~~I~TKlDet~~  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE----IITNFKD---IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH----HHHHhCC---CCCCEEEEEeecCCCC
Confidence            889999999764321 1   11111  23456789999863 333332    2233332   1233477899998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.06  E-value=0.00054  Score=51.11  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+..=
T Consensus        30 vv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5789999999999999877643

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.05  E-value=0.00049  Score=47.10  Aligned_cols=21  Identities=19%  Similarity=0.063  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988865

...

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.03  E-value=0.00073  Score=51.55  Aligned_cols=25  Identities=24%  Similarity=0.234  Sum_probs=21.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...+||+|+|+|||||||+..+|..
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998874

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0011  Score=53.73  Aligned_cols=164  Identities=15%  Similarity=0.099  Sum_probs=92.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------CC----CCce------eeeeeE-EEEECC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------DY----IPTV------FDNFSA-NVVAEG   53 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------~~----~~~~------~~~~~~-~~~~~~   53 (210)
                      ..+.+++++++|.-.+||||+-..+...  ..+.                 -|    ..+.      +.+... ....+-
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            3467899999999999999998765521  0000                 00    0000      011111 111222


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHHH--HHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ..-.|++.|.||+..|......-...||..++|+++-..+   .|+.-  ... ...+..-..-...|++.||.|-+..+
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lakt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHHhhccceEEEEEEeccCCccC
Confidence            3456889999999998776666677889999998874322   11110  001 11111111345778899999986553


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcC-----CcEEEEeccCCCCCHHHHH
Q 028362          129 HYLADHPGLVPVTTAQGEELRKQIG-----ASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~  172 (210)
                      .    ..+......+....+...++     ...|+++|..+|.++++.-
T Consensus       234 W----s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  234 W----SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             c----chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            2    00111123344444544433     2468899999999998754

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.03  E-value=0.00037  Score=50.70  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .=++|.||+|||||||++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            347899999999999999999664

>PRK03839 putative kinase; Provisional

Probab=97.03  E-value=0.00064  Score=49.80  Aligned_cols=22  Identities=23%  Similarity=0.222  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      +|+|+|.+|+||||+.+++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.01  E-value=0.00065  Score=47.56  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14530 adenylate kinase; Provisional

Probab=97.01  E-value=0.00065  Score=51.32  Aligned_cols=21  Identities=14%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|+|+|||||||+.+.|..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999998874

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.99  E-value=0.00066  Score=50.06  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999654

>PLN02674 adenylate kinase

Probab=96.98  E-value=0.00066  Score=52.13  Aligned_cols=27  Identities=15%  Similarity=0.090  Sum_probs=23.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+...+|+|+|+||+||+|+..++..
T Consensus        27 ~~~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         27 SSKPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             ccccCceEEEECCCCCCHHHHHHHHHH
Confidence            345568999999999999999998875

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.97  E-value=0.00073  Score=46.45  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999888653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.96  E-value=0.0007  Score=49.49  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.95  E-value=0.00075  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.031  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      --|+++|++||||||+++++..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999983

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.94  E-value=0.0011  Score=45.55  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP   34 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~   34 (210)
                      -.++|+|++|+||||++..+......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08233 hypothetical protein; Provisional

Probab=96.93  E-value=0.001  Score=48.64  Aligned_cols=24  Identities=17%  Similarity=-0.015  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-|+|.|.+|+|||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467889999999999999999854

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.0021  Score=47.99  Aligned_cols=20  Identities=25%  Similarity=0.587  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      .+++||+|+|||||++.|..
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            47999999999999987764

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.92  E-value=0.00079  Score=48.41  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      .+|+|.|.||+||||++++|.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH
Confidence            379999999999999999998

>PRK07429 phosphoribulokinase; Provisional

Probab=96.90  E-value=0.0013  Score=52.92  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |.+...+.+-|.|.|++|+|||||++.+..
T Consensus         1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~   30 (327)
T PRK07429          1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLAD   30 (327)
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHh
Confidence            666667889999999999999999998884

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.90  E-value=0.00082  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999998777553

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.89  E-value=0.00093  Score=48.85  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14532 adenylate kinase; Provisional

Probab=96.89  E-value=0.00095  Score=49.22  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+++|+||+||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999974

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.88  E-value=0.001  Score=50.92  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +..+|++|+|.+|+|||+|+..+...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45689999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.88  E-value=0.00089  Score=47.07  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .|.|+|+.|+|||||+..|.+..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999988653

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.88  E-value=0.00096  Score=44.42  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      .++|+|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=96.87  E-value=0.022  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      .+|.|.-|+|||||++++...
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578899999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.86  E-value=0.005  Score=41.03  Aligned_cols=99  Identities=15%  Similarity=0.069  Sum_probs=56.2

Q ss_pred             ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh
Q 028362           14 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA   93 (210)
Q Consensus        14 lG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~   93 (210)
                      =+..|+||||+.-.+...--......+.-.+....     ....+.++|+|+.....  ....+..+|.++++.+. +..
T Consensus         6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~-~~~   77 (106)
T cd03111           6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----FGDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQQ-DLP   77 (106)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----CCCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEecC-ChH
Confidence            35578999998776553211110112111111000     01167889999864332  23356789999998876 455


Q ss_pred             HHHHHHHHHHHHHhccC-C-CCcEEEEeeC
Q 028362           94 SYENVLKKWIPELQHYS-P-GVPVVLVGTK  121 (210)
Q Consensus        94 s~~~~~~~~~~~~~~~~-~-~~piilv~nK  121 (210)
                      ++..+ ..+++.++... + ...+.+|+|+
T Consensus        78 s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNA-KRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence            56665 56666666554 3 4567777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK13949 shikimate kinase; Provisional

Probab=96.85  E-value=0.0011  Score=48.08  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|+|++|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998774

>PRK14531 adenylate kinase; Provisional

Probab=96.85  E-value=0.0011  Score=48.70  Aligned_cols=23  Identities=13%  Similarity=0.131  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+|+++|+||+||||+..++...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988743

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.85  E-value=0.00093  Score=49.38  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      +|+|+|++|+||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998854

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.81  E-value=0.0011  Score=48.51  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+++|+|||||||+..++...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988753

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.80  E-value=0.0014  Score=48.23  Aligned_cols=22  Identities=14%  Similarity=0.276  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .|++|+|++|+||||++..+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998874

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.80  E-value=0.0011  Score=49.34  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |.|.|++|+|||||++.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.80  E-value=0.0013  Score=48.16  Aligned_cols=20  Identities=20%  Similarity=0.155  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      .++|+|+.|+|||||++.+.
T Consensus        23 ~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.0012  Score=53.05  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      ++++|++|||||||++.+.+
T Consensus        32 ~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999987774

>TIGR01351 adk adenylate kinases

Probab=96.78  E-value=0.0011  Score=49.84  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      ||+|+|+||+||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.78  E-value=0.0012  Score=50.93  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      ++|+|+.|+|||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57999999999999998886

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=96.77  E-value=0.12  Score=37.40  Aligned_cols=142  Identities=11%  Similarity=0.058  Sum_probs=85.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      .......|+++|..+.++..|..++....-.          +...+..-.        -.|=-.+...    .=...|.+
T Consensus        11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~l~Vh~a~--------sLPLp~e~~~----lRprIDlI   68 (176)
T PF11111_consen   11 PELNTATILLVGTEEALLQQLAEAMLEEDKE----------FKLKVHLAK--------SLPLPSENNN----LRPRIDLI   68 (176)
T ss_pred             CCcceeEEEEecccHHHHHHHHHHHHhhccc----------eeEEEEEec--------cCCCcccccC----CCceeEEE
Confidence            3445679999999999999999999853210          111111000        0000001111    12247899


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|++|....-++..+ +.-+..+.....--.+.++++-........          +...+..+++..|+. |++...-.
T Consensus        69 VFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le  136 (176)
T PF11111_consen   69 VFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLE  136 (176)
T ss_pred             EEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeecc
Confidence            999999999999887 454444443332233444454444433222          788999999999996 77777666


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIKVV  179 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~  179 (210)
                      +.++...+=+.+.+.+
T Consensus       137 ~~~~~~~lAqRLL~~l  152 (176)
T PF11111_consen  137 NEEGRTSLAQRLLRML  152 (176)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            6666655555555544

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PLN02200 adenylate kinase family protein

Probab=96.77  E-value=0.0018  Score=49.58  Aligned_cols=24  Identities=13%  Similarity=0.011  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+.|+|+|+||+||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998874

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.76  E-value=0.0012  Score=46.21  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+|++|+|||+|++.+...
T Consensus         2 vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            799999999999999988743

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.76  E-value=0.0014  Score=47.75  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      +++|+|++|+|||||+|-+.+=.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHhcc
Confidence            68999999999999999877533

>PRK00625 shikimate kinase; Provisional

Probab=96.75  E-value=0.0015  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      +|+++|.+||||||+.+.+...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988643

>PHA00729 NTP-binding motif containing protein

Probab=96.73  E-value=0.002  Score=48.81  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...+|+|.|+||+|||||+.++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999998764

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.0012  Score=46.41  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=22.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..-.+|+|.|.||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            3457999999999999999999983

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.71  E-value=0.0015  Score=49.45  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|+|+|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            378999999999999988776

>PRK14527 adenylate kinase; Provisional

Probab=96.69  E-value=0.0021  Score=47.64  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.--|+++|+||+||||+..++..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998874

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.69  E-value=0.0015  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|+|++|+|||||++.+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            45899999999999999988864

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.68  E-value=0.0021  Score=52.11  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc-
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD-   81 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~-   81 (210)
                      ++.++.|-|.++|.|++|||++||.|-..+...- .|-.+.+-.-.+..--+.+.+  +|+||.         .+..+| 
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmkrIfL--IDcPGv---------Vyps~ds  369 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMKRIFL--IDCPGV---------VYPSSDS  369 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHhceeE--ecCCCc---------cCCCCCc


Q ss_pred             -------EEEEEEECCChhHH
Q 028362           82 -------VFVLAFSLVSRASY   95 (210)
Q Consensus        82 -------~~i~v~d~~~~~s~   95 (210)
                             +++=|=.+.+++.+
T Consensus       370 et~ivLkGvVRVenv~~pe~y  390 (572)
T KOG2423|consen  370 ETDIVLKGVVRVENVKNPEDY  390 (572)
T ss_pred             hHHHHhhceeeeeecCCHHHH

>PRK01889 GTPase RsgA; Reviewed

Probab=96.67  E-value=0.0017  Score=52.92  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      +++++|.+|+|||||+|.+.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            78999999999999999998643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.66  E-value=0.0018  Score=47.46  Aligned_cols=23  Identities=22%  Similarity=0.188  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999998877643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14529 adenylate kinase; Provisional

Probab=96.64  E-value=0.0019  Score=49.04  Aligned_cols=22  Identities=14%  Similarity=0.137  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++|+|+|+||+||||+.+++..
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~   22 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKK   22 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988874

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.64  E-value=0.0016  Score=49.44  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |.|.|++|||||||++.+...
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            678999999999999988854

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.63  E-value=0.0018  Score=47.76  Aligned_cols=21  Identities=29%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|+++|++|+|||||+|-+.+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            478999999999999997764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.62  E-value=0.002  Score=48.63  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4689999999999999888764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.62  E-value=0.0021  Score=47.44  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|+|++|+||||+++.+.+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.59  E-value=0.0022  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999988864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.59  E-value=0.0018  Score=44.58  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      =++|.|++|+|||++++++...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            3689999999999999999865

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.59  E-value=0.0022  Score=48.41  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999999888864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	210
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-87
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-85
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-85
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-82
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-59
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-59
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-59
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-59
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-59
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-59
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-59
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-59
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-59
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-58
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-58
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-58
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-58
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-58
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-58
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-58
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-58
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-58
1mh1_A	186	Small G-Protein Length = 186		3e-58
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-58
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-58
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-58
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-58
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-58
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-58
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-58
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-58
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-57
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-56
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-51
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		7e-51
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-51
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		9e-51
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-50
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-50
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-50
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-50
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-50
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-50
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-50
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-50
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-50
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-50
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-50
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-50
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-50
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-50
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-50
2kb0_A	178	Cdc42(T35a) Length = 178		5e-50
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		6e-50
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		8e-50
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		9e-50
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-49
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-47
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-46
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-46
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-46
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-46
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-46
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-46
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-46
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-46
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-46
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		4e-46
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-46
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-46
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		5e-46
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-46
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-46
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-45
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-45
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-45
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-45
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		9e-45
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-41
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-37
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-37
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-31
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		2e-31
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-31
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-28
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-28
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-20
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-19
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-19
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-19
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-19
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-19
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		9e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		9e-19
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-18
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-18
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-18
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-18
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-18
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-18
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-18
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-18
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-18
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		4e-18
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-18
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		5e-18
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		6e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-18
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		8e-18
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		9e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-17
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-17
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-17
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-17
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-17
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-17
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-17
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-17
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-17
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-17
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-17
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		4e-17
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		5e-17
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		7e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		7e-17
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		8e-17
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		9e-17
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-17
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		9e-17
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		9e-17
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		1e-16
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-16
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-16
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-16
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-16
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-16
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-16
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-16
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-16
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		6e-16
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		6e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		7e-16
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		9e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		9e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-15
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-15
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-15
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-15
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-15
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-15
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-15
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-15
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		6e-15
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		6e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		7e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-15
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		7e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		7e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		7e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		7e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		8e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		8e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-14
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-14
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-14
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-14
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-14
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-14
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-14
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-14
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-14
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-14
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-14
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-14
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-14
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-14
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-14
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-14
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-14
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-14
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-14
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		4e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		6e-14
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-14
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-14
1vg1_A	185	Gdp-bound Rab7 Length = 185		8e-14
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		8e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		8e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		8e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-13
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-13
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-13
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-13
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-13
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-13
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-13
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-13
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-13
1byu_A	216	Canine Gdp-Ran Length = 216		1e-12
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-12
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-12
3icq_B	171	Karyopherin Nuclear State Length = 171		8e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		9e-12
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		9e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-11
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		5e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		6e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		8e-11
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		5e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		7e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-10
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-09
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-09
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-09
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		7e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		8e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-05
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-04
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		8e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  316 bits (810), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 159/172 (92%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVV +G TVNLGLWDT
Sbjct: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDT 61
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+DK +  DHPG VP+TT QGEEL+K IG+  YIECSSKTQQNVKAVFDAA
Sbjct: 122 LRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  311 bits (797), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 157/172 (91%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLWDT
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDT 63
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLD
Sbjct: 64  AGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAA
Sbjct: 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  309 bits (791), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 157/172 (91%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S +RFIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANVV +G+TVNLGLWDT
Sbjct: 2   STARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLD
Sbjct: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLD 121
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+DK +L DHPG   +TTAQGEELRK IGA  Y+ECSSKTQQNVKAVFD A
Sbjct: 122 LRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/172 (81%), Positives = 157/172 (91%), Gaps = 2/172 (1%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S S+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWDT
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTKLD
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+DK YLADH  +  +T+ QGEELRKQIGA+ YIECSSKTQQNVKAVFD A
Sbjct: 125 LRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/176 (60%), Positives = 132/176 (75%), Gaps = 2/176 (1%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            SS  + IKCV VGDGAVGK C+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLW
Sbjct: 4   GSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 63
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 123
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 179

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  225 bits (573), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 191

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N  P +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 131/176 (74%), Gaps = 2/176 (1%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            S   + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLW
Sbjct: 1   GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLW 60
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 61  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 120
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 176

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 128/169 (75%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 175

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  221 bits (563), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/173 (60%), Positives = 131/173 (75%), Gaps = 2/173 (1%)
Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
           + + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
           GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121
Query: 125 REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 129/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N F  +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 182

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 130/175 (74%), Gaps = 2/175 (1%)
Query: 3   SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
            +A   IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
           TAG EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269
Query: 123 DLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           DLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 131/177 (74%), Gaps = 2/177 (1%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           +  +A   IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGL
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAG EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGT
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267
Query: 121 KLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           KLDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  221 bits (562), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 104/177 (58%), Positives = 131/177 (74%), Gaps = 2/177 (1%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           +  +A   IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGL
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAG EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGT
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267
Query: 121 KLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           KLDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  220 bits (560), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 125 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 130/176 (73%), Gaps = 2/176 (1%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            S  S+ IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +   VNLGLW
Sbjct: 3   GSGGSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLW 62
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDY+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTK
Sbjct: 63  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LDLR+DK  +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 123 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 178

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 130/169 (76%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 DTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  217 bits (553), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/169 (61%), Positives = 127/169 (75%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGD AVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTKLDLR+DK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 179

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/188 (57%), Positives = 133/188 (70%), Gaps = 21/188 (11%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 69  YNRLRPLSY--------------RG-----ADVFVLAFSLVSRASYENVLKKWIPELQHY 109
           Y+RLRPLSY              RG     ADVF++ FSLVS AS+ENV  KW PE++H+
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 110 SPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 167
            P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 168 VKAVFDAA 175
           +K VFD A
Sbjct: 186 LKTVFDEA 193

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 95/175 (54%), Positives = 128/175 (73%), Gaps = 4/175 (2%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SA + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DT
Sbjct: 6   SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D      LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 126 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 125/173 (72%), Gaps = 2/173 (1%)
Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
            S+ IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
           GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 125 REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           R+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 127/177 (71%), Gaps = 4/177 (2%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            SS  + IKCV VGDGAVGK C+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+
Sbjct: 4   GSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF 63
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT+
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 123
Query: 122 LDLREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           +DLR+D      LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 IDLRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  196 bits (497), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 125 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 4/175 (2%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D      LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 121 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 4/175 (2%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D      LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 134 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 182

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 127/175 (72%), Gaps = 4/175 (2%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S  + IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 124 LREDK---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D      LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 125/170 (73%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 126 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 123/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 124/170 (72%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V   G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 127/170 (74%), Gaps = 2/170 (1%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE 67
            +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           DY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DLR+D
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 128 KHYLADHPGL--VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              LA    +   P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+P VFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  193 bits (490), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NK P++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  192 bits (489), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  192 bits (489), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGD AVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  192 bits (488), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 124/170 (72%), Gaps = 4/170 (2%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 129 ---HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
                LA +    P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 128 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V  +G  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +++LRPL Y   D+F+L FS+VS +S++NV +KW+PE++ + P  P++LVGT+ DLRED 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 129 HYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             L   D     PV     + L ++I A+ YIECS+ TQ+N+K VFDAA
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           SA+   K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 124 LREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 178

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 69  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 128
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 129 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/176 (48%), Positives = 120/176 (68%), Gaps = 2/176 (1%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            S A+   K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LW
Sbjct: 1   GSMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALW 60
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 122 LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 119/168 (70%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 118/168 (70%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+H
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  180 bits (456), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 83/168 (49%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  179 bits (453), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD A GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 68  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 127
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 128 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD A GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +R RPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 67  DRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 126
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV  A+G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 127 TARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K DLR D+H
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+H
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 130 YLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
              +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  176 bits (446), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDGA GKTC+LI  +  +FP  Y+PTVF+N+ A+V  +G  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           +RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVP++LVG K+DLR D  
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
            +      G  PVT+ +G+ +  QIGA+ Y ECS+KT   V+ VF+AA
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAA 179

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           A    R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+  +G  V+L +W
Sbjct: 28  APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIW 87
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VP+++VG K
Sbjct: 88  DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 122 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
            DLR+DK  +      GL PVT  +G+E+ + +GA  Y+ECS++   NV AVF  A
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 111/172 (64%), Gaps = 8/172 (4%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           +  + +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +  +     L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K+D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D        G   VT  +G++L +++G   YIE SS  +  +  VF+ +
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 181

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 111/172 (64%), Gaps = 8/172 (4%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           +  + +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +  +     L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LR+D        G   VT  +G++L +++G   YIE SS  +  +  VF+ +
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 5/172 (2%)
Query: 9   IKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G 
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 81
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
             Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR 
Sbjct: 82  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 141
Query: 127 DKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 175
           D   L +  +    PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 108/176 (61%), Gaps = 5/176 (2%)
Query: 5   ASRFIKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
           +++ +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
           T+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K 
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 123 DLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 175
           DLR D   L +  +    PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 5/172 (2%)
Query: 9   IKC--VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           +KC  V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 86
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
             Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146
Query: 127 DKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 175
           D   L +  +    PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 175
            L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 181

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 175
            L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 96/169 (56%), Gaps = 3/169 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
           + +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 130 YLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 175
            L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 180

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 18/180 (10%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
            S  S  +K + +GDG VGK+ ++  Y +NKF +    T+   F + ++  +G  V L +
Sbjct: 1   GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPV 115
           WDTAGQE +  LR   YRGAD  +L FS+  R S+EN L  W  E  +Y+        P 
Sbjct: 61  WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPF 119
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           V++G K+D +ED+           VTT + +    + G   Y+E S+K   NV   F+ A
Sbjct: 120 VVLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEA 168

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    ++ E  TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  R S++NV K+WI E+  Y+   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             +           VT+ +G EL    G   +IE S+K   NV+  F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           MA  +S F K + +GDG VGK+ ++  Y +NKF T    T+   F + ++  +G  V + 
Sbjct: 1   MAGKSSLF-KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
           +WDTAGQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P
Sbjct: 60  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFP 118
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            V++G K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ 
Sbjct: 119 FVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167
Query: 175 A 175
           A
Sbjct: 168 A 168

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           MA  +S F K + +GDG VGK+ ++  Y +NKF T    T+   F + ++  +G  V + 
Sbjct: 3   MAGKSSLF-KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 61
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
           +WDTAGQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P
Sbjct: 62  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFP 120
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            V++G K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ 
Sbjct: 121 FVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169
Query: 175 A 175
           A
Sbjct: 170 A 170

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 15/170 (8%)
Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDT 63
            S  +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKL 122
           AGQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K 
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           D+               VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 123 DMETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 18/180 (10%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
           ++  S   K + +GDG VGK+ ++  Y +NKF +    T+   F + ++  +G  V + +
Sbjct: 5   SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQI 64
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPV 115
           WDTAGQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P 
Sbjct: 65  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPF 123
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           V++G K D++E +           V+T + +   K  G   Y E S+K   NV A F+ A
Sbjct: 124 VILGNKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEA 172

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGL 60
             S    +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L L
Sbjct: 14  GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVG 119
           WDTAGQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG
Sbjct: 74  WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVG 132
Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            K D+               VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 133 NKSDMETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 20/178 (11%)
Query: 1   MASSASRFI--KCVTVGDGAVGKTCMLICYTSNKF---PTDYIPTVFDNFSANVVAEGTT 55
           MA++ ++ I  K V +GD   GK+ +++ +  ++F       I   F  FS  +     T
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDAT 60
Query: 56  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVP 114
           V   +WDTAGQE Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ ELQ   +P + 
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMV 119
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           + L G K DL + +             TA+  +   Q    +++E S+KT  NVK +F
Sbjct: 120 MALAGNKSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET 122
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                        VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 123 R-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+L FS+    S+      ++ I  ++     +P+++VG K DL E 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +         VPV  A+    + +     Y+E S+KT+ NV  VF
Sbjct: 129 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+L FS+    S+      ++ I  ++     +P+++VG K DL E 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +         VPV  A+    + +     Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 158

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+G VGKT +++ Y  NKF   +I T+  +F +  +   G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG K+DL ++
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+G VGKT +++ Y  NKF   +I T+  +F +  +   G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG K+DL ++
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 124 -----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+G VGKT +++ Y  NKF   +I T+  +F +  +   G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG K+DL ++
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXETR 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 124 -----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV---AEGTT--------V 56
            IK + +GD  VGKT  L  YT NKF   +I TV  +F    V   A+G          V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           +L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAV 171
           +VL+G K DL          P    V   Q  EL  + G  Y+ E S+ T QNV KAV
Sbjct: 144 IVLIGNKADL----------PDQREVNERQARELADKYGIPYF-ETSAATGQNVEKAV 190

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
           MA +     K + +GD  VGKTC+L  ++ + F + +I T+  +F    +  +G  + L 
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLV 118
           +WDTAGQE +  +    YRGA   +L + + +  S++N+ + WI  + +H S  V  +++
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMIL 119
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           G K D+ + +           V+  +GE+L    G   ++E S+K   NV+  F
Sbjct: 120 GNKCDVNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y R+    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP   A+    +  +    +IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K + +GD  VGK C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 15/169 (8%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
            K + VGD  VGKTC+L+ +    F    +I TV  +F   V+  +G  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLR 125
           E +  +    YR A   +L + + ++AS++N+ + W+ E+  Y+   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            ++           V    GE+L K+ G   ++E S+KT  NV   F A
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
            IK + +GD  VGKT  L  YT NKF   +I TV  +F    V      A+G +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169
           +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 139 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 174

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
            IK + +GD  VGKT  L  YT NKF   +I TV  +F    V      A+G +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +LQ   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169
           +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 148 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
            IK + +GD  VGKT  L  YT NKF   +I TV  +F    V      A+G +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169
           +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 85/175 (48%), Gaps = 25/175 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV------AEGTT-----V 56
            IK + +GD  VGKT  L  YT NKF   +I TV  +F    V      A+G +     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           +L LWDTAG E +  L    +R A  F+L F L S+ S+ NV + W  +LQ   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 169
           +VL+G K DL          P    V   Q  EL ++ G  Y+ E S+ T QNV+
Sbjct: 130 IVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D+ E
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           ++        +VP  T +G+ L +Q+G  ++ E S+K   +V+  F+
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFDFF-EASAKENISVRQAFE 178

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGKTC+L  ++ + F + +I T+  +F    +  +G  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + + +  S++N+ + WI  + +H S  V  +++G K D+ + 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V+  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K V +G+  VGKTC++  +T   FP     T+  +F    V   G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YR A+  +L + +    S+   L +W+ E++ Y S  V  VLVG K+DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLA 144
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           E +           V+  + EE   +    YY+E S+K   NV+ +F
Sbjct: 145 ERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKLF 180

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                  P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL ED
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 137
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 138 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL ED
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 125
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 126 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                  P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL ED
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 133
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 134 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
           + S+ +   K + +GD  VGK+C+L+ +T  +F   +  T+   F A ++  +G  + L 
Sbjct: 3   LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLV 118
           +WDTAGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+
Sbjct: 63  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLI 121
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           G K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct: 122 GNKSDLESRR----------EVKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 87/165 (52%), Gaps = 15/165 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL ED
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 123
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K         V V  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 124 KRQ-------VSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 14/170 (8%)
Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDT 63
            S   K + +GD  VGK+C+L+ +T  +F   +  T+   F A +V  +G  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKL 122
           AGQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH S  + ++L+G K 
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGNKS 136
Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct: 137 DLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 127 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 162

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     +      V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           +++ +    YRGA   VL FS   R S+E  +  W  ++      +P  LV  K+DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                       +   + E L K++   +Y   S K   NV  VF
Sbjct: 125 S----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTV-NL 58
           M+S     +K + +GD  VGKT ++  Y ++K+   Y  T+  +F +  V  +G  V  +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 59  GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHY---SPGV- 113
            +WDTAGQE +  L    YRGAD  VL + + + +S+EN+ K W  E L H    SP   
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119
Query: 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           P V++G K+D  E K  +++            +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESKKIVSEKS---------AQELAKSLGDIPLFLTSAKNAINVDTAFE 170

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +      + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D+ +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           ++           V++ +G +L   +G  ++ E S+K   NVK  F+
Sbjct: 125 ER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 160

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 148 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
           M S      K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V  +G TV L 
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLV 118
           +WDTAGQE +  +    YRG+   ++ + +  + S+ N +K W+ E+  Y+   V  +LV
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLV 119
Query: 119 GTKLDLREDK 128
           G K DL++ +
Sbjct: 120 GNKCDLKDKR 129

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 13/174 (7%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
           MA       K + +GD  VGK+ +L+ +  N F   YI T+  +F    V   G  V L 
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 119
           +WDTAGQE +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  +LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVG 120
Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            K           D P    V T    +   Q+G   + E S+K   NV+ +F+
Sbjct: 121 NK----------NDDPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFN 163

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + + LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 130 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 165

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLG 59
           M S      K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V  +G TV L 
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLV 118
           +WDTAGQE +  +    YRG+   ++ + +  + S+ N +K W+ E+  Y+   V  +LV
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLV 119
Query: 119 GTKLDLREDK 128
           G K DL++ +
Sbjct: 120 GNKCDLKDKR 129

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  +   T+   F+  ++  +G T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + + LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 124 --------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 159

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRE 126
            +  L P  YR A   ++ + +    S+    + W+ EL +  S  + + LVG K+D  +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +        G   V   +GE+L ++ G  ++ E S+KT +NV  VF
Sbjct: 123 E-------GGERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVF 160

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS+    S+      ++ I  ++     VP +LVG K DL ED
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDL-ED 125
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           K         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 126 KRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 14/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +  + F TDY PT+ D+++   V +     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 81  DVFVLAFSLVSRASYENVLK--KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+L FS+  R S+E + K  + I  ++      P++L+G K DL        DH    
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE-FPMILIGNKADL--------DHQR-- 126
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            VT  +G++L +Q+  + Y+E S+K + NV   F
Sbjct: 127 QVTQEEGQQLARQLKVT-YMEASAKIRMNVDQAF 159

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRED 127
           +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG K DL + 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           +T  +GE+  K++    +IE S+KT  NVK +F
Sbjct: 123 RQ----------ITIEEGEQRAKELSV-MFIETSAKTGYNVKQLF 156

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
           ++ + +G   VGKT ++  +T + F      TV  +F    V   G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +N +    YR A   +L + +  + ++++ L KW+  +  Y S    ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           D+           +T  QGE+  +QI    + E S+K   NV  +F
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTA 64
           S   K + +GD  VGK+C+L  +T  KF  D   T+   F   ++   G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123
           GQE +  +    YRGA   ++ + +  R++Y N L  W+ + ++ + P   ++L+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 131
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           L   +           VT  + ++  ++ G   ++E S+KT +NV+  F
Sbjct: 132 LEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ YS     V+LVG K DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           ++        +VP     G  L   +G  ++ E S+K   NVK VF+
Sbjct: 142 ER--------VVP--AEDGRRLADDLGFEFF-EASAKENINVKQVFE 177

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGL 60
            S      K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V  +G TV L +
Sbjct: 15  GSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 74
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVG 119
           WDTAGQE +  +    YRG+   ++ + +  + S+ N +K W+ E+  Y+   V  +LVG
Sbjct: 75  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATSTVLKLLVG 133
Query: 120 TKLDLREDK 128
            K DL++ +
Sbjct: 134 NKCDLKDKR 142

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 83/174 (47%), Gaps = 25/174 (14%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------AN----VVAEGTTV 56
            IK + +GD  VGKT +L  YT  KF + +I TV  +F        AN     V  G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVP 114
           +L LWDTAG E +  L    +R A  F+L F L +  S+ NV + WI +LQ   YS    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168
           +VL G K DL + +           V   +  EL ++ G  Y+ E S+    N+
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGTNI 172

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRL 72
           +GD  VGK+C+L+ +  + +   YI T+  +F    +  +G T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 73  RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDL 124
               YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 9   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 68
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 69  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 128 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 163

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVN-LGLWD 62
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G  ++   +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTK 121
           TAGQE ++ L P+ YRG+   V+ + +  + S+   LKKW+ EL+ + P  + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGNK 137
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            DL + +         VP+  A+  E  + IGA   +E S+K   N++ +F
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELF 177

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
           R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  TV L LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
           QE +  L P   R + V V+ + + +  S+     KWI +++      V ++LVG K DL
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V+T +GE   K++    +IE S+K   NVK +F
Sbjct: 132 SDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 16/173 (9%)
Query: 4   SASRF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGL 60
           SAS+    K V +G+ AVGK+ +++ +   +F      T+   F + +V  + TTV   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 119
           WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++    K W+ ELQ   SP + + L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAG 120
Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            K DL   +        +V    AQ       +    ++E S+KT  NV  +F
Sbjct: 121 NKADLANKR--------MVEYEEAQAYADDNSL---LFMETSAKTAMNVNDLF 162

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
             K + +G    GK+C+L  +  NKF  D   T+   F + VV   G TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   +L + + SR +Y N L  W+ + +   SP + V+L G K DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGNKKDLD 143
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            ++        L     AQ  EL        ++E S+ T +NV+  F
Sbjct: 144 PEREVTF----LEASRFAQENEL-------MFLETSALTGENVEEAF 179

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQER 66
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 126 RAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIFMA 161

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +      + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D  +
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           ++           V++ +G +L   +G  ++ E S+K   NVK  F+
Sbjct: 128 ER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 163

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 5   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G K DL   
Sbjct: 65  YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 124 RAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIFMA 159

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTA 64
           S   K + +GD  VGK+C+L  +T  KF  D   T+   F   ++   G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 123
           GQ  +  +    YRGA   ++ + +  R++Y N L  W+ + ++ + P   ++L+G K D
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGNKAD 146
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           L   +           VT  + ++  ++ G   ++E S+KT +NV+  F
Sbjct: 147 LEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 184

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+  VGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+  VGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
            K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL-- 124
            Y+ L P  YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL  
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 ------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                 +E + Y  D+  L                   + E S+KT  NV  +F A
Sbjct: 127 KRAVDFQEAQSYADDNSLL-------------------FXETSAKTSXNVNEIFXA 163

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V  +     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
           E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 121 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+  VGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+  VGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+  VGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 127 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 162

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQED 68
           K V +G+  VGKT +L  +T N+F  D   T+   FS   V  GT  V   +WDTAG E 
Sbjct: 12  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-- 125
           Y  +    YRGA   +L F L    +Y  V+++W+ EL  H    + V+LVG K DL   
Sbjct: 72  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 126 -----EDKHYLADHPGLVPVTTA 143
                E+    A++ GL+ + T+
Sbjct: 131 REVPTEEARMFAENNGLLFLETS 153

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K V VGD +VGKTC++  + +  F      T+  +F+   +  +G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR 125
           E +  +    YR A+  +LA+ +  R+S+ +V   WI +++ Y+   +  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           E          L  V+ A+ + L +       IE S+K   NV+  F
Sbjct: 148 E----------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQED 68
           K V +G+  VGKT +L  +T N+F  D   T+   FS   V  GT  V   +WDTAG E 
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-- 125
           Y  +    YRGA   +L F L    +Y  V+++W+ EL  H    + V+LVG K DL   
Sbjct: 87  YRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 126 -----EDKHYLADHPGLVPVTTA 143
                E+    A++ GL+ + T+
Sbjct: 146 REVPTEEARMFAENNGLLFLETS 168

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 126 RAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 161

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G G VGK+ + + +    F  +Y PT+ D++   V  +     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
           E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRED 127
           +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG K DL + 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 155

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K  + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V  +     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
           E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDL 120
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 121 EDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG + DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F   Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F   Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 81  DVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+   N+ ++ I  ++  S  VP+VLVG K DL          P   
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V T Q  EL K  G   +IE S+KT+Q V+  F
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAF 174

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y P++ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLG 59
           M+ +     K + +G+   GK+C+L  +   KF  D   T+   F + ++   G  V L 
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 118
           +WDTAGQE +  +    YRGA   +L + + SR +Y N L  W+ + +   S  + ++L 
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILC 121
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           G K DL  D+        L     AQ  EL        ++E S+ T +NV+  F
Sbjct: 122 GNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGENVEEAF 164

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y P++ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 162

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  ++ PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
           R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
           QE +  L P   R +   V+ + + +  S++    KWI +++      V ++LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F +  V  + TTV   +WDTAG E 
Sbjct: 7   KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLER 66
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL--- 124
           Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G K DL   
Sbjct: 67  YHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 125 -----REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
                +E + Y  D+  L                   ++E S+KT  NV  +F A
Sbjct: 126 RAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIFMA 161

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 14/165 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ AVGKT ++  +  + F  +Y  T+  D  S  +  +   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGTKLDLRED 127
           +  L P   R +   ++ + + +R S+EN   KWI + L      V + LVG K DL + 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGD- 120
Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                    L  VT  +G +  ++    ++ E S+K   N+K +F
Sbjct: 121 ---------LRKVTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ +++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 18/175 (10%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           MA SA   +K    G   VGK+ +++ + + +F  +Y PT+   +      +   V++ +
Sbjct: 23  MAKSAE--VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEI 80
Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 118
            DTAGQED  + R    R  + FVL + +  R S+E V  LK  + E++     V ++LV
Sbjct: 81  LDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILV 138
Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVF 172
           G K DL        DH     V+T +GE+L  ++  ++Y ECS+ T + N+  +F
Sbjct: 139 GNKADL--------DHSR--QVSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T N+F  D   T+   F+   +  EG  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   ++ + +   +SYEN    W+ EL ++    V V L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
               +L   P     T AQ  +L        + E S+   +NV   F+
Sbjct: 132 ----HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFE 168

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G   VGK+ + + +    F   Y PT+ D++   V  +     L + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
           E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LVG K DL
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDL 122
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 123 EDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
           R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  TV L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
            E +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG K DL
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
           +K + +G+  VGK+ +L+ +T + F  +   T+  +F    ++ +G    L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVGTKLDLR 125
            +  L P  YRGA   +L + +  R ++   L  W+ EL+ Y     +V  LVG K+D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           E++           V   +G +  ++  +  +IE S+KT   V+  F+
Sbjct: 134 ENRE----------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFE 170

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWD 62
           S SR  K + +GD  VGKTC+   + + +FP     T+  +F    V  +G  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 63  TAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVG 119
           TAGQE + + +    YR     V  + + + AS+ + L  WI E + +  +  +P +LVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHLLANDIPRILVG 134
Query: 120 TKLDLR 125
            K DLR
Sbjct: 135 NKCDLR 140

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL          P   
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
           R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  TV L LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
            E +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG K DL
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 134 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
           +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
            V++G K+DL
Sbjct: 120 FVVLGNKIDL 129

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
           +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
            V++G K+DL
Sbjct: 120 FVVLGNKIDL 129

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +Y PT+ D++   VV +G T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I    N F  +  PT+ D++   VV +G T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           + F+  F++ +  S+E++   ++ I  ++  S  VP+VLVG K DL              
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
             K + +G+   GK+C+L  +   KF  D   T+   F + ++   G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   +L + + SR +Y N L  W+ + +   S  + ++L G K DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            D+        L     AQ  EL        ++E S+ T ++V+  F
Sbjct: 130 ADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEAF 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
           +WDTAGQE +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
            V++G K+D 
Sbjct: 120 FVVLGNKIDF 129

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLG 59
           +  + SR  K + +GD  VGKTC+   + + +FP     T+  +F    V  +G  + + 
Sbjct: 22  LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 60  LWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVV 116
           LWDTAGQE + + +    YR     V  +   + AS+ + L  WI E + +  +  +P +
Sbjct: 82  LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHLLANDIPRI 140
Query: 117 LVGTKLDLR 125
           LVG K DLR
Sbjct: 141 LVGNKCDLR 149

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 8/167 (4%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWD 62
           S+ +  K V  GD AVGK+  L+    N+F  +   T+  +F    ++ +G    L LWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTK 121
           TAGQE +  +    +R AD  +L + +    S+ N+ ++W+  ++  +   VP++LVG K
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168
            D+R+     A   G   V    GE+L    GA  + E S+K   N+
Sbjct: 143 ADIRD----TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAG 65
           R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  T+ L LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
            E +  L P   R +   V+ + + +  S++    KWI +++      V ++LVG K DL
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V+  +GE   K++    +IE S+K   NVK +F
Sbjct: 131 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV--AEGTTVNLGLWDTAG 65
             K V +GD  VGK+ +L  +T ++F  +   T+   F+   +       +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDL 124
           QE Y  +    YRGA   +L + +  + S+EN+ +KW+ EL+ +    + ++LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 125 R 125
           +
Sbjct: 126 K 126

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+PT+       V       +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
           K
Sbjct: 130 K 130

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 14/168 (8%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVN-LGLWDTAG 65
           R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V     ++   +WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDL 124
           QE +  L P+ YRG+   ++ + +    ++ + LK W+ EL QH  P + V + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            + +           V     ++    I A  ++E S+K   N+  +F
Sbjct: 123 TDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 159

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLG 59
           M S     +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V+ +   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVP 114
           +WDTAG E +  L    YRGAD  VL F + +  +++  L  W  E L   SP      P
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFP 119
Query: 115 VVLVGTKLDL 124
            V++G K+DL
Sbjct: 120 FVVLGNKIDL 129

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 14/171 (8%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVN-LGLWD 62
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V     ++   +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTK 121
           TAG E +  L P+ YRG+   ++ + +    ++ + LK W+ EL QH  P + V + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNK 120
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            DL + +           V     ++    I A  ++E S+K   N+  +F
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 160

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+PT+       V       +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
             K + +G+   GK+C+L  +   KF  D   T+   F + ++   G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YRGA   +L + + SR +Y N L  W+ + +   S  + ++L G K DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            D+        L     AQ  EL        ++E S+ T ++V+  F
Sbjct: 127 ADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEAF 162

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQ 66
             K V +GD  VGK+ +L  +T+++F  +   T+   F+   +  E   +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR 125
           E Y  +    YRGA   ++ + +   +SYEN    W+ EL ++    V V L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                   H   VP   A+   +  Q+    + E S+    NV   F
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R+ K V +G   VGKT +   +   +F   Y PTV + +S  V       +L L DTAGQ
Sbjct: 23  RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 67  EDYNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLD 123
           ++Y+ L P S+  G   +VL +S+ S  S++ V++    +L   H    VPVVLVG K D
Sbjct: 83  DEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVGNKAD 140
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           L  ++           V   +G++L +  GA+ ++E S++  Q  + +F
Sbjct: 141 LSPER----------EVQAVEGKKLAESWGAT-FMESSARENQLTQGIF 178

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 13/160 (8%)
Query: 15  GDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP 74
           G G VGK+ +++ +    F   YIPTV D +   +  + +   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 75  LSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 132
           LS      F+L +S+ SR S E +  + + I E++     +P++LVG K D    +    
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 133 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
                  V +++ E L +    + ++E S+K   NVK +F
Sbjct: 127 -------VQSSEAEALARTWKCA-FMETSAKLNHNVKELF 158

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +  + F +DY PT+ D+++     +G    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 81  DVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 139
             F+L F++  R S+  V K +   L+       PVVLVG K DL   +         VP
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 140 VTTAQGEELRKQIGASY---YIECSSKTQQNVKAVFD 173
            + A         GAS+   Y E S+K + NV   F+
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFE 164

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  YGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
           K
Sbjct: 130 K 130

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   YI T+  +    +       +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D++E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 128 K 128
           K
Sbjct: 124 K 124

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   YI T+  +    +       +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D++E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 128 K 128
           K
Sbjct: 125 K 125

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 128 K 128
           K
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 128 K 128
           K
Sbjct: 135 K 135

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   YI T+  +    +       +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D++E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 128 K 128
           K
Sbjct: 132 K 132

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAGQE 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  L    Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  FGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 128 K 128
           K
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQE 67
            K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 128 K 128
           K
Sbjct: 126 K 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+       V       +   +WDTAG E 
Sbjct: 12  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 72  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 130

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +    Y+ T+       V       +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 28/180 (15%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           M  S SR  K   +G  +VGK+ + I +   +F   Y PT+ + F+  +   G   +L L
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
Query: 61  WDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 112
            DTAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E +      L   + ++Q     
Sbjct: 59  VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 111
Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +P++LVG K DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF
Sbjct: 112 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +    F  DY PT+ D++  +   +     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           D F++ +S+  +AS+E+V    + I  ++      P++LV  K+DL            L 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
            VT  QG+E+  +     YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 90/180 (50%), Gaps = 28/180 (15%)
Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           M  S SR  K   +G  +VGK+ + I +   +F   Y PT+ + F+  +   G   +L L
Sbjct: 1   MPQSKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQL 58
Query: 61  WDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPG 112
            DTAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E +      L   + ++Q     
Sbjct: 59  VDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----- 111
Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +P++LVG K DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF
Sbjct: 112 IPIMLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 160

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + + + +  F   Y PT+ D +   +  + +   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 124
             F+L +SLV++ S++++  ++  I  ++ Y   VPV+LVG K+DL
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL 120

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +    F  DY PT+ D++  +   +     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           D F++ +S+  +AS+E+V    + I  ++      P++LV  K+DL            L 
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 134
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
            VT  QG+E+  +     YIE S+K
Sbjct: 135 KVTRDQGKEMATKYNIP-YIETSAK 158

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FDNFSANVVAEGTTVNLGLWDTAGQE 67
           K   +GDG VGKT  +      +F  +Y  TV   ++    +  +G  +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLRE 126
               L+ + Y GA   +L F + SR + +N L +W+ E Q       P+V+   K+D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASY-YIECSSKTQQN 167
            +           ++     E+ K  G +Y Y E S+KT  N
Sbjct: 132 RQK----------ISKKLVMEVLK--GKNYEYFEISAKTAHN 161

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +    F  +Y PT+ D++  +   +     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           D F++ +S+  +AS+E+V    + I  ++      P++LV  K+DL            L 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
            VT  QG+E+  +     YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGT-TVNLGLW 61
           S  R +K V +GDGA GKT +  C+    F   Y  T+  D F   +   G   V L +W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPGVPVV-L 117
           D  GQ    ++      GA   +L + + +  S+EN L+ W   + ++   S   P+V L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESETQPLVAL 120
Query: 118 VGTKLDLRE 126
           VG K+DL  
Sbjct: 121 VGNKIDLEH 129

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K   +G  +VGK+ + I +   +F   Y PT+ + F+  +   G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 70  NRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPGVPVVLVGTK 121
           + + P +Y   D+  ++L +S+ S  S+E +      L   + ++Q     +P++LVG K
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-----IPIMLVGNK 115
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF
Sbjct: 116 KDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ + I +    F  +Y PT+ D++  +   +     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
           D F++ +S+  +AS+E+V    + I  ++      P++LV  K+DL            L 
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LR 139
Query: 139 PVTTAQGEELRKQIGASYYIECSSK 163
            VT  QG+E+  +     YIE S+K
Sbjct: 140 KVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 21  KTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 80
           K+ +++ +    F   YIPT+ D +   +  + +   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 81  DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 138
             F+L FS+ S+ S E +  + K I +++     +PV+LVG K D  + +          
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE---------- 130
Query: 139 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            V T + + + ++   + ++E S+K   NVK +F
Sbjct: 131 -VDTREAQAVAQEWKCA-FMETSAKMNYNVKELF 162

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 28/177 (15%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S SR  K   +G  +VGK+ + I +   +F     PT+ + F+  +   G   +L L DT
Sbjct: 2   SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 64  AGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYENV------LKKWIPELQHYSPGVPV 115
           AGQ++Y+ + P +Y   D+  ++L +S+ S  S+E +      L   + ++Q     +P+
Sbjct: 60  AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-----IPI 112
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +LVG K DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF
Sbjct: 113 MLVGNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 28/124 (22%)
Query: 56  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115
           +   +WDTAGQE Y  + PL YRGA   ++ F  +S ++  +  K W+ +L+  S    +
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYII 150
Query: 116 VLVGTKL-------DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 168
           +LV  K+       D+ E + Y  D+  L                   +I+ S+KT  N+
Sbjct: 151 ILVANKIDKNKFQVDILEVQKYAQDNNLL-------------------FIQTSAKTGTNI 191
Query: 169 KAVF 172
           K +F
Sbjct: 192 KNIF 195

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR 73
           VG    GKT  +    S +F  D IPTV   F+   V +G  V + +WD  GQ  +  + 
Sbjct: 28  VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKG-NVTIKIWDIGGQPRFRSMW 84
Query: 74  PLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 124
               RG +  V       R   E       N+L K  P+LQ    G+PV+++G K DL
Sbjct: 85  ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNLGLWD 62
           + + V +G+  VGK+ +   +       D    V   D +   ++ +G   T + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTK 121
             G+ ++  L     +  D +++ +S+  RAS+E   +  I       +  +P++LVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            DL   +         V V+  +   +   +    +IE S+  Q NVK +F+ 
Sbjct: 124 SDLVRXRE--------VSVSEGRAXAV---VFDXKFIETSAAVQHNVKELFEG 165

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNLGLWD 62
           + + V +G+  VGK+ +   +       D    V   D +   ++ +G   T + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTK 121
             G+ ++  L     +  D +++ +S+  RAS+E   +  I       +  +P++LVG K
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            DL   +         V V+  +   +   +    +IE S+  Q NVK +F+ 
Sbjct: 124 SDLVRXRE--------VSVSEGRAXAV---VFDCKFIETSAAVQHNVKELFEG 165

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTVNL 58
           S + + + V +G+  VGK+ +   +       D    V   D +   ++ +G   T + L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 59  GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVL 117
            +W+  G+ ++  L     +  D +++ +S+  RAS+E   +  I       +  +P++L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 118 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
           VG K DL   +           V+ ++G      +    +IE S+  Q NVK +F+ 
Sbjct: 120 VGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEG 165

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF--DNFSANVVAEG---TTV 56
           + S + + + V +G+  VGK+ +   +       D    V   D +   ++ +G   T +
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90
Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPV 115
            L +W+  G+ ++  L     +  D +++ +S+  RAS+E   +  I       +  +P+
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPI 148
Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
           +LVG K DL   +           V+ ++G      +    +IE S+  Q NVK +F+ 
Sbjct: 149 ILVGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFIETSAAVQHNVKELFEG 196

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++   VG    GKT  +    S +F  D IPTV   F+   + +G  V + LWD  GQ  
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKG-NVTIKLWDIGGQPR 79
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTK 121
           +  +     RG    V       +   E       N+L K  P+LQ    G+PV+++G K
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNK 133
Query: 122 LDL 124
            DL
Sbjct: 134 RDL 136

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++   VG    GKT  +    S +F  D IPTV   F+   + +G  V + LWD  GQ  
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--GFNMRKITKG-NVTIKLWDIGGQPR 88
Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVPVVLVGTK 121
           +  +     RG    V       +   E       N+L K  P+LQ    G+PV+++G K
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIPVLVLGNK 142
Query: 122 LDL 124
            DL
Sbjct: 143 RDL 145

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 10  KCVTVGDGAVGKTCMLICYTS--NKFPTDYIPTV-FDNFSANVVAEGTTVN--LGLWDTA 64
           K   VG+  VGK+ ++  +TS  +KF  DY  T   +   A V    TTV+  L L DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG----VPVVLVGT 120
           G + Y       + G    +L F + S  S+E+  K W   L+   P     +  VLV  
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140
Query: 121 KLDLREDKH 129
           K DL   +H
Sbjct: 141 KTDLPPQRH 149

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 8   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQ 66
             K + VG+  VGK+ +   +   +  + + P    D +   ++ +   V L ++D   Q
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 67  EDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLD 123
            D    LR    +  D F++ FS+  R S+  V +  +  L+   P   +PV+LVG K D
Sbjct: 83  GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 141
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           L   +           V+  +G  L   + +  +IE S+    N + +F+ A
Sbjct: 142 LARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 182

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +    +G    GK+ + + + + +F ++Y P + D +S+    +   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 69  -YNRLRPLSYRGADVFVLAFSL------VSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
             N  R L++  A  F++ +S+       S +SY  +L     E Q     +P +L+G K
Sbjct: 82  PRNCERYLNW--AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQR---SIPALLLGNK 136
Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           LD+ + +           VT A+G  L  + G  ++   +    ++V+ VF  A
Sbjct: 137 LDMAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEA 180

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 14/167 (8%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT--AGQE 67
           + V +GD  VGKT +   +   +    +     D +   +  +G    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLRE 126
           D +  +    +G   +V+ +S+  R S+E+  +  I     H +  VP++LVG K DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            +    +      V           +    +IE S+  Q NV  +F+
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFE 161

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDY---IPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           K + VG+  VGK+ +    T      D+   +    D +   ++ +   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 67  EDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLD 123
            D    L+    +  D F++ FS+  R S+  V +  +  L+   P   +PV+LVG K D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           L   +           V+  +G  L   + +  +IE S+    N + +F+ A
Sbjct: 121 LARSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 161

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           K + +G+  VGK+ +   +   +    + +    D +   ++ +   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 69  YNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLR 125
               L+    +  D F++ FS+  R S+  V +  +  L+   P   +PV+LVG K DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
             +           V+  +G  L   + +  +IE S+    N + +F+ A
Sbjct: 133 RSR----------EVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFEGA 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-114
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-108
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-108
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-105
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-104
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-104
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-102
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-101
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-100
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-100
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-97
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	3e-96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-88
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-50
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-49
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-49
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	5e-49
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	7e-48
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	9e-48
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-46
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-46
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-46
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-46
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-45
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-43
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-42
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-42
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-41
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-41
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-41
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-41
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-41
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-41
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-40
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-40
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-40
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	2e-40
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-40
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-40
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	7e-40
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	8e-40
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-39
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-39
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-39
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-39
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-39
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	6e-39
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-39
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-39
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-39
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-38
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-38
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-38
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-38
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-38
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-38
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-38
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-38
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-38
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-38
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-38
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	7e-38
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-38
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-37
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-37
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-37
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-37
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-37
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-37
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-36
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-36
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	6e-34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-32
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-30
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	5e-13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-12
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-04
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  323 bits (829), Expect = e-114
 Identities = 152/205 (74%), Positives = 178/205 (86%), Gaps = 7/205 (3%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S S+FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV  +G  VNLGLWDT
Sbjct: 5   SVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDT 64

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTKLD
Sbjct: 65  AGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLD 124

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           LR+DK YLADH     +T+ QGEELRKQIGA+ YIECSSKTQQNVKAVFD AIKVV++PP
Sbjct: 125 LRDDKGYLADHTN--VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182

Query: 184 QKQ----KEKKKKQRGCLL-NVFCG 203
           +++    + K  ++ GC + ++ CG
Sbjct: 183 RRKEVPRRRKNHRRSGCSIASIVCG 207

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  308 bits (790), Expect = e-108
 Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 8/185 (4%)

Query: 3   SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
            +  + +K V VGDGAVGKTC+L+ ++  + PT Y+PTVF+NFS  +  +     L LWD
Sbjct: 18  ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWD 77

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
           TAGQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K+
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKV 137

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           DLR+D            VT  +G++L +++G   YIE SS  +  +  VF+ ++  +   
Sbjct: 138 DLRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

Query: 183 PQKQK 187
               K
Sbjct: 190 KPVPK 194

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  306 bits (786), Expect = e-108
 Identities = 147/181 (81%), Positives = 165/181 (91%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           + SASRFIKCVTVGDGAVGKTC+LI YTSN FPTDY+PTVFDNFSANVV  G TVNLGLW
Sbjct: 2   SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLW 61

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           LDLR+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAAI+VV++
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

Query: 182 P 182
           P
Sbjct: 182 P 182

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  301 bits (773), Expect = e-105
 Identities = 92/188 (48%), Positives = 129/188 (68%), Gaps = 2/188 (1%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
             +  R +KCV VGDGAVGKT +++ YT+N +PT+YIPT FDNFSA V  +G  V L L 
Sbjct: 14  GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLC 73

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQ+++++LRPL Y   D+F+L FS+VS +S++NV +KW+PE++ + P  P++LVGT+
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133

Query: 122 LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            DLRED   L   D     PV     + L ++I A+ YIECS+ TQ+N+K VFDAAI   
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193

Query: 180 IKPPQKQK 187
           I+    Q+
Sbjct: 194 IQYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  298 bits (765), Expect = e-104
 Identities = 78/186 (41%), Positives = 114/186 (61%), Gaps = 2/186 (1%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           A    R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+  +G  V+L +W
Sbjct: 28  APPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIW 87

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DTAGQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VP+++VG K
Sbjct: 88  DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147

Query: 122 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            DLR+DK  +      GL PVT  +G+E+ + +GA  Y+ECS++   NV AVF  A +V 
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207

Query: 180 IKPPQK 185
           +    +
Sbjct: 208 LSSRGR 213

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  297 bits (762), Expect = e-104
 Identities = 82/189 (43%), Positives = 121/189 (64%), Gaps = 2/189 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           +   +    K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L L
Sbjct: 18  LYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELAL 77

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVAN 137

Query: 121 KLDLREDKHYLADHP--GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           K DLR D+H   +       PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A + 
Sbjct: 138 KKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRA 197

Query: 179 VIKPPQKQK 187
            ++     +
Sbjct: 198 ALQKRYGSQ 206

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  292 bits (750), Expect = e-102
 Identities = 108/180 (60%), Positives = 135/180 (75%), Gaps = 2/180 (1%)

Query: 3   SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
               + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWD
Sbjct: 25  YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 84

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
           TAGQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKL
Sbjct: 85  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144

Query: 123 DLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           DLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  289 bits (742), Expect = e-101
 Identities = 82/175 (46%), Positives = 121/175 (69%), Gaps = 2/175 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V VGDGA GKTC+LI ++ ++FP  Y+PTVF+N+ A++  +G  V L LWDTAGQED
Sbjct: 26  KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR+D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145

Query: 129 HYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           H   +       PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  ++
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  287 bits (736), Expect = e-100
 Identities = 91/184 (49%), Positives = 132/184 (71%), Gaps = 2/184 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
                +  +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LGL
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGL 70

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           +DTAGQEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT
Sbjct: 71  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGT 130

Query: 121 KLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           ++DLR+D   LA  +     P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  
Sbjct: 131 QIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 190

Query: 179 VIKP 182
           ++ P
Sbjct: 191 ILTP 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  287 bits (736), Expect = e-100
 Identities = 68/184 (36%), Positives = 105/184 (57%), Gaps = 3/184 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           M  + +   K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140

Query: 121 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIK 177
           K DLR D   L +  +    PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A  
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200

Query: 178 VVIK 181
             + 
Sbjct: 201 ACVN 204

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  284 bits (728), Expect = 4e-99
 Identities = 110/185 (59%), Positives = 139/185 (75%), Gaps = 2/185 (1%)

Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
           + + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
           GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 125 REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+ P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 183 PQKQK 187
           P  +K
Sbjct: 182 PPVKK 186

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  278 bits (714), Expect = 7e-97
 Identities = 68/183 (37%), Positives = 105/183 (57%), Gaps = 3/183 (1%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
            S+ +   K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LW
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLW 60

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 121
           DT+G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCK 120

Query: 122 LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKV 178
            DLR D   L +  +    PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A   
Sbjct: 121 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 180

Query: 179 VIK 181
            + 
Sbjct: 181 CVN 183

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  278 bits (712), Expect = 3e-96
 Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 3/190 (1%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
                 K V VGD   GKT ML     + +P  Y+PTVF+N++A +  E   V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           +G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K D
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Query: 124 LREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVI 180
           LR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T + ++ ++F  A  + +
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

Query: 181 KPPQKQKEKK 190
             P    +K 
Sbjct: 203 NKPSPLPQKS 212

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  261 bits (669), Expect = 4e-88
 Identities = 108/185 (58%), Positives = 137/185 (74%), Gaps = 2/185 (1%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           +  +A   IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGL
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGL 207

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 120
           WDTAG EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGT
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267

Query: 121 KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           KLDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 327

Query: 179 VIKPP 183
           V+ PP
Sbjct: 328 VLCPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  161 bits (410), Expect = 2e-50
 Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 18/199 (9%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
                R+ K V +G   VGKT +   +   +F   Y PTV + +S  V       +L L 
Sbjct: 18  GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLV 77

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVG 119
           DTAGQ++Y+ L      G   +VL +S+ S  S++ + +    +L   H    VPVVLVG
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVG 136

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K DL  ++           V   +G++L +  GA+ ++E S++  Q  + +F   I+ +
Sbjct: 137 NKADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEI 185

Query: 180 IKPPQKQKEKKKKQRGCLL 198
                + +    ++R C L
Sbjct: 186 ----ARVENSYGQERRCHL 200

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  158 bits (402), Expect = 1e-49
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
             S+  K   +G  +VGK+ + I +   +F   Y PT+ + F+  +   G   +L L DT
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDT 61

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVGTK 121
           AGQ++Y+          + ++L +S+ S  S+E + K    +L        +P++LVG K
Sbjct: 62  AGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNK 120

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF   I    K
Sbjct: 121 KDLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEK 169

Query: 182 PPQKQKEKKK 191
                 + K 
Sbjct: 170 MDGACSQGKS 179

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  158 bits (403), Expect = 2e-49
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           M   ++ + + V  G G VGK+ +++ +    F   YIPT+ D +   +  + +   L +
Sbjct: 2   MPEQSNDY-RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQI 60

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 118
            DT G   +  ++ LS      F+L FS+ S+ S E +  + K I +++     +PV+LV
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 119 GTKLDL--REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
           G K D   RE             V T + + + ++   + ++E S+K   NVK +F   +
Sbjct: 121 GNKCDETQRE-------------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELL 166

Query: 177 KVVI----------KPPQKQKEKKKKQRGCLL 198
            +            K   KQK   + +  C L
Sbjct: 167 TLETRRNMSLNIDGKRSGKQKRTDRVKGKCTL 198

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  157 bits (399), Expect = 5e-49
 Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 20/201 (9%)

Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
            S   K V VG   VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 122
           GQE+Y+ +R    R  + F+  F++ +  S+E++   +  +++    S  VP+VLVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK- 181
           DL               V T Q ++L +  G   +IE S+KT+Q V   F   ++ + K 
Sbjct: 120 DLPSRT-----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 182 ----PPQKQKEKKKKQRGCLL 198
                   +K+KKK +  C++
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVI 188

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  155 bits (393), Expect = 7e-48
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 32/218 (14%)

Query: 1   MASSAS------RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT 54
           MA++           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE 60

Query: 55  TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPG 112
            V + + DTAGQEDY  +R   +R  + F+  FS+    S+      +  ++        
Sbjct: 61  EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDEN 119

Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           VP +LVG K DL + +           V+  + +   +Q   + Y+E S+KT+ NV  VF
Sbjct: 120 VPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVF 168

Query: 173 DAAIKVVIK------------PPQKQKEKKKKQRGCLL 198
              ++ +                +K   K+ ++R C+L
Sbjct: 169 FDLMREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  153 bits (390), Expect = 9e-48
 Identities = 53/189 (28%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           M    S   K V VG G VGK+ + I +  + F +DY PT+ D+++     +G    L +
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDI 61

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 118
            DTAGQE++  +R    R    F+L F++  R S+  V  K   ++         PVVLV
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLV 120

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           G K DL   +           V  ++          + Y E S+K + NV   F+  ++ 
Sbjct: 121 GNKADLESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRA 169

Query: 179 VIKPPQKQK 187
           V K  +++ 
Sbjct: 170 VRKYQEQEL 178

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  153 bits (389), Expect = 1e-47
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 15/179 (8%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
           S   +    G G VGK+ +++ +    F   YIPTV D +   +  + +   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKL 122
              +  ++ LS      F+L +S+ SR S E + K    ++         +P++LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           D    +           V +++ E L +    + ++E S+K   NVK +F   + +  +
Sbjct: 120 DESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 167

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  150 bits (381), Expect = 1e-46
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 15/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG G VGK+ + I    N F  +  PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++  ++  +++    S  VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                       V + Q ++L +  G   YIE S+KT+Q V+  F   ++ + +
Sbjct: 124 T-----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  150 bits (381), Expect = 1e-46
 Identities = 45/174 (25%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + + +  F   Y PT+ D +   +  + +   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRED 127
             +R L  +    F+L +SLV++ S++++ K    ++        VPV+LVG K+DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V++++G  L ++ G   ++E S+K++  V  +F   ++ +  
Sbjct: 124 RE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVRQMNY 166

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  150 bits (381), Expect = 2e-46
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
              K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDL 124
           EDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            + +           V+  + +    Q   + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 122 EDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIRA 167

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  150 bits (381), Expect = 3e-46
 Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 14/182 (7%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           + ++    K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + 
Sbjct: 12  SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDIL 71

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVG 119
           DTAGQEDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVG 130

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K DL + +           V+  + +   +Q   + Y+E S+KT+ NV  VF   ++ +
Sbjct: 131 NKSDLEDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREI 179

Query: 180 IK 181
             
Sbjct: 180 RA 181

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  149 bits (379), Expect = 5e-46
 Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 15/188 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           +        K V VG G VGK+ + I    N F  +Y PT+ D++   VV +G T  L +
Sbjct: 14  LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 73

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 118
            DTAGQE+Y+ +R    R  + F+  F++ +  S+ ++   +  +++    S  VP+VLV
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLV 132

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           G K DL               V T Q  EL K  G   +IE S+KT+Q V+  F   ++ 
Sbjct: 133 GNKCDLPTRT-----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVRE 180

Query: 179 VIKPPQKQ 186
           + +   K+
Sbjct: 181 IRQYRMKK 188

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  148 bits (376), Expect = 1e-45
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 15/184 (8%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           + S      K V VGDG VGK+ + I +    F  DY PT+ D++  +   +     L +
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDV 70

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 118
            DTAGQE+++ +R    R  D F++ +S+  +AS+E+V  ++   +         P++LV
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILV 129

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIK 177
             K+DL   +           VT  QG+E+  +     YIE S+K    NV   F   ++
Sbjct: 130 ANKVDLMHLRK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVR 178

Query: 178 VVIK 181
           V+ +
Sbjct: 179 VIRQ 182

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  147 bits (373), Expect = 2e-45
 Identities = 43/174 (24%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V +G G VGK+ + + +    F   Y PT+ D++   V  +     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRED 127
             +R L  +    F L +S+ +++++ ++ +    ++     +  VP++LVG K DL ++
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V   QG+ L +Q     ++E S+K++ NV  +F   ++ + +
Sbjct: 124 RV----------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  143 bits (363), Expect = 2e-43
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           + S  +K    G   VGK+ +++ + + +F  +Y PT+   +      +   V++ + DT
Sbjct: 24  AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT 83

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTK 121
           AGQED    R    R  + FVL + +  R S+E V       L        V ++LVG K
Sbjct: 84  AGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNK 141

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVI 180
            DL   +           V+T +GE+L  ++  + + ECS+ T + N+  +F    + V 
Sbjct: 142 ADLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVR 190

Query: 181 KPPQKQ 186
           +    Q
Sbjct: 191 RRRMVQ 196

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  140 bits (355), Expect = 1e-42
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 15/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + +G   VGK+ +   +                +  ++V +G   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRED 127
             L        D +V+ +S+  + S+E    +   +L+    +  VP++LVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V+  +G           +IE S+    NV+A+F+  ++ +  
Sbjct: 122 RE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRL 164

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  139 bits (353), Expect = 2e-42
 Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 13/174 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     +      V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           +++ +    YRGA   VL FS   R S+E +   W  ++      +P  LV  K+DL +D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                       +   + E L K++    +   S K   NV  VF    +  ++
Sbjct: 125 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  140 bits (354), Expect = 3e-42
 Identities = 39/184 (21%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 3   SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWD 62
                 +    +G    GK+ + + + + +F ++Y P + D +S+    +   V+L + D
Sbjct: 16  FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMD 75

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLV 118
           TA  +   R        A  F++ +S+ SR S+++    ++  L  +       +P +L+
Sbjct: 76  TADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLL 133

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ-QNVKAVFDAAIK 177
           G KLD+ + +           VT A+G  L  + G  ++ E S+    ++V+ VF  A++
Sbjct: 134 GNKLDMAQYRQ----------VTKAEGVALAGRFGCLFF-EVSACLDFEHVQHVFHEAVR 182

Query: 178 VVIK 181
              +
Sbjct: 183 EARR 186

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  139 bits (352), Expect = 5e-42
 Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 13/192 (6%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLG 59
           MA       K + +GD  VGK+ +L+ +  N F   YI T+  D     V   G  V L 
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 119
           +WDTAGQE +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  +LVG
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVG 120

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K D  E K           V T    +   Q+G     E S+K   NV+ +F+   ++V
Sbjct: 121 NKNDDPERKV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELV 169

Query: 180 IKPPQKQKEKKK 191
           ++  +    K++
Sbjct: 170 LRAKKDNLAKQQ 181

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  138 bits (349), Expect = 2e-41
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED 68
           K + VG+  VGK+ +   +   +  + + P    D +   ++ +   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 69  Y-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLR 125
               LR    +  D F++ FS+  R S+  V  + +  L+       +PV+LVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             +           V+  +G  L   +    +IE S+    N + +F
Sbjct: 144 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 179

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  137 bits (347), Expect = 2e-41
 Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 24/193 (12%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
              + V +GD  VGKT +   +   +    +     D +   +  +G    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 67  E--DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVGTKL 122
           E  D +  +    +G   +V+ +S+  R S+E+   +   +L   H +  VP++LVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           DL   +           V+  +G           +IE S+  Q NV  +F+  ++ +   
Sbjct: 122 DLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQL--- 167

Query: 183 PQKQKEKKKKQRG 195
                  +++   
Sbjct: 168 -----RLRRRDSA 175

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  137 bits (348), Expect = 2e-41
 Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 17/175 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +K   VG+ + GK+ ++  Y +  +  +  P     F   +V +G +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRE 126
                       D  V  FSL    S++ V   +   L  +  +  VP+VLVGT+  +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                        +  ++  +L   +    Y E  +    NV+ VF    + V+ 
Sbjct: 134 ANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  138 bits (350), Expect = 2e-41
 Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 1   MASSASR----FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTT 55
           MAS+A        K V VGDG  GKT  +  + + +F   Y+ T+  +            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 56  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 115
           +   +WDTAGQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 122

Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           VL G K+D+++ K              A+     ++    YY + S+K+  N +  F   
Sbjct: 123 VLCGNKVDIKDRK------------VKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWL 169

Query: 176 IKVVIKPPQKQ 186
            + +I  P  +
Sbjct: 170 ARKLIGDPNLE 180

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  137 bits (347), Expect = 3e-41
 Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 16/190 (8%)

Query: 1   MASSASRF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVN 57
           MA++ ++    K V +GD   GK+ +++ +  ++F      T+    FS  +     TV 
Sbjct: 3   MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62

Query: 58  LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVV 116
             +WDTAGQE Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ ELQ   +P + + 
Sbjct: 63  FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMA 121

Query: 117 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
           L G K DL + +           VT    +   ++ G  +++E S+KT  NVK +F    
Sbjct: 122 LAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAKTATNVKEIFYEIA 170

Query: 177 KVVIKPPQKQ 186
           + + +    +
Sbjct: 171 RRLPRVQPTE 180

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  136 bits (345), Expect = 4e-41
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K + VG+  VGK+ +   +   +    +     ++     ++ +   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 69  YN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKLDLR 125
               L+    +  D F++ FS+  R S+  V  + +  L+       +PV+LVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
             +           V+  +G  L   +    +IE S+    N + +F
Sbjct: 123 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 158

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  136 bits (344), Expect = 7e-41
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLW 61
           +  +   ++   +GD   GK+ ++  + +  +      T  + +   ++ +G T  + + 
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIR 59

Query: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVL 117
           + AG  D           AD  +  FSL    S++  + +   +L         G+ + L
Sbjct: 60  EEAGAPDA-----KFSGWADAVIFVFSLEDENSFQA-VSRLHGQLSSLRGEGRGGLALAL 113

Query: 118 VGT--KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           VGT  ++     +           V  A+   L   +    Y E  +    NV  VF   
Sbjct: 114 VGTQDRISASSPR----------VVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163

Query: 176 IKVVIKPPQKQK 187
            + V+   ++Q+
Sbjct: 164 AQKVVTLRKQQQ 175

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  137 bits (346), Expect = 1e-40
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 15/188 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--VFDNFSANVVAEGTTVNLGLWDTAGQE 67
           K   +GDG VGKT  +      +F  +Y  T    ++    +  +G  +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRE 126
               L+ + Y GA   +L F + SR + +N+  +W+ E Q       P+V+   K+D++ 
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
            +           ++     E+ K     Y+ E S+KT  N    F    ++    P   
Sbjct: 132 RQK----------ISKKLVMEVLKGKNYEYF-EISAKTAHNFGLPFLHLARIFTGRPDLI 180

Query: 187 KEKKKKQR 194
                   
Sbjct: 181 FVSNVNLE 188

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  136 bits (345), Expect = 1e-40
 Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 19/202 (9%)

Query: 1   MASSAS-----RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGT 54
           M++        R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 55  TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGV 113
           TV L LWDTAG E +  L P   R + V V+ + + +  S++    KWI +++      V
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDV 122

Query: 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            ++LVG K DL + +           V+  +GE   K++    +IE S+K   NVK +F 
Sbjct: 123 IIMLVGNKTDLADKRQ----------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFR 171

Query: 174 AAIKVVIKPPQKQKEKKKKQRG 195
                +      Q   ++    
Sbjct: 172 RVAAALPGMESTQDRSREDMID 193

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  136 bits (344), Expect = 1e-40
 Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 13/175 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V VGD +VGKTC++  + +  F      T+  D     +  +G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YR A+  +LA+ +  R+S+ +V   WI +++ Y    +  +L+G K DL E
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +           V+ A+ + L +       IE S+K   NV+  F      +I 
Sbjct: 149 LRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  136 bits (344), Expect = 2e-40
 Identities = 40/195 (20%), Positives = 87/195 (44%), Gaps = 22/195 (11%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLG 59
           + S + + + V +G+  VGK+ +   +        +D      D +   ++ +G +  + 
Sbjct: 31  SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATII 90

Query: 60  L---WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVP 114
           L   W+  G+ ++  L     +  D +++ +S+  RAS+E    +   +L+    +  +P
Sbjct: 91  LLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIP 147

Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
           ++LVG K DL   +           V+ ++G           +IE S+  Q NVK +F+ 
Sbjct: 148 IILVGNKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEG 196

Query: 175 AIKVVIKPPQKQKEK 189
            ++  ++  +  KEK
Sbjct: 197 IVR-QVRLRRDSKEK 210

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  134 bits (340), Expect = 2e-40
 Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V +G+G VGKT +++ Y  NKF   +I T+     +  +   G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG K+DL +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           ++H          V+  + E   + +GA  +   S+K  + ++ +F    K +I+
Sbjct: 126 ERH----------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 169

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  135 bits (341), Expect = 2e-40
 Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEG-TTVNL 58
           M+S     +K + +GD  VGKT ++  Y ++K+   Y  T+  D  +  V  +G     +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 59  GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGV 113
            +WDTAGQE +  L    YRGAD  VL + + + +S+EN+ K W  E   ++        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
           P V++G K+D  E K           V+    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 174 AAIKVVIK 181
              +  ++
Sbjct: 171 EIARSALQ 178

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  133 bits (337), Expect = 7e-40
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 15/182 (8%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGL 60
            +   +F K V +G+ AVGK+ +++ +   +F      T+     +  V  + TTV   +
Sbjct: 1   GNKICQF-KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 59

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVG 119
           WDTAGQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSG 118

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K DL   +           V   + +          ++E S+KT  NV  +F A  K +
Sbjct: 119 NKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKL 167

Query: 180 IK 181
            K
Sbjct: 168 PK 169

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  134 bits (339), Expect = 8e-40
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 8/175 (4%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V  GD AVGK+  L+    N+F  +   T+  D     ++ +G    L LWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    +R AD  +L + +    S+ N+ ++W+  ++      VP++LVG K D+R+
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRD 147

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                        V    GE+L    GA  + E S+K   N+        + V K
Sbjct: 148 TAATEGQK----CVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  133 bits (336), Expect = 1e-39
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 1   MASSAS----RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTT 55
           M+S       R  K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  T
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 56  VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVP 114
           V L LWDTAGQE +  L P   R + V V+ + + +  S+     KWI +++      V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           ++LVG K DL + +           V+T +GE   K++    +IE S+K   NVK +F
Sbjct: 122 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  132 bits (335), Expect = 1e-39
 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 19/187 (10%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLG 59
           MA  +S F K + +GDG VGK+ ++  Y +NKF T    T+  +  + ++  +G  V + 
Sbjct: 1   MAGKSSLF-KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
           +WDTAGQE +  LR   YRG+D  +L FS+    S++N+   W  E  +Y+        P
Sbjct: 60  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFP 118

Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            V++G K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ 
Sbjct: 119 FVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

Query: 175 AIKVVIK 181
           A++ V+ 
Sbjct: 168 AVRRVLA 174

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  133 bits (336), Expect = 2e-39
 Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 15/188 (7%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGL 60
             SA R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +
Sbjct: 17  RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLI 76

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVG 119
           WDTAGQE ++ L P+ YRG+   V+ + +  + S+  + KKW+ EL+ +    + + + G
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAG 135

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K DL + +           V     +E  + IGA   +E S+K   N++ +F    +  
Sbjct: 136 NKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAKNAINIEELFQGISR-Q 183

Query: 180 IKPPQKQK 187
           I P    +
Sbjct: 184 IPPLDPHE 191

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  132 bits (335), Expect = 3e-39
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V +G+  VGKT +L  +T N+F  D   T+  +  +  V+     V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            Y  +    YRGA   +L F L    +Y  V ++W+ EL  +    + V+LVG K DL +
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
            +           V T +     +  G   ++E S+    NV+  F+  +K +     KQ
Sbjct: 145 ARE----------VPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  132 bits (334), Expect = 4e-39
 Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K V +G+  VGKTC++  +T   FP     T+  D     V   G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YR A+  +L + +    S+  +  +W+ E++ Y S  V  VLVG K+DL E
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
            +           V+  + EE  +     YY+E S+K   NV+ +F      +I   ++ 
Sbjct: 146 RRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 187 K 187
            
Sbjct: 195 T 195

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  132 bits (333), Expect = 6e-39
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 18/205 (8%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLG 59
           M S     +K + +GD  VGKT ++  Y + KF   Y  T+  D  +  V+ +   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVP 114
           +WDTAGQE +  L    YRGAD  VL F + +  +++ +   W  E    +        P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 174
            V++G K+DL   +           V T + +          Y E S+K   NV+  F  
Sbjct: 120 FVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168

Query: 175 AIKVVIKPPQKQKEKKKKQRGCLLN 199
             +  +K   + +   +      L+
Sbjct: 169 IARNALKQETEVELYNEFPEPIKLD 193

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  131 bits (332), Expect = 7e-39
 Identities = 37/199 (18%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVVAEGTTVNLGL- 60
               + + V +G+  VGK+ +   +       D        D +   ++ +G +  + L 
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 61  --WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVV 116
             W+  G+ ++  L     +  D +++ +S+  RAS+E    +   +L+    +  +P++
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118

Query: 117 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
           LVG K DL   +           V+ ++G           +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV 167

Query: 177 KVVIKPPQKQKEKKKKQRG 195
           + V      +++ +++   
Sbjct: 168 RQVRLRRDSKEKNERRLAY 186

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  132 bits (333), Expect = 7e-39
 Identities = 48/187 (25%), Positives = 87/187 (46%), Gaps = 14/187 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +      + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + +  S+  V + W  +++ Y      V+LVG K D+ +
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
           ++           V++ +G +L   +G   + E S+K   NVK  F+  + V+ +   + 
Sbjct: 128 ERV----------VSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICEKMSES 176

Query: 187 KEKKKKQ 193
            +     
Sbjct: 177 LDTADPA 183

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  131 bits (332), Expect = 7e-39
 Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y      V+LVG K DL +
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           ++           V    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  131 bits (331), Expect = 7e-39
 Identities = 50/191 (26%), Positives = 94/191 (49%), Gaps = 14/191 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLG 59
           MA +     K + +GD  VGKTC+L  ++ + F + +I T+  +F    +  +G  + L 
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 118
           +WDTAGQE +  +    YRGA   +L + + +  S++N+ + WI  ++ + S  V  +++
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMIL 119

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           G K D+ + +           V+  +GE+L    G   ++E S+K   NV+  F    + 
Sbjct: 120 GNKCDVNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARD 168

Query: 179 VIKPPQKQKEK 189
           +     K  + 
Sbjct: 169 IKAKMDKNWKA 179

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  131 bits (331), Expect = 1e-38
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 25/194 (12%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-----------FDNFSANVVAEGTTVN 57
           IK + +GD  VGKT +L  YT  KF + +I TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 58  LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPV 115
           L LWDTAG E +  L    +R A  F+L F L +  S+ NV + WI +LQ +  S    +
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           VL G K DL + +           V   +  EL ++ G   Y E S+    N+    +  
Sbjct: 131 VLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-YFETSAANGTNISHAIEML 179

Query: 176 IKVVIKPPQKQKEK 189
           + +++K  ++  +K
Sbjct: 180 LDLIMKRMERSVDK 193

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  131 bits (331), Expect = 1e-38
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 17/186 (9%)

Query: 1   MASSASRF---IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTV 56
           M+S    +    K + +GD  VGK+C+L+ +  + +   YI T+  D     +  +G T+
Sbjct: 23  MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 82

Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPV 115
            L +WDTAGQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  
Sbjct: 83  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNK 141

Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           +LVG K DL   K           V     +E    +G   ++E S+K   NV+  F   
Sbjct: 142 LLVGNKCDLTTKKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTM 190

Query: 176 IKVVIK 181
              + K
Sbjct: 191 AAEIKK 196

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  131 bits (331), Expect = 1e-38
 Identities = 51/197 (25%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLG 59
           M S      K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V  +G TV L 
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 118
           +WDTAGQE +  +    YRG+   ++ + +  + S+  V K W+ E+  Y +  V  +LV
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLV 119

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           G K DL++ +           V     +E         ++E S+    NV+  F    + 
Sbjct: 120 GNKCDLKDKRV----------VEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQ 168

Query: 179 VIKPPQKQKEKKKKQRG 195
           + +   +Q   +  Q+ 
Sbjct: 169 IKESMSQQNLNETTQKK 185

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  129 bits (328), Expect = 1e-38
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 15/182 (8%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGL 60
            S+     K   +GD  VGK+ ++  +  + F  +  PT+     +  V  +       +
Sbjct: 1   GSALREL-KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 59

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVG 119
           WDTAG E +  L P+ YRG+   ++ + +    ++  + K W+ EL+ +  P + V + G
Sbjct: 60  WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAG 118

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 179
            K DL + +           V     ++    I A  ++E S+K   N+  +F    + +
Sbjct: 119 NKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRI 167

Query: 180 IK 181
             
Sbjct: 168 PS 169

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  130 bits (330), Expect = 1e-38
 Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
            K + +G+ +VGKT  L  Y  + F   ++ TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            Y  +    YRGA  F+L + + +  S+  V + W  +++ Y      V+LVG K D+ E
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           ++           V T +G+ L +Q+G   + E S+K   +V+  F+  +  +  
Sbjct: 143 ERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICD 186

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  130 bits (330), Expect = 1e-38
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
           ++ + +G   VGKT ++  +T + F      TV  +F    V   G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +N +    YR A   +L + +  + +++++  KW+  +  Y S    ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           D+           +T  QGE+  +QI    + E S+K   NV  +F   +  ++K
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  130 bits (329), Expect = 2e-38
 Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K + +GD  VGK+C+L+ +T  +F   +  T+  +  +  V  +G  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + +  R ++ ++   W+ +  QH S  + ++L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +           V   +GE   ++ G   ++E S+KT  NV+  F    K + +
Sbjct: 141 RRD----------VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR 184

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  130 bits (328), Expect = 3e-38
 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 17/200 (8%)

Query: 1   MASSASRF---IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTV 56
           M+S    +    K + +GD  VGK+C+L+ +  + +   YI T+  D     +  +G T+
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65

Query: 57  NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPV 115
            L +WDTAGQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNK 124

Query: 116 VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 175
           +LVG K DL   K           V     +E    +G   ++E S+K   NV+  F   
Sbjct: 125 LLVGNKCDLTTKKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTM 173

Query: 176 IKVVIKPPQKQKEKKKKQRG 195
              + K           ++ 
Sbjct: 174 AAEIKKRMGPGATAGGAEKS 193

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  130 bits (328), Expect = 3e-38
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +GD  VGK+ +L  +T N+F  +   T+  +  + ++  +G T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           Y R+    YRGA   +L + +    +YENV ++W+ EL+ +    + ++LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 187
           +           V T +     ++   S +IE S+    NV+  F   +  + +   +++
Sbjct: 126 RA----------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 188 EKKKKQRG 195
              +    
Sbjct: 175 IADRAAHD 182

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  129 bits (326), Expect = 4e-38
 Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLG 59
           M+ +     K + +G+   GK+C+L  +   KF  D   T+  +  S  +   G  V L 
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 118
           +WDTAGQE +  +    YRGA   +L + + SR +Y  +   W+ + +   S  + ++L 
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILC 121

Query: 119 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 178
           G K DL  D+           VT  +     ++     ++E S+ T +NV+  F    + 
Sbjct: 122 GNKKDLDADRE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARK 170

Query: 179 VIKPPQKQK 187
           ++   +  +
Sbjct: 171 ILNKIESGE 179

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  129 bits (327), Expect = 6e-38
 Identities = 66/212 (31%), Positives = 95/212 (44%), Gaps = 35/212 (16%)

Query: 1   MASSASR----FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---F--------DNF 45
           +    S      IK + +GD  VGKT  L  YT NKF   +I TV   F           
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 46  SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKW 102
                 +   V+L LWDTAGQE   R R L+   +R A  F+L F L S+ S+ NV + W
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNW 129

Query: 103 IPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 160
           + +LQ         +VL+G K DL + +           V   Q  EL  + G   Y E 
Sbjct: 130 MSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFET 178

Query: 161 SSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKK 192
           S+ T QNV+   +  + +++K  ++  EK + 
Sbjct: 179 SAATGQNVEKAVETLLDLIMKRMEQCVEKTQI 210

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  129 bits (326), Expect = 6e-38
 Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K + +G    GK+C+L  +  NKF  D   T+  +  S  V   G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   +L + + SR +Y ++   W+ + +   SP + V+L G K DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           VT  +     ++     ++E S+ T +NV+  F    + ++ 
Sbjct: 146 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILN 188

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  128 bits (324), Expect = 7e-38
 Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L  +T  KF  D   T+  +  +  +   G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           +  +    YRGA   ++ + +  R++Y ++   W+ + ++  +P   ++L+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           VT  + ++  ++ G   ++E S+KT +NV+  F  A K + +
Sbjct: 136 RD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIYQ 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  128 bits (325), Expect = 8e-38
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +GD  VGK+ +L  +T N+F  +   T+  +  + ++  +G T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
           Y  +    YRGA   +L + +    +YENV ++W+ EL+ +    + ++LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           +           V T +     ++ G   +IE S+    NV+A F   + 
Sbjct: 150 RA----------VPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILT 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  128 bits (324), Expect = 2e-37
 Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 19/202 (9%)

Query: 1   MASSASR-----FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGT 54
           M+S           K V +GD  VGK+ +L  +T N+F  D   T+  +  +  +  EG 
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 55  TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGV 113
            +   +WDTAGQE Y  +    YRGA   ++ + +   +SYEN    W+ EL+      V
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNV 119

Query: 114 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            V L+G K DL   +           V T + +   ++     + E S+   +NV   F+
Sbjct: 120 AVGLIGNKSDLAHLRA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFE 168

Query: 174 AAIKVVIKPPQKQKEKKKKQRG 195
             I  + +   K +        
Sbjct: 169 ELINTIYQKVSKHQMDLGDSSA 190

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  127 bits (321), Expect = 2e-37
 Identities = 34/183 (18%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVV----AEGTTVNLGLWD 62
           +K + VG+   GKT +L      K         TV  +     +         + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 63  TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 122
            AG+E++    P       +++  + L    +  + +K W+  ++  +   PV+LVGT L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKAVFDAAIKV 178
           D+ ++K             +   +EL  + G      Y+   +++    +  +    I  
Sbjct: 123 DVSDEKQ-------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 179 VIK 181
            + 
Sbjct: 176 SLN 178

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  127 bits (321), Expect = 3e-37
 Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 16/188 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           +K + +G+  VGK+ +L+ +T + F  +   T+  D     +  +G    L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLR 125
            +  L P  YRGA   +L + +  R ++  +   W+ EL+ Y     +  +LVG K+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
           E++           V   +G +  ++     +IE S+KT   V+  F+  ++ +I+ P  
Sbjct: 134 ENRE----------VDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 186 QKEKKKKQ 193
            + + +  
Sbjct: 183 WESENQNS 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  127 bits (322), Expect = 3e-37
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 15/187 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + +    ++ N+ K+W   +  + +    ++LVG K D+ E
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
            +           VT  QGE L K++G   +IE S+K   NV  +F    K++ +     
Sbjct: 139 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 187 KEKKKKQ 193
           K      
Sbjct: 188 KLVGVGN 194

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  126 bits (319), Expect = 4e-37
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 18/184 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEG-TTVNLGLWDTAGQ 66
           +K V +GDGA GKT +  C+    F   Y  T+  D F   +   G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVVLVGTKL 122
               ++      GA   +L + + +  S+EN+ + W   ++           V LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           DL   +           +   +     ++ G S     S+KT  +V   F      ++  
Sbjct: 126 DLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILGI 174

Query: 183 PQKQ 186
              +
Sbjct: 175 KLNK 178

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  125 bits (317), Expect = 6e-37
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRE 126
            +  +    YRGA   +L + +    ++ N+ K+W   +  + +    ++LVG K D+ E
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +           VT  QGE L K++G   +IE S+K   NV  +F    K++ +
Sbjct: 122 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  124 bits (313), Expect = 3e-36
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 15/181 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTD-YIPTV-FDNFSANVVAEGTTVNLGLWDTAGQ 66
            K + VGD  VGKTC+L+ +    F    +I TV  D  +  +  +G  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +    YR A   +L + + ++AS++N+ + W+ E+  Y    V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
            ++           V    GE+L K+ G   ++E S+KT  NV   F A  K + +   K
Sbjct: 130 HERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKRRSMK 178

Query: 186 Q 186
            
Sbjct: 179 A 179

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  125 bits (315), Expect = 4e-36
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 21/191 (10%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLI--CYTSNKFPTDYIPTV-FDNFSANVVAEGTTVN 57
           +  +A+   K   VG+  VGK+ ++       +KF  DY  T   +   A V    TTV+
Sbjct: 13  IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72

Query: 58  LGLW--DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSP 111
           + L+  DTAG + Y       + G    +L F + S  S+E+  K W   L+        
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRER 131

Query: 112 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK-TQQNVKA 170
            +  VLV  K DL   +H          V     ++         + + S+    ++  A
Sbjct: 132 PLRAVLVANKTDLPPQRH---------QVRLDMAQDWATTNTLD-FFDVSANPPGKDADA 181

Query: 171 VFDAAIKVVIK 181
            F +      +
Sbjct: 182 PFLSIATTFYR 192

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  118 bits (299), Expect = 6e-34
 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 25/179 (13%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
            K + +GD  VGKTC+   + + +FP     T+  D     V  +G  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 68  DYNRLR----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTK 121
              R R       YR     V  + + + AS+ ++   WI E + +     +P +LVG K
Sbjct: 81  ---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK 136

Query: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ---QNVKAVFDAAIK 177
            DLR              V T   ++           E S+K      +V+A+F     
Sbjct: 137 CDLRSAIQ----------VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAH 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  117 bits (295), Expect = 1e-33
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLRE 126
            +  L P  YR A   ++ + +    S+    + W+ EL    S  + + LVG K+D  +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
           +            V   +GE+L ++ G   + E S+KT +NV  VF
Sbjct: 123 EGGERK-------VAREEGEKLAEEKGL-LFFETSAKTGENVNDVF 160

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  122 bits (306), Expect = 1e-32
 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 24/197 (12%)

Query: 2   ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV---------AE 52
           A    + IK   +GDG  GKT +L       F      T   N                E
Sbjct: 35  ALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE 94

Query: 53  GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 112
                   WD  GQE  +         + V++L        +  N    W+  ++ Y   
Sbjct: 95  LKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-KHYWLRHIEKYGGK 150

Query: 113 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 172
            PV++V  K+D     +          +   +  E    I    +   S K    V+++ 
Sbjct: 151 SPVIVVMNKIDENPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIA 199

Query: 173 DAAIKVVIKPPQKQKEK 189
            +    V+ P       
Sbjct: 200 KSLKSAVLHPDSIYGTP 216

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  110 bits (276), Expect = 2e-30
 Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 52/210 (24%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV---------------------------- 41
           K V +G+ +VGK+ +++  T + F  +   T+                            
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68

Query: 42  ----------FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 91
                       N   N       +   +WDTAGQE Y  + PL YRGA   ++ F + +
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128

Query: 92  RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 151
             + +   K W+ +L+       ++LV  K+D  + +           V   + ++  + 
Sbjct: 129 SNTLDRA-KTWVNQLKIS-SNYIIILVANKIDKNKFQ-----------VDILEVQKYAQD 175

Query: 152 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                +I+ S+KT  N+K +F    + + K
Sbjct: 176 NNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 65.0 bits (158), Expect = 5e-13
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 28/177 (15%)

Query: 20  GKTCMLICYTSNKFPTD-----YIPTVFDNFSANVVAEGTTVNLGL----WDTAGQEDY- 69
              C +      +F  D     +  T    +     A        L     D  G E   
Sbjct: 92  CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDF 151

Query: 70  -NRLRPLSYRGADVFVLAF--SLVSRASYENVLKKWIPE-LQHYSP-GVPVVLVGTKLDL 124
             +  P      D F+L    S     ++++   K++       +    P+V+V TK D 
Sbjct: 152 EQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
             +++          +  A    L K+      +E S+++  NV   F   ++++ K
Sbjct: 211 GVERY----------IRDAHTFALSKK-NLQV-VETSARSNVNVDLAFSTLVQLIDK 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 43/194 (22%), Positives = 65/194 (33%), Gaps = 37/194 (19%)

Query: 9   IKCVTVGDGAVGKTCML----------ICYTSNKFPTDYIPTVFDNFSANVVA--EGTTV 56
            K V  G G  GKT  L                   T+   T+F +F    +   +G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 57  NLGLWDTAGQEDYNRLRPLSYRGAD--VFVL----AFSLVSRASYENVLKKWIPELQHYS 110
              L+   GQ  YN  R L  RG D  VFV          +  S  N +++ + E     
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN-MRENLAEYGLTL 133

Query: 111 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---YYIECSSKTQQN 167
             VP+V+   K DL          P  +PV     E +R  +        +E  +   + 
Sbjct: 134 DDVPIVIQVNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKG 178

Query: 168 VKAVFDAAIKVVIK 181
           V        ++V+ 
Sbjct: 179 VFETLKEVSRLVLA 192

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           K + +G    GK+ M     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 67  EDY-----NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVG 119
           + +      + +   ++   V +  F + S    +++    K + +L+ YSP   + ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 120 TKLDLREDKH 129
            K+DL +   
Sbjct: 123 HKMDLVQLDK 132

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 9/128 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
            + + +G    GK+ +         P +      T       + ++  + VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 66  QEDYNRL---RPLSYRGADVFVLAFSLVSRASYE-NVLKKWIPELQHYSPGVPVVLVGTK 121
           Q D+        + +RG    +               L   + +    +P +   +   K
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138

Query: 122 LDLREDKH 129
           +D   D H
Sbjct: 139 VDGLSDDH 146

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 14  VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR 73
           +G    GK+ +      N  P D    +    + ++    T ++L + +  GQ +Y    
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63

Query: 74  PLS---YRGADVFVLAFSLVSRASYENV---LKKWIPELQHYSPGVPVVLVGTKLDL 124
             S   ++     V      S+  Y N    L   I      +P + + ++  K+D 
Sbjct: 64  YDSERLFKSVGALVYVID--SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 44/186 (23%), Positives = 68/186 (36%), Gaps = 62/186 (33%)

Query: 14  VG-DGAVGKTCMLICYTSNKFPTDYIPTV--------FDNFSANVVAEGTTVNLGLWDTA 64
           VG   + GKT  +    S +F  D IPTV          N +  +           WD  
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKL-----------WDIG 75

Query: 65  GQEDYNRLRPL---SYRGAD--VFVLAFS-----LVSRASYENVLKKWIPELQHYSPGVP 114
           GQ    R R +     RG    V+++  +       S+    N+L K  P+LQ    G+P
Sbjct: 76  GQP---RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIP 126

Query: 115 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS------YYI-ECSSKTQQN 167
           V+++G K DL          PG +       +EL +++  S            S K + N
Sbjct: 127 VLVLGNKRDL----------PGALDE-----KELIEKMNLSAIQDREICCYSISCKEKDN 171

Query: 168 VKAVFD 173
           +     
Sbjct: 172 IDITLQ 177

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 28/172 (16%)

Query: 16  DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL 75
           D A GKT +L     ++    ++PT+    S  +   G  +    +D  G     + R +
Sbjct: 34  DNA-GKTTLLHMLKDDRLGQ-HVPTLHPT-SEELTIAG--MTFTTFDLGGHI---QARRV 85

Query: 76  ---SYRGAD--VFVLAFS-----LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125
                   +  VF++  +     L S+   ++++      +      VP++++G K+D  
Sbjct: 86  WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD--ETIA----NVPILILGNKIDRP 139

Query: 126 E--DKHYLADHPGLVPVTTAQGEELRKQIGA-SYYI-ECSSKTQQNVKAVFD 173
           E   +  L +  GL   TT +G    K++ A    +  CS   +Q     F 
Sbjct: 140 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.98
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.98
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.9
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.88
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.86
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.84
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.82
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.81
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.81
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.81
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.8
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.79
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.78
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.78
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.76
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.74
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.74
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.74
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.74
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.73
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.71
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.71
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.7
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.69
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.68
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.67
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.61
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.57
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.56
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.52
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.51
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.48
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.46
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.43
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.4
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.38
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.38
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.34
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.77
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.71
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.69
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.61
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.61
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.6
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.51
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.39
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.35
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.28
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.14
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.14
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.0
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.93
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.84
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.81
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.71
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.49
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.44
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.35
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.34
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.32
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.25
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.23
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.15
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.15
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.13
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.12
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.11
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.1
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.1
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.07
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.05
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.05
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.05
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.04
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.03
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.01
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.99
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.98
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.96
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.96
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.96
1via_A	175	Shikimate kinase; structural genomics, transferase	96.95
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.94
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.92
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.92
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.9
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.9
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.9
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.9
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.88
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.87
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.87
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.86
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.84
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.83
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.83
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.83
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.81
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.81
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.8
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.79
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.78
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.78
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.77
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.77
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.76
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.76
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.75
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.74
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.73
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.73
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.73
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.72
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.72
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.72
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.71
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.7
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.7
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.7
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.69
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.69
1g6h_A	257	High-affinity branched-chain amino acid transport	96.68
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.66
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.66
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.65
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.65
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.65
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.64
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.63
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.63
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.62
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.61
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.6
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.59
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.59
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.59
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.58
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.58
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.57
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.56
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.55
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.55
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.53
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.51
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.49
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.49
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.48
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.48
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.48
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.47
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.45
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.44
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.43
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.43
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.42
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.42
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.41
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.4
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.39
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.38
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.38
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.37
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.35
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.34
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.33
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.32
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.31
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.3
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.3
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.3
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.29
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.29
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.29
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.29
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.27
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.27
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.25
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.25
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.25
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.24
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.23
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.21
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.19
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.19
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.17
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.14
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.13
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.12
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.12
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.07
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.06
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.04
3bos_A	242	Putative DNA replication factor; P-loop containing	96.03
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.02
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.99
2og2_A	359	Putative signal recognition particle receptor; nuc	95.97
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.92
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.9
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.89
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.89
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.87
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.85
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.82
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.82
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.82
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.81
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.8
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.79
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.78
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.77
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.72
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.72
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.69
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.68
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.68
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.68
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.67
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.6
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.59
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.57
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.56
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.56
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.51
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.49
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.48
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.47
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.46
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.45
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.45
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.42
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.41
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.36
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.35
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.32
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.27
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.26
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.25
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.25
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.23
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.23
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.2
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.19
3co5_A	143	Putative two-component system transcriptional RES	95.16
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.16
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.14
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.13
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.11
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.11
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.11
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.1
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.1
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.08
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.07
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	95.03
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.03
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.02
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.02
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.01
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.0
2qgz_A	308	Helicase loader, putative primosome component; str	95.0
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	94.99
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.99
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.98
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.97
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.94
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.88
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	94.87
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.86
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.85
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.85
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.83
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	94.8
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.8
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.78
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	94.78
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.78
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	94.77
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	94.77
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.77
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.71
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.71
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.71

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1e-40  Score=251.04  Aligned_cols=165  Identities=30%  Similarity=0.515  Sum_probs=139.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+.+||+|+|++|||||||+++|..+.|...+.||.+.++ .....+++..+.+.+|||+|+++|+.+++.+++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            4679999999999999999999999999999999998665 446778899999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++++|+++ ..|+..+.... +++|++|||||+|+...+.          +..+++.++++++++ +|++|||+
T Consensus        91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk  158 (216)
T 4dkx_A           91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK  158 (216)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence            99999999999998 78888776654 7899999999999987765          899999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      +|.||+++|+.|++.+...
T Consensus       159 tg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          159 AGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             TTBSHHHHHHHHHHHC---
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999988643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-37  Score=231.29  Aligned_cols=198  Identities=75%  Similarity=1.239  Sum_probs=154.3

Q ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      .|+..+.+||+++|++|||||||+++|..+.+...+.||.+..+...+.+++..+.+.+||+||+++|..++..+++++|
T Consensus         3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   82 (212)
T 2j0v_A            3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD   82 (212)
T ss_dssp             CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred             CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence            36667889999999999999999999999998888888988877777778888999999999999999999999999999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|+|||++++.++.++...|+..+....+++|+++|+||+|+.........  ....+..+++..++..++..+++++|
T Consensus        83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           83 IFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            9999999999999999855899998887778999999999999765431111  11135788899999999876899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCccchh----hhhhcCCCeEEEEe
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLNVF  201 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~c~~~~~  201 (210)
                      |+++.|++++|+++++.+.....++.    .++++.+.|.++..
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~  204 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIASI  204 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC-----------------------
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEehH
Confidence            99999999999999999988765443    23334457877643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5.3e-35  Score=216.38  Aligned_cols=172  Identities=43%  Similarity=0.796  Sum_probs=154.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+++|.+|||||||+++|.++.+...+.||.+..+.....+++..+.+.+||+||++++..++..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            45679999999999999999999999999888899998888878888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||++++.++.++...|+..+....+++|+++|+||+|+....        ...+..+++..++..++..+++++||++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999997678999988877889999999999997531        1127788999999999985599999999


Q ss_pred             CCCHHHHHHHHHHHHhCCcc
Q 028362          165 QQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +.|++++|+++.+.+.....
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999987643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=219.53  Aligned_cols=181  Identities=30%  Similarity=0.464  Sum_probs=144.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      |...+.+||+|+|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            44567899999999999999999999999998888888888776666777888999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +++|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++...+. +++++
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  166 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES  166 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 68888777653  5799999999999987654          788899999999997 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCCccchhhhhhcCCCeEEE
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  199 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~~  199 (210)
                      ||+++.|++++|+++.+.+......    .+++++|.+|
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~  201 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIARVENS----YGQERRCHLM  201 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence            9999999999999999999766433    3345557664

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=7.1e-36  Score=218.51  Aligned_cols=180  Identities=81%  Similarity=1.326  Sum_probs=135.1

Q ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      ||+.++.+||+++|++|||||||++++..+.+...+.||.+..+.....+++..+.+.+||+||++++...+..+++++|
T Consensus         2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            56778889999999999999999999999988888888887766555566778889999999999999999999999999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++++|||++++.+++.+...|+..+....+++|+++|+||+|+...............+..+++..++..++..+++++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  161 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS  161 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            99999999999999998557999888877789999999999997654311112222335788899999999866899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++.+.+.+
T Consensus       162 a~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          162 SKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.7e-35  Score=216.51  Aligned_cols=181  Identities=34%  Similarity=0.559  Sum_probs=147.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            56799999999999999999999999988888888877777778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+....           +..+.+..++..++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999987 67777776643  589999999999997543           678889999999986 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCccc-----hhhhhhcCCCeEEE
Q 028362          164 TQQNVKAVFDAAIKVVIKPPQK-----QKEKKKKQRGCLLN  199 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~~~-----~~~~~~~~~~c~~~  199 (210)
                      ++.|++++|+++.+.+....+.     ...+++++.+|+++
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            9999999999999988755432     22334445567764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=4.9e-35  Score=220.12  Aligned_cols=181  Identities=36%  Similarity=0.649  Sum_probs=150.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ....+||+|+|++|||||||+++|..+.+...+.||.+..+.....+++..+.+.+||++|+++|..++..+++++|++|
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            34679999999999999999999999999988899998888777778888999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||+++++++..+...|+..+....+++|+++|+||+|+..+.....  .......+..+++..++..++..+++++||
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  183 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA  183 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence            999999999999955899999988888999999999999976310000  000112278899999999999768999999


Q ss_pred             CCCCC-HHHHHHHHHHHHhCCccc
Q 028362          163 KTQQN-VKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       163 ~~~~~-i~~~~~~i~~~~~~~~~~  185 (210)
                      +++.| ++++|+++++.+......
T Consensus       184 ~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          184 FTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TTCHHHHHHHHHHHHHHHHC----
T ss_pred             CCCcccHHHHHHHHHHHHhccCcC
Confidence            99998 999999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.3e-35  Score=215.59  Aligned_cols=178  Identities=51%  Similarity=0.963  Sum_probs=151.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+.+||+++|++|||||||+++|..+.+...+.||.+..+...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            33477999999999999999999999999888888888877776777788889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||+++++++..+...|+..+....+++|+++|+||+|+........  .......+..+++..++..++..+++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999985589888888777899999999999976421000  00111236788999999999876899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++++.+..
T Consensus       174 a~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99999999999999998875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.2e-35  Score=212.71  Aligned_cols=173  Identities=32%  Similarity=0.566  Sum_probs=148.5

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+......+||+++|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            5566678899999999999999999999999888777888766654 456778889999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|++++|||++++.++..+ ..|+..+....+++|+++|+||+|+.....          +..+++..++...+. ++++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~  149 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFE  149 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEE
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEE
Confidence            9999999999999999997 789888888778999999999999987654          677889999999987 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCCccc
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      +||+++.|++++|+++.+.+......
T Consensus       150 ~Sa~~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          150 TSAKENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988765433

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.8e-34  Score=211.54  Aligned_cols=180  Identities=61%  Similarity=1.044  Sum_probs=153.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +.+.+||+++|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+|+++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            35689999999999999999999999998888888888777777888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++.++...|+..+....+++|+++|+||+|+........  .......+..+++..++..++..+++++||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            999999999999985579888887777899999999999976421000  000112367788899999988768999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +++.|++++|+++.+.+.+...
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCCC
T ss_pred             CCccCHHHHHHHHHHHHhcccc
Confidence            9999999999999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=9.1e-35  Score=213.49  Aligned_cols=179  Identities=37%  Similarity=0.700  Sum_probs=150.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      .....+||+++|++|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||+||++.|..++..+++.+|++
T Consensus         3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45678999999999999999999999999988888998888777777888899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||++++.++.++...|+..+....++.|+++|+||+|+........  .......+..+++..++..++..+++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999876689888887777899999999999975311000  00111237788899999998866999999


Q ss_pred             cC-CCCCHHHHHHHHHHHHhCC
Q 028362          162 SK-TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~-~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+ ++.|++++|+++.+.+.++
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHTC
T ss_pred             ecCCCcCHHHHHHHHHHHHhcC
Confidence            99 6899999999999988753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.8e-34  Score=211.07  Aligned_cols=169  Identities=27%  Similarity=0.411  Sum_probs=149.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+.+||+++|++|||||||+++|..+.+...+.++....+......++..+.+.+||+||++++..++..+++.+|++
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY   81 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence            45678999999999999999999999998888888998888877788899999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||++++++++.+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  149 (181)
T 3t5g_A           82 ILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESS  149 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEEe
Confidence            999999999999998 67877765543  5899999999999976654          788999999999987 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |+++.|++++|+++.+.+.....
T Consensus       150 a~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          150 AKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTC--
T ss_pred             cCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999987653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=6.1e-35  Score=218.24  Aligned_cols=181  Identities=37%  Similarity=0.701  Sum_probs=149.5

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA   80 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   80 (210)
                      |+......+||+++|++|||||||+++|..+.+...+.||....+...+.+++..+.+.+||++|++.|..++..+++++
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  100 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS  100 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCC
Confidence            55555678999999999999999999999999988888998888776777788899999999999999999999999999


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +++|+|||++++.++.++...|+..+....++.|+++|+||+|+........  .......+..+++..+++.++..+++
T Consensus       101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  180 (205)
T 1gwn_A          101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI  180 (205)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999876689888887777899999999999975311000  00111236788899999998866899


Q ss_pred             EeccC-CCCCHHHHHHHHHHHHhC
Q 028362          159 ECSSK-TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       159 ~~Sa~-~~~~i~~~~~~i~~~~~~  181 (210)
                      ++||+ ++.|++++|+++++.+.+
T Consensus       181 e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          181 ECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHHHHhh
Confidence            99999 689999999999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=216.08  Aligned_cols=165  Identities=30%  Similarity=0.539  Sum_probs=148.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.++|+|+|++|||||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            34579999999999999999999999998888888888877777888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++||
T Consensus        91 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  158 (206)
T 2bov_A           91 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA  158 (206)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeC
Confidence            99999999999997 78888777655  4899999999999987654          778889999998887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++.|++++|+++.+.+..
T Consensus       159 ~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          159 KTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.8e-35  Score=215.75  Aligned_cols=170  Identities=28%  Similarity=0.591  Sum_probs=119.9

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+......+||+++|++|||||||+++|..+.+...+.|+.+.++. ..+.+++..+.+.+||+||++++..++..++++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            6666678899999999999999999999998887777787776654 456678899999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +|++|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++..++..++. +++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~  148 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFM  148 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEE
T ss_pred             CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEE
Confidence            9999999999999999987 67888877664 6899999999999976543          678889999999987 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|.++.+.+.+.
T Consensus       149 ~~Sa~~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          149 ETSAKANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             ECCC---CCHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=214.23  Aligned_cols=179  Identities=51%  Similarity=0.855  Sum_probs=143.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+.+||+++|++|||||||+++|.++.+...+.||....+...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            34578999999999999999999999998888888888887777788899999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      |+|||++++.++.++...|+..+....+++|+++|+||+|+........  .......+..+++..++..++..+++++|
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  175 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS  175 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence            9999999999999985579988888777999999999999976421000  00011236788899999998877899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++.+.+.+.
T Consensus       176 a~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          176 ALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999988644

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=210.94  Aligned_cols=165  Identities=23%  Similarity=0.423  Sum_probs=142.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.+|.+..+.....+++..+.+.+||++|+++++.+ ..++++++++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            345779999999999999999999999998888899998888777788999999999999999998875 6789999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      ++|||+++++++..+ ..|+..+....    .++|+++|+||+|+.....          +..+++.+++..++. ++++
T Consensus        96 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e  163 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFE  163 (187)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEE
Confidence            999999999999998 68888777653    5899999999999976554          788899999999997 8999


Q ss_pred             ecc-CCCCCHHHHHHHHHHHHhC
Q 028362          160 CSS-KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa-~~~~~i~~~~~~i~~~~~~  181 (210)
                      +|| +++.|++++|+++++.+.+
T Consensus       164 ~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          164 VSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             EeecCccccHHHHHHHHHHHHhh
Confidence            999 8999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=9e-34  Score=211.66  Aligned_cols=170  Identities=29%  Similarity=0.578  Sum_probs=148.6

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+......+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            6655678899999999999999999999999988888888876664 356678889999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +|++|+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....          +..+++..++...+. +++
T Consensus        81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  148 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL  148 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred             CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence            9999999999999999997 67888887665 6899999999999976544          677888999988886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|.++.+.+...
T Consensus       149 ~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          149 ETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=6.7e-34  Score=207.58  Aligned_cols=170  Identities=31%  Similarity=0.517  Sum_probs=148.2

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA   80 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   80 (210)
                      |.....+.+||+++|.+|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++.+
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            44445678999999999999999999999999888888998888777788899999999999999999999999999999


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      |++++|||++++.++..+ ..|+..+ .... .++|+++|+||+|+.....          +..+++..++...+. +++
T Consensus        82 d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~  149 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYF  149 (181)
T ss_dssp             SEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred             CEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEE
Confidence            999999999999999987 5776665 4333 5899999999999987654          678888999988886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       150 ~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          150 EASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999988654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=5.8e-34  Score=214.17  Aligned_cols=177  Identities=44%  Similarity=0.863  Sum_probs=131.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|.++.+...+.|+....+.....+++..+.+.+||+||++++..++..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            46799999999999999999999999888888888887777778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.++..+...|+..+....+++|+++|+||+|+........  .......+..+++..+++.++..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            99999999999985579988888778899999999999976531000  0001123677888999999987789999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.|++++|+++.+.+...
T Consensus       192 ~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.9e-34  Score=209.43  Aligned_cols=166  Identities=20%  Similarity=0.297  Sum_probs=139.1

Q ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      ||...+.+||+++|++|||||||+++|.++.+.. +.||.+..+...+.+++..+.+.+||++|+++     ..+++++|
T Consensus         1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            4666788999999999999999999999998876 67888777777788899999999999999987     35788899


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhcc---C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ++|+|||+++++++..+ ..|+..+...   . +++|+++|+||+|+....        ...+..+++..++...+..++
T Consensus        75 ~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~  145 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSY  145 (178)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEE
T ss_pred             EEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeE
Confidence            99999999999999997 6765544432   2 589999999999995321        012678888999988755689


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++||+++.|++++|+++++.+...
T Consensus       146 ~~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          146 YETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=5.5e-34  Score=208.80  Aligned_cols=165  Identities=32%  Similarity=0.510  Sum_probs=147.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+|+|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++.+..++..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45679999999999999999999999998888889988888777888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||+++++++..+ ..|+..+...  ..++|+++|+||+|+.....          +..+++..++..++. +++++||
T Consensus        95 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  162 (183)
T 3kkq_A           95 IVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSA  162 (183)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEecc
Confidence            99999999999988 6777766543  26899999999999977554          788899999999996 8999999


Q ss_pred             C-CCCCHHHHHHHHHHHHhC
Q 028362          163 K-TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~-~~~~i~~~~~~i~~~~~~  181 (210)
                      + ++.|++++|+++.+.+.+
T Consensus       163 ~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          163 KDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SSSCBSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            9 999999999999988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=8.1e-34  Score=204.54  Aligned_cols=163  Identities=27%  Similarity=0.518  Sum_probs=144.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46999999999999999999999999888888888887777777788899999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.++..+ ..|+..+...  ..+.|+++|+||+|+.....          +..+++..+++.++..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999987 6677666554  25899999999999977654          6788889999888545899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028362          165 QQNVKAVFDAAIKVVI  180 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~  180 (210)
                      +.|++++|+++.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.1e-33  Score=207.87  Aligned_cols=164  Identities=22%  Similarity=0.338  Sum_probs=141.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.|+. ..+...+.+++..+.+.+||++|++.++     +++++|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            45678999999999999999999999999988878874 4556778889999999999999999887     78889999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||++++.+++.+ ..|+..+....  .++|+++|+||+|+....        ...+..+++..++..++..+++++|
T Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence            999999999999998 67988887764  589999999999995321        1127888999999999856999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++++.+...
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.7e-33  Score=203.59  Aligned_cols=165  Identities=32%  Similarity=0.591  Sum_probs=138.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|++|||||||+++|..+.+...+.++.+..+. ....+++..+.+.+||+||++++...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            457899999999999999999999999888777888876654 4566788889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      ++|+|++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999987 68887776654 5799999999999977654          678889999999886 8899999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++.|++++|+++.+.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=8e-34  Score=208.36  Aligned_cols=170  Identities=27%  Similarity=0.518  Sum_probs=148.2

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+....+.+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..++++
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            555567789999999999999999999999998888788877655 4456778888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++...+. +++
T Consensus        83 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (186)
T 2bme_A           83 AAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFL  150 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEE
T ss_pred             CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEE
Confidence            9999999999999999987 68887776654 6899999999999976544          677888999998886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          151 ETSALTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.1e-33  Score=203.76  Aligned_cols=164  Identities=30%  Similarity=0.539  Sum_probs=143.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|.++.+...+.++....+......++..+.+.+||+||++++..++..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            35799999999999999999999999888888888887777777889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||+++++++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1u8z_A           82 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAK  149 (168)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCC
Confidence            9999999999987 67877776654  4899999999999977654          678889999998886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+
T Consensus       150 ~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          150 TRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             TCTTHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.6e-33  Score=208.58  Aligned_cols=176  Identities=47%  Similarity=0.869  Sum_probs=151.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ...+||+++|.+|||||||+++|..+.+...+.|+.+..+...+.+++..+.+.+||+||++++..++..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            46799999999999999999999999988888888887776677888999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||+++++++..+...|+..+....+++|+++|+||+|+........  .......+..+++..++...+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            99999999999886788888887777899999999999976521000  0011123677889999999987789999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.2e-33  Score=209.02  Aligned_cols=179  Identities=46%  Similarity=0.852  Sum_probs=146.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ....+||+++|.+|||||||+++|..+.+...+.|+....+...+.+++..+.+.+||+||++++..++..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            35678999999999999999999999998888888887777667778899999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++..+...|+..+....+++|+++|+||+|+.........  ......+..+++..++...+..+++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            9999999999998867888888877778999999999999765210000  00111267788899999988778999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +++.|++++|+++.+.+....
T Consensus       182 ~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999988653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=208.99  Aligned_cols=169  Identities=30%  Similarity=0.598  Sum_probs=148.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+..++..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            3346799999999999999999999999988888888766654 457778899999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus        92 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  159 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETS  159 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence            9999999999999998 67888887765 5899999999999977654          778889999999987 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |+++.|++++|+++.+.+.....
T Consensus       160 a~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          160 AKNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=212.55  Aligned_cols=167  Identities=31%  Similarity=0.515  Sum_probs=139.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+|+|++|||||||+++|..+.+...+.+|.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            45679999999999999999999999998887788876665 44567788889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+...+.          +..+++.+++..++..+++++||
T Consensus       106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A          106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeC
Confidence            999999999999987 68888877765 6899999999999987544          67888999999988768999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++++.+.+.
T Consensus       175 ~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988643

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-34  Score=211.67  Aligned_cols=164  Identities=26%  Similarity=0.469  Sum_probs=143.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ...++|+++|++|||||||+++|..+.+...+.|+....+......++..+.+.+||+||++++..++..+++.+|++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            46799999999999999999999999988888888877776667788899999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |||++++.++..+ ..|+..+....   +++|+++|+||+|+....           +..+++..++..++. +++++||
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (199)
T 2gf0_A           86 VFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETSA  152 (199)
T ss_dssp             EEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEec
Confidence            9999999999887 56665555432   478999999999997633           577888889988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++.+.+...
T Consensus       153 ~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          153 KMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             TTTBSHHHHHHHHHHHCSSS
T ss_pred             CCCCCHHHHHHHHHHHHhhh
Confidence            99999999999999988655

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=209.97  Aligned_cols=166  Identities=32%  Similarity=0.585  Sum_probs=146.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            34679999999999999999999999998888888877665 34567788999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus       103 i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  170 (201)
T 2ew1_A          103 ILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSA  170 (201)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999987 78888887765 5799999999999976544          678888899988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++.+.+...
T Consensus       171 ~~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          171 KESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.3e-33  Score=201.76  Aligned_cols=164  Identities=30%  Similarity=0.544  Sum_probs=143.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|++|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35779999999999999999999999988877777776665 34566788899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      ++|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999987 68877776654 7899999999999976543          677888899988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHh
Q 028362          163 KTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~  180 (210)
                      +++.|++++|+++.+.+.
T Consensus       151 ~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          151 KTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTCTTHHHHHHHHHHTSC
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=4.1e-33  Score=203.61  Aligned_cols=167  Identities=32%  Similarity=0.559  Sum_probs=144.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            456799999999999999999999999888777777766553 4566788899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  156 (181)
T 2efe_B           89 IIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSA  156 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCS
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999999987 68888777665 6899999999999976544          678889999998886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +++.|++++|+++.+.+...+
T Consensus       157 ~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          157 KTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SSCTTHHHHHHHHHHTCC---
T ss_pred             CCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999998876543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3.5e-33  Score=201.39  Aligned_cols=164  Identities=34%  Similarity=0.547  Sum_probs=144.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ++.+||+++|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            5679999999999999999999999988888788876555 445667888999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||++++.++..+ ..|+..+....++.|+++|+||+|+.....          +..+++..++...+. +++++||++
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1z2a_A           83 LVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKE  150 (168)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecCC
Confidence            99999999999887 678877766557899999999999976543          678888999999887 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      +.|++++|+++.+.+.+
T Consensus       151 ~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          151 DLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TBSSHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=2.4e-33  Score=209.29  Aligned_cols=175  Identities=61%  Similarity=1.054  Sum_probs=148.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+++|.+|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++++...+..+++++|+++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            35679999999999999999999999999888889888887777888899999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++.++...|+..+....+++|+++|+||+|+........  .......+..+++..++..++..+++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            999999999999985589999888778899999999999976532110  011122267788999999999878999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 028362          163 KTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~  179 (210)
                      +++.|++++|+++.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=8.2e-33  Score=199.82  Aligned_cols=164  Identities=26%  Similarity=0.520  Sum_probs=145.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|++|||||||+++|.++.+...+.++.+.++. ....+++..+.+.+||+||++++...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            457899999999999999999999999988877888876653 4567788889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      ++|||++++.++..+ ..|+..+.... +.+|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999987 78888887764 7899999999999987554          678888999988886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHh
Q 028362          163 KTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~  180 (210)
                      +++.|++++|+++.+.+.
T Consensus       151 ~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          151 KNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=8.1e-33  Score=203.83  Aligned_cols=165  Identities=32%  Similarity=0.632  Sum_probs=145.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            446799999999999999999999999988777888776654 3466788899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.....          +..+++..++..++. +++++||
T Consensus        99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  166 (189)
T 2gf9_A           99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA  166 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999887 68888887765 6899999999999976544          677889999999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++.|++++|+++.+.+.+
T Consensus       167 ~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          167 KENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-33  Score=209.39  Aligned_cols=168  Identities=30%  Similarity=0.521  Sum_probs=139.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||+++|..++..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            46799999999999999999999999988777788776654 35677888899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++.++..+ ..|+..+.... .++|++||+||+|+.....          +..+++..++...+. +++++||+
T Consensus        91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  158 (223)
T 3cpj_B           91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSAL  158 (223)
T ss_dssp             EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCCC
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999997 78888887664 5899999999999976544          677888999998886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCccc
Q 028362          164 TQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      ++.|++++|+++.+.+......
T Consensus       159 ~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTTCC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998865443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=2.9e-33  Score=206.62  Aligned_cols=166  Identities=29%  Similarity=0.568  Sum_probs=142.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++++..++..+++++|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            3457799999999999999999999999888777777765553 456778889999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          +..+++..++...+. +++++|
T Consensus        97 ii~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  164 (191)
T 2a5j_A           97 ALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETS  164 (191)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999987 67888777654 6899999999999976544          678889999999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++.+.+.+
T Consensus       165 a~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          165 AKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.7e-33  Score=202.74  Aligned_cols=166  Identities=30%  Similarity=0.585  Sum_probs=145.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ...+.+||+++|.+|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            345679999999999999999999999988877778776655 3456678889999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +++|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++.+++..++. +++++|
T Consensus        91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  158 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEAS  158 (179)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECC
T ss_pred             EEEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999887 78888777665 6899999999999976544          678889999999886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++.+.+.+
T Consensus       159 a~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          159 AKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHhh
Confidence            99999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=203.27  Aligned_cols=164  Identities=23%  Similarity=0.352  Sum_probs=128.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc--ccccCcccccCccEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGADVF   83 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~   83 (210)
                      .+.+||+++|++|||||||+++|.++.+...+.+...+.+...+.+++..+.+.+||+||++.  +..++..+++.++++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            467999999999999999999999887765433332333455677889999999999999987  566777788999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||++++.++..+ ..|+..+....  +++|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999987 67877776643  5899999999999976544          677888888888886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |++|.|++++|+++.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998854

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-33  Score=200.47  Aligned_cols=166  Identities=31%  Similarity=0.536  Sum_probs=143.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +.+||+++|++|||||||+++|.++.+...+.|+.+.++ .....+++..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999998887788877665 3456778899999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |+|++++.++.++ ..|+..+.... ++.|+++|+||+|+.....       ...+..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999987 67887776654 6899999999999976521       122677888899988886 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      +.|++++|+++.+.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CTTHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999887643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=3.7e-33  Score=201.14  Aligned_cols=161  Identities=21%  Similarity=0.358  Sum_probs=119.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|.+..+. ...++.+..+.....+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999999876553 3345556666667788999999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |+++++++..+ ..|+..+....  +++|+++|+||+|+.+...          +..+++..++...+. +++++||+++
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  148 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence            99999999998 67776666543  6899999999999987654          788889999999886 8999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 028362          166 QNVKAVFDAAIKVVIK  181 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~  181 (210)
                      .|++++|+++.+.+..
T Consensus       149 ~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          149 HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.4e-33  Score=209.28  Aligned_cols=170  Identities=30%  Similarity=0.546  Sum_probs=140.5

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |+....+.+||+|+|++|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..++++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            666677889999999999999999999999998888788876555 4456677888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      +|++|+|||++++.++..+ ..|+..+....     .++|+++|+||+|+....           +..+++..++.....
T Consensus        81 ~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~  148 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNN  148 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTS
T ss_pred             CcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCC
Confidence            9999999999999999887 67777665443     478999999999997432           567788888874444


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .+++++||+++.|++++|+++.+.+.+.
T Consensus       149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          149 IPYFETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999988653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-32  Score=200.59  Aligned_cols=167  Identities=33%  Similarity=0.605  Sum_probs=137.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      ..++.+||+++|++|||||||+++|..+.+. ..+.++.+.++.. ...+++..+.+.+||+||++.+...+..+++++|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999998874 4566777666544 4567889999999999999999999999999999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      ++++|+|++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..++. +++++
T Consensus        86 ~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  153 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMET  153 (180)
T ss_dssp             EEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEEC
T ss_pred             EEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEE
Confidence            99999999999999887 78888877665 6899999999999976544          677888999998886 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||+++.|++++|+++.+.+.+.
T Consensus       154 Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          154 SAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC-
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-33  Score=208.13  Aligned_cols=166  Identities=28%  Similarity=0.479  Sum_probs=144.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      |...+.+||+|+|++|||||||+++|..+.+...+.++....+.....+++..+.+.+||+||++. ...+..+++.+|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            455678999999999999999999999999888888888887777788899999999999999988 7788888999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +++|||++++++++.+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  169 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC  169 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999987 67877776542  5899999999999987644          778889999998886 89999


Q ss_pred             ccCCCC-CHHHHHHHHHHHHhC
Q 028362          161 SSKTQQ-NVKAVFDAAIKVVIK  181 (210)
Q Consensus       161 Sa~~~~-~i~~~~~~i~~~~~~  181 (210)
                      ||+++. |++++|+++.+.+.+
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHHHh
Confidence            999999 999999999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=203.67  Aligned_cols=169  Identities=28%  Similarity=0.601  Sum_probs=147.6

Q ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCc
Q 028362            2 ASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA   80 (210)
Q Consensus         2 ~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   80 (210)
                      +....+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            334456799999999999999999999999988888888766653 4567788999999999999999999999999999


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      |++|+|||++++.++..+ ..|+..+....  .++|+++|+||+|+....           +..+++..++...+. +++
T Consensus        89 d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~  155 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFI  155 (195)
T ss_dssp             CEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEE
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEE
Confidence            999999999999999987 68888887754  579999999999995432           677888999998886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++||+++.|++++|+++.+.+....
T Consensus       156 ~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          156 EASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.7e-33  Score=205.71  Aligned_cols=167  Identities=28%  Similarity=0.523  Sum_probs=144.8

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ...+.+||+|+|++|||||||+++|.++.+...+.++.+.++.. ...+++..+.+.+||+||++++...+..+++.+|+
T Consensus        19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (192)
T 2fg5_A           19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA   98 (192)
T ss_dssp             --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred             ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence            34578999999999999999999999999887778888776643 45667788999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++.+++..++. +++++|
T Consensus        99 iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  166 (192)
T 2fg5_A           99 AVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETS  166 (192)
T ss_dssp             EEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECB
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999987 78888887765 5899999999999976543          678889999998886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++.+.+.+.
T Consensus       167 a~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          167 AKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTTTBSHHHHHHHHHHTCC--
T ss_pred             CCCCcCHHHHHHHHHHHHHhh
Confidence            999999999999999877543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=6.6e-33  Score=203.29  Aligned_cols=165  Identities=30%  Similarity=0.539  Sum_probs=146.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+|+|++|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            34679999999999999999999999998888888888877777888999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..+++.++. +++++||
T Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  162 (187)
T 2a9k_A           95 CVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSA  162 (187)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCC
Confidence            99999999999987 67777766654  3899999999999977654          678889999999886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++.|++++|+++.+.+..
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          163 KTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-33  Score=204.43  Aligned_cols=167  Identities=31%  Similarity=0.516  Sum_probs=145.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.++.+..+. ....+++..+.+.+||+||++++..++..+++++|+
T Consensus        21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  100 (193)
T 2oil_A           21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVG  100 (193)
T ss_dssp             CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            3456799999999999999999999999888777787766553 456678889999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++...+. +++++|
T Consensus       101 vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  168 (193)
T 2oil_A          101 ALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETS  168 (193)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEe
Confidence            9999999999999887 67888777654 6899999999999977544          677888999988886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++.+.+.+.
T Consensus       169 a~~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          169 ALDSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.4e-33  Score=204.81  Aligned_cols=171  Identities=31%  Similarity=0.566  Sum_probs=126.8

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-CEEEEEEEEeCCCcccccccCccccc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYR   78 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~   78 (210)
                      |+....+.+||+++|++|||||||+++|.++.+...+.|+.+.++. ..+.++ +..+.+.+||+||++.+...+..+++
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            6666678899999999999999999999999888777777765543 344455 56688999999999999999999999


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      .+|++|+|||++++.++..+ ..|+..+....     .++|+++|+||+|+.....         .+..+++..++...+
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~  150 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLG  150 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTT
T ss_pred             cCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcC
Confidence            99999999999999999887 67777665432     5789999999999954321         156788888888555


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ..+++++||+++.|++++|+++.+.+.+
T Consensus       151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          151 DIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             SCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            5589999999999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=2.8e-33  Score=203.97  Aligned_cols=167  Identities=26%  Similarity=0.425  Sum_probs=142.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECC-EEEEEEEEeCCCcccccccCcccccCccE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ..+.+||+++|++|||||||+++|.++.+...+.|+.+.++ ...+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            46789999999999999999999999888766667765443 44566665 78999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC---CCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      +++|||++++.+++.+ ..|+..+....   ...| +++|+||+|+.....          +..+++..++..++. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999887 68888776642   2455 899999999977544          677888999998886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++||+++.|++++|+++.+.+....
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999987664

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=5.6e-33  Score=199.88  Aligned_cols=162  Identities=28%  Similarity=0.554  Sum_probs=142.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||++++..+.+...+.++....+.....+++..+.+.+||+||++++..++..+++.++++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            56999999999999999999999999888888888777777788899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.++..+ ..|...+....  .+.|+++|+||+|+.....          +..+++..++..++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999887 56666555443  5899999999999976544          678888899998886 899999999


Q ss_pred             CCCHHHHHHHHHHHHh
Q 028362          165 QQNVKAVFDAAIKVVI  180 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~  180 (210)
                      +.|++++|+++.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-32  Score=204.11  Aligned_cols=167  Identities=29%  Similarity=0.606  Sum_probs=146.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+.++. ..+..++..+.+.+||+||++++...+..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            4456799999999999999999999999988877888776654 456678889999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus        84 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  151 (203)
T 1zbd_A           84 FILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEAS  151 (203)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEE
Confidence            9999999999999987 67888887765 6899999999999976544          678889999999987 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++.+.+.+.
T Consensus       152 a~~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          152 AKDNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             TTTTBSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999887653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=207.52  Aligned_cols=166  Identities=30%  Similarity=0.549  Sum_probs=135.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+|+|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999988877778776555 34566788889999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.....          +..+++..++...+. +++++||
T Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA  169 (200)
T 2o52_A          102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA  169 (200)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999987 68887776654 6899999999999976544          677888999998886 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++.+.+...
T Consensus       170 ~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8e-33  Score=207.40  Aligned_cols=165  Identities=22%  Similarity=0.401  Sum_probs=133.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCcc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGAD   81 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~   81 (210)
                      ....+||+|+|++|||||||+++|.+..  +...+.++..+.+...+.+++..+.+.+||++|++. ++.+...+++.++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            3466999999999999999999999643  344433333334455677899999999999999876 5666777889999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      ++|+|||++++.+|+.+ ..|...+...  ..++|++||+||+|+...+.          +..+++..++...+. ++++
T Consensus       114 ~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e  181 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  181 (211)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             EEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEE
Confidence            99999999999999997 6787766543  25799999999999976544          677788888888886 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +||++|.||+++|+++++.+..
T Consensus       182 ~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          182 TSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.8e-32  Score=199.50  Aligned_cols=166  Identities=34%  Similarity=0.636  Sum_probs=140.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|++|||||||+++|..+.+...+.|+.+.++ ...+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999988888788877665 44567788899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      ++|||++++.++..+ ..|+..+....     .++|+++|+||+|+....           +..+++..++......+++
T Consensus        84 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~  151 (177)
T 1wms_A           84 LLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYF  151 (177)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEE
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEE
Confidence            999999999999887 67877765442     578999999999997332           6788888888855555899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       152 ~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          152 ETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=5.6e-33  Score=204.82  Aligned_cols=167  Identities=33%  Similarity=0.556  Sum_probs=144.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee--EEEEECCE---------EEEEEEEeCCCccccccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQEDYNRL   72 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~i~D~~G~~~~~~~   72 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.++.+.++.  .....++.         .+.+.+||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4457899999999999999999999999888887888876664  23444544         789999999999999999


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      +..+++++|++|+|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++.
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~  155 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAE  155 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHH
Confidence            99999999999999999999999987 68888777655  5899999999999976544          67788899999


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .++. +++++||+++.|++++|+++.+.+.+.
T Consensus       156 ~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          156 KYGI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             HHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            8887 899999999999999999999988653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=7.8e-33  Score=205.64  Aligned_cols=172  Identities=30%  Similarity=0.494  Sum_probs=135.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.++.+.++. ....+++..+.+.+||+||++++...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            4456799999999999999999999999887777788776654 456778899999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+......    .....+..+++..++...+. +++++|
T Consensus       104 iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~S  177 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETS  177 (199)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECC
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEee
Confidence            9999999999999987 68888887665 58999999999999743110    01122677888999999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|.++.+.+.+
T Consensus       178 A~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          178 AKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=1.6e-32  Score=198.37  Aligned_cols=163  Identities=23%  Similarity=0.366  Sum_probs=127.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEeCCCcccccc-cCcccccCccEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVL   85 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~   85 (210)
                      .+||+++|++|||||||+++|.+..+.....++. ...+...+.+++..+.+.+||++|++++.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999999776654444433 333455677899999999999999999876 78888999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||+++++++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999998 67777766654  3899999999999986654          788999999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.|++++|+++.+.+..+
T Consensus       150 ~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhc
Confidence            9999999999999987643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.9e-33  Score=205.24  Aligned_cols=166  Identities=30%  Similarity=0.560  Sum_probs=137.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+|+|.+|||||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999988777777776555 34566788899999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..+...+++++||
T Consensus       103 ilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA  171 (192)
T 2il1_A          103 ILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASA  171 (192)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeC
Confidence            999999999999987 78888887765 5899999999999976654          67788889988864458999999


Q ss_pred             CCCCCHHHHHHHHHHHHhC
Q 028362          163 KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++.|++++|+++.+.+.+
T Consensus       172 ~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          172 KDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1e-32  Score=199.29  Aligned_cols=163  Identities=33%  Similarity=0.634  Sum_probs=137.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            4689999999999999999999999888777788776654 345667788999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+....           +..+++..+++.++. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999887 78888777665 689999999999994332           677888999999886 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      +.|++++|+++.+.+.+.
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.2e-33  Score=199.79  Aligned_cols=163  Identities=26%  Similarity=0.492  Sum_probs=141.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|.++.+...+.++.+..+......++..+.+.+||+||++++..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            46899999999999999999999998887778888777766677888899999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      ||++++.++..+ ..|+..+....   +++|+++|+||+|+.....          +...++..++...+. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999887 56666555432   5799999999999977654          677788888888886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+
T Consensus       150 ~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCS
T ss_pred             CCcCHHHHHHHHHHHHhh
Confidence            999999999999987654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=3.4e-32  Score=200.49  Aligned_cols=165  Identities=34%  Similarity=0.539  Sum_probs=135.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      +..+.+||+++|.+|||||||+++|..+.+...+.++....+...+..++..+.+.+||+||++++...+..+++.++++
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            34567999999999999999999999998888778888777777788889999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ++|||++++.++..+ ..|+..+....  .++|+++|+||+|+....           +..+++.++++.++. +++++|
T Consensus        97 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S  163 (190)
T 3con_A           97 LCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETS  163 (190)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999987 78887776654  479999999999997632           577888999999887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++.+.+.+
T Consensus       164 a~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          164 AKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             TTTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=2e-32  Score=199.41  Aligned_cols=164  Identities=33%  Similarity=0.547  Sum_probs=142.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+.+||+++|++|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4669999999999999999999999988887788876554 445677888999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|+|++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++...+. +++++||+
T Consensus        92 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (179)
T 2y8e_A           92 VVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAK  159 (179)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999887 67877766543 6899999999999976654          677888888888886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+..
T Consensus       160 ~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTBSHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999887643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=9.7e-33  Score=204.71  Aligned_cols=166  Identities=24%  Similarity=0.391  Sum_probs=137.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEeCCCcccccc-cCcccccCccEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   83 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~   83 (210)
                      ...+||+|+|++|||||||+++|.+......+.|+.. +.+...+.+++..+.+.+||++|++.+.. ++..++++++++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            4679999999999999999999975443322334333 33455667899999999999999988765 777888999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      |+|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999997 67887776654  4899999999999976544          778889999998886 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      |+++.|++++|+++++.+....
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-34  Score=210.38  Aligned_cols=167  Identities=31%  Similarity=0.605  Sum_probs=146.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .....+||+|+|++|||||||+++|.++.+...+.++.+.++. .....++..+.+.+||+||++.+..++..+++++|+
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            3456799999999999999999999999887777777765553 345667778899999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..++. +++++|
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  166 (191)
T 3dz8_A           99 FILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEAS  166 (191)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            9999999999999987 67988888766 6899999999999977654          788889999999997 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |+++.|++++|+++.+.+.+.
T Consensus       167 a~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          167 AKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.8e-32  Score=200.92  Aligned_cols=164  Identities=29%  Similarity=0.529  Sum_probs=139.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccc-ccCcccccCccE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADV   82 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~   82 (210)
                      .++.+||+|+|.+|||||||+++|..+.+...+.++.+.++ ...+.+++..+.+.+||+||++++. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            45679999999999999999999999988887778876655 3456678888999999999999998 888899999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +|+|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++..++. +++++
T Consensus        97 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  164 (189)
T 1z06_A           97 VVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFET  164 (189)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999987 67887776653  6899999999999976644          678889999998887 89999


Q ss_pred             ccCCC---CCHHHHHHHHHHHHh
Q 028362          161 SSKTQ---QNVKAVFDAAIKVVI  180 (210)
Q Consensus       161 Sa~~~---~~i~~~~~~i~~~~~  180 (210)
                      ||+++   .|++++|.++.+.+.
T Consensus       165 Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          165 SAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CSSSGGGGSCHHHHHHHHC----
T ss_pred             eCCcCCcccCHHHHHHHHHHHHh
Confidence            99999   999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.8e-32  Score=193.86  Aligned_cols=162  Identities=33%  Similarity=0.550  Sum_probs=143.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||++++..+.+...+.++....+......++..+.+.+||+||++++...+..++..+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            46899999999999999999999998888778888777777778889999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.++..+ ..|+..+....  .++|+++|+||+|+....           ...+++..+++.++. +++++||++
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999987 78887776654  379999999999997632           577888999998887 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      +.|++++|+++.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.2e-31  Score=199.20  Aligned_cols=165  Identities=26%  Similarity=0.477  Sum_probs=139.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEE--------------------------
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTT--------------------------   55 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------------   55 (210)
                      |+..+.+||+|+|++|||||||+++|.++.+...+.++.+..+.. .+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            556678999999999999999999999999888878887655533 34444444                          


Q ss_pred             -----------EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362           56 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL  124 (210)
Q Consensus        56 -----------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~  124 (210)
                                 +.+.+||+||++.+...+..+++.+|++++|+|++++.++..+ ..|+..+..... .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence                       8899999999999999999999999999999999999999987 688887776543 99999999999 


Q ss_pred             ccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .....          +..+++..++...+. +++++||+++.|++++|+++.+.+.+
T Consensus       159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33322          678899999999887 89999999999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=4.8e-33  Score=207.53  Aligned_cols=168  Identities=26%  Similarity=0.356  Sum_probs=109.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeee-eEEEEECCE--EEEEEEEeCCCcccccccCcccccCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGA   80 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   80 (210)
                      .+.+||+|+|++|||||||+++|..+  .+...+.+|.+.++ ...+.+++.  .+.+.+||+||++.+..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46789999999999999999999998  77777778876443 445666776  89999999999999999999999999


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccCC----CCcEEEEeeCccccc-ccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      |++|+|||++++.++..+ ..|+..+.....    ++|+++|+||+|+.. ...          +..+++..++..++. 
T Consensus        98 d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~-  165 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL-  165 (208)
T ss_dssp             CEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-
T ss_pred             cEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-
Confidence            999999999999999998 688888877653    899999999999976 443          678899999999986 


Q ss_pred             EEEEeccCC-CCCHHHHHHHHHHHHhCCccc
Q 028362          156 YYIECSSKT-QQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       156 ~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      +++++||++ +.|++++|+++.+.+.+...+
T Consensus       166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          166 DFFDVSANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             EEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence            899999999 999999999999988765433

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.2e-32  Score=207.23  Aligned_cols=167  Identities=38%  Similarity=0.610  Sum_probs=143.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCE----------EEEEEEEeCCCccccccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGT----------TVNLGLWDTAGQEDYNRL   72 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~i~D~~G~~~~~~~   72 (210)
                      ...+.+||+|+|++|||||||+++|..+.+...+.++.+.++.. .+.+++.          .+.+.+||+||++++...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            34577999999999999999999999998877777777665533 4555555          789999999999999999


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      +..+++.+|++|+|||++++.++..+ ..|+..+....  .++|+++|+||+|+.....          +..+++..++.
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~  169 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELAD  169 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHH
Confidence            99999999999999999999999987 68888777654  6899999999999976544          67888999999


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      .++. +++++||+++.|++++|+++.+.+.+.
T Consensus       170 ~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          170 KYGI-PYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             HCCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9886 899999999999999999999988754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=1.7e-31  Score=197.58  Aligned_cols=165  Identities=22%  Similarity=0.398  Sum_probs=130.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc-ccccCcccccCccE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV   82 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~   82 (210)
                      ...+||+|+|++|||||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|++. ++.++..+++.+++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            45799999999999999999999953  3444433333344455677899999999999999876 56677888899999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +++|||++++.+++.+ ..|...+....  +++|+++|+||+|+...+.          +..+++..++...+. +++++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999987 67777665532  5799999999999976543          677788888888875 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|.||+++|+++++.+...
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999988543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-31  Score=198.63  Aligned_cols=163  Identities=33%  Similarity=0.636  Sum_probs=141.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...++|+|+|++|||||||+++|..+.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45699999999999999999999999888777888776654 45677888899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++.++..+ ..|+..+.... .++|+++|+||+|+....           +..+++..++..++. +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc-----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999887 68888777665 579999999999994332           577888889988886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+
T Consensus       165 ~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.98  E-value=2.4e-32  Score=202.03  Aligned_cols=165  Identities=23%  Similarity=0.278  Sum_probs=133.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-----------CCceeeeeeE-EE-EECCEEEEEEEEeCCCccccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-----------IPTVFDNFSA-NV-VAEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~-~~-~~~~~~~~~~i~D~~G~~~~~   70 (210)
                      .....+||+|+|++|||||||++.+. +.+...+           .||.+.++.. .. .+++..+.+.+||+||+++++
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            34577999999999999999996555 4444442           3344444322 23 456788999999999999999


Q ss_pred             ccCcccccCccEEEEEEECC------ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ  144 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~  144 (210)
                      .++..+++++|++|+|||++      +.+++..+ ..|+..+....+++|+++|+||+|+...            +..++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~  155 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEM  155 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHH
Confidence            99999999999999999999      55677776 6787777555578999999999999764            67888


Q ss_pred             HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          145 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       145 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +.+++..++..+++++||+++.|++++|+++.+.+.+.
T Consensus       156 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          156 VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            99999888865899999999999999999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.98  E-value=9.1e-31  Score=208.54  Aligned_cols=177  Identities=60%  Similarity=1.051  Sum_probs=151.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ...++|+++|.+|||||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            35689999999999999999999999998888899888887778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.++..+...|+..+....+++|+++|+||+|+........  .......+..+++..++...+..+++++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            99999999999985578888887777899999999999975421000  0001123778899999999987689999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++.|++++|+++.+.+.++
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=1.5e-33  Score=209.44  Aligned_cols=166  Identities=31%  Similarity=0.616  Sum_probs=133.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+|+|.+|||||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            356799999999999999999999998887776676665553 4567788999999999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      |+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+++..++..++. +++++||
T Consensus       110 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA  177 (199)
T 3l0i_B          110 IVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSA  177 (199)
T ss_dssp             EECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999998 78988887765 5899999999999976544          445566778888886 7899999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++.|++++|+++.+.+.+.
T Consensus       178 ~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          178 KNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             ---HHHHHHHHHHTTTTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999998877543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=6.5e-32  Score=203.80  Aligned_cols=167  Identities=28%  Similarity=0.468  Sum_probs=141.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      .....+||+++|.+|||||||+++|..+.+...+.++.+.++ .....+++..+.+.+||+||++.+..++..+++++++
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   90 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC   90 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence            345779999999999999999999887776666667775444 4456678899999999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +++|||++++.++..+ ..|+..+....+++|+++|+||+|+.....            ..+...++...+. +++++||
T Consensus        91 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa  156 (221)
T 3gj0_A           91 AIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISA  156 (221)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBG
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeC
Confidence            9999999999999998 789988888777899999999999976432            1244556777776 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCcc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +++.|++++|.++.+.+.....
T Consensus       157 ~~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          157 KSNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             GGTBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999876543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=2e-31  Score=200.52  Aligned_cols=168  Identities=27%  Similarity=0.439  Sum_probs=138.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEE-CCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ....+||+|+|.+|||||||+++|.++.+...+.++.+..+... ... ++..+.+.+||+||++.+..++..++.++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            34679999999999999999999998888776667665544332 222 3455889999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      +|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.....          +..+.+..++...+. +++++|
T Consensus        88 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  155 (218)
T 4djt_A           88 AILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEIS  155 (218)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEB
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEe
Confidence            9999999999999987 68888777655 4699999999999976644          777888888888876 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |+++.|++++|+++.+.+.....
T Consensus       156 a~~g~gv~~l~~~l~~~~~~~~~  178 (218)
T 4djt_A          156 AKTAHNFGLPFLHLARIFTGRPD  178 (218)
T ss_dssp             TTTTBTTTHHHHHHHHHHHCCTT
T ss_pred             cCCCCCHHHHHHHHHHHHhcccc
Confidence            99999999999999999977543

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.95  E-value=1e-33  Score=211.10  Aligned_cols=174  Identities=62%  Similarity=1.068  Sum_probs=145.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|.+|||||||+++|..+.+...+.++....+...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            57799999999999999999999998888888888877776667778888999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.++..+...|+..+....+++|+++|+||+|+.........  ......+..+++..+++..+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            999999999998755888888876678999999999999765321110  001112566777888888876688999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIKVV  179 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~  179 (210)
                      ++.|++++|+++.+.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=5.5e-31  Score=195.15  Aligned_cols=167  Identities=15%  Similarity=0.146  Sum_probs=124.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ....+||+|+|.+|||||||+++|.++.+.. .+.||.+..+. .+  +...+.+.+||+||++++..++..+++++|++
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            4567899999999999999999999999887 77788764432 22  34457889999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC---------CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH-HHcC
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-KQIG  153 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (210)
                      |+|||++++.++..+ ..|+..+....         +++|+++|+||+|+.....       ...+......... +..+
T Consensus        91 i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           91 IFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             EEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSC
T ss_pred             EEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCe
Confidence            999999999999998 55555444321         2799999999999976521       0001111111111 2234


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                       .+++++||+++.|++++|+++.+.+....
T Consensus       163 -~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          163 -FVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             -EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             -eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence             48999999999999999999999887553

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.7e-30  Score=192.99  Aligned_cols=156  Identities=18%  Similarity=0.231  Sum_probs=119.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.++|+++|++|||||||+++|.++.+. .+.||.+.. ...+.+++  +.+.+||+||++.++.++..+++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999988764 455666554 23455666  788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-----------
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------  152 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  152 (210)
                      |+|+++++++.++ ..|+..+...  ..++|+++|+||+|+...            +..+++.++....           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999988 5666655443  268999999999999752            5666777665532           


Q ss_pred             -----CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          153 -----GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       153 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                           ...+++++||++|.|++++|+++.+.
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                 23579999999999999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=6.7e-30  Score=188.58  Aligned_cols=156  Identities=17%  Similarity=0.234  Sum_probs=123.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++  +.+.+||+||++.++.++..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45689999999999999999999998875 445666554 33455666  788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-----------
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------  152 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  152 (210)
                      |||+++++++.++ ..|+..+...  ..+.|+++|+||+|+...            +..+++.+.....           
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence            9999999999998 5666555432  268999999999999752            4555555554321           


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          153 GASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ...+++++||+++.|++++|+++.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            23479999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=2.6e-30  Score=190.39  Aligned_cols=162  Identities=23%  Similarity=0.287  Sum_probs=125.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .++.+||+|+|++|||||||+++|.++.+...+.||.+..+.. +..  ..+.+.+||+||++++..++..+++++|++|
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            3567999999999999999999999998887778887766542 333  3478899999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYI  158 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (210)
                      +|||+++++++..+ ..|+..+ .... .++|+++|+||+|+....            ..++.......    ....+++
T Consensus        96 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~  162 (188)
T 1zd9_A           96 YMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREICCY  162 (188)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCeeEE
Confidence            99999999999988 4555544 3322 689999999999997542            22222211111    1124789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+...
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999877543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=5.1e-30  Score=185.38  Aligned_cols=159  Identities=16%  Similarity=0.207  Sum_probs=123.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||+++|..+.+.. +.||.+... ..+.++  .+.+.+||+||++.++..+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV-ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE-EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce-EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            467999999999999999999999888753 466664332 334445  4778899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHH-HHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH-----HHHcCCcEEE
Q 028362           86 AFSLVSRASYENVLKKWIP-ELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-----RKQIGASYYI  158 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~-~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  158 (210)
                      |+|++++.++... ..|+. .+.... .+.|+++|+||+|+....            ...+....     +...+ .+++
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  146 (171)
T 1upt_A           81 VVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAM------------TSSEMANSLGLPALKDRK-WQIF  146 (171)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCTTSC-EEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCC------------CHHHHHHHhCchhccCCc-eEEE
Confidence            9999999999887 45544 444332 689999999999997642            12222211     12223 3789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+.++
T Consensus       147 ~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          147 KTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ECcCCCCcCHHHHHHHHHHHHhhc
Confidence            999999999999999999988654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.2e-29  Score=184.83  Aligned_cols=160  Identities=17%  Similarity=0.239  Sum_probs=125.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||++++.++. ...+.||.+... ..+.+++  +.+.+||+||+++++..+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce-EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            577999999999999999999999887 566677776432 2344454  778899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE  159 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  159 (210)
                      |+|++++.++.++ ..|+..+... . .+.|+++|+||+|+....            ..++..+....    ....++++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHWRIQG  158 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCceEEEE
Confidence            9999999999987 4555544433 2 689999999999997642            22333322211    12248899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||+++.|++++|+++.+.+.+.
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          159 CSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999988654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.4e-30  Score=187.35  Aligned_cols=162  Identities=17%  Similarity=0.215  Sum_probs=122.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||+++|..+.+. .+.||.+.. ...+.+++  +.+.+||+||+++++..+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            56799999999999999999999988776 556665533 23344554  788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-----cCCcEEE
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYI  158 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  158 (210)
                      |+|+++++++..+ ..|+..+...  ..+.|+++|+||+|+...            ...++..+....     .+ .+++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~-~~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQ-WHIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSC-EEEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCC-cEEE
Confidence            9999999999998 5666655544  268999999999999753            234444433322     23 3889


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCccc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPPQK  185 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~  185 (210)
                      ++||+++.|++++|+++.+.+......
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC----
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999998766443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=186.76  Aligned_cols=161  Identities=16%  Similarity=0.246  Sum_probs=124.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..+.+||+++|.+|||||||+++|.++. +...+.+|.+.. ...+.+++  +.+.+||+||+++++..+..+++++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS-IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE-EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee-EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            3467999999999999999999999887 556666776533 23344454  7889999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH--Hc--CCc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--QI--GAS  155 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~  155 (210)
                      ++|+|++++.++..+ ..|+..+....    .++|+++|+||+|+...            ...+++.++..  .+  ...
T Consensus        95 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~  161 (190)
T 2h57_A           95 IFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW  161 (190)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce
Confidence            999999999999987 45555544332    47999999999999754            34555555553  11  124


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++++||+++.|++++|+++.+.+.+
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            88999999999999999999987754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=7.4e-31  Score=188.65  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=118.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+++|++|||||||+++|..+.+.. +.||.+.. ...+.  ...+.+.+||+||+++++.++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999888754 46666532 22232  244788999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-----HcCCcEEEEec
Q 028362           89 LVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYIECS  161 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~S  161 (210)
                      +++++++..+ ..|+..+...  .++.|+++|+||+|+....            ...+......     ..+ .+++++|
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~S  142 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRN-WYIQATC  142 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCC-EEEEECB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCcc-EEEEEcc
Confidence            9999999987 5665554432  2689999999999996542            2222221111     122 3789999


Q ss_pred             cCCCCCHHHHHHHHHHHHhC
Q 028362          162 SKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+++.|++++|+++.+.+.+
T Consensus       143 a~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999988754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2e-29  Score=184.49  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=120.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+.+||+++|.+|||||||+++|..+.+ ..+.++.+..+ ..+.+++  +.+.+||+||+++++.++..+++++|+++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            34679999999999999999999999887 44455555332 3444555  78899999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYI  158 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  158 (210)
                      +|+|+++++++..+ ..|+..+...  ..++|+++|+||+|+...            ...++..+.....    ...+++
T Consensus        94 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~  160 (181)
T 2h17_A           94 VVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQWHIQ  160 (181)
T ss_dssp             EEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCEEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCceEEE
Confidence            99999999999987 4555544433  268999999999999653            2333333332111    123789


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      ++||+++.|++++|+++.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=2.9e-28  Score=180.98  Aligned_cols=164  Identities=31%  Similarity=0.570  Sum_probs=139.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...++|+|+|++|||||||++++.+..+...+.|+.+..+ ...+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            4579999999999999999999999988777778776554 446778999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|+|+++..++.++ ..|+..+.... .+.|+++|+||+|+.....          +..+++..++...+. +++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999886 67877665543 5789999999999976544          567788899988886 88899999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      ++.|++++|+++.+.+.+
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=4.3e-30  Score=189.92  Aligned_cols=160  Identities=16%  Similarity=0.198  Sum_probs=116.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .++.+||+++|++|||||||+++|..+.+.. +.||.+.. ...+..++  +.+.+||+||+++++..+..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3567999999999999999999999887653 34444422 22333343  78899999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH-HHH---cCCcEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-RKQ---IGASYYI  158 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~  158 (210)
                      +|||+++++++..+ ..|+..+... . .++|+++|+||+|+....            ..++.... ...   ....+++
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~  168 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTWYVQ  168 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCEEEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCceEEE
Confidence            99999999999987 5666554432 2 589999999999996542            22222211 111   0123789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++||+++.|++++|+++.+.+.+
T Consensus       169 ~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          169 ATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             ECcCCCcCCHHHHHHHHHHHHhc
Confidence            99999999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=3.5e-30  Score=189.09  Aligned_cols=165  Identities=21%  Similarity=0.316  Sum_probs=121.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeE-EEEE---CCEEEEEEEEeCCCcccccccCcccccCcc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSA-NVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~   81 (210)
                      .+||+|+|++|||||||+++|.+.  .+...+.+|.+.++.. .+.+   ++..+.+.+||++|+++|..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            489999999999999999999985  4555667777655432 2222   346788999999999999999999999999


Q ss_pred             EEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC---HHHHHHHHHHcCCc--
Q 028362           82 VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEELRKQIGAS--  155 (210)
Q Consensus        82 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  155 (210)
                      ++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+.....          +.   .+.+..++..++..  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999997 578776 788888776666899999999999975432          21   33445666556653  


Q ss_pred             -EEEEeccCCCC-CHHHHHHHHHHHHhCCc
Q 028362          156 -YYIECSSKTQQ-NVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       156 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~  183 (210)
                       +++++||+++. +++++++.+.+.+....
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence             38999999996 99999999998887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=8.8e-30  Score=187.46  Aligned_cols=159  Identities=19%  Similarity=0.213  Sum_probs=122.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||++++..+.+.. +.||.+.. ...+..+  .+.+.+||+||+++++..+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            578999999999999999999999877643 45555432 2234444  4788899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHH-HhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH-----HHcCCcEEE
Q 028362           86 AFSLVSRASYENVLKKWIPE-LQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI  158 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~-~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  158 (210)
                      |+|+++++++..+ ..|+.. +.... .+.|+++|+||+|+....            ...+.....     ...+ .+++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~-~~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRT-WTIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCc-eEEE
Confidence            9999999999987 455444 44332 689999999999997642            122222111     1123 3789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCC
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++||+++.|++++|+++.+.+.+.
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             EccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999999999999988643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=1.8e-29  Score=184.90  Aligned_cols=159  Identities=21%  Similarity=0.266  Sum_probs=119.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|.++.+. .+.||.+.. ...+.++  .+.+.+||+||++.++..+..+++++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN-IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE-EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE-EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            57799999999999999999999987542 334444432 2234445  4788899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEE
Q 028362           86 AFSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIE  159 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  159 (210)
                      |||+++++++..+ ..|+..+ .... .++|+++|+||+|+....            ..++..+....    ....++++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  156 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVWQIQS  156 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCceEEEE
Confidence            9999999999987 5665544 3322 689999999999997642            22222221111    11247899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +||++|.|++++|+++.+.+.+
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          157 CSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCTTTCTTHHHHHHHHHHTC--
T ss_pred             ccCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999987754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.1e-29  Score=188.26  Aligned_cols=167  Identities=13%  Similarity=0.206  Sum_probs=120.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee---eEEEEE-CCEEEEEEEEeCCCcccccccC---ccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVVA-EGTTVNLGLWDTAGQEDYNRLR---PLS   76 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~   76 (210)
                      ..++.+||+++|++|||||||++++.+. +...  ++.+..+   .....+ ++..+.+.+||++|+++|....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            3457799999999999999999987764 3322  2322222   112223 3567889999999999987765   789


Q ss_pred             ccCccEEEEEEECCCh--hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----
Q 028362           77 YRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----  150 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----  150 (210)
                      +++++++|+|||++++  +++..+ ..|+..+....+++|+++|+||+|+........   ....+..+++..++.    
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~---~~~~v~~~~~~~~~~~~~~  168 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIE---TQRDIHQRANDDLADAGLE  168 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH---HHHHHHHHHHHHHHHTTCT
T ss_pred             cccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhhH---HHhHHHHHHHHHHHHhhhh
Confidence            9999999999999997  666665 566666655567899999999999865311000   001155566777777    


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          151 QIGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ..+. +++++||++ .|++++|+.+++.+
T Consensus       169 ~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          169 KLHL-SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence            5554 899999999 99999999999875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.1e-29  Score=184.23  Aligned_cols=159  Identities=13%  Similarity=0.194  Sum_probs=120.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+++|++|||||||++++..+.+ ..+.|+.+.. ...+.+++  +.+.+||+||+++++..+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998776 4445555432 22344454  788899999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEE
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE  159 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  159 (210)
                      |+|++++.++..+ ..|+..+...  ..+.|+++|+||+|+...            ...++..+.....    ...++++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~  158 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSWSIVA  158 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCEEEEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCceEEEE
Confidence            9999999999987 5666655544  368999999999999654            2333333332211    1237899


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +||+++.|++++|+++.+.+.+
T Consensus       159 ~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          159 SSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             EBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ccCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999988753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=7.9e-28  Score=177.64  Aligned_cols=162  Identities=31%  Similarity=0.573  Sum_probs=140.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...++|+|+|++|||||||++++.+..+...+.|+.+.++ ...+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            4569999999999999999999999988877888887665 446778999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|+|+++..+++++ ..|+..+.... .+.|+++++||+|+.....          +..+++..++...+. .++++||+
T Consensus       107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sal  174 (191)
T 1oix_A          107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSAL  174 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999998886 67777665543 5789999999999976543          567888999998886 88899999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028362          164 TQQNVKAVFDAAIKVV  179 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~  179 (210)
                      ++.|++++|+++.+.+
T Consensus       175 d~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          175 DSTNVEAAFQTILTEI  190 (191)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=5.6e-29  Score=186.64  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=116.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCE-EEEEEEEeCCCcccccc-cCcccccCccE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADV   82 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~~~   82 (210)
                      ..+.+||+++|++|||||||+++|..+.+...+.++......  +.+++. .+.+.+||+||+++++. ++..+++++++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            356799999999999999999999999887776555433222  445543 58899999999999987 88888999999


Q ss_pred             EEEEEECCChh-HHHHHHHHHHHHHhcc---CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH------------
Q 028362           83 FVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------------  146 (210)
Q Consensus        83 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------------  146 (210)
                      +|+|||+++.. ++......|...+...   ..++|+++|+||+|+......        ....+.+.            
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~~~~  153 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--------KLIQQQLEKELNTLRVTRSA  153 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--------HHHHHHHHHHHHHHHHHCC-
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--------HHHHHHHHHHHHHHhccchh
Confidence            99999999864 4666545566655442   357999999999999765320        00001111            


Q ss_pred             --------------------HHHHHcC--CcEEEEeccCCC------CCHHHHHHHHHHH
Q 028362          147 --------------------ELRKQIG--ASYYIECSSKTQ------QNVKAVFDAAIKV  178 (210)
Q Consensus       147 --------------------~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~  178 (210)
                                          .|+....  ..+|+++||+++      .||+++|+++.+.
T Consensus       154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                                1111110  458999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=190.17  Aligned_cols=163  Identities=17%  Similarity=0.287  Sum_probs=123.6

Q ss_pred             CCceeEEEEECCC---------CCCHHHHHHHHHc---CCCCCCCCCce-eeeeeE---------------EEEECCEEE
Q 028362            5 ASRFIKCVTVGDG---------AVGKTCMLICYTS---NKFPTDYIPTV-FDNFSA---------------NVVAEGTTV   56 (210)
Q Consensus         5 ~~~~~kv~llG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~---------------~~~~~~~~~   56 (210)
                      ..+.+||+|+|.+         |||||||+++|..   +.+...+.|++ +.++..               ...+++..+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            4567999999999         9999999999998   55666666665 222211               112467889


Q ss_pred             EEEEEe-----------------------CCCcccccccCccccc---------------------CccEEEEEEECCCh
Q 028362           57 NLGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR   92 (210)
Q Consensus        57 ~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~   92 (210)
                      .+.+||                       ++|+++|+.++..+++                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            999999                       7788888888888888                     79999999999998


Q ss_pred             --hHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362           93 --ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus        93 --~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                        ++++.+ ..|+..+...  ..++|+++|+||+|+.....          +  +++..++......+++++||+++.|+
T Consensus       176 ~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~~~~e~SAk~g~gv  242 (255)
T 3c5h_A          176 MNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNLQVVETSARSNVNV  242 (255)
T ss_dssp             ---CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred             chhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCCeEEEEECCCCCCH
Confidence              999987 6888777654  26899999999999965432          2  57777777642348999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028362          169 KAVFDAAIKVVI  180 (210)
Q Consensus       169 ~~~~~~i~~~~~  180 (210)
                      +++|+++++.+.
T Consensus       243 ~elf~~l~~~l~  254 (255)
T 3c5h_A          243 DLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=4.2e-27  Score=171.14  Aligned_cols=159  Identities=16%  Similarity=0.225  Sum_probs=117.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      .++.++|+++|++|||||||+++|.++.+...+.++....+ ...+..++.  .+.+||+||++++..++..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35779999999999999999999999888776666554333 234556664  467899999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC--------Cc
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--------AS  155 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  155 (210)
                      ++|+|++++......  .++..+..  .++|+++|+||+|+....             .++........+        ..
T Consensus        83 i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT  145 (178)
T ss_dssp             EEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence            999999884322221  12222222  478999999999996531             122222222222        14


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++++||+++.|++++|+++.+.+...
T Consensus       146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          146 IFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            899999999999999999999877643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=6.7e-29  Score=195.21  Aligned_cols=165  Identities=15%  Similarity=0.169  Sum_probs=120.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc---cCcccccCccEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   83 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~   83 (210)
                      ||+++|++|||||||++++..+.+..   ...||.+..+..   ++ ..+.+++|||+||++|+.   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            68999999999999999888654332   245666655542   22 348899999999999974   357899999999


Q ss_pred             EEEEECCCh--hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEE
Q 028362           84 VLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYY  157 (210)
Q Consensus        84 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  157 (210)
                      |+|||++++  +.+... ..|+..+....+++|++++|||+|+........   ....+..++++++++.    +++ +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~---~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVD---AQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHH---HHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhhh---HHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999998  333332 344555555567899999999999975421000   0011556677777775    454 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      ++|||++ .||+++|..+++.+.....
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence            9999998 6899999999998876543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=5e-27  Score=169.29  Aligned_cols=153  Identities=16%  Similarity=0.146  Sum_probs=111.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccccc------Cccccc-
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSYR-   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~-   78 (210)
                      +.++|+++|++|||||||+++|.+..+.....|+..... ...+.+++  ..+.+||+||++.+...      ...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            358999999999999999999998776544445433222 23344455  57889999999887533      244554 


Q ss_pred             -CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           79 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        79 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                       +++++++|+|+++.+..    ..|+..+..  .++|+++|+||+|+.....          +.. ++..+++.++. ++
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~  141 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLME--MGANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV  141 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHH--TTCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHh--cCCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence             89999999999886543    345555544  3789999999999976432          221 35677777775 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028362          158 IECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      +++||+++.|++++|+++.+.+
T Consensus       142 ~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          142 VPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=5.9e-28  Score=192.37  Aligned_cols=161  Identities=16%  Similarity=0.202  Sum_probs=117.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+|+|.+|||||||+++|..+.+... .||....+. .+..  ..+.+.+||+||++.|..++..+++.+|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~-~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE-EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE-EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            3568999999999999999999998876443 344433322 2333  34788999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc----CCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (210)
                      |||++++.++..+...|...+.... +++|+++|+||+|+....            ..++........    ...+++++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~v  306 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNWYIQAT  306 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCEEEEEC
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCCEEEEE
Confidence            9999999999988555555655543 689999999999997643            222222211111    12478999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||+++.||+++|+++.+.+.+.
T Consensus       307 SAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          307 CATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTTTTBTHHHHHHHHHHHHTC-
T ss_pred             ECCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999988654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=2.8e-27  Score=186.87  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=129.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--C-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-----cccCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--P-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~   78 (210)
                      ..+||+++|++|||||||++++.++..  . ..+.+|.+..+. ...+.+ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            458999999999999999999998732  2 234556555544 233433 588999999999998     788888999


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHH---HHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-  154 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~---~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (210)
                      ++|++|+|||++++++++++ ..|..   .+....+++|+++|+||+|+......    .....+..+++.+++..++. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999887 55544   44444578999999999999762110    00000345788899998873 


Q ss_pred             -cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 -SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                       .+++++||++ .++.++|..+++.+....
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence             6999999999 899999999998776543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=5.7e-27  Score=177.58  Aligned_cols=166  Identities=10%  Similarity=0.045  Sum_probs=114.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCccccc---------ccCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN---------RLRPL   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   75 (210)
                      .+.++|+|+|.+|||||||+++|.++.+.....+...... .......+  +.+.+||+||+....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4569999999999999999999998876422222211111 11222333  678899999994311         11223


Q ss_pred             cccCccEEEEEEECCChhHHHHH-HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCH---HHHHHHHHH
Q 028362           76 SYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRKQ  151 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  151 (210)
                      ++..+|++|+|||++++.++... ...|+..+....+++|+++|+||+|+.....          +..   +.+..++..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  174 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN  174 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence            46788999999999998776421 2356666665546899999999999976543          333   355666666


Q ss_pred             cC-CcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      .+ ..+++++||+++.|++++|+++.+.+....
T Consensus       175 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          175 VKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            65 248999999999999999999999887543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=7.4e-27  Score=197.23  Aligned_cols=165  Identities=21%  Similarity=0.278  Sum_probs=124.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEE---------EECCEEEEEEEEeCCCcccccccCc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV---------VAEGTTVNLGLWDTAGQEDYNRLRP   74 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~D~~G~~~~~~~~~   74 (210)
                      .....+||+++|.+|||||||++++.++.+...+.||.+.++....         ..++..+.+.+||+||++.+..++.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3457799999999999999999999999988888888877665332         1133468899999999999999999


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      .+++.++++|+|+|+++.+..    ..|+..+....++.|+++|+||+|+.....          +..+++..++...+.
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~~----~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~  182 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSNK----HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN  182 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGGH----HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred             HHccCCcEEEEEEeCCCchhH----HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence            999999999999999776433    678888887777899999999999976554          677788888888886


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                       +++++||+++.|++++++++.+.+....
T Consensus       183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          183 -RFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             -CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             -ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence             7999999999999999999999987654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=4.4e-27  Score=172.78  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=118.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC-----------cccccccCcccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~   77 (210)
                      +||+++|++|||||||+++|.++.+...+.|+..... ......    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999999999888766666543221 122223    578899999           666777777777


Q ss_pred             cC-ccEEEEEEECCChhHHHHHHHHHHHH---------Hhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362           78 RG-ADVFVLAFSLVSRASYENVLKKWIPE---------LQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  146 (210)
Q Consensus        78 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      +. ++++++|+++.|+.++.++...|...         +... ..++|+++|+||+|+....             .+.+.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            77 88888888888888887765566542         1211 1579999999999996541             45677


Q ss_pred             HHHHHcCCc------EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          147 ELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       147 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      .++..++..      +++++||+++.|++++|+++.+.+.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            788888762      4799999999999999999999886553

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=5.1e-26  Score=166.99  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=118.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccc------cCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLS   76 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~   76 (210)
                      +..+.++|+++|++|||||||+++|.+..+.....|+.... ....+..++  +.+.+||+||++.+..      ++..+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence            44577999999999999999999999876544434443322 233444555  6788999999988752      34445


Q ss_pred             cc--CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           77 YR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        77 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      +.  .++++++|+|.++.   +.. ..|+..+..  .+.|+++|+||+|+.....          +. ..+..+++.++.
T Consensus        81 ~~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~  143 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATAL---ERN-LYLTLQLME--MGANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV  143 (188)
T ss_dssp             HHHHCCSEEEEEEEGGGH---HHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS
T ss_pred             HhccCCCEEEEEecchhH---HHH-HHHHHHHHh--cCCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC
Confidence            54  58999999998764   333 456655554  4789999999999976542          22 345677777786


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                       +++++||+++.|++++|+++.+.+....
T Consensus       144 -~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          144 -KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             -CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             -CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence             8999999999999999999999887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=2.1e-26  Score=169.97  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEE-EEECCEEEEEEEEeCCC----------cccccccC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLR   73 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G----------~~~~~~~~   73 (210)
                      ....++|+|+|.+|||||||+++|.++.+.....++.+.+.... ...++   .+.+||+||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34679999999999999999999998876555555554333222 22333   578899999          66777777


Q ss_pred             cccccCc---cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC--HHHHHHH
Q 028362           74 PLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT--TAQGEEL  148 (210)
Q Consensus        74 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~  148 (210)
                      ..+++.+   +++++|+|++++.++...  .+...+..  .+.|+++|+||+|+.....          +.  .+++.+.
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~  162 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGK----------WDKHAKVVRQT  162 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG----------HHHHHHHHHHH
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHH----------HHHHHHHHHHH
Confidence            7777766   999999999988777653  23333333  5789999999999976542          21  1222221


Q ss_pred             HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          149 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       149 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .......+++++||+++.|++++|+++.+.+.
T Consensus       163 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          163 LNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            11122358999999999999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=3.4e-26  Score=163.63  Aligned_cols=150  Identities=21%  Similarity=0.185  Sum_probs=104.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-------cccCcccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSYRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~   79 (210)
                      .||+++|++|||||||++++.++.+.  ....++...........++.  .+.+||+||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987643  22222222333344555664  6788999999873       3345557889


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|++++|+|++++.+...  ..+...+..  .+.|+++|+||+|+.....              ++.+++ .++..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence            999999999998644332  223333333  4689999999999976521              223334 456557899


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      +||+++.|++++|+++.+.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=5e-26  Score=165.26  Aligned_cols=153  Identities=19%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   76 (210)
                      +.++|+|+|.+|||||||+++|.+..+.  ..+.++....+...+.+++.  .+.+||+||++++....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987642  23333333333445666764  47789999997643211        135


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                      ++.+|++++|+|++++.++..  ..|+..+.... .++|+++|+||+|+.....          .       ++...+ .
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~-------~~~~~~-~  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL----------G-------MSEVNG-H  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC----------E-------EEEETT-E
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh----------h-------hhhccC-C
Confidence            789999999999999887753  35666655544 5799999999999964321          0       011123 4


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++++||+++.|++++|+++.+.+..
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            88999999999999999999887643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=4.4e-25  Score=174.32  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=124.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc----------c
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----------R   71 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~   71 (210)
                      ++.+.-.|+++|.+|||||||+|+|.+..+..  ....++..........+ ..+.+.+|||||+..+.          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence            45677899999999999999999999987642  22222222222222333 14678899999996654          4


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .+..+++.+|++++|+|++++.+..+. ..|++.+..  .++|+++|+||+|+.....          ........+...
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~--~~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~~  151 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKP--LNKPVIVVINKIDKIGPAK----------NVLPLIDEIHKK  151 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGG--GCCCEEEEEECGGGSSSGG----------GGHHHHHHHHHH
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHh--cCCCEEEEEECccCCCCHH----------HHHHHHHHHHHh
Confidence            555678899999999999998887775 566777776  4689999999999973322          466777778887


Q ss_pred             cC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++ ..+++++||+++.|++++|+++.+.+...
T Consensus       152 ~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          152 HPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             CTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             ccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            74 45899999999999999999999988643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=3.6e-25  Score=170.60  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=115.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccC------cccc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY   77 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~   77 (210)
                      ..+.++|+++|++|||||||+++|.+..+.....|...... ...+...+  ..+.+||+||+..+...+      ..++
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            35679999999999999999999998765433334332222 22333334  678899999999887644      3444


Q ss_pred             --cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                        ..+|++++|+|+++.++...    |...+..  .++|+++|+||+|+.....          +. .+...++..++. 
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~~----~~~~l~~--~~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-  141 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSLY----LLLEILE--MEKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-  141 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHHH----HHHHHHT--TTCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-
T ss_pred             hhcCCCEEEEEeCCCchhhHHH----HHHHHHh--cCCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-
Confidence              58999999999998765432    3333333  3799999999999976543          22 236777888886 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      +++++||+++.|++++|+++.+.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          142 PVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            8999999999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=1.9e-25  Score=164.55  Aligned_cols=162  Identities=16%  Similarity=0.124  Sum_probs=112.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCC----------cccccccCc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRP   74 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   74 (210)
                      ....+||+++|++|||||||+++|.++.+. ...++.+.+........+  ..+.+||+||          ++.+..++.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            345689999999999999999999988732 223443333322222112  2467899999          666666666


Q ss_pred             ccccCc---cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           75 LSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        75 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .+++.+   +++++|+|.+++.+....  .+...+..  .++|+++|+||+|+.....        .....+++..++..
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS--LNIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence            676665   999999999876443322  22222222  2689999999999975421        01344566677776


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          152 IGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+..+++++||+++.|++++|+++.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            665689999999999999999999988753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=3.6e-25  Score=171.70  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=112.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc------cCccccc--
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR--   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--   78 (210)
                      ..++|+++|++|||||||+|+|.+........|..... .....+.. .+.+.+||+||+..+..      ++..++.  
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            35899999999999999999999876433333422211 12223344 56789999999988863      3445554  


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|++++|+|+++.++..    .|...+..  .++|+++|+||+|+.....          +. .+...++..++. +++
T Consensus        80 ~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~vi  141 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PVV  141 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CEE
T ss_pred             CCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CEE
Confidence            699999999998876543    34334333  4799999999999976542          22 345677788886 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHh
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ++||+++.|++++|+++.+.+.
T Consensus       142 ~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          142 ATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             ECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEccCCCCHHHHHHHHHHHHh
Confidence            9999999999999999988664

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=1.5e-24  Score=170.48  Aligned_cols=161  Identities=17%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccc--------cc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED--------YN   70 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~   70 (210)
                      |+.. .+..+|+|+|.+|||||||+|+|.+..+.. ...| |+..........+  ...+.+|||||+.+        +.
T Consensus         1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~   77 (301)
T 1wf3_A            1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMD   77 (301)
T ss_dssp             --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHH
T ss_pred             CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHH
Confidence            5543 466789999999999999999999887642 2222 2222222122223  46788999999876        33


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      .....+++++|++++|+|++++.+...  ..+...+....++.|+++|+||+|+.....          .    .....+
T Consensus        78 ~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~----~~~~~~  141 (301)
T 1wf3_A           78 QEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------E----AMKAYH  141 (301)
T ss_dssp             HHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------H----HHHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------H----HHHHHH
Confidence            445567889999999999988754432  334456665545799999999999965421          0    122223


Q ss_pred             H-cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          151 Q-IGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       151 ~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      . .+..+++++||+++.|++++++++.+.+.
T Consensus       142 ~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~  172 (301)
T 1wf3_A          142 ELLPEAEPRMLSALDERQVAELKADLLALMP  172 (301)
T ss_dssp             HTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             HhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence            2 34457899999999999999999988664

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=8.3e-25  Score=168.36  Aligned_cols=150  Identities=15%  Similarity=0.194  Sum_probs=110.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccc----------cCcccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   77 (210)
                      .+|+++|.+|||||||+|+|.+..+.....|....+ ....+..++.  .+.+||+||+..+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            489999999999999999999876544334444322 2334555664  778899999988764          334455


Q ss_pred             --cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 028362           78 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS  155 (210)
Q Consensus        78 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (210)
                        ..+|++|+|+|+++.++...+    ...+..  .++|+++|+||+|+.....          . ......++..++. 
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l----~~~l~~--~~~pvilv~NK~Dl~~~~~----------~-~~~~~~l~~~lg~-  141 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYL----TSQLFE--LGKPVVVALNMMDIAEHRG----------I-SIDTEKLESLLGC-  141 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHH----HHHHTT--SCSCEEEEEECHHHHHHTT----------C-EECHHHHHHHHCS-
T ss_pred             hhCCCCEEEEEeeCCCchhHHHH----HHHHHH--cCCCEEEEEEChhcCCcCC----------c-HHHHHHHHHHcCC-
Confidence              789999999999987665443    223332  3789999999999976542          1 1124556777786 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 028362          156 YYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       156 ~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +++++||+++.|++++|+++.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            89999999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=7.6e-24  Score=164.44  Aligned_cols=157  Identities=17%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccc------cCcccc--
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY--   77 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   77 (210)
                      +.++|+++|++|||||||+++|.+..+.....|+..... ...+..++.  .+.+||+||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999998766444445443333 334455554  478899999988765      344444  


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .++|++++|+|+++.+...   ..+.+....  ...|+++|+||+|+.....          ... ....+.+.++. ++
T Consensus        80 ~~~d~vi~v~D~~~~~~~~---~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMRNL---FLTLELFEM--EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHHHH---HHHHHHHHT--TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchhhH---HHHHHHHhc--CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence            6799999999998864322   223333222  2389999999999876543          211 26677778886 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +++||+++.|++++++++.+.+...
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.91  E-value=1.2e-24  Score=169.13  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeee-eeEEEEECCEEEEEEEEeCCCcccccccCc----------c
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP----------L   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----------~   75 (210)
                      +.++|+++|.+|||||||+|+|.+..+.....|..... ....+...+  ..+.+||+||+..+.....          .
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            46899999999999999999999876543334443222 233344444  4567799999988763221          1


Q ss_pred             c--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      +  ...+|++++|+|+++.+.....    ...+...  ++|+++|+||+|+.....          . ......+++.++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~-~~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHTT----------E-EECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhhh----------H-HHHHHHHHHhcC
Confidence            2  2689999999999987665443    2222222  689999999999976532          1 123466777778


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      . +++++||++|.|++++++++.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            6 899999999999999999998876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=2.6e-25  Score=167.09  Aligned_cols=149  Identities=11%  Similarity=0.129  Sum_probs=101.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC--
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG--   79 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   79 (210)
                      ..+.++|+++|++|||||||+++|..+.+..   .+.|+....+        ..+.+.+||+||++.++..+..+++.  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            4467999999999999999999999887654   2344443322        44678899999999999888888887  


Q ss_pred             --ccEEEEEEECC-ChhHHHHHHHHHHHHHhc-----cCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           80 --ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        80 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                        ++++|+|+|++ ++.++... ..|+..+..     ...++|+++|+||+|+.......    .......+++..++..
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~  155 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIER  155 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHH
Confidence              89999999999 88888877 444443332     23689999999999997654200    0000114556666666


Q ss_pred             cCCcEEEEeccCCCCC
Q 028362          152 IGASYYIECSSKTQQN  167 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~  167 (210)
                      .+. +++++||+++.+
T Consensus       156 ~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          156 RKK-SLNEVERKINEE  170 (218)
T ss_dssp             HHH-HHHC--------
T ss_pred             Hhc-cccccccccccc
Confidence            664 778899998764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.91  E-value=3.2e-23  Score=165.83  Aligned_cols=126  Identities=19%  Similarity=0.217  Sum_probs=97.0

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY-S-PGVPVVLVGTKL  122 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~  122 (210)
                      .+.+.+||++||+.++..|..++++++++|+|||+++          ..++.+. ..|...+... . .++|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECc
Confidence            4788999999999999999999999999999999999          4578887 4565555443 2 689999999999


Q ss_pred             cccccccc---ccC--CCCCCccCHHHHHHHHHH----------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          123 DLREDKHY---LAD--HPGLVPVTTAQGEELRKQ----------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       123 D~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+......   +..  ......+..+++..++..          ....++++|||+++.||+++|.++.+.+.+
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            99644310   000  001112677888888873          233478899999999999999999998864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=3.1e-24  Score=161.63  Aligned_cols=167  Identities=11%  Similarity=-0.007  Sum_probs=108.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEEC-CEEEEEEEEeCCCc----------cccccc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQ----------EDYNRL   72 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~D~~G~----------~~~~~~   72 (210)
                      ....++|+|+|.+|||||||+++|.+........++.+.+.. ....+. .....+.+|||||.          +.+..+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            345789999999999999999999987621111111111111 112222 33467889999994          333444


Q ss_pred             CcccccC---ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362           73 RPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  149 (210)
Q Consensus        73 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (210)
                      +..+++.   +|++++|+|++++.+...  ..|+..+..  .++|+++|+||+|+......        ....+...+..
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~l  173 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQES--------INALRATQKSL  173 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhH--------HHHHHHHHHHH
Confidence            4455554   788999999987544322  455566655  46899999999999764320        00122223333


Q ss_pred             HHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          150 KQI------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       150 ~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ..+      ...+++++||+++.|++++|+++.+.+....
T Consensus       174 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          174 DAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            332      4468999999999999999999999886553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.90  E-value=1.1e-23  Score=174.72  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=97.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   76 (210)
                      ..++|+|+|.+|||||||+|+|.+...  .....+++.+.....+.+++  +.+.+|||||++++...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            458999999999999999999998752  23333344343444566666  568889999998776443        336


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++.+|++++|+|++++.++... ..+...+... .++|+++|+||+|+.....          .   ....+... +..+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~---~~~~l~~~-~~~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------A---LIRAIADG-TGTE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------H---HHHHHHHH-HTSC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------h---hHHHHHhc-CCCc
Confidence            8899999999999998877432 2333333322 2799999999999976542          2   12334433 2257


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ++++||+++.|++++++++.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            899999999999999999999887

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.90  E-value=1.4e-23  Score=167.82  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=93.7

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeC
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTK  121 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK  121 (210)
                      +.+.+++||++||++|+.+|..++++++++|+|||++          +..++.+. ..|...+...  .+++|++||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            6789999999999999999999999999999999998          78899887 5665555443  268999999999


Q ss_pred             cccccccccc--------cCCC---CCCccCHHHHHHHHHHc---------------CCcEEEEeccCCCCCHHHHHHHH
Q 028362          122 LDLREDKHYL--------ADHP---GLVPVTTAQGEELRKQI---------------GASYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       122 ~D~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                      +|+.......        .+..   ...+...+++..++...               ...++++|||+++.||+++|.++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            9996543210        0000   00112356777775431               22356899999999999999999


Q ss_pred             HHHHhC
Q 028362          176 IKVVIK  181 (210)
Q Consensus       176 ~~~~~~  181 (210)
                      .+.+.+
T Consensus       340 ~~~I~~  345 (354)
T 2xtz_A          340 DETLRR  345 (354)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.90  E-value=4.4e-23  Score=162.93  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=95.9

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHH-hccC-CCCcEEEEeeCc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKL  122 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~-~~~~-~~~piilv~nK~  122 (210)
                      .+.+++||++||++++..|..++++++++|+|||++          +..++.+.. .|...+ .... .++|++|++||+
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~-~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH-HHHHHHhhhhccCCceEEEEEECc
Confidence            378999999999999999999999999999999665          667787774 444444 3333 689999999999


Q ss_pred             cccccccccc------CCCCCCccCHHHHHHHHH----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          123 DLREDKHYLA------DHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       123 D~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      |+...+....      +...-..+..+++.++..          ..+ ..+++|||+++.||+++|..+.+.+.+..
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            9976542000      111111367788888843          233 37788999999999999999999987653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=2.5e-23  Score=171.63  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=111.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccc----------ccccCc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRLRP   74 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   74 (210)
                      ..+||+++|.+|||||||+|+|.+....  .....++.+.+...+..++..  +.+|||||+.+          |..+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence            5699999999999999999999987652  333334434344455666654  77899999843          332222


Q ss_pred             -ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHHHc
Q 028362           75 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQI  152 (210)
Q Consensus        75 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  152 (210)
                       .+++.+|++++|+|++++.+.++.  .|+..+..  .++|+++|+||+|+.....          ...++.. .+.+.+
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~l  317 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDHF  317 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT----------THHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch----------HHHHHHHHHHHHhc
Confidence             367789999999999998887764  56666554  4799999999999976532          3333332 222222


Q ss_pred             ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          153 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       153 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                         +..+++++||++|.|++++|+.+.+.+..
T Consensus       318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence               33489999999999999999999887753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.89  E-value=4.1e-23  Score=171.19  Aligned_cols=160  Identities=19%  Similarity=0.213  Sum_probs=115.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCC----------cccccccC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLR   73 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   73 (210)
                      ...++|+++|.+|||||||+++|.+...  ...+.+++.+.+...+..++.  .+++|||||          ++.|..+.
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4579999999999999999999997642  233333443334445666665  678899999          56665554


Q ss_pred             c-ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           74 P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        74 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      . .+++.+|++|+|+|++++.+...  ..|...+..  .++|+++|+||+|+.....          ...+++.+.++..
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            4 36788999999999987544332  456655554  4699999999999976543          5556666666554


Q ss_pred             ----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          153 ----GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       153 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                          +..+++++||++|.|++++|+++.+.+..
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence                23589999999999999999999987743

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=2.6e-22  Score=161.60  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=114.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccc---------cCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR---------LRPL   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   75 (210)
                      ...++|+++|.+|||||||+++|.+........+...... .......  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998764322122111111 1122223  35688899999865421         1112


Q ss_pred             cccCccEEEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 SYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      +...+|++++|+|++++.  ++... ..|+..+.....+.|+++|+||+|+.....            .+++..++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence            345699999999998877  56665 567777665445899999999999975432            244556666666


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      . +++++||++|+|++++++++.+.+...
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            5 789999999999999999999988543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.88  E-value=9e-24  Score=172.59  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=112.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc-------c
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------S   76 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------~   76 (210)
                      ...++|+|+|..|+|||||+++|.+..+.  .....++.......+...+. ..+.+|||||++++..+...       +
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            45689999999999999999999987653  22222222223334444443 27889999999988766443       6


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +..+|++|+|+|++..+.    ...|+..+...  ++|+++|+||+|+.....            .+....+++.++. +
T Consensus       111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence            888999999999943332    24566666554  799999999999987643            2556666666675 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++++||+++.|++++|+++.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            89999999999999999999998544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=7.8e-22  Score=158.31  Aligned_cols=125  Identities=14%  Similarity=0.132  Sum_probs=87.4

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY-S-PGVPVVLVGTKL  122 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~  122 (210)
                      .+.+.+||++||+.++..|..++++++++|||+|+++          ..++.+. ..|...+... . .++|++|++||+
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEECh
Confidence            3788999999999999999999999999999999999          6788887 4555544433 2 689999999999


Q ss_pred             cccccccc---cc---CCCCCCccCHHHHHHHHH-----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          123 DLREDKHY---LA---DHPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       123 D~~~~~~~---~~---~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      |+......   +.   +...-..+..+++..++.           ..+ .++++|||+++.||+++|.++.+.+.+
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            99754310   00   000001256777777762           123 378899999999999999999998864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=2.3e-22  Score=158.26  Aligned_cols=164  Identities=18%  Similarity=0.110  Sum_probs=112.4

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcc---------cc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQE---------DY   69 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~   69 (210)
                      ||.+..+..+|+|+|.+|||||||+|+|.+..+.. ...+ ++.......+..+  ...+.+|||||+.         .+
T Consensus         1 ~~v~~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~   78 (301)
T 1ega_A            1 MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLM   78 (301)
T ss_dssp             ---CCCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             CCcccccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHH
Confidence            56556677899999999999999999999876531 1122 2211111112223  3578889999987         34


Q ss_pred             cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHH
Q 028362           70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR  149 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (210)
                      ......+++.+|++++|+|+++   +......+.+.+..  .+.|+++|+||+|+.....          ...+.+..+.
T Consensus        79 ~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~  143 (301)
T 1ega_A           79 NKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLA  143 (301)
T ss_dssp             TCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHH----------HHHHHHHHHH
Confidence            5566778899999999999976   22221223333332  4789999999999976221          3345556666


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          150 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       150 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ..++...++++||+++.|++++++++...+..
T Consensus       144 ~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          144 SQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             TTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             HhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            66665578999999999999999999876643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.88  E-value=1.9e-21  Score=157.39  Aligned_cols=126  Identities=15%  Similarity=0.186  Sum_probs=94.2

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCC----------hhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcc
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLD  123 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D  123 (210)
                      +.+++||++||+.++..|..++++++++|+|||+++          ..++.+. ..|+..+...  .+++|++||+||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence            789999999999999999999999999999999999          8899987 6777666554  26899999999999


Q ss_pred             cccccc---ccc--C----------CCC----CCc-cCHHHHHHHH-----HHc-------CCcEEEEeccCCCCCHHHH
Q 028362          124 LREDKH---YLA--D----------HPG----LVP-VTTAQGEELR-----KQI-------GASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       124 ~~~~~~---~~~--~----------~~~----~~~-~~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~~  171 (210)
                      +.....   ...  .          ..+    ... ...+++..|+     ...       ....+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            865432   100  0          000    000 1245566553     221       2346779999999999999


Q ss_pred             HHHHHHHHhCC
Q 028362          172 FDAAIKVVIKP  182 (210)
Q Consensus       172 ~~~i~~~~~~~  182 (210)
                      |.++.+.+...
T Consensus       376 F~~v~~~I~~~  386 (402)
T 1azs_C          376 FNDCRDIIQRM  386 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998887644

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.88  E-value=2.3e-22  Score=159.35  Aligned_cols=128  Identities=18%  Similarity=0.208  Sum_probs=95.3

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECC----------ChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS-PGVPVVLVGTKL  122 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~  122 (210)
                      ..+.+++||++||++++.+|..++++++++|+|||++          +..++.+....|...+.... .++|++|++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            3478999999999999999999999999999999998          77888887444444444433 689999999999


Q ss_pred             ccccccccccC-----CCCCCccCHHHHHHHHHHc--------------------------CCcEEEEeccCCCCCHHHH
Q 028362          123 DLREDKHYLAD-----HPGLVPVTTAQGEELRKQI--------------------------GASYYIECSSKTQQNVKAV  171 (210)
Q Consensus       123 D~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~~  171 (210)
                      |+........+     .........+++..+....                          +...+++|||++..||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            99764321110     0111113566665555432                          1246788999999999999


Q ss_pred             HHHHHHHHhC
Q 028362          172 FDAAIKVVIK  181 (210)
Q Consensus       172 ~~~i~~~~~~  181 (210)
                      |..+.+.+++
T Consensus       319 F~~v~~~Il~  328 (340)
T 4fid_A          319 FMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=4.1e-22  Score=164.48  Aligned_cols=153  Identities=21%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------cccCcccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   77 (210)
                      .+|+|+|.+|||||||+|+|.+....  ..+..++.+........++.  .+.+|||||++..         +..+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987642  23223333333445666775  4678999998652         34456678


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH-HHHHHHcCCcE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQIGASY  156 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  156 (210)
                      +++|++++|+|+.++.+..+  ..+...+..  .++|+++|+||+|+...            . .... .++. .++..+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~  141 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE  141 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence            99999999999987654432  122223322  36899999999998532            1 1122 3343 456546


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++++||++|.|++++++++.+.+..
T Consensus       142 ~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          142 PIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHHHHHhccc
Confidence            7899999999999999999998864

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=7.3e-23  Score=163.22  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=114.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeeeEEEEECCEEEEEEEEeCCCcc----cccccCccccc---Cc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYI--PTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSYR---GA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~---~~   80 (210)
                      +|+|+|.+|||||||+++|..........  .|....+. .+.+++ ...+.+||+||+.    .+..+...+++   .+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g-~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG-MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE-EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE-EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            68899999999999999999775321111  22222211 223332 2468899999964    34445455554   49


Q ss_pred             cEEEEEEECCC---hhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           81 DVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        81 ~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      +++|+|+|+++   +.++... ..|...+..+.   .++|+++|+||+|+....              +....+...+..
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~  302 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTD  302 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCS
T ss_pred             cEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhc
Confidence            99999999998   7788876 67888887764   479999999999996431              345566666652


Q ss_pred             -cEEEEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          155 -SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       155 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                       .+++++||+++.|+++++.++.+.+.....
T Consensus       303 ~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          303 DYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence             378899999999999999999999876543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=1.9e-22  Score=167.34  Aligned_cols=151  Identities=20%  Similarity=0.220  Sum_probs=111.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc-cccccC--------ccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRLR--------PLS   76 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~~--------~~~   76 (210)
                      .++|+|+|.+|||||||+|+|.+...  ...+..|+.+.....+.+++  ..+.+|||||++ ++....        ..+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            48999999999999999999998653  34444444444455566666  457889999998 664322        245


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++.+|++|+|+|++++.+++..  .+++.+    .+.|+++|+||+|+...            +..+++..+.. .+ .+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~-~~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TD-RH  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CS-TT
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CC-Cc
Confidence            7889999999999988777553  333443    37899999999999643            23344444432 22 37


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ++++||+++.|++++++++.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999998765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=2.9e-21  Score=157.81  Aligned_cols=168  Identities=13%  Similarity=0.065  Sum_probs=114.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE--------EE---------E---ECCEEEEEEEEeC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--------NV---------V---AEGTTVNLGLWDT   63 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--------~~---------~---~~~~~~~~~i~D~   63 (210)
                      ..++.++|+++|.+++|||||+++|.+...... ..........        .+         .   .......+.+||+
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            456789999999999999999999997543221 0000000000        00         0   0123378999999


Q ss_pred             CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH
Q 028362           64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA  143 (210)
Q Consensus        64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~  143 (210)
                      ||+++|...+...+..+|++++|+|++++.+.... ..++..+.... ..|+++|+||+|+.+...        .....+
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~--------~~~~~~  152 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEE--------ALSQYR  152 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHH--------HHHHHH
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHH--------HHHHHH
Confidence            99999999888899999999999999987645444 45555555432 358999999999975431        001122


Q ss_pred             HHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          144 QGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       144 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +..++....+  ..+++++||+++.|++++++++.+.+...
T Consensus       153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence            3333332221  34899999999999999999999877554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=7.4e-22  Score=152.27  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=105.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCc--eeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc-------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYIPT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------   75 (210)
                      .+.++|+|+|.+|||||||+++|.+.. +.....++  +..........++  ..+.+|||||+..+......       
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            356999999999999999999999876 44443343  2222223344455  56788999998776443322       


Q ss_pred             ----cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEee-CcccccccccccCCCCCCccCH-------H
Q 028362           76 ----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDKHYLADHPGLVPVTT-------A  143 (210)
Q Consensus        76 ----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n-K~D~~~~~~~~~~~~~~~~~~~-------~  143 (210)
                          +++.+|++|+|+|+++..........++..+.......|+++|+| |+|+....           +..       .
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~~~  166 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSDNK  166 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCCCH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcchH
Confidence                568899999999998633222111223222211112456666666 99997431           111       3


Q ss_pred             HHHHHHHHcCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 028362          144 QGEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       144 ~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+..+....+...  +  +++||+++.|++++|.++.+.+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          167 ALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            3455666655321  2  689999999999999999998865

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1e-20  Score=154.71  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=105.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC---CCCCCCCC--ceeeeeeE-EEEE-------------C--C----EEEEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN---KFPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL   58 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~   58 (210)
                      +.+..++|+++|..++|||||+++|.+.   .+..+..+  |....+.. ....             +  +    ....+
T Consensus         4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   83 (408)
T 1s0u_A            4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRV   83 (408)
T ss_dssp             -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEE
T ss_pred             ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEE
Confidence            4567899999999999999999999843   23333333  33222221 1111             1  1    23789


Q ss_pred             EEEeCCCcccccccCcccccCccEEEEEEECCC----hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        59 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+||+||+++|...+...+..+|++|+|+|+++    +++.+.+ .    .+... ...|+++++||+|+.....     
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~l-~~~~iivv~NK~Dl~~~~~-----  152 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-M----ALEIL-GIDKIIIVQNKIDLVDEKQ-----  152 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-H----HHHHT-TCCCEEEEEECTTSSCTTT-----
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-H----HHHHc-CCCeEEEEEEccCCCCHHH-----
Confidence            999999999998777777888999999999985    3444433 2    22221 2358999999999976431     


Q ss_pred             CCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          135 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                         .....+++.+++..+  ...+++++||+++.|++++++++.+.+..+
T Consensus       153 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          153 ---AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             ---TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             ---HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence               012345666666543  234899999999999999999999877654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.86  E-value=2.6e-21  Score=163.89  Aligned_cols=163  Identities=14%  Similarity=0.187  Sum_probs=115.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCCc------eeeee---eEEEEE---CCEEEEEEEEeCCC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIPT------VFDNF---SANVVA---EGTTVNLGLWDTAG   65 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~~------~~~~~---~~~~~~---~~~~~~~~i~D~~G   65 (210)
                      .++..+|+++|+.++|||||+++|...  .+..     ....+      .+.++   ...+.+   ++..+.+++|||||
T Consensus         3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG   82 (600)
T 2ywe_A            3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG   82 (600)
T ss_dssp             GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence            356789999999999999999999852  2211     00111      01111   011111   46678999999999


Q ss_pred             cccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      +.+|...+...++.+|++|+|+|+++..+.+.. ..|.....   .++|+++|+||+|+....            .....
T Consensus        83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v~  146 (600)
T 2ywe_A           83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRVK  146 (600)
T ss_dssp             SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHHH
T ss_pred             cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHHH
Confidence            999998888899999999999999998777665 55655443   478999999999997542            22334


Q ss_pred             HHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          146 EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       146 ~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      .++...++..  +++++||++|.|++++++++.+.+..+.
T Consensus       147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            4555555542  4789999999999999999999887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.86  E-value=1e-21  Score=162.31  Aligned_cols=154  Identities=21%  Similarity=0.278  Sum_probs=102.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc--------cc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------LS   76 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~   76 (210)
                      ..++|+|+|.+|||||||+|+|.+..+  .....+++.+.....+.+++  ..+.+|||||+.++...+.        .+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            458999999999999999999997643  23333333333344556676  4568899999876654333        35


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      +..+|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+.....          ..  ....+.   ...+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~---~~~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE---NITQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT---TCCC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc---cCCc
Confidence            788999999999998776654  45555553    379999999999976543          11  001111   2347


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++++||+++.|++++++++.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            899999999999999999999887543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.85  E-value=4.2e-23  Score=172.75  Aligned_cols=162  Identities=19%  Similarity=0.183  Sum_probs=113.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ++.++|+++|++++|||||+++|....+.....++....+.. .... +....+++|||||++.|..++..++..+|++|
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~-~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSL-PSGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCS-SCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEe-CCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            467899999999999999999999765544444444333221 1112 12236788999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH---HHHc-CCcEEEEe
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI-GASYYIEC  160 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~  160 (210)
                      +|+|+++....+..  .++..+..  .++|+++++||+|+.....      .   ....+...+   +..+ +..+++++
T Consensus        81 LVVDa~dg~~~qt~--e~l~~~~~--~~vPiIVViNKiDl~~~~~------~---~v~~~l~~~~~~~e~~~~~~~iv~v  147 (537)
T 3izy_P           81 LVVAADDGVMKQTV--ESIQHAKD--AHVPIVLAINKCDKAEADP------E---KVKKELLAYDVVCEDYGGDVQAVHV  147 (537)
T ss_dssp             EECBSSSCCCHHHH--HHHHHHHT--TTCCEEECCBSGGGTTTSC------C---SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred             EEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEecccccccch------H---HHHHHHHhhhhhHHhcCCCceEEEE
Confidence            99999986655443  22333332  4689999999999975432      0   011111111   1111 23488999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ||++|.|++++++++...+..
T Consensus       148 SAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          148 SALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             CSSSSCSSHHHHHHHHHHHTT
T ss_pred             ECCCCCCchhHHHHHHHhhhc
Confidence            999999999999999987753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=9.1e-22  Score=144.86  Aligned_cols=114  Identities=12%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC---
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG---   79 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---   79 (210)
                      .+.++|+++|++|||||||+++|.+..+..   ...++...        +...+.+.+||+||++.+...+..++..   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            467899999999999999999999887643   12222211        1244678899999999998888888776   


Q ss_pred             -ccEEEEEEECC-ChhHHHHHHHHHHHHHh-c----cCCCCcEEEEeeCccccccc
Q 028362           80 -ADVFVLAFSLV-SRASYENVLKKWIPELQ-H----YSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        80 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~-~----~~~~~piilv~nK~D~~~~~  128 (210)
                       +|++|+|+|++ ++.++... ..|+..+. .    ..+++|+++|+||+|+....
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence             89999999999 89999887 45544333 2    22589999999999997654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.85  E-value=2.3e-21  Score=164.46  Aligned_cols=161  Identities=17%  Similarity=0.202  Sum_probs=112.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----CCCC------ceeeeee---EEEEE---CCEEEEEEEEeCCCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----DYIP------TVFDNFS---ANVVA---EGTTVNLGLWDTAGQE   67 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~--~~~~-----~~~~------~~~~~~~---~~~~~---~~~~~~~~i~D~~G~~   67 (210)
                      +..+|+|+|+.++|||||+++|...  .+..     ....      +.+.++.   ..+.+   ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            5689999999999999999999852  2211     1111      1111111   11212   5667899999999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      +|...+...++.+|++|+|+|++++.+.+.. ..|.....   .++|+++|+||+|+....            ......+
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~---~~ipiIvViNKiDl~~a~------------~~~v~~e  146 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME---MDLEVVPVLNKIDLPAAD------------PERVAEE  146 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEeeeccCccccc------------HHHHHHH
Confidence            9999888899999999999999987766665 55655443   368999999999997642            2233455


Q ss_pred             HHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          148 LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       148 ~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +...++..  +++++||+++.|++++++++.+.+..+.
T Consensus       147 i~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          147 IEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            55555542  4789999999999999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=2.3e-20  Score=154.08  Aligned_cols=159  Identities=21%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC-----------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-----------   73 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   73 (210)
                      ..++|+|+|++|||||||+|++.+...  ......++.+.....+.+++.  .+.+||++|+.++....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998754  223233333333455667776  46789999986543321           


Q ss_pred             -cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HHHHH
Q 028362           74 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ  151 (210)
Q Consensus        74 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  151 (210)
                       ..+++.+|++++|+|++++.+..+.  .+...+..  .++|+++|+||+|+.....          ...++.. .+.+.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1245678999999999887665442  33344433  4789999999999975432          2333332 22222


Q ss_pred             c---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          152 I---GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 ~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +   +..+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2   33488999999999999999999876643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=3e-22  Score=165.19  Aligned_cols=153  Identities=18%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcc--------cccccCcccccC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYRG   79 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~   79 (210)
                      .+|+|+|.+|||||||+|+|.+..+.. ..++.+.+... .......+..+.+|||||++        .++..+..++++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            689999999999999999999876531 11222222111 11222233568899999986        556677778899


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +|++|+|+|+.++.+..+  ..+...+..  .++|+++|+||+|+.....          .    ..++. .++..++++
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~----------~----~~~~~-~lg~~~~~~  143 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA----------N----IYDFY-SLGFGEPYP  143 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC---------------C----CCSSG-GGSSCCCEE
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh----------h----HHHHH-HcCCCCeEE
Confidence            999999999988766543  234444543  5789999999999975421          0    01112 234446789


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +||++|.|++++++++.+.+..
T Consensus       144 iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          144 ISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             CBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EeCcCCCChHHHHHHHHHhcCc
Confidence            9999999999999999988864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.84  E-value=9.4e-21  Score=157.74  Aligned_cols=160  Identities=19%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC----C---CCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK----F---PTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPL   75 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~----~---~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   75 (210)
                      ...+.++|+++|..++|||||+++|.+..    .   ..+..+....+. ...+..++  +.+.+||+||+++|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            34568999999999999999999999765    2   222222111111 11233344  67888999999999888888


Q ss_pred             cccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           76 SYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                      .+..+|++|+|+|+++   +++.+.+     ..+..  .++|+++|+||+|+.+...        .....+++.++....
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l-----~~~~~--~~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~  157 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHM-----LILDH--FNIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQST  157 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHH-----HHHHH--TTCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHS
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHH-----HHHHH--cCCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhh
Confidence            8999999999999987   4444433     22322  3688899999999975321        002344555665554


Q ss_pred             -C--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          153 -G--ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       153 -~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                       +  ..+++++||++|.|++++++++.+.+.
T Consensus       158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          158 HNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             SSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             2  248999999999999999999999774

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=141.82  Aligned_cols=168  Identities=16%  Similarity=0.125  Sum_probs=103.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--e-eeeeeEEEEECCEEEEEEEEeCCCcc-----------cccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT--V-FDNFSANVVAEGTTVNLGLWDTAGQE-----------DYNR   71 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~   71 (210)
                      ...+||+|+|.+|||||||+++|.+..+.....++  . .........+++  ..+.+|||||..           .+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            46799999999999999999999988775544442  2 111233344555  467889999943           3444


Q ss_pred             cCcccccCccEEEEEEECCChhHHH-HHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYE-NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      .+...++.++++|+|+|+++..... .....+...+... ...|+++|+||+|+...... .   +......+.+..+.+
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~-~---~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL-H---DYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH-H---HHHHhchHHHHHHHH
Confidence            4555667899999999987543321 1112333332221 24699999999998765320 0   000011246777788


Q ss_pred             HcCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 028362          151 QIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK  181 (210)
Q Consensus       151 ~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~  181 (210)
                      ..+. .++.+++..+     .++.++|..+...+..
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            8776 5566665533     6899999988777744

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=5.4e-20  Score=150.58  Aligned_cols=165  Identities=16%  Similarity=0.137  Sum_probs=110.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCC---CCCCCCC--ceeeeeeE-EEEE-------------C--C----EEEEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNK---FPTDYIP--TVFDNFSA-NVVA-------------E--G----TTVNL   58 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~-~~~~-------------~--~----~~~~~   58 (210)
                      ..+..++|+++|..++|||||+++|.+..   +..+..+  |....+.. ....             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            34677999999999999999999998532   3333223  33222221 1110             1  1    13789


Q ss_pred             EEEeCCCcccccccCcccccCccEEEEEEECCCh----hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        59 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+||+||+++|.......+..+|++|+|+|+++.    ++.+.+ .    .+... ...|+++|+||+|+.....     
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~----~~~~~-~~~~iivviNK~Dl~~~~~-----  154 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-M----ALQII-GQKNIIIAQNKIELVDKEK-----  154 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-H----HHHHH-TCCCEEEEEECGGGSCHHH-----
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-H----HHHHc-CCCcEEEEEECccCCCHHH-----
Confidence            9999999999987777777889999999999853    344333 2    22222 2358999999999976431     


Q ss_pred             CCCCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          135 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                         .....+++.++....  ...+++++||+++.|++++++++.+.+..+
T Consensus       155 ---~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          155 ---ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             ---HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             ---HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence               001233445554432  234899999999999999999999877654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.84  E-value=7.9e-20  Score=147.02  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             eE-EEEECCCCCCHHHHHHHHHcCCCCCCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccc---------ccccCcccc
Q 028362            9 IK-CVTVGDGAVGKTCMLICYTSNKFPTDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLSY   77 (210)
Q Consensus         9 ~k-v~llG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   77 (210)
                      ++ |+|+|.+|||||||+|+|.+........+ ++.+.....+.+++  ..+.+||++|...         |+..+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            45 99999999999999999998765322222 22222344566777  4568899999722         333333 46


Q ss_pred             cCccEEEEEEECCChh--HHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-C
Q 028362           78 RGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G  153 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  153 (210)
                      ..+|++++|+|++++.  ..... ..|.+.+.... .+.|+++|+||+|+.....         ....+.+..++..+ .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            7899999999999876  44443 55666665544 5789999999999965320         01122333444554 2


Q ss_pred             -CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 -ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                       ..+++++||+++.|++++++++.+.+...
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence             23678999999999999999999877543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=7.4e-20  Score=155.31  Aligned_cols=168  Identities=15%  Similarity=0.070  Sum_probs=107.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeeEEE-------------EECCEEEEEEEEeCCCccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANV-------------VAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~i~D~~G~~~   68 (210)
                      .+.++|+++|++++|||||+++|.+..+...    ..++.+..+....             .++.....+++|||||+++
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4678999999999999999999986543221    1222222211000             0001112588999999999


Q ss_pred             ccccCcccccCccEEEEEEECCC---hhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC-----C-CCCc
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH-----P-GLVP  139 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~-----~-~~~~  139 (210)
                      |..++...++.+|++|+|+|+++   +++++.+ .    .+..  .++|+++++||+|+..........     . ....
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   6666543 2    2222  478999999999997532100000     0 0000


Q ss_pred             cCHH-------HHHHHHHHc--------------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          140 VTTA-------QGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       140 ~~~~-------~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      ...+       +......+.              +..+++++||++|.|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0000       111111111              2248899999999999999999998765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.4e-21  Score=157.29  Aligned_cols=161  Identities=13%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCC--------Cceeeee-eEEEEECCEEEEEEEEeCCCc-------ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK-FPTDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------EDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~-~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~D~~G~-------~~~   69 (210)
                      ..++|+|+|++|+|||||+++|.... +...+.        ++....+ ......++..+.+++||+||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            45899999999999999999987543 333322        3333322 222334566788999999999       666


Q ss_pred             cccCc-------ccccCcc-----------EEEEEEECCC-hhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           70 NRLRP-------LSYRGAD-----------VFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        70 ~~~~~-------~~~~~~~-----------~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      ..++.       .+++.++           +.+++|++++ ..++..+...|+..+   ..++|+|+|+||+|+..... 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e-  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE-  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH-
Confidence            66665       4444333           2245555554 445555433455554   35789999999999976542 


Q ss_pred             ccCCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          131 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       131 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                               +..  +.+..++..+++ +++++||+++.+ ++.|.++.+.+...
T Consensus       192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence                     322  466666666776 788999999998 88888888877543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=8.2e-20  Score=150.54  Aligned_cols=163  Identities=15%  Similarity=0.115  Sum_probs=103.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeeeeeEEEEEC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------------------DYIPTVFDNFSANVVAE   52 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~   52 (210)
                      ..+..++|+++|.+++|||||+++|...  .+..                             +..+....+... ..+.
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~-~~~~   91 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGR-AYFE   91 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeE-EEEe
Confidence            3457799999999999999999999532  1111                             111111112111 1122


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---HH--HHHHHHHHHHhccCCCCc-EEEEeeCccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---YE--NVLKKWIPELQHYSPGVP-VVLVGTKLDLRE  126 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~  126 (210)
                      .....+.+||+||+++|...+...+..+|++|+|+|+++...   +.  ......+..+..  .++| +++++||+|+..
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence            334688999999999999888889999999999999987632   11  001222222222  3566 999999999954


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 028362          127 DKHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD  173 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  173 (210)
                      ...   . ........++...+...++.     .+++++||++|.|++++++
T Consensus       170 ~~~---~-~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNW---S-NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cch---H-HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            210   0 00000233455556655553     4799999999999999654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.82  E-value=2.2e-20  Score=155.78  Aligned_cols=158  Identities=13%  Similarity=0.056  Sum_probs=98.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC--CCCCC---------------------------CCceeeeee-EEEEECCEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK--FPTDY---------------------------IPTVFDNFS-ANVVAEGTT   55 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~--~~~~~---------------------------~~~~~~~~~-~~~~~~~~~   55 (210)
                      +..+||+++|.+++|||||+++|....  +...+                           ....+.++. ....+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            567999999999999999999997541  11000                           000011110 011223344


Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHH-----HHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      +.+.+||+||+++|...+..++..+|++|+|+|++++.+...     .....+..+... ...|+++|+||+|+.+....
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH
Confidence            678999999999999988889999999999999998753211     112222233222 23579999999999763220


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcC----CcEEEEeccCCCCCHHH
Q 028362          131 LADHPGLVPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKA  170 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  170 (210)
                      .      .....+++..+...++    ..+++++||++|.|+++
T Consensus       190 ~------~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 R------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             H------HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             H------HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            0      0012233444444443    24889999999999975

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.82  E-value=1.6e-20  Score=145.85  Aligned_cols=160  Identities=12%  Similarity=0.079  Sum_probs=89.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-------CCceeeee-eEEEEECCEEEEEEEEeCCCccccc-------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-------   70 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~-------   70 (210)
                      ..++|+|+|.+|+|||||+|++..... ...+       .+|..... ...+..++..+.+++|||||.....       
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            469999999999999999999876543 3332       34443333 2233345566799999999974321       


Q ss_pred             ccC-------cccc-------------cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccc
Q 028362           71 RLR-------PLSY-------------RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY  130 (210)
Q Consensus        71 ~~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~  130 (210)
                      .+.       ..++             ..+|+++++++.+..... .....++..+..   .+|+++|+||+|+..... 
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e-  161 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTPEE-  161 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCHHH-
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCHHH-
Confidence            111       1111             236789999977653211 112345555554   799999999999864321 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          131 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                             .....+.+.+.....+. +++.+||+++.|++++++++.+.+
T Consensus       162 -------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          162 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             -------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence                   00112334444555665 678899999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=4.5e-21  Score=158.97  Aligned_cols=156  Identities=18%  Similarity=0.122  Sum_probs=100.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCC--------cccccccCccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLS   76 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~   76 (210)
                      ....+|+|+|.+|||||||+|+|.+..+... .++.+.+.. ....+......+.+|||||        +++++..+..+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            3457999999999999999999998764311 112222221 1222333446788999999        66777778888


Q ss_pred             ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 028362           77 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY  156 (210)
Q Consensus        77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (210)
                      ++++|++|+|+|..+..+...  ..+...+..  .++|+++|+||+|+.....              ...++. .++...
T Consensus       100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~--------------~~~e~~-~lg~~~  160 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGE  160 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCSG-GGSSSS
T ss_pred             HhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh--------------hHHHHH-HcCCCc
Confidence            999999999999876433322  344445543  5799999999999864321              111111 233335


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          157 YIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       157 ~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+++||+++.|++++++++.+.+..
T Consensus       161 ~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          161 PYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             eEEeecccccchHHHHHHHHhhccc
Confidence            5799999999999999999887653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.81  E-value=8e-20  Score=149.36  Aligned_cols=167  Identities=20%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--------CCCCC-CC------Cceeeeee-EEEEECCEEEEEEEEeCCCccc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--------KFPTD-YI------PTVFDNFS-ANVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--------~~~~~-~~------~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      .+..++|+++|.+++|||||+++|...        .+... ..      .+.+.++. ....+......+.+||+||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            457799999999999999999999863        22110 00      01111111 1122333346788999999999


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++|+|+|++++...+.  ..++..+..  .++| +++++||+|+.....       ......+++..
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~--~~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~  156 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD  156 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHH--TTCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHH--cCCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence            98888888999999999999988754332  345555444  3678 889999999974211       00012345666


Q ss_pred             HHHHcCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCC
Q 028362          148 LRKQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKP  182 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~  182 (210)
                      +...++.    .+++++||+++.|                  ++++++.+.+.+..+
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            7777663    5899999999987                  788888887766543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.81  E-value=4.3e-19  Score=148.92  Aligned_cols=115  Identities=12%  Similarity=0.030  Sum_probs=81.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC------------------CCCC------CCCceeeeeeEEEEECCEEEEEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK------------------FPTD------YIPTVFDNFSANVVAEGTTVNLGLW   61 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~------------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~   61 (210)
                      .+..+|+|+|.+|+|||||+++|....                  ....      .-.+.. .....+...  .+.+.+|
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~--~~~i~li   87 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT-TSVMQFPYK--DYLINLL   87 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS-SSEEEEEET--TEEEEEE
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE-EeEEEEEeC--CEEEEEE
Confidence            356899999999999999999996210                  0000      000000 001123333  3678899


Q ss_pred             eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ||||+.+|...+..+++.+|++|+|+|+++..+.... ..|. .+..  .++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~-~~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLME-VCRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHH-HHHT--TTCCEEEEEECTTSCCS
T ss_pred             ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHH-HHHH--cCCCEEEEEeCCCCccc
Confidence            9999999999999999999999999999987666654 3443 3333  36899999999999654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.81  E-value=2.8e-20  Score=153.33  Aligned_cols=163  Identities=15%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC--CCCCCC-----------------------------CCceeeeeeEEEEEC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTDY-----------------------------IPTVFDNFSANVVAE   52 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~   52 (210)
                      ..+..++|+++|..++|||||+++|...  .+....                             .+........ ..+.
T Consensus         2 ~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~-~~~~   80 (435)
T 1jny_A            2 SQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF-MRFE   80 (435)
T ss_dssp             --CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEE
T ss_pred             CCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE-EEEe
Confidence            4567899999999999999999999864  332110                             0001111110 1122


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHH------HHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV------LKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~------~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      ...+.+.+||+||+++|...+..++..+|++|+|+|+++ .+++..      ....+..+... .-.|+++++||+|+..
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCC
Confidence            334678999999999999888889999999999999998 556543      12222222221 1236899999999976


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHH
Q 028362          127 DKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD  173 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~  173 (210)
                      ...   . ........+++..++..++.    .+++++||++|.|+.+++.
T Consensus       159 ~~~---~-~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPY---D-EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STT---C-HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccc---c-HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            210   0 00000235667777777662    5899999999999986543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.80  E-value=1.1e-19  Score=148.21  Aligned_cols=165  Identities=21%  Similarity=0.176  Sum_probs=110.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC-------CCCCC----CCC---ceeeeeeE-EEEECCEEEEEEEEeCCCcccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN-------KFPTD----YIP---TVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~-------~~~~~----~~~---~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      ..++|+++|.+++|||||+++|...       .+...    ..+   ..+.+... ...+......+.+||+||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            5789999999999999999999863       11100    000   00111111 112333346788999999999988


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      .....+..+|++|+|+|+++....+..  .++..+..  .++| +++++||+|+.....       ......+++.+++.
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~--~~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQ--IGVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT  150 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence            778889999999999999986443332  22233333  3678 789999999974211       00023356677777


Q ss_pred             HcCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCC
Q 028362          151 QIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKP  182 (210)
Q Consensus       151 ~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~  182 (210)
                      .++.    .+++++||+++.|          ++++++.+.+.+..+
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            7763    4899999999764          899999998877644

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.80  E-value=7.4e-20  Score=150.77  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=102.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCC--CCCC----------CCCceeeee-------------------eEE-EEEC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNK--FPTD----------YIPTVFDNF-------------------SAN-VVAE   52 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~--~~~~----------~~~~~~~~~-------------------~~~-~~~~   52 (210)
                      .+..++|+++|.+++|||||+++|....  +...          ..++....+                   ... ..+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            3466999999999999999999998543  1111          011111100                   000 1122


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                      .....+.+||+||+++|...+..++..+|++|+|+|++++...+.  ..++..+... ...|+++|+||+|+.....   
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~---  174 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGFDE---  174 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTSCH---
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcccH---
Confidence            234678899999999998888888999999999999988653322  3344444332 1236899999999975311   


Q ss_pred             CCCCCCccCHHHHHHHHHHcC--C--cEEEEeccCCCCCHHHH
Q 028362          133 DHPGLVPVTTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV  171 (210)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~  171 (210)
                         .......++...++..++  .  .+++++||++|.|++++
T Consensus       175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence               000013455666777766  1  47899999999999874

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=3.9e-21  Score=159.63  Aligned_cols=157  Identities=20%  Similarity=0.289  Sum_probs=104.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ++..+|+++|++++|||||+++|....+.....+....... ..+..++  ..+++|||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            46789999999999999999999875443332222211111 1122233  46788999999999999999999999999


Q ss_pred             EEEECCCh---hHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc-cccCCCCCCccCHHHHHHHHHHcC-CcEEEE
Q 028362           85 LAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQIG-ASYYIE  159 (210)
Q Consensus        85 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  159 (210)
                      +|+|+++.   ++.+.+     ..+..  .++|+++++||+|+..... ...........       ++..++ ..++++
T Consensus        80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~-------~~~~~~~~~~~v~  145 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGI-------LPEEWGGESQFVH  145 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCC-------CTTCCSSSCEEEE
T ss_pred             EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhh-------hHHHhCCCccEEE
Confidence            99999874   333322     22222  4789999999999975421 00000000000       111122 248999


Q ss_pred             eccCCCCCHHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +||++|.|++++|+++...
T Consensus       146 vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          146 VSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCTTTCTTCTTHHHHTTTT
T ss_pred             EeeeeccCcchhhhhhhhh
Confidence            9999999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.79  E-value=8.7e-20  Score=143.21  Aligned_cols=160  Identities=19%  Similarity=0.161  Sum_probs=101.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCcee--------------------eeee-------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVF--------------------DNFS-------------   46 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~--------------------~~~~-------------   46 (210)
                      ...++|+|+|.+|||||||+|+|.+..+.+.      ..|+..                    .++.             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            3568999999999999999999998876421      123210                    0000             


Q ss_pred             -----------EEEEEC-CEEEEEEEEeCCCccc-------------ccccCcccccCccEEE-EEEECCChhHHHHHHH
Q 028362           47 -----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLK  100 (210)
Q Consensus        47 -----------~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~  100 (210)
                                 ..+.+. .....+.+|||||...             +..++..+++.++.++ +|+|+++..+.... .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence                       000000 0125789999999642             3345556777888766 79999876544332 2


Q ss_pred             HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      .++..+..  .+.|+++|+||+|+.....          ...+.+......  .+..+++++||+++.|++++++++.+.
T Consensus       183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhCC--CCCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            44555443  4689999999999975432          122222110001  122367789999999999999998763

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.78  E-value=4.4e-19  Score=146.95  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=102.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC-------------------------------CCCceeeeeeEEEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD-------------------------------YIPTVFDNFSANVVA   51 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~-------------------------------~~~~~~~~~~~~~~~   51 (210)
                      .+..++|+++|.+++|||||+++|...  .+...                               .-.|....+ .  .+
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~--~~   80 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-W--KF   80 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-E--EE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-E--EE
Confidence            457799999999999999999999853  22110                               001111111 1  12


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHH---HHHHHHHHHHhccCCCCc-EEEEeeCccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYE---NVLKKWIPELQHYSPGVP-VVLVGTKLDL  124 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~D~  124 (210)
                      ....+.+.+||+||+++|...+...+..+|++|+|+|+++..   +|+   .. ...+..+..  .++| +++|+||+|+
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~--~~v~~iivviNK~Dl  157 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFT--LGVRQLIVAVNKMDS  157 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHH--TTCCEEEEEEECGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHH--cCCCeEEEEEEcccc
Confidence            233467899999999999888888899999999999998763   221   11 222222222  3565 8999999999


Q ss_pred             ccccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 028362          125 REDKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  171 (210)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  171 (210)
                      .....      .......+++..++..++.    .+++++||++|.|++++
T Consensus       158 ~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          158 VKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            74211      0000234556666676663    48999999999998753

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.78  E-value=6.1e-20  Score=152.40  Aligned_cols=159  Identities=19%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC-------------------------------CCCCceeeeeeEEEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-------------------------------DYIPTVFDNFSANVVA   51 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~   51 (210)
                      .+..++|+++|..++|||||+++|..  +.+..                               ..-.|....+ ..+..
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~  118 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFET  118 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEEC
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEec
Confidence            45679999999999999999999974  22210                               0001111110 01222


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HHHHH--HHHHHHHHhccCCCCc-EEEEeeCcccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLR  125 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p-iilv~nK~D~~  125 (210)
                      +  ...+.+||+||+++|...+...+..+|++|+|+|+++..   +|...  ....+..+..  .++| +++++||+|+.
T Consensus       119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEP  194 (467)
T ss_dssp             S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTST
T ss_pred             C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCC
Confidence            3  367889999999999998888999999999999999863   22210  1111222222  3577 99999999996


Q ss_pred             cccccccCCCCCCccCHHHHHHHHHHc-C-----CcEEEEeccCCCCCHHHHH
Q 028362          126 EDKHYLADHPGLVPVTTAQGEELRKQI-G-----ASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~  172 (210)
                      ....   + ........++...++..+ +     ..+++++||++|.|+++++
T Consensus       195 ~~~~---~-~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQW---S-EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSS---C-HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             Cccc---c-HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            4210   0 000002334566666665 3     2479999999999998765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.78  E-value=7.8e-19  Score=149.78  Aligned_cols=158  Identities=13%  Similarity=0.110  Sum_probs=100.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-------------------------------CCceeeee-eEEEEEC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-------------------------------IPTVFDNF-SANVVAE   52 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~~   52 (210)
                      .+..++|+++|.+++|||||+++|......-..                               .+.+.... ...+  .
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~  241 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--S  241 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--E
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--e
Confidence            356799999999999999999999865211000                               00000000 1112  2


Q ss_pred             CEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhH---H--HHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           53 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y--ENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        53 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ...+.+.+|||||+++|...+...+..+|++|+|+|++++..   +  .......+..+... ...|+++|+||+|+...
T Consensus       242 ~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          242 THRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             CSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred             cCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEEecccccch
Confidence            234678899999999999888889999999999999987521   0  01112222222221 22459999999999763


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  171 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  171 (210)
                      ....      .....+++..+....+.    .+++++||++|.|++++
T Consensus       321 ~~~~------~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQR------FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHH------HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHH------HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            2100      00123444555555543    48999999999999876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.78  E-value=4.5e-19  Score=142.95  Aligned_cols=150  Identities=11%  Similarity=0.013  Sum_probs=103.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      +|+++|.+++|||||+++|...      -.|....+   ..+....+.+.+||+||+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~------giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK------GTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE------EEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC------CEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999811      11111111   1223334568999999999998777778899999999999 


Q ss_pred             CChhHHHHHHHHHHHHHhccCCCCcE-EEEee-CcccccccccccCCCCCCccCHHHHHHHHHHcC--CcEEEE--eccC
Q 028362           90 VSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIE--CSSK  163 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~Sa~  163 (210)
                      +... .... ..++..+...  ++|. ++++| |+|+ +...        .....+++.++...++  ..++++  +||+
T Consensus        93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~--------~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA--------IDELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH--------HHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH--------HHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            5432 2222 4555454443  5677 88888 9999 4321        0011245555555443  358999  9999


Q ss_pred             C---CCCHHHHHHHHHHHHhCC
Q 028362          164 T---QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~---~~~i~~~~~~i~~~~~~~  182 (210)
                      +   +.|++++++.+.+.+...
T Consensus       160 ~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhcccc
Confidence            9   999999999998877543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.78  E-value=1e-19  Score=143.12  Aligned_cols=135  Identities=16%  Similarity=0.149  Sum_probs=109.3

Q ss_pred             HHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh-HHHHHHH
Q 028362           23 CMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLK  100 (210)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~  100 (210)
                      +|+.++..+.|. ..+.||+++.+......++   .+.+||+  +++|+.++..+++++|++|+|||++++. ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            678888888898 8889999877664432232   6889999  9999999999999999999999999987 67665 7


Q ss_pred             HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHH
Q 028362          101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      .|+..+..  .++|++||+||+|+.+...          +  +++..++..++. .+++++||+++.|++++|..+..
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            88887765  4799999999999975432          2  456677777662 37899999999999999988754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.78  E-value=7.3e-19  Score=130.95  Aligned_cols=161  Identities=14%  Similarity=-0.001  Sum_probs=98.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc----------ccccCc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----------YNRLRP   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~----------~~~~~~   74 (210)
                      .+..+|+|+|++|||||||++++.+..+.....|+.+..... .+.+++   .+.+||+||...          ++....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            455799999999999999999999776444334444443321 222222   467899999743          222222


Q ss_pred             ccc---cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           75 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        75 ~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                      .++   ..++++++++|++++.+....  .+...+..  .++|+++|+||+|+.....        .....+.+..++..
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~~  168 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA  168 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchh--------HHHHHHHHHHHHHh
Confidence            233   468999999999886554321  22222222  4689999999999865321        00123455555555


Q ss_pred             cC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          152 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       152 ~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+ ...++++||+++.|++++++++.+.+.+
T Consensus       169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            54 3467889999999999999999887654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.77  E-value=1.6e-18  Score=133.82  Aligned_cols=119  Identities=14%  Similarity=0.174  Sum_probs=83.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCccccc-----
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-----   78 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   78 (210)
                      .+.++|+++|.+|+|||||+++|.+...  ...+.+++..........++  ..+.+|||||++++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4679999999999999999999998764  23333333333333444555  47888999999888766555543     


Q ss_pred             ----CccEEEEEEECCChhHHHHHHHHHHHHHhccC-C--CCcEEEEeeCcccccc
Q 028362           79 ----GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED  127 (210)
Q Consensus        79 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~D~~~~  127 (210)
                          .++++++|++++... +......|+..+.... .  ..|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence                789999999987654 4333245665555443 2  3499999999998643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=2.4e-19  Score=152.51  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCCceeeeeeEEEEECC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPT-----------------------------DYIPTVFDNFSANVVAEG   53 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   53 (210)
                      .+..++|+++|.+++|||||+++|+..  .+..                             ...+.+..... ...+..
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~-~~~~~~  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA-STTFES  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee-EEEEEe
Confidence            456799999999999999999999631  1100                             00111111110 011222


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh---HH--HHHHHHHHHHHhccCCCCc-EEEEeeCcccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY--ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED  127 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~  127 (210)
                      ....+.+|||||+++|...+...+..+|++|+|+|++++.   .+  .......+..+..  .++| +|+|+||+|+...
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNKiDl~~~  330 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEECGGGGTT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEeccccccc
Confidence            3467899999999999998888999999999999998532   11  1111122222222  2455 9999999999752


Q ss_pred             cccccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHH
Q 028362          128 KHYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK  169 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~  169 (210)
                      ..      ........++..+. ...+.    .+++++||++|.|++
T Consensus       331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            21      00001223444444 33443    379999999999998

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.76  E-value=5.7e-19  Score=156.93  Aligned_cols=168  Identities=16%  Similarity=0.141  Sum_probs=111.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcC-------CCCC-------CCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSN-------KFPT-------DYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~-------~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ..+..++|+++|.+++|||||+++|...       .+..       ....+.+.++.. ...++.....+.+|||||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            3456799999999999999999999863       1100       001111111110 122333446788999999999


Q ss_pred             ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHHH
Q 028362           69 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE  147 (210)
Q Consensus        69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  147 (210)
                      |.......+..+|++|+|+|+++....+.  ..++..+..  .++| +|+++||+|+.....       ......+++..
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~--lgIP~IIVVINKiDLv~d~e-------~le~i~eEi~e  440 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQ--VGVPYIIVFLNKCDMVDDEE-------LLELVEMEVRE  440 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHH--HTCSCEEEEEECCTTCCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHH--cCCCeEEEEEeecccccchh-------hHHHHHHHHHH
Confidence            98888888999999999999988643332  233344433  2578 789999999975321       00023356677


Q ss_pred             HHHHcCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCC
Q 028362          148 LRKQIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       148 ~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~  182 (210)
                      +...++.    .+++++||+++        .|++++++.+.+.+..+
T Consensus       441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            7777663    48999999999        46889998888766543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=9.5e-18  Score=129.98  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=80.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcc--------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL--------   75 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------   75 (210)
                      ...++|+++|.+|+|||||+|+|.+..+.  ....++............  .+.+.+|||||+.++......        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35799999999999999999999987652  222222222222223333  367889999999877543331        


Q ss_pred             -cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC-CC--CcEEEEeeCcccccc
Q 028362           76 -SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG--VPVVLVGTKLDLRED  127 (210)
Q Consensus        76 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~D~~~~  127 (210)
                       ..+.+|++++|+|++.. ++......|+..+.... .+  .|+++|+||+|+...
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence             13469999999998653 34333346666665442 22  699999999998654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.74  E-value=6.1e-19  Score=138.63  Aligned_cols=162  Identities=13%  Similarity=0.105  Sum_probs=86.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC-CCCCCCC--------Cceeee-eeEEEEECCEEEEEEEEeCCCc-------ccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN-KFPTDYI--------PTVFDN-FSANVVAEGTTVNLGLWDTAGQ-------EDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~i~D~~G~-------~~~   69 (210)
                      -.++|+|+|++|||||||++++.+. .+.....        ++.... ........+....+++||++|+       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998865 4433221        121111 1111222445578999999998       555


Q ss_pred             cccCc-------ccccCc-------------cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc
Q 028362           70 NRLRP-------LSYRGA-------------DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  129 (210)
Q Consensus        70 ~~~~~-------~~~~~~-------------~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  129 (210)
                      +.+..       .+++..             ++++++.+.+. .+++.....   .+.....+.|+++|+||.|+.....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~---~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVA---FMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHH---HHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHH---HHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44433       333222             23444443322 234443222   3333335689999999999965422


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                              .....+++.+++..+++ +++++||+++ |++++|.++.+.+...
T Consensus       173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTT
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcC
Confidence                    00234677888888886 8899999999 9999999999988654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.74  E-value=9e-18  Score=145.29  Aligned_cols=172  Identities=13%  Similarity=0.150  Sum_probs=106.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcee----eee----eEEEEE-CCE----------------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVF----DNF----SANVVA-EGT----------------------   54 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~----~~~----~~~~~~-~~~----------------------   54 (210)
                      ..++|+|+|.+|+|||||+|+|.+..+.+ ...|++.    ..+    ..+..+ ++.                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            56899999999999999999999876432 2233331    000    001111 000                      


Q ss_pred             -----------------------E--EEEEEEeCCCccc---ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHH
Q 028362           55 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL  106 (210)
Q Consensus        55 -----------------------~--~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  106 (210)
                                             .  ..+.+|||||...   ....+..+++.+|++|+|+|++++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                   0  2588999999654   334556678899999999999988777665 5565555


Q ss_pred             hccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH-----HHHHcC-------CcEEEEeccC-----------
Q 028362          107 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIG-------ASYYIECSSK-----------  163 (210)
Q Consensus       107 ~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------~~~~~~~Sa~-----------  163 (210)
                      ..  .+.|+++|+||+|+.......................     +....+       ..+++++||+           
T Consensus       227 ~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          227 KG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             TT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             Hh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            43  3678999999999975431000000000000001111     111111       1368899999           


Q ss_pred             ---CCCCHHHHHHHHHHHHhC
Q 028362          164 ---TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ---~~~~i~~~~~~i~~~~~~  181 (210)
                         ++.|+++++.++.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999887754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.74  E-value=1.1e-17  Score=144.16  Aligned_cols=118  Identities=17%  Similarity=0.091  Sum_probs=81.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----------------eeeee-eEEEEECCEEEEEEEEeCCCc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPT----------------VFDNF-SANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ...+..+|+|+|+.|+|||||+++|...........+                .+..+ .....+....+.+++||+||+
T Consensus         5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY   84 (665)
T ss_dssp             -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence            3456789999999999999999999843221000000                01111 111222223478889999999


Q ss_pred             ccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           67 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        67 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      .+|...+..+++.+|++++|+|+++......  ..++..+..  .++|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHH--ccCCEEEEecCCchh
Confidence            9998888889999999999999987654433  344444433  368999999999986

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.74  E-value=2.1e-17  Score=138.74  Aligned_cols=118  Identities=14%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--CCCCC--------CCC----------ceeeeee-EEEEECCEEEEEEEEeCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--------YIP----------TVFDNFS-ANVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--~~~~~--------~~~----------~~~~~~~-~~~~~~~~~~~~~i~D~~   64 (210)
                      .+..+|+|+|.+|+|||||+++|...  .+...        ...          +.+.++. ....+....+.+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            46799999999999999999999963  12100        000          1111110 011122234778899999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |+.+|...+..+++.+|++|+|+|+++......  ..+...+..  .++|+++++||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            999998888888999999999999987643322  333333332  47899999999998654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.73  E-value=3.3e-17  Score=141.72  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCC------C------------CCCCceeeeeeEEEEECCEEEEEEEEeCC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFP------T------------DYIPTVFDNFSANVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   64 (210)
                      ..+..+|+|+|.+|+|||||+++|..  +.+.      .            ...+|.... ...+...  .+.+.+||||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP   85 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP   85 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence            35679999999999999999999983  2211      0            011111111 1122233  3778899999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |+.+|...+..+++.+|++|+|+|+++..+.... ..|... ..  .++|+++|+||+|+...
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~~-~~--~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQA-EK--YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHH-HH--TTCCEEEEEECTTSTTC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHHH-HH--cCCCEEEEEECCCcccC
Confidence            9999998889999999999999999988777654 445433 22  37899999999998754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.73  E-value=3.9e-17  Score=133.13  Aligned_cols=158  Identities=18%  Similarity=0.174  Sum_probs=103.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC-CCCC-CceeeeeeEEEEECCEEEEEEEEeCCCcccc----cccCccc---ccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFP-TDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---YRGA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~   80 (210)
                      .|+|+|++|||||||++++.+.... ..+. .|..... ..+..++ ...+.+||+||....    ..+...+   +..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~-G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL-GVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE-EEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee-eEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            4789999999999999999876421 1111 1111111 1122232 246788999997532    2232222   3468


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccC---CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      +.+++++|++ ...+.++ ..+...+....   ...|.++|+||+|+... .           ..+.+.......+. ++
T Consensus       237 ~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~v  301 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-AV  301 (416)
T ss_dssp             SEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-CE
T ss_pred             HhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-eE
Confidence            9999999997 4455554 44544444433   36899999999999643 1           23344444444454 78


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCcc
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      +.+||+++.|++++++++.+.+.....
T Consensus       302 i~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          302 LPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEEECCCccCHHHHHHHHHHHHHhccc
Confidence            899999999999999999999976543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.71  E-value=4.8e-18  Score=134.31  Aligned_cols=164  Identities=16%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCC------CCceeeeeeE--------------------------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY------IPTVFDNFSA--------------------------------   47 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~--------------------------------   47 (210)
                      ...++|+|+|.+|||||||+|+|.+..+.+..      .|+.......                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            35679999999999999999999988752211      1210000000                                


Q ss_pred             ------E--------------EE-ECCEEEEEEEEeCCCccc-------------ccccCcccccCccEEEEEEECCChh
Q 028362           48 ------N--------------VV-AEGTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA   93 (210)
Q Consensus        48 ------~--------------~~-~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~   93 (210)
                            .              +. .......+.+|||||...             +...+..++..+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                  0              00 011124688999999754             3345556788999999999985432


Q ss_pred             HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec---cCC---CCC
Q 028362           94 SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS---SKT---QQN  167 (210)
Q Consensus        94 s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S---a~~---~~~  167 (210)
                      ........+...+..  .+.|+++|+||+|+.....          ...+.+.......+ ..++++|   +.+   +.|
T Consensus       182 ~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~----------~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~g  248 (315)
T 1jwy_B          182 LANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT----------DAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKS  248 (315)
T ss_dssp             STTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC----------CCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCC
T ss_pred             hhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch----------HHHHHHhCCCccCC-CCeEEEecCChhhhccCCC
Confidence            110101233334433  4689999999999975432          12222221001111 2455554   444   789


Q ss_pred             HHHHHHHHHHHHhCC
Q 028362          168 VKAVFDAAIKVVIKP  182 (210)
Q Consensus       168 i~~~~~~i~~~~~~~  182 (210)
                      +++++..+.+.+...
T Consensus       249 v~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          249 IRESLKSEILYFKNH  263 (315)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999988887654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.71  E-value=3.4e-17  Score=133.51  Aligned_cols=159  Identities=12%  Similarity=0.083  Sum_probs=83.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC--------CCceeeee-eEEEEECCEEEEEEEEeCCCcccccc-------
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR-------   71 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~-------   71 (210)
                      .++|+|+|++|||||||++.|.+..+....        .++..... .......+....+++||++|...+..       
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            478999999999999999999987653211        12221111 11111234445789999999865411       


Q ss_pred             ------------------cCcccccCccEEEEEEECCCh-hHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc
Q 028362           72 ------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA  132 (210)
Q Consensus        72 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~  132 (210)
                                        +...++.++++.+++|++..- .++......|+..+.   .++|+|+|+||+|+.....   
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e---  184 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE---  184 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence                              123455667766666666543 345554335666664   3789999999999865432   


Q ss_pred             CCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          133 DHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                             +..  +.+.+++..+++ +++++|++++.+++++|..+...+.
T Consensus       185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence                   332  567777788886 7789999999999998888876543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.70  E-value=4.3e-16  Score=134.98  Aligned_cols=118  Identities=16%  Similarity=0.080  Sum_probs=83.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC------------------CCCceeeeeeEEEEE-----CCEEEEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------YIPTVFDNFSANVVA-----EGTTVNLG   59 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~   59 (210)
                      ..+..+|+|+|..|+|||||+++|...  .+...                  .-.|.... ...+..     ++..+.+.
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEE
Confidence            456789999999999999999999742  22110                  00111111 011222     23448899


Q ss_pred             EEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           60 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        60 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +|||||+.+|...+..+++.+|++|+|+|+++....... ..|.. +..  .++|+++|+||+|+...
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~-~~~--~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQ-ANK--YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEeCCCcccc
Confidence            999999999998888999999999999999987655443 33432 222  37899999999998654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.70  E-value=6.6e-18  Score=136.00  Aligned_cols=154  Identities=18%  Similarity=0.140  Sum_probs=99.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee---eee-----------eE-------------------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF---DNF-----------SA-------------------------   47 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~-----------~~-------------------------   47 (210)
                      ...+|+|+|++|||||||+++|.+..+.+....+..   ...           ..                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            446999999999999999999999776332211110   000           00                         


Q ss_pred             --------------EEEE-CCEEEEEEEEeCCCcccc-------------cccCcccccCccEEEEEEECCChhHHHHHH
Q 028362           48 --------------NVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL   99 (210)
Q Consensus        48 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~   99 (210)
                                    ...+ ......+++||+||..++             ..+...++.+++++|+|+|.++.....   
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---
Confidence                          0000 011235789999998776             445567789999999999876543222   


Q ss_pred             HHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHH
Q 028362          100 KKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA  174 (210)
Q Consensus       100 ~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  174 (210)
                      ..|+..+.... .+.|+++|+||+|+.....          ...+.+..+...++. +|+.+|+.++.++++.+..
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence            23333444333 4689999999999976543          334444444444554 7889999998888765544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.69  E-value=4.1e-16  Score=134.91  Aligned_cols=116  Identities=18%  Similarity=0.121  Sum_probs=82.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCCC------------------CCCceeeeeeEEEEECCEEEEEEEEeCC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTD------------------YIPTVFDNFSANVVAEGTTVNLGLWDTA   64 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~   64 (210)
                      ..+..+|+|+|.+|+|||||+++|..  +.+...                  ...|.... ...+..++  +.+.+||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence            45789999999999999999999984  322110                  00011000 11223333  678899999


Q ss_pred             CcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        65 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |+.+|...+..+++.+|++|+|+|+++..+.... ..|.. +..  .++|+++|+||+|+...
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~~-~~~--~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWRQ-ATT--YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHHH-HHH--cCCCEEEEEECCCcccc
Confidence            9999988888899999999999999987766654 44443 333  37899999999998754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.68  E-value=1.4e-16  Score=119.58  Aligned_cols=155  Identities=15%  Similarity=0.043  Sum_probs=95.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee------------EE-EEEC------------------CEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS------------AN-VVAE------------------GTT   55 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~-~~~~------------------~~~   55 (210)
                      +..+|+++|.+|||||||+++|...............++.            .. ..++                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4579999999999999999999865321111111100000            00 1111                  123


Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  135 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~  135 (210)
                      +.+.+||++|+.....   .+...++.+++|+|+++.....   ..+...+     +.|+++|+||+|+.....      
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~------  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVG------  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHT------
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchh------
Confidence            5678899999521111   1112567899999987654211   1122221     478899999999975422      


Q ss_pred             CCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          136 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                          ...++........+ ..+++++||+++.|++++++++.+.+...
T Consensus       172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                34556666665543 34889999999999999999999887654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.67  E-value=1.9e-16  Score=128.67  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=47.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeE---E-----------------EEECC-EEEEEEEEeCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSA---N-----------------VVAEG-TTVNLGLWDTAG   65 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~---~-----------------~~~~~-~~~~~~i~D~~G   65 (210)
                      ++|+|+|.+|||||||+|+|.+........|  |.......   .                 ..+++ ..+.+.+||+||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998763222222  11111111   0                 01232 357899999999


Q ss_pred             ccc----ccccCc---ccccCccEEEEEEECCCh
Q 028362           66 QED----YNRLRP---LSYRGADVFVLAFSLVSR   92 (210)
Q Consensus        66 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~   92 (210)
                      +..    .+.+..   ..++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    222333   457899999999999875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=1.4e-17  Score=125.38  Aligned_cols=153  Identities=17%  Similarity=0.090  Sum_probs=92.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-------------EEEEEC-CEE-----------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-------------ANVVAE-GTT-----------------   55 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~-----------------   55 (210)
                      +.++|+|+|.+|||||||+++|....+...+.++...++.             ....++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            5689999999999999999999987665544555544332             111111 111                 


Q ss_pred             --EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           56 --VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        56 --~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                        ..+.++|++|.-....   .+-...+..+.+.|.........   .+...+     ..|.++|+||+|+.....    
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~----  181 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVG----  181 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHT----
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhH----
Confidence              1344455555211000   01112334556666432211110   011111     468899999999976432    


Q ss_pred             CCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          134 HPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                            ...+++..++..++ ..+++++||+++.|++++|+++.+.+.
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                  45666777776653 348999999999999999999988764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.61  E-value=7.2e-17  Score=129.61  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCC------CCCcee--------------------eeee--------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTD------YIPTVF--------------------DNFS--------------   46 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~------~~~~~~--------------------~~~~--------------   46 (210)
                      ..++|+|+|.+|||||||+|+|.+..+.+.      ..|+..                    .++.              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999998876421      123210                    0000              


Q ss_pred             ----------EEEEEC-CEEEEEEEEeCCCccc-------------ccccCcccccCccEEE-EEEECCChhHHHHHHHH
Q 028362           47 ----------ANVVAE-GTTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFV-LAFSLVSRASYENVLKK  101 (210)
Q Consensus        47 ----------~~~~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~  101 (210)
                                ..+.+. .....+++|||||...             +..+...++..++.++ +|.|.+....-... ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                      000010 1135689999999642             3345555666665454 45565432221111 12


Q ss_pred             HHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          102 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       102 ~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      ++..+..  .+.|+++|+||+|+.....          ...+....  +....+..+++.+||+++.|++++++++.+
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333332  4789999999999975432          11111110  000112235678999999999999998876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.61  E-value=2.3e-14  Score=114.54  Aligned_cols=82  Identities=22%  Similarity=0.212  Sum_probs=55.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECCE---------------EEEEEEEeCCCccccc-
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN-   70 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   70 (210)
                      ++|+|+|.+|||||||+|+|.+........|  |...... .+.+++.               ...+++||+||+.++. 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g-~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG-VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS-EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE-EEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            7899999999999999999998764322222  2222221 2333332               2578999999998763 


Q ss_pred             ---ccCcc---cccCccEEEEEEECCC
Q 028362           71 ---RLRPL---SYRGADVFVLAFSLVS   91 (210)
Q Consensus        71 ---~~~~~---~~~~~~~~i~v~d~~~   91 (210)
                         .+...   .++.+|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               34433   3789999999999986

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=6.8e-16  Score=123.99  Aligned_cols=105  Identities=15%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+.+.+|||||...   .....+..+|++++|+|.........+        .....+.|+++|+||+|+.....     
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l--------~~~~~~~p~ivVlNK~Dl~~~~~-----  234 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI--------KKGVLELADIVVVNKADGEHHKE-----  234 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC--------CTTSGGGCSEEEEECCCGGGHHH-----
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH--------HHhHhhcCCEEEEECCCCcChhH-----
Confidence            36788999999532   122345789999999998765544222        11112469999999999965421     


Q ss_pred             CCCCccCHHHHHHHHHH---cC------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          135 PGLVPVTTAQGEELRKQ---IG------ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~---~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                            .......+...   .+      ..+++++||+++.|++++++++.+.+..
T Consensus       235 ------~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 ------ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             ------HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                  11111222222   21      2478999999999999999999887753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=3.4e-15  Score=131.65  Aligned_cols=118  Identities=14%  Similarity=0.117  Sum_probs=85.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC--CCCCC--------------CC--Cceeeee-eEEEE------------ECC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN--KFPTD--------------YI--PTVFDNF-SANVV------------AEG   53 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~--~~~~~--------------~~--~~~~~~~-~~~~~------------~~~   53 (210)
                      ..+..+|+|+|..++|||||+++|+..  .....              ..  .|+.... ...+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            346789999999999999999999853  11100              00  1111111 11111            244


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      ..+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.....   .++|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            578999999999999999999999999999999999998777765 45554432   4689999999999974

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.57  E-value=3e-15  Score=126.33  Aligned_cols=119  Identities=17%  Similarity=0.155  Sum_probs=78.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC---CCCCCceeeeeeEE------EEECCE----------------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP---TDYIPTVFDNFSAN------VVAEGT----------------------   54 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~------~~~~~~----------------------   54 (210)
                      ...++|+|+|.+|+|||||+|+|.+..+.   ....|++.......      ...+..                      
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45689999999999999999999988763   23333331100000      000000                      


Q ss_pred             -E---------EEEEEEeCCCccc-----------ccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC
Q 028362           55 -T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV  113 (210)
Q Consensus        55 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  113 (210)
                       .         ..+.+|||||...           |...+..++..+|++|+|+|+++....... ..|+..+..  ...
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~--~~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRG--HED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTT--CGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHh--cCC
Confidence             0         2578999999865           334445567889999999999875433333 456655543  357


Q ss_pred             cEEEEeeCcccccc
Q 028362          114 PVVLVGTKLDLRED  127 (210)
Q Consensus       114 piilv~nK~D~~~~  127 (210)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999999654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.56  E-value=4.3e-15  Score=114.24  Aligned_cols=120  Identities=13%  Similarity=-0.016  Sum_probs=67.8

Q ss_pred             EEEEEEeCCCcccccccCc------ccccCccEEEEEEECCChhHHHHHHHHHHHHHh-ccCCCCcEEEEeeCccccccc
Q 028362           56 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~  128 (210)
                      +.+.+|||||+.+......      ..+.. +++++++|.....+.......+..... ....+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5789999999876543322      13355 788888887543222222111111111 111368999999999996542


Q ss_pred             ccccCCCCCCcc--CHHHH------------------HHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          129 HYLADHPGLVPV--TTAQG------------------EELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                      .. ..   ....  ..+..                  .+++..++. .+++++||+++.|++++++++.+.+.
T Consensus       188 ~~-~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK-ER---HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH-HH---HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH-HH---HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            10 00   0000  00000                  001233332 37899999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.53  E-value=2.1e-13  Score=109.55  Aligned_cols=82  Identities=20%  Similarity=0.186  Sum_probs=53.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECC-------------------EEEEEEEEeCCCcc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEG-------------------TTVNLGLWDTAGQE   67 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~   67 (210)
                      ++|+|+|.+|||||||+|++.+........|  |...+... ..+.+                   ....+.+||+||..
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~   80 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV-VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV   80 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE-EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee-EecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence            6899999999999999999997542111111  22222111 11211                   24578999999987


Q ss_pred             cccc----cCc---ccccCccEEEEEEECCC
Q 028362           68 DYNR----LRP---LSYRGADVFVLAFSLVS   91 (210)
Q Consensus        68 ~~~~----~~~---~~~~~~~~~i~v~d~~~   91 (210)
                      .+.+    +..   ..++.+|++++|+|+++
T Consensus        81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             ccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            6532    222   23689999999999985

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.52  E-value=3.3e-14  Score=113.86  Aligned_cols=103  Identities=15%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  135 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~  135 (210)
                      +.+.++||+|....   .......+|.+++|+|.+++.....+ ..  ..     -..|.++|+||+|+.....      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~--~i-----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR--GI-----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH--HH-----HhcCCEEEEeeecCCCchh------
Confidence            56788999995321   23346789999999999876433222 11  11     2458899999999964311      


Q ss_pred             CCCccCHHHHHHHHHHc---------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          136 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                           .......+....         ...+++.+||+++.|++++++++.+.+.
T Consensus       230 -----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 -----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             -----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                 011122222211         1247789999999999999999988653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.51  E-value=2.1e-13  Score=115.05  Aligned_cols=115  Identities=13%  Similarity=0.029  Sum_probs=79.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc--CCCC------------CCCCCce------eeee---eEEEEECCEEEEEEEEeC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS--NKFP------------TDYIPTV------FDNF---SANVVAEGTTVNLGLWDT   63 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~--~~~~------------~~~~~~~------~~~~---~~~~~~~~~~~~~~i~D~   63 (210)
                      +.-+|+|+|..++|||||..+|+.  +...            .......      +.++   ...+..++  +.++++||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            556899999999999999999972  1100            0000000      1111   11223344  77888999


Q ss_pred             CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ||+.+|.......++.+|++|+|+|+...-..+.. ..|.... .  .++|.+++.||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~-~--~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCR-M--RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHH-H--TTCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHH-H--hCCceEEEEecccchhc
Confidence            99999999999999999999999999887655553 4454333 3  37999999999997654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.48  E-value=1.4e-14  Score=115.66  Aligned_cols=105  Identities=16%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+.+.+|||||.......   ....+|++++|+|.+....+..+ ..  ..     .+.|.++|+||+|+.....     
T Consensus       148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~-----  211 (341)
T 2p67_A          148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTN-----  211 (341)
T ss_dssp             TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHH-----
T ss_pred             CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHH-----
Confidence            357889999997554322   46889999999999765432211 00  00     1468899999999965321     


Q ss_pred             CCCCccC--HHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          135 PGLVPVT--TAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       135 ~~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                           ..  .++........+      ..+++++||+++.|++++++++.+.+.
T Consensus       212 -----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 -----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             -----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                 11  112222222222      347889999999999999999988664

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.46  E-value=1.2e-12  Score=102.70  Aligned_cols=97  Identities=16%  Similarity=0.126  Sum_probs=78.5

Q ss_pred             cccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC-HH
Q 028362           66 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TA  143 (210)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~-~~  143 (210)
                      ++++..+...+++++|++++|+|++++. ++..+ ..|+..+..  .++|+++|+||+|+.+...          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHHH
Confidence            7788888888999999999999999986 77765 788877665  5799999999999965421          22 45


Q ss_pred             HHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 028362          144 QGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  176 (210)
Q Consensus       144 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  176 (210)
                      +...+.+..+. +++++||+++.|++++++.+.
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence            56666667776 889999999999999997764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.43  E-value=9.4e-14  Score=101.80  Aligned_cols=108  Identities=6%  Similarity=-0.058  Sum_probs=70.6

Q ss_pred             eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHH---HHHHhccC--CCCcEEEEeeCc-ccccccccccCCC
Q 028362           62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-DLREDKHYLADHP  135 (210)
Q Consensus        62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~--~~~piilv~nK~-D~~~~~~~~~~~~  135 (210)
                      +.+||..++.+|..|+.+.|++|||+|.+|++.++ ...++   ...+....  .++|++|++||. |++..        
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------  178 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------  178 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence            34489999999999999999999999999986443 33333   44444332  578999999995 67544        


Q ss_pred             CCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          136 GLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                          .+..++.+....   ...+.+..|||++|+|+.+.++|+.+.+..+
T Consensus       179 ----ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          179 ----MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             ----CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             ----CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence                333333322211   1345677899999999999999999877544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.40  E-value=2.2e-13  Score=117.81  Aligned_cols=156  Identities=19%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCcee----ee-------------------------------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVF----DN-------------------------------------   44 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~----~~-------------------------------------   44 (210)
                      ...+|+|+|.+++|||||+|+|.+..+ +....+++.    ..                                     
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            567999999999999999999998765 211111110    00                                     


Q ss_pred             ----------eeEEEEECCEEEEEEEEeCCCcccc-------------cccCcccc-cCccEEEEEEECCChhHHHHHHH
Q 028362           45 ----------FSANVVAEGTTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFVLAFSLVSRASYENVLK  100 (210)
Q Consensus        45 ----------~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~  100 (210)
                                ....+... ....+.++||||-...             ..+...++ ..+|++++|+|++......+. .
T Consensus       130 g~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l  207 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  207 (772)
T ss_dssp             CSTTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred             CCCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence                      00000000 1124778999996431             11222233 578999999999865332222 2


Q ss_pred             HHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH----cCCcEEEEeccCCCCCHHHHHHHHH
Q 028362          101 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASYYIECSSKTQQNVKAVFDAAI  176 (210)
Q Consensus       101 ~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~  176 (210)
                      .++..+..  .+.|+++|+||+|+.....          .... ... ...    ++..+++.+||+++.|++++++.+.
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~----------~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~  273 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDLMDEGT----------DARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  273 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTSSCTTC----------CSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEEEeCcccCCcch----------hhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHH
Confidence            34444443  3689999999999976532          1111 111 011    2334567799999999999999988


Q ss_pred             HH
Q 028362          177 KV  178 (210)
Q Consensus       177 ~~  178 (210)
                      +.
T Consensus       274 ~e  275 (772)
T 3zvr_A          274 AE  275 (772)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.38  E-value=8.3e-12  Score=100.31  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=84.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc-------CcccccC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RPLSYRG   79 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~   79 (210)
                      ..+|+|+|.||||||||+|+|.+..... ++..++.+.....+.+++  ..++++|+||...-...       .-..++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            4689999999999999999999865332 222333333333455666  45778999996432111       1124678


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      +|++++|+|++++..-......-+..+...-.+.|.+++.||.|...-..  ...........++...+...+.
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence            99999999999875433322222222222224678889999999643211  1111112245566666665554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.38  E-value=5.8e-12  Score=109.46  Aligned_cols=118  Identities=17%  Similarity=0.118  Sum_probs=79.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc--------CCCCCC--CCCce------eeee---eEEEEEC-----CEEEEEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS--------NKFPTD--YIPTV------FDNF---SANVVAE-----GTTVNLGLW   61 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~--------~~~~~~--~~~~~------~~~~---~~~~~~~-----~~~~~~~i~   61 (210)
                      .+.-+|+|+|+.++|||||..+|+.        +.....  +..+.      +.++   ...+...     ..++.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            3566899999999999999999972        111110  01111      1111   1112222     246889999


Q ss_pred             eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      |||||-+|.......++-+|++|+|+|+...-..+.. ..|.+....   ++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccCc
Confidence            9999999999889999999999999999876555443 344444333   6899999999997543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.34  E-value=3e-13  Score=116.10  Aligned_cols=116  Identities=15%  Similarity=0.043  Sum_probs=78.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc--CCCCCC----CCCce----------eeeee-EEEEECCEEEEEEEEeCCCccccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS--NKFPTD----YIPTV----------FDNFS-ANVVAEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~--~~~~~~----~~~~~----------~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~   70 (210)
                      .-+|+|+|..++|||||..+|+.  +.....    .-.+.          +.++. ......-+++.++++||||+.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            45799999999999999999972  222110    00000          11110 011122244678899999999999


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ......++-+|++|+|+|+...-..+.. ..|......   ++|.+++.||+|....
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEeccccccC
Confidence            9888999999999999999876544432 334433322   6899999999997654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=3.5e-12  Score=97.92  Aligned_cols=108  Identities=7%  Similarity=-0.060  Sum_probs=75.0

Q ss_pred             eCCCcccccccCcccccCccEEEEEEECCChhHHHHHHH---HHHHHHhcc--CCCCcEEEEeeC-cccccccccccCCC
Q 028362           62 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK---KWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHP  135 (210)
Q Consensus        62 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~---~~~~~~~~~--~~~~piilv~nK-~D~~~~~~~~~~~~  135 (210)
                      +.+||+..+.+|..|+.+.|++|||+|.+|++.++ ...   ++...+...  -.++|++|++|| .|+...        
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--------  263 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------  263 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--------
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--------
Confidence            35689999999999999999999999999987543 222   233444332  258999999996 588654        


Q ss_pred             CCCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          136 GLVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                          .+..++.+....   ...+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus       264 ----ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          264 ----MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             ----CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             ----CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence                333333322111   1335667899999999999999999988654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.27  E-value=4.2e-12  Score=101.09  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=62.9

Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH  134 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~  134 (210)
                      .+.+.++||+|...-.   ......+|.+++|+|.........+ ....       ...|.++++||+|+.....     
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~i-------~~~~~ivvlNK~Dl~~~~~-----  210 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKGI-------FELADMIAVNKADDGDGER-----  210 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTTH-------HHHCSEEEEECCSTTCCHH-----
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHHH-------hccccEEEEEchhccCchh-----
Confidence            3568889999974321   1235689999999998654322111 0100       1235577789999743221     


Q ss_pred             CCCCccCHHHHHHHHHHc---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          135 PGLVPVTTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                           ......+.+....   .      ..+++.+||+++.|++++++.+.+...
T Consensus       211 -----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 -----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             -----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                 2222233333321   1      246788999999999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.23  E-value=5.2e-12  Score=101.91  Aligned_cols=88  Identities=16%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCE---------------EEEEEEEeCCCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN   70 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~G~~~~~   70 (210)
                      ..++|+|+|.+|||||||+|+|.+........|...... ...+.+.+.               ...+++||+||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457999999999999999999998765333333222111 122333321               2358999999987754


Q ss_pred             c-------cCcccccCccEEEEEEECCChhH
Q 028362           71 R-------LRPLSYRGADVFVLAFSLVSRAS   94 (210)
Q Consensus        71 ~-------~~~~~~~~~~~~i~v~d~~~~~s   94 (210)
                      +       .+..+++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3       33456789999999999986443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.12  E-value=1.2e-09  Score=88.38  Aligned_cols=85  Identities=19%  Similarity=0.139  Sum_probs=55.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeee-eEEEEECCE---------------EEEEEEEeCCCcccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDY   69 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------------~~~~~i~D~~G~~~~   69 (210)
                      ...++.|+|++|||||||+|.|.+... .....|...... ...+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457999999999999999999998664 333333322111 223444431               135788999996442


Q ss_pred             cc-------cCcccccCccEEEEEEECCC
Q 028362           70 NR-------LRPLSYRGADVFVLAFSLVS   91 (210)
Q Consensus        70 ~~-------~~~~~~~~~~~~i~v~d~~~   91 (210)
                      .+       .....++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            21       22234578999999999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.03  E-value=3.1e-10  Score=91.33  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             CCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHH
Q 028362           64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA  143 (210)
Q Consensus        64 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~  143 (210)
                      ..+++|++++..+.+.++++++|+|++++.      ..|...+.....+.|+++|+||+|+.+..           ...+
T Consensus        54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~  116 (368)
T 3h2y_A           54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHD  116 (368)
T ss_dssp             --CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHH
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHH
Confidence            356789999999999999999999999864      34544555544589999999999997543           2233


Q ss_pred             HH----HHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          144 QG----EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       144 ~~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ..    ..+++..+.  .+++.+||+++.|++++++++.+..
T Consensus       117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            33    333555665  2688999999999999999997654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.91  E-value=9.6e-10  Score=88.55  Aligned_cols=102  Identities=17%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             EeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc
Q 028362           61 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV  140 (210)
Q Consensus        61 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~  140 (210)
                      +....+++|++....+++.++++++|+|++++.+      .|...+.....+.|+++|+||+|+.+..           .
T Consensus        53 ~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~  115 (369)
T 3ec1_A           53 DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------V  115 (369)
T ss_dssp             ------CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------C
T ss_pred             CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------c
Confidence            3334588999999988899999999999998763      2222333333578999999999997643           2


Q ss_pred             CHHHH----HHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          141 TTAQG----EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       141 ~~~~~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ..+..    ..++...+.  ..++.+||+++.|++++++.+.+..
T Consensus       116 ~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          116 KYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             CHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            23333    333555565  3678999999999999999987655

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.77  E-value=4.1e-09  Score=87.76  Aligned_cols=152  Identities=15%  Similarity=0.057  Sum_probs=84.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc------CCC---C-CCCCCcee-----------eeeeEEEE--------------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS------NKF---P-TDYIPTVF-----------DNFSANVV--------------   50 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~------~~~---~-~~~~~~~~-----------~~~~~~~~--------------   50 (210)
                      .+...|+++|.+||||||++++|..      .+.   . +.+.|...           ..+.....              
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999982      211   0 01111100           00000000              


Q ss_pred             ECCEEEEEEEEeCCCccccc-ccCccc-----ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCcc
Q 028362           51 AEGTTVNLGLWDTAGQEDYN-RLRPLS-----YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLD  123 (210)
Q Consensus        51 ~~~~~~~~~i~D~~G~~~~~-~~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D  123 (210)
                      .....+.+.++||||..... .++...     +..+|.+++|+|..........    ...+..   .+|+ ++|+||.|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~---~~~i~gvVlNK~D  251 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD---KVDVASVIVTKLD  251 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH---HHCCCCEEEECTT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh---hcCceEEEEeCCc
Confidence            00033678899999975422 111110     2268999999999875432222    223322   2575 78899999


Q ss_pred             cccccccccCCCCCCccCHHHHHHHHHHcCCc-----------------EEEEeccCCCCC-HHHHHHHHHHH
Q 028362          124 LREDKHYLADHPGLVPVTTAQGEELRKQIGAS-----------------YYIECSSKTQQN-VKAVFDAAIKV  178 (210)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~  178 (210)
                      ......          .    +.......+.+                 +.+.+|+..|.| ++++++++.+.
T Consensus       252 ~~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          252 GHAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             SCCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            864321          1    11222233321                 123378999998 99999888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.71  E-value=3e-07  Score=74.91  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeeeeeEEEEE--CCEEEEEEEEeCCCccccc-----------
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVVA--EGTTVNLGLWDTAGQEDYN-----------   70 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~-----------   70 (210)
                      .++++|+|++|+|||||++.+.+..+....    .+..... ...+..  .+-...++++|++|-....           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            367999999999999999999976543211    1111111 111222  2223468899999853210           


Q ss_pred             --------------ccCc--ccccCc--cE-EEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           71 --------------RLRP--LSYRGA--DV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        71 --------------~~~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                                    ....  ....++  |+ ++++.|...+-+..+  ..++..+.   .+.|+|+|.||+|....
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh---hCCCEEEEEcchhccch
Confidence                          0000  012233  33 445555543322222  23334443   57899999999998644

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.69  E-value=1.6e-07  Score=72.38  Aligned_cols=116  Identities=18%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC--------CCCceeeeeeEEEEEC--CEEEEEEEEeCCCcccccc---c--
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTD--------YIPTVFDNFSANVVAE--GTTVNLGLWDTAGQEDYNR---L--   72 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~---~--   72 (210)
                      .++++|+|++|+|||||++.+.+-.....        ..+.....-...+...  +-...++++|++|-.....   .  
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            47899999999999999999986322110        0111000001111111  1223678999997422100   0  


Q ss_pred             -----------------------CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           73 -----------------------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        73 -----------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                                             ....+..+.+++++.|.... .+......++..+..   ..++++|.+|.|....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHHh---cCcEEEEEeccccCCH
Confidence                                   01112235788888885421 111111233444443   3899999999998543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.61  E-value=2.6e-08  Score=77.24  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=67.7

Q ss_pred             EEeCCCcc-cccccCcccccCccEEEEEEECCChhHHHH-HHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC
Q 028362           60 LWDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL  137 (210)
Q Consensus        60 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~  137 (210)
                      +-..||+. .........+..+|+++.|+|+.++.+..+ ....|+       .++|.++|+||+|+.+..         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~---------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA---------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence            34578875 344445557889999999999999877642 123332       578999999999996532         


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          138 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                         ..+...++.+..+. +++.+||+++.|++++++.+.+.+.
T Consensus        67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence               12233344444455 7889999999999999998877664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.61  E-value=5.4e-09  Score=84.18  Aligned_cols=139  Identities=14%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC------CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccccc----Cccc--
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN------KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL----RPLS--   76 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----~~~~--   76 (210)
                      .+++++|.+|+|||||+|++.+.      .......|.+... ........   .+.++||||-.....+    ....  
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~-~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD-MIEIPLES---GATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE-EEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe-eEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            57999999999999999999975      2211112211111 11122222   2678999996433211    1111  


Q ss_pred             -c---cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc
Q 028362           77 -Y---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI  152 (210)
Q Consensus        77 -~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (210)
                       +   ...+.++++++....-.+..+ . .+..+.  ..+.|+++++||.|......           .......+.+..
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~--~~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~~  303 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIK--GGRRSFVCYMANELTVHRTK-----------LEKADSLYANQL  303 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEE--SSSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHHB
T ss_pred             HHhcccccCceEEEEcCCceEEECCE-E-EEEEcc--CCCceEEEEecCCccccccc-----------HHHHHHHHHHhc
Confidence             1   567888898887322111111 0 011111  14689999999999876542           233344455555


Q ss_pred             CCcEEEEeccCCCCC
Q 028362          153 GASYYIECSSKTQQN  167 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~  167 (210)
                      +. ...+.++.+..+
T Consensus       304 g~-~l~p~~~~~~~~  317 (369)
T 3ec1_A          304 GE-LLSPPSKRYAAE  317 (369)
T ss_dssp             TT-TBCSSCGGGTTT
T ss_pred             CC-ccCCCCchhhhh
Confidence            54 444455544333

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.60  E-value=6e-07  Score=73.06  Aligned_cols=166  Identities=11%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeee-EEEEE-CCEEEEEEEEeCCCcccccccCcc-----cccC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFS-ANVVA-EGTTVNLGLWDTAGQEDYNRLRPL-----SYRG   79 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~   79 (210)
                      ...++|+|++|+|||||+|.+.+-.......-+. +.... ..+.. ....-.+++||++|-.........     -+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            3579999999999999999999743211100000 00000 01111 111114788999985321111111     1223


Q ss_pred             ccEEEEEEECC--ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC-CCCCCccCHHHHHHHHH----Hc
Q 028362           80 ADVFVLAFSLV--SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRK----QI  152 (210)
Q Consensus        80 ~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~  152 (210)
                      .+..++ +|..  .+...     .+...+..  .+.|+++|.||.|+.--+++... .+.......+.+.++..    +.
T Consensus       149 ~~~~~~-lS~G~~~kqrv-----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDI-----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             CSEEEE-EESSCCCHHHH-----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCeEE-eCCCCccHHHH-----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444 6765  22222     22223332  35899999999997522111110 00000012233333331    22


Q ss_pred             C--CcEEEEecc--CCCCCHHHHHHHHHHHHhC
Q 028362          153 G--ASYYIECSS--KTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       153 ~--~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~  181 (210)
                      +  ....+.+|+  .++.|++++.+.+.+.+..
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe  253 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  253 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence            2  235678999  6677899999999877644

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.51  E-value=5.9e-09  Score=83.91  Aligned_cols=113  Identities=10%  Similarity=0.040  Sum_probs=61.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC----ceeeeee-EEEEECCEEEEEEEEeCCCcccccccCc----cc--
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP----TVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRP----LS--   76 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~----~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~----~~--   76 (210)
                      .+++++|.+|+|||||+|++.+..... ....    ..+.+.. ....+.+.   +.++||||......+..    ..  
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            579999999999999999999752111 0011    1111111 11222222   67899999644322111    11  


Q ss_pred             ----ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           77 ----YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        77 ----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                          ....+.++++++....-.+..+  ..+..+.  ..+.|+++++||.|.....
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~--~~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVS--GGRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEE--SSSEEEEEEECTTSCEEEE
T ss_pred             HhccccccCceEEEEcCCCEEEEcce--EEEEEec--CCCceEEEEecCccccccc
Confidence                2456778888876322111111  0011111  1468999999999987654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.39  E-value=3.2e-07  Score=71.09  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=34.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      ...++++++|.+|||||||+|++.+... .....|.+.... ..+....   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~-~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ-QWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeee-EEEEeCC---CEEEEECcCcC
Confidence            3568999999999999999999997653 222222111111 1122222   46789999974

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.35  E-value=2.1e-07  Score=71.36  Aligned_cols=56  Identities=14%  Similarity=0.043  Sum_probs=34.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      ++++++|.+|||||||+|+|.+...... .++.+.+... .+..+   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            6999999999999999999997654221 1222222111 11122   2568899999754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.28  E-value=1.1e-06  Score=71.86  Aligned_cols=140  Identities=16%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC----CCC------CCCCCce-------eeeeeEEEEEC-----------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN----KFP------TDYIPTV-------FDNFSANVVAE-----------------   52 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~----~~~------~~~~~~~-------~~~~~~~~~~~-----------------   52 (210)
                      +...|+++|.+||||||++..|...    ...      +.+.|..       .......+...                 
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999988731    100      1111110       00000011100                 


Q ss_pred             -CEEEEEEEEeCCCcccccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           53 -GTTVNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        53 -~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                       ...+.+.++||+|...... ...     .....++.+++|+|..........    ...+...  -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence             0226788999999543211 000     112357899999999765543332    2233321  23556889999996


Q ss_pred             cccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHH
Q 028362          126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK  169 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  169 (210)
                      ...              ..+.......+. |+..++.  |++++
T Consensus       253 ~~g--------------G~~ls~~~~~g~-PI~fig~--Ge~vd  279 (443)
T 3dm5_A          253 AKG--------------GGALSAVAATGA-PIKFIGT--GEKID  279 (443)
T ss_dssp             SSH--------------HHHHHHHHTTCC-CEEEEEC--SSSTT
T ss_pred             ccc--------------cHHHHHHHHHCC-CEEEEEc--CCChH
Confidence            542              233444555665 5555543  55443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=4.8e-07  Score=69.37  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             CCCcccc-cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccC
Q 028362           63 TAGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT  141 (210)
Q Consensus        63 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~  141 (210)
                      .|||... .......+.++|+++.|+|+.++.+..+.      .+. .. ++|.++|+||+|+.+..            .
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-ll-~k~~iivlNK~DL~~~~------------~   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-FS-RKETIILLNKVDIADEK------------T   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-hc-CCCcEEEEECccCCCHH------------H
Confidence            4666432 23444568899999999999988765432      111 11 78999999999996532            1


Q ss_pred             HHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 028362          142 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      .+...++.+..+. ++ .+||+++.|++++++.+..
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHH
Confidence            2233444445565 56 8999999999999877654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.14  E-value=2e-06  Score=67.23  Aligned_cols=90  Identities=24%  Similarity=0.249  Sum_probs=60.9

Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc--CHHHHHHHH
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV--TTAQGEELR  149 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~  149 (210)
                      +....+.++|.+++|+|+.+|..-.+....++...+.  .++|.+||+||+|+.+...          .  ..+......
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~----------~~~~~~~~~~~y  146 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD----------TEDTIQAYAEDY  146 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH----------HHHHHHHHHHHH
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh----------hHHHHHHHHHHH
Confidence            4445688999999999998776443344666655443  4789999999999975420          0  022333444


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHH
Q 028362          150 KQIGASYYIECSSKTQQNVKAVFDA  174 (210)
Q Consensus       150 ~~~~~~~~~~~Sa~~~~~i~~~~~~  174 (210)
                      +..+. +.+.+||.++.|+++++..
T Consensus       147 ~~~g~-~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          147 RNIGY-DVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             HHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred             HhCCC-eEEEEecCCCCCHHHHHhh
Confidence            44565 6788999999888876643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.14  E-value=1.9e-06  Score=73.10  Aligned_cols=64  Identities=22%  Similarity=0.111  Sum_probs=38.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce-eeeeeE---EEEE-CCEEEEEEEEeCCCcccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSA---NVVA-EGTTVNLGLWDTAGQEDY   69 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~i~D~~G~~~~   69 (210)
                      .+.++|+|+|.+|||||||+|+|.+....-...++. ..+...   .... ......+.++||||....
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~  104 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV  104 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence            467899999999999999999999865211111111 111111   0111 122345778999997543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.00  E-value=4.3e-06  Score=68.50  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=39.4

Q ss_pred             EEEEEEEeCCCcccccc-cC-----cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCC-c-EEEEeeCccccc
Q 028362           55 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLRE  126 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iilv~nK~D~~~  126 (210)
                      .+.+.++||||...... +.     ...+..+|.+++|+|........    .....+.   ... | ..+|+||.|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            46788999999654211 00     01123689999999986654221    2222332   235 6 789999999853

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.93  E-value=1.1e-05  Score=65.86  Aligned_cols=91  Identities=13%  Similarity=0.077  Sum_probs=52.2

Q ss_pred             EEEEEEEeCCCccc--ccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccc
Q 028362           55 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE  126 (210)
Q Consensus        55 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~  126 (210)
                      .+.+.++|+||...  ... +..     ......+.+++|+|........+..    ..+...  -.+..+|+||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a----~~f~~~--~~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA----SRFHQA--SPIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH----HHHHHH--CSSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH----HHHhcc--cCCcEEEEecccccc
Confidence            46678899999643  110 000     0112468999999997665443332    233321  135678999999864


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCH
Q 028362          127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV  168 (210)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  168 (210)
                      .              ...+.......+. |+..++.  |+++
T Consensus       253 ~--------------~G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 K--------------GGGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             C--------------HHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             c--------------chHHHHHHHHHCC-CEEEEEC--CCCh
Confidence            3              2234455555665 7666654  5554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.84  E-value=1.3e-05  Score=68.53  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ..++|+|++|+|||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999998754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.81  E-value=1.7e-05  Score=61.75  Aligned_cols=92  Identities=14%  Similarity=0.080  Sum_probs=53.8

Q ss_pred             EEEEEEEeCCCccc--ccc-cCc-----ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccc
Q 028362           55 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR  125 (210)
Q Consensus        55 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~  125 (210)
                      .+.+.++||||...  ... +..     .....+|.+++|+|........    .....+..   ..| ..+|.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCC
Confidence            46788999999865  211 110     1234689999999986543221    11223322   356 67889999985


Q ss_pred             cccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 028362          126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA  170 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  170 (210)
                      ..              ...+.......+. |+..++  .|+++++
T Consensus       253 ~~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 AK--------------GGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             TT--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             cc--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            32              2234556666775 555554  4666654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.71  E-value=0.00011  Score=58.55  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=55.3

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCcc-CHHHHHHHHHHcCC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV-TTAQGEELRKQIGA  154 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  154 (210)
                      ...++|.+++|.+. +|..-.+....++-..+.  .++|.+||+||+|+.+...          . ..+.........+.
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~----------~~~~~~~~~~y~~~G~  193 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEG----------MDFVNEQMDIYRNIGY  193 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHHTTTC
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchh----------HHHHHHHHHHHHhCCC
Confidence            46889999988665 455333334555544443  3688899999999965421          0 01122223334565


Q ss_pred             cEEEEeccCCCCCHHHHHHHH
Q 028362          155 SYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                       +.+.+||.++.|++++...+
T Consensus       194 -~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          194 -RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             -CEEECBTTTTBTHHHHHHHH
T ss_pred             -cEEEEecCCCcCHHHHHHhc
Confidence             67889999999999887543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.49  E-value=1.7e-06  Score=71.85  Aligned_cols=101  Identities=16%  Similarity=-0.048  Sum_probs=58.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCccc--ccccC--------c
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED--YNRLR--------P   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~   74 (210)
                      .....|+++|.+|+||||+.++|..... ....++...... ......+......+||..|++.  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999999999885422 111222211100 0000011113345789988733  33333        4


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhcc
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY  109 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  109 (210)
                      .++....+.++|+|.++.. .... ..|.+.+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~~-~~~R-~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNTT-RERR-AMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCCS-HHHH-HHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCCC-HHHH-HHHHHHHHhc
Confidence            4565677889999999874 3332 5666665543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.44  E-value=0.00011  Score=52.32  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |.+....--.++|+|++|+||||+++.+..
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            666555556799999999999999998864

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.35  E-value=0.00018  Score=59.07  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+..-|.|+|.+++|||||+|+|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            4566788999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.34  E-value=0.00012  Score=52.64  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      +++|+|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.32  E-value=0.00015  Score=52.16  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=24.2

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +++...+...|+|+|.+|+||||+.+.|...
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3556666678999999999999999988754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.32  E-value=0.00012  Score=52.55  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|||||||++.+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998853

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.25  E-value=0.00015  Score=52.86  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.23  E-value=0.00021  Score=52.38  Aligned_cols=30  Identities=17%  Similarity=0.017  Sum_probs=24.3

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |.+..++...|+|.|.+|+||||+++.|..
T Consensus         3 ~~~~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            3 MTDDKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             TTCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            444444567899999999999999998874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.16  E-value=0.00026  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.095  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|+|++|+|||||++.+...
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46899999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.15  E-value=0.00023  Score=51.81  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999988864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.13  E-value=0.00027  Score=51.15  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+|++|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999853

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.12  E-value=0.00025  Score=51.98  Aligned_cols=25  Identities=20%  Similarity=0.177  Sum_probs=21.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+...|+|+|++|+|||||++.+.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999998875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.11  E-value=0.00016  Score=56.45  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|++|||||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            68999999999999999998643

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.10  E-value=0.00027  Score=52.49  Aligned_cols=23  Identities=9%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --++|+|++|||||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36789999999999999998864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.10  E-value=0.00025  Score=50.46  Aligned_cols=20  Identities=20%  Similarity=0.202  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00034  Score=50.78  Aligned_cols=31  Identities=23%  Similarity=0.132  Sum_probs=23.4

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      |.+-..+...|+|.|.+||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            5555566788999999999999999998864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.07  E-value=0.00033  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.224  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|+|++|+|||||++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999999865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.05  E-value=0.00042  Score=50.57  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|+|++|+|||||+++|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            46889999999999999999853

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.05  E-value=0.00031  Score=51.50  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.05  E-value=0.00032  Score=52.02  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.04  E-value=0.0011  Score=51.70  Aligned_cols=20  Identities=35%  Similarity=0.632  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      .++++|++|||||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.03  E-value=0.0004  Score=50.59  Aligned_cols=25  Identities=20%  Similarity=0.108  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .-.++|+|++|+||||+++.+....
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468999999999999999988653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.01  E-value=0.00041  Score=50.74  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-|+|+|++|||||||+++|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999999754

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.99  E-value=0.00042  Score=48.88  Aligned_cols=22  Identities=9%  Similarity=0.025  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998743

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.98  E-value=0.00043  Score=48.79  Aligned_cols=19  Identities=16%  Similarity=0.090  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICY   28 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l   28 (210)
                      -|+|.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.96  E-value=0.00057  Score=49.05  Aligned_cols=23  Identities=13%  Similarity=0.008  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+|+||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.96  E-value=0.00046  Score=48.84  Aligned_cols=23  Identities=17%  Similarity=0.120  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..|+|+|++|+||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999988753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.96  E-value=0.00049  Score=50.13  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .--|+|+|++|+||||+++.+..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.95  E-value=0.00048  Score=48.94  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|+|++|+||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.95  E-value=0.00053  Score=51.22  Aligned_cols=30  Identities=17%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             CCCCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            1 MASSASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         1 m~~~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |+++.-..+++.|+|++||||||+..+|..
T Consensus         1 ~~~~~~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            1 MAHHHHHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --------CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcccccccceeeECCCCCCHHHHHHHHHH
Confidence            677777889999999999999999998874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.94  E-value=0.00053  Score=50.68  Aligned_cols=25  Identities=24%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++...|+|.|.+||||||+.+.|..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.93  E-value=0.00052  Score=48.74  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-|+|.|.+|+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.00059  Score=49.65  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-.|+|+|++|+||||+.+.|..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999998874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.92  E-value=0.00055  Score=50.35  Aligned_cols=22  Identities=18%  Similarity=0.113  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.90  E-value=0.00058  Score=50.25  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++|+|.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.90  E-value=0.00057  Score=50.10  Aligned_cols=26  Identities=12%  Similarity=0.018  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+-..|+|+|++|+|||||++.+.+-
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999988753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.90  E-value=0.00055  Score=49.24  Aligned_cols=21  Identities=19%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999974

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.90  E-value=0.0006  Score=51.36  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHH
Q 028362            8 FIKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~   29 (210)
                      .-.|+|+|++|+||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999988

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.88  E-value=0.00077  Score=50.78  Aligned_cols=25  Identities=12%  Similarity=0.077  Sum_probs=22.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+..+|+|.|++||||||++++|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.87  E-value=0.00059  Score=47.97  Aligned_cols=23  Identities=22%  Similarity=0.109  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      -++|+|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999888654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.87  E-value=0.00055  Score=51.40  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3689999999999999877753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.86  E-value=0.00065  Score=54.15  Aligned_cols=23  Identities=22%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|++|||||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999999754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.84  E-value=0.00063  Score=49.80  Aligned_cols=25  Identities=20%  Similarity=0.022  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++...|+|.|.+||||||+++.|..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.83  E-value=0.00072  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998874

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.00068  Score=49.34  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..|+|+|.+|+||||+++.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988743

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.83  E-value=0.00071  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -|+|.|.+|+||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999998853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.81  E-value=0.00084  Score=49.67  Aligned_cols=22  Identities=14%  Similarity=0.101  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..|+|+|++|+||||+++.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.81  E-value=0.00093  Score=48.57  Aligned_cols=25  Identities=12%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .....|+|.|.+|+||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.80  E-value=0.001  Score=47.59  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.79  E-value=0.0007  Score=50.29  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+||||||+++.|..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.78  E-value=0.0007  Score=48.60  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+||||||+++.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.78  E-value=0.00087  Score=48.57  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.78  E-value=0.00064  Score=50.61  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999877653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.77  E-value=0.00081  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.77  E-value=0.001  Score=47.84  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.76  E-value=0.00076  Score=48.86  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            478999999999999998775

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.76  E-value=0.0012  Score=47.92  Aligned_cols=25  Identities=12%  Similarity=0.074  Sum_probs=21.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+...|+|.|.+|+||||+.+.|..
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998874

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.75  E-value=0.0011  Score=48.33  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.74  E-value=0.00091  Score=47.94  Aligned_cols=22  Identities=23%  Similarity=0.080  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..|+|.|.+||||||+++.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998874

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.73  E-value=0.001  Score=47.45  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+|+||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999998874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.73  E-value=0.0007  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|+|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.73  E-value=0.00085  Score=49.61  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999887754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.72  E-value=0.001  Score=47.78  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..-|+|.|.+|+||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.72  E-value=0.00085  Score=51.21  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3689999999999999877754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.72  E-value=0.00084  Score=51.60  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3689999999999999877754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.71  E-value=0.0012  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.|+|+|++|+||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999975

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.71  E-value=0.0011  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.087  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..|+++|++|+||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.70  E-value=0.00087  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999887754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.70  E-value=0.00087  Score=49.29  Aligned_cols=21  Identities=14%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998874

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.70  E-value=0.00092  Score=48.66  Aligned_cols=22  Identities=14%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+|+|+|++|+||||+++.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.69  E-value=0.0013  Score=47.81  Aligned_cols=24  Identities=21%  Similarity=0.019  Sum_probs=21.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...|+|.|.+|+||||+++.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999998865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.69  E-value=0.00093  Score=51.12  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            3589999999999999888754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.68  E-value=0.00091  Score=50.87  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999887754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.66  E-value=0.0012  Score=47.23  Aligned_cols=23  Identities=17%  Similarity=0.020  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-++|.|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.66  E-value=0.001  Score=48.43  Aligned_cols=25  Identities=12%  Similarity=0.053  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +.--|+|+|++|+||||+++.+...
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456899999999999999887743

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.66  E-value=0.00099  Score=50.80  Aligned_cols=21  Identities=14%  Similarity=0.238  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.65  E-value=0.001  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4689999999999999887754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.65  E-value=0.00064  Score=50.64  Aligned_cols=20  Identities=20%  Similarity=0.059  Sum_probs=14.7

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      -++|+|++|+|||||++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.65  E-value=0.001  Score=49.66  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999887754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.64  E-value=0.0011  Score=49.90  Aligned_cols=22  Identities=14%  Similarity=0.107  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999887754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.64  E-value=0.0011  Score=50.08  Aligned_cols=22  Identities=18%  Similarity=0.117  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999887654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.64  E-value=0.001  Score=50.04  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999887754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.63  E-value=0.0011  Score=50.14  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999988864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.63  E-value=0.0011  Score=50.50  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999887754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.62  E-value=0.0011  Score=50.21  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999887754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.61  E-value=0.0012  Score=51.54  Aligned_cols=22  Identities=14%  Similarity=0.090  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6899999999999999987743

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.60  E-value=0.0012  Score=50.43  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999888864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.60  E-value=0.00084  Score=49.41  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.59  E-value=0.001  Score=51.76  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++++|++|+|||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.59  E-value=0.001  Score=49.22  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|++||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.59  E-value=0.0014  Score=48.56  Aligned_cols=21  Identities=14%  Similarity=0.079  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.58  E-value=0.0013  Score=47.43  Aligned_cols=24  Identities=17%  Similarity=0.034  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.58  E-value=0.0015  Score=45.80  Aligned_cols=21  Identities=14%  Similarity=0.104  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|.|.+|+||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.58  E-value=0.0013  Score=50.12  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4689999999999999887754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.57  E-value=0.0012  Score=50.65  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999877754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.56  E-value=0.0013  Score=48.56  Aligned_cols=24  Identities=13%  Similarity=0.104  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+|+||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.55  E-value=0.0014  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999877754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.55  E-value=0.0016  Score=50.27  Aligned_cols=25  Identities=16%  Similarity=0.082  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+..-|+|.|++||||||++++|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999974

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.55  E-value=0.0013  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999887754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.54  E-value=0.0019  Score=47.83  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=18.4

Q ss_pred             eE-EEEECCCCCCHHHHHHHHHc
Q 028362            9 IK-CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~k-v~llG~~~~GKStli~~l~~   30 (210)
                      .| |+|+|+|||||+|.+.+|..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            44 46789999999999998874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.53  E-value=0.0017  Score=48.88  Aligned_cols=24  Identities=21%  Similarity=0.082  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +..-|.|+|+.|+|||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.51  E-value=0.0014  Score=50.13  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999887654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.49  E-value=0.0021  Score=46.88  Aligned_cols=25  Identities=16%  Similarity=0.076  Sum_probs=21.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +...|+|+|++|+||||+++.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999988864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.48  E-value=0.0019  Score=45.86  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...+.|.|.+|+|||||+.++...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346889999999999999998853

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.48  E-value=0.0021  Score=50.27  Aligned_cols=25  Identities=20%  Similarity=0.089  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+..-|+|+|++|+|||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4456789999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.48  E-value=0.0013  Score=48.58  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+...
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.47  E-value=0.0019  Score=48.73  Aligned_cols=26  Identities=15%  Similarity=0.072  Sum_probs=21.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+.+.|+|.|.+|+||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.45  E-value=0.0018  Score=49.47  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.002  Score=48.04  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+|+||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.45  E-value=0.002  Score=46.25  Aligned_cols=21  Identities=19%  Similarity=-0.026  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.44  E-value=0.0024  Score=49.40  Aligned_cols=26  Identities=15%  Similarity=0.018  Sum_probs=22.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+...|+|.|++|+|||||++.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999987763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.43  E-value=0.0023  Score=50.27  Aligned_cols=25  Identities=20%  Similarity=0.044  Sum_probs=21.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...+-|.|.|++|||||||++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567799999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.43  E-value=0.0014  Score=47.33  Aligned_cols=23  Identities=13%  Similarity=0.024  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+|+||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.43  E-value=0.0013  Score=52.49  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-+++|+|++|+|||||++.+.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.42  E-value=0.0024  Score=47.01  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.42  E-value=0.0014  Score=46.71  Aligned_cols=23  Identities=22%  Similarity=-0.041  Sum_probs=16.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...|+|.|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.41  E-value=0.0012  Score=45.79  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.40  E-value=0.0021  Score=45.67  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.40  E-value=0.0029  Score=45.27  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +...|+|.|.+|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346789999999999999998874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.39  E-value=0.0018  Score=49.64  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999988763

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.38  E-value=0.0022  Score=45.19  Aligned_cols=21  Identities=19%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.38  E-value=0.0026  Score=46.27  Aligned_cols=25  Identities=16%  Similarity=0.016  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+..-|+|+|++|+||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.37  E-value=0.00079  Score=47.97  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+..-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999988753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.35  E-value=0.0026  Score=48.36  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..-|+|.|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.35  E-value=0.002  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.34  E-value=0.0022  Score=48.59  Aligned_cols=21  Identities=29%  Similarity=0.238  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|+|+|++|+|||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.34  E-value=0.0018  Score=51.61  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|++|+|||||++.+.+-.
T Consensus        33 ~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           33 LFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCchHHHHHHHHhcCC
Confidence            6899999999999998877643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.34  E-value=0.0018  Score=49.05  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+...|+++|++|+||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.33  E-value=0.0022  Score=51.12  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999888754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.32  E-value=0.0024  Score=45.62  Aligned_cols=21  Identities=29%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|.+|+||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.31  E-value=0.0028  Score=47.89  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      ..|+|+|++|+||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.30  E-value=0.0021  Score=50.07  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      --++|+|++||||||+++.+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            468899999999999999887

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.30  E-value=0.0023  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            3689999999999999888754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.30  E-value=0.0023  Score=51.38  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+.+-
T Consensus        32 ~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEcCCCchHHHHHHHHHcC
Confidence            689999999999999888754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.29  E-value=0.0014  Score=51.19  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            5789999999999999777643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.29  E-value=0.0031  Score=48.57  Aligned_cols=25  Identities=16%  Similarity=0.084  Sum_probs=21.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998873

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.29  E-value=0.00078  Score=49.33  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|+|.|.+|+||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.29  E-value=0.0024  Score=51.01  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+.+-
T Consensus        57 ~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           57 YGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEcCCCchHHHHHHHHhcC
Confidence            579999999999999877754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.27  E-value=0.0024  Score=50.97  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            3689999999999999888754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.27  E-value=0.0036  Score=45.39  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=22.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-..+.|.|.|.+||||||+.+.|...
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHh
Confidence            346789999999999999999988754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.25  E-value=0.0023  Score=50.98  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999988753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.25  E-value=0.0025  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.148  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      --++++|+.|+||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999998874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.25  E-value=0.0022  Score=49.60  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4689999999999999887754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.24  E-value=0.0026  Score=50.99  Aligned_cols=22  Identities=27%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3589999999999999887754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.23  E-value=0.0026  Score=51.02  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+.+-
T Consensus        32 ~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           32 MILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCcHHHHHHHHHHcC
Confidence            689999999999999887754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.21  E-value=0.0029  Score=47.32  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.+.|+|.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998873

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.21  E-value=0.0026  Score=50.14  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.--++++|++|+||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446789999999999999998874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.20  E-value=0.0029  Score=45.01  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      -..|+|.|.+|+||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.20  E-value=0.0042  Score=46.27  Aligned_cols=25  Identities=16%  Similarity=-0.020  Sum_probs=21.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +-.-|+|.|++|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467999999999999999988854

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.19  E-value=0.0019  Score=48.04  Aligned_cols=25  Identities=20%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +-.-|+|.|+.|+||||+++.+...
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457899999999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.19  E-value=0.0036  Score=43.98  Aligned_cols=22  Identities=18%  Similarity=0.084  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.17  E-value=0.0027  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.14  E-value=0.0032  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3789999999999999988843

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.13  E-value=0.0027  Score=50.76  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.13  E-value=0.003  Score=48.34  Aligned_cols=21  Identities=29%  Similarity=0.376  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|++|+|||||++.+...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999988864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.12  E-value=0.0029  Score=50.79  Aligned_cols=22  Identities=14%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+||||+++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.12  E-value=0.0035  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.081  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +..-|+|+|++|+|||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.08  E-value=0.0033  Score=44.78  Aligned_cols=21  Identities=19%  Similarity=0.079  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.08  E-value=0.0035  Score=47.34  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||||++.+...
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999999999988753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.07  E-value=0.0027  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45799999999999999988753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.06  E-value=0.0037  Score=45.75  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..-|+|.|.+|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.05  E-value=0.0027  Score=50.09  Aligned_cols=22  Identities=18%  Similarity=0.262  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.04  E-value=0.0022  Score=50.95  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            3689999999999999887754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.03  E-value=0.0039  Score=46.12  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988753

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.02  E-value=0.0038  Score=45.23  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.00  E-value=0.0036  Score=47.37  Aligned_cols=22  Identities=23%  Similarity=0.054  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.|+|+|++|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.99  E-value=0.0034  Score=50.63  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            468999999999999988775

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.97  E-value=0.004  Score=49.66  Aligned_cols=23  Identities=26%  Similarity=0.086  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .--++++|+.|+||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34688999999999999998874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.97  E-value=0.0038  Score=50.82  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998864

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.92  E-value=0.0045  Score=47.81  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-|+|.|.+|+||||+.++|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999885

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.90  E-value=0.022  Score=45.47  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 028362           11 CVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~   29 (210)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4699999999999999877

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.89  E-value=0.0049  Score=45.06  Aligned_cols=21  Identities=24%  Similarity=0.110  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.89  E-value=0.0051  Score=42.23  Aligned_cols=25  Identities=12%  Similarity=-0.056  Sum_probs=21.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ...|+|.|++|+|||++.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3468999999999999999887653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.87  E-value=0.0022  Score=51.11  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999887754

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.85  E-value=0.0053  Score=45.65  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.0037  Score=51.56  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999988753

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.82  E-value=0.0061  Score=42.21  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 028362           11 CVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~   29 (210)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999999876

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.82  E-value=0.0043  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|++|+||||+++.+.+-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999988643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.81  E-value=0.0067  Score=47.94  Aligned_cols=23  Identities=35%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-|+|.|++|||||||..+|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999988853

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.80  E-value=0.0048  Score=48.99  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ++.|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999888764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.79  E-value=0.0044  Score=47.85  Aligned_cols=22  Identities=9%  Similarity=0.134  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999988754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.78  E-value=0.0059  Score=44.92  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|.|++|+||||+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.77  E-value=0.0059  Score=44.34  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|.|++|+|||++++.+...
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.72  E-value=0.0057  Score=47.10  Aligned_cols=24  Identities=17%  Similarity=0.121  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999988764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.72  E-value=0.0056  Score=46.80  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346999999999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.69  E-value=0.0075  Score=44.94  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+...|+|+|.+|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999999998874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.68  E-value=0.0036  Score=48.45  Aligned_cols=24  Identities=8%  Similarity=0.192  Sum_probs=17.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.+-|+|.|++|+||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.68  E-value=0.0064  Score=45.77  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.68  E-value=0.0043  Score=47.12  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+...|+|.|.+|+||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            35578999999999999999887754

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.67  E-value=0.0091  Score=49.54  Aligned_cols=23  Identities=26%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .--++|+|.+|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            34688999999999999998873

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.60  E-value=0.0066  Score=48.75  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      --++|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999998884

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.59  E-value=0.0066  Score=47.45  Aligned_cols=23  Identities=22%  Similarity=0.192  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --++|.|++|+|||||++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.57  E-value=0.0078  Score=50.66  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999888864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.57  E-value=0.0078  Score=46.54  Aligned_cols=25  Identities=12%  Similarity=-0.096  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+.-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456777799999999999988754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.56  E-value=0.0044  Score=48.58  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .--++|+|..|+|||||++.+.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            345789999999999999999965

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.56  E-value=0.007  Score=46.95  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            35899999999999999988864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.55  E-value=0.0094  Score=46.75  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.51  E-value=0.007  Score=49.62  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999888764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.49  E-value=0.019  Score=44.70  Aligned_cols=43  Identities=14%  Similarity=0.257  Sum_probs=25.2

Q ss_pred             cEEEEEEECCChhH-HHHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362           81 DVFVLAFSLVSRAS-YENVLKKWIPELQHYSPGVPVVLVGTKLDL  124 (210)
Q Consensus        81 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~piilv~nK~D~  124 (210)
                      ..-++++|=.+.-+ -.. ...++..++....+.++|+..|..+.
T Consensus       105 ~~~vliiDEi~~l~~~~~-~~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAES-QRHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCCGGGHHH-HHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcccCcHHH-HHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            45556666554433 222 25566666665567788888887663

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.48  E-value=0.0077  Score=49.90  Aligned_cols=21  Identities=14%  Similarity=0.319  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999998873

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.47  E-value=0.0085  Score=43.62  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ..|+|+|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.46  E-value=0.012  Score=44.65  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .....++|.|++|+|||++++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44567999999999999999988764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.45  E-value=0.0092  Score=43.21  Aligned_cols=21  Identities=19%  Similarity=0.159  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|+|.|++|+||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.45  E-value=0.0077  Score=50.70  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|+.|+|||||++.+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4689999999999999888864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.42  E-value=0.0067  Score=44.42  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .+++.|+||+||||++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999887764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.41  E-value=0.011  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ....++|.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.0088  Score=51.08  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.36  E-value=0.0097  Score=50.58  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999887754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.35  E-value=0.01  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.148  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.32  E-value=0.0085  Score=50.94  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            5789999999999999877654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.27  E-value=0.014  Score=47.54  Aligned_cols=25  Identities=20%  Similarity=0.100  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...-|+|+|.+|+||||+.++|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999998753

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.26  E-value=0.0087  Score=47.49  Aligned_cols=24  Identities=21%  Similarity=0.105  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .--++|.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.25  E-value=0.01  Score=44.18  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999877764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.25  E-value=0.0096  Score=45.55  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.25  E-value=0.017  Score=44.66  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36899999999999999988754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.23  E-value=0.0092  Score=46.28  Aligned_cols=21  Identities=29%  Similarity=0.251  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      -.++++|++|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999999776

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.23  E-value=0.012  Score=43.86  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-|++-|.+|+||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            56899999999999999988854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.20  E-value=0.0088  Score=47.20  Aligned_cols=20  Identities=15%  Similarity=0.215  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      ++|.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.19  E-value=0.011  Score=46.30  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999988864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.16  E-value=0.0054  Score=42.03  Aligned_cols=23  Identities=9%  Similarity=0.095  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..|+|.|++|+|||++++.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            45899999999999999776643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.16  E-value=0.011  Score=46.57  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      +++.|++|+||||+++.+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.15  E-value=0.011  Score=46.99  Aligned_cols=22  Identities=23%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.14  E-value=0.012  Score=50.28  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999888764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.13  E-value=0.014  Score=46.09  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-|+|+|++|||||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998853

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.11  E-value=0.013  Score=45.63  Aligned_cols=22  Identities=23%  Similarity=0.155  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      --++++|++|+||||++..+..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            4578999999999999997773

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.11  E-value=0.017  Score=42.78  Aligned_cols=26  Identities=15%  Similarity=-0.006  Sum_probs=21.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+..-|++-|.+|+||||+++.+..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556799999999999999998874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.11  E-value=0.018  Score=44.83  Aligned_cols=24  Identities=25%  Similarity=0.164  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-|+|+|++|||||||...+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            345789999999999999999743

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.10  E-value=0.014  Score=45.60  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -|+|.|++|||||||..++...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999999754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.10  E-value=0.012  Score=46.01  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999988754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.08  E-value=0.013  Score=42.95  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+.|+|.|.+|+||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.07  E-value=0.015  Score=42.43  Aligned_cols=19  Identities=21%  Similarity=0.401  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 028362           11 CVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~   29 (210)
                      .+|+|+.|+|||||+..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4788999999999999775

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=95.03  E-value=0.019  Score=42.15  Aligned_cols=30  Identities=20%  Similarity=0.181  Sum_probs=22.9

Q ss_pred             CCC-CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         1 m~~-~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |++ +.-..+-|.|.|..|+||||+.+.|..
T Consensus         1 ~~~~~~~~~~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A            1 MAHHHHHHMYAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             -----CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcccccceeEEEEECCCCCCHHHHHHHHHH
Confidence            452 344668999999999999999998875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.02  E-value=0.018  Score=42.33  Aligned_cols=24  Identities=13%  Similarity=-0.004  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +-.-|+|.|.+|+||||+++.+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            346689999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.02  E-value=0.013  Score=49.40  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999888764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.01  E-value=0.0099  Score=50.70  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++++|++|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6799999999999999877643

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.00  E-value=0.013  Score=46.03  Aligned_cols=21  Identities=24%  Similarity=0.379  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|.|++|+||||+++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.00  E-value=0.015  Score=45.32  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=94.99  E-value=0.012  Score=43.88  Aligned_cols=24  Identities=25%  Similarity=0.128  Sum_probs=17.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +-.-|+|.|.+|+||||+++.+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.99  E-value=0.015  Score=48.88  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.014  Score=47.60  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998854

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.97  E-value=0.0061  Score=46.19  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999988753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.95  E-value=0.016  Score=41.16  Aligned_cols=24  Identities=13%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .-|++.|++|+||||+.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.94  E-value=0.016  Score=49.51  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999888643

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.94  E-value=0.015  Score=43.91  Aligned_cols=24  Identities=13%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .-++|.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999888653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.91  E-value=0.012  Score=46.73  Aligned_cols=25  Identities=16%  Similarity=0.093  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-.++|.|++|+|||++++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3447899999999999999988753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.89  E-value=0.025  Score=44.90  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=20.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ...+|+|+|++|+||||+.+.+..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999986653

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.88  E-value=0.015  Score=45.57  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46899999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.87  E-value=0.015  Score=47.46  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999998864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.86  E-value=0.015  Score=47.74  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --++|.|++|+|||||++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            45899999999999999988753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.85  E-value=0.013  Score=46.43  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++|.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.85  E-value=0.0088  Score=50.81  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++++|++|+|||||++.+.+
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g  389 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPR  389 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            578999999999999976554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.83  E-value=0.014  Score=46.26  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999988653

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=94.80  E-value=0.061  Score=44.12  Aligned_cols=63  Identities=19%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc------------------CCCCC--C-CCCceeeeeeE-EEEE---CCEEEEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS------------------NKFPT--D-YIPTVFDNFSA-NVVA---EGTTVNLGL   60 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~------------------~~~~~--~-~~~~~~~~~~~-~~~~---~~~~~~~~i   60 (210)
                      .+..=|.|+|..++|||+|+|.+..                  ..|..  . ..-|.+.-... ...+   ++....+.+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            3556667999999999999995541                  22321  1 11122332221 1111   567788999


Q ss_pred             EeCCCccc
Q 028362           61 WDTAGQED   68 (210)
Q Consensus        61 ~D~~G~~~   68 (210)
                      .||.|...
T Consensus       145 lDTEG~~d  152 (457)
T 4ido_A          145 MDTQGTFD  152 (457)
T ss_dssp             EEECCBTC
T ss_pred             EeccCCCC
Confidence            99999644

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.80  E-value=0.018  Score=45.09  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4789999999999999998754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.78  E-value=0.017  Score=45.94  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.|+|.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988854

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.017  Score=47.27  Aligned_cols=24  Identities=17%  Similarity=0.128  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .--|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999998854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.017  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999998888643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=94.77  E-value=0.025  Score=42.00  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=19.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHH
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~   29 (210)
                      .-.++|++.|.+||||||++-.+.
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHH
Confidence            345899999999999999965444

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=94.77  E-value=0.017  Score=46.17  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=20.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...++|.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.77  E-value=0.011  Score=50.26  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++++|++|+|||||++.+.+
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999976664

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.75  E-value=0.017  Score=45.89  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||++++.+...
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999988754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.71  E-value=0.016  Score=48.76  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+|||||++.+..
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.71  E-value=0.018  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.++|.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.71  E-value=0.016  Score=47.87  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.++|+|++|+|||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-47
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-43
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-42
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-40
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	4e-39
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-38
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-37
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-36
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-34
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-33
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-33
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-33
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-33
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-32
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-32
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-32
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-31
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-31
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-29
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-28
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-28
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-27
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-27
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-27
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-26
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-26
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-26
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-25
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-24
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-24
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-22
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-21
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-21
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-20
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-20
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-20
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-17
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-17
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-16
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-16
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-16
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-15
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-15
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-14
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-13
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-05

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 99/192 (51%), Positives = 135/192 (70%), Gaps = 6/192 (3%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           IKCV VGDGAVGKTC+LI YT+NKFP++Y+PTVFDN++  V+  G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR+D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 129 HYLADHPG--LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 186
             +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD AI   ++PP+  
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE-- 181

Query: 187 KEKKKKQRGCLL 198
              KK +R  LL
Sbjct: 182 --PKKSRRCVLL 191

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 2e-43
 Identities = 92/185 (49%), Positives = 133/185 (71%), Gaps = 3/185 (1%)

Query: 1   MASS-ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLG 59
           MA    +  +KCV VGDGAVGKTC+L+ Y ++ FP +Y+PTVFD+++ +V   G    LG
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG 60

Query: 60  LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 119
           L+DTAGQEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+G
Sbjct: 61  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG 120

Query: 120 TKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           T++DLR+D   L   +     P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI 
Sbjct: 121 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 180

Query: 178 VVIKP 182
            ++ P
Sbjct: 181 AILTP 185

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 2e-42
 Identities = 109/181 (60%), Positives = 137/181 (75%), Gaps = 2/181 (1%)

Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
           + + IKCV VGDGAVGKTC+LI YT+N FP +YIPTVFDN+SANV+ +G  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 124
           GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 125 REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+ P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 183 P 183
           P
Sbjct: 182 P 182

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  134 bits (338), Expect = 1e-40
 Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
           +K + +GD  VGK+C+L+ +  +KF   +I T+  +F    V   G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YRGA   +L + +    ++ N+ + +    +H +    ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                        T  QGE L K++G   +IE S+K   NV  +F    K++ +
Sbjct: 123 VV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 4e-39
 Identities = 82/175 (46%), Positives = 117/175 (66%), Gaps = 2/175 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V VGDGA GKTC+LI  + ++FP  Y+PTVF+N+ A++  +G  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DLR D+
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 129 HYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           H   +       PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  ++
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  128 bits (321), Expect = 3e-38
 Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 3/176 (1%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V VGD   GKT +L  +  + FP +Y+PTVF+N++A+   +   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 129 HYLADHP--GLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 181
             L +       PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (320), Expect = 1e-37
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
            K + +G+  VGK+C+L+ ++ + +  DYI T+  +F    V  +G TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YRG+   ++ + +  + S+  V        ++ +  V  +LVG K DL++ 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 187
           +    D             +         ++E S+    NV+  F    + + +   +Q 
Sbjct: 127 RVVEYDVA-----------KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 188 EKKKKQR 194
             +  Q+
Sbjct: 176 LNETTQK 182

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 1e-36
 Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
            K V +G+  VGKTC++  +T   FP     T+  +F    V   G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YR A+  +L + +    S+  + +      Q+ S  V  VLVG K+DL E 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +                  E   +    YY+E S+K   NV+ +F      +I 
Sbjct: 126 REVSQQRA-----------EEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 2e-36
 Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 12/178 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 67
            K + +GD  VGKTC+L  ++ + F + +I T+  +F    +  +G  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YRGA   +L + + +  S++N+        +H S  V  +++G K D+ + 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
           +            +  +GE+L    G   ++E S+K   NV+  F    + +     K
Sbjct: 127 RQV----------SKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMDK 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-34
 Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 12/179 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K V +GD  VGK+ +L  +T N+F  +   T+   F+   +  +G T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y R+    YRGA   +L + +    +YENV +       H    + ++LVG K DLR  +
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 187
                        T +     ++   S +IE S+    NV+  F   +  + +   +++
Sbjct: 126 AV----------PTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 12/170 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQE 67
            K + +GD  VGK+C+L  +T  KF  D   T+   F   ++   G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YRGA   ++ + +  R++Y ++           +P   ++L+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           +            T  + ++  ++ G   ++E S+KT +NV+  F  A K
Sbjct: 125 RDV----------TYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 2e-33
 Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV-----------AEGTTVN 57
           IK + +GD  VGKT  L  YT NKF   +I TV  +F    V            +   V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 58  LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVV 116
           L LWDTAGQE +  L    +R A  F+L F L S+ S+ NV         + Y     +V
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 117 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 176
           L+G K DL + +               Q  EL  + G   Y E S+ T QNV+   +  +
Sbjct: 126 LIGNKADLPDQREV----------NERQARELADKYGIP-YFETSAATGQNVEKAVETLL 174

Query: 177 KVVIK 181
            +++K
Sbjct: 175 DLIMK 179

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (289), Expect = 2e-33
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K + +G+ +VGKT  L  Y  + F   ++ TV  +F    +      + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y  +    YRGA  F+L + + +  S+  V         +      V+LVG K D+ +++
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
              ++             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 12/177 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K + +GD  VGK+C+L+ +T  +F   +  T+   F A +V  +G  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  +    YRGA   +L + +  R ++ ++        QH S  + ++L+G K DL   +
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
               +           GE   ++ G   ++E S+KT  NV+  F    K + +  Q+
Sbjct: 125 DVKREE----------GEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 52/174 (29%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 67
           K + VGD  VGKTC+L+ +    F    +I TV  +F +  +  +G  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  +    YR A   +L + + ++AS++N+        ++    V ++L+G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +           V    GE+L K+ G   ++E S+KT  NV   F A  K + +
Sbjct: 128 R----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 3e-32
 Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 12/170 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V +G G VGK+ + + + +  F   Y PT+ D +   +  + +   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127
           +  +R L  +    F+L +SLV++ S++++       ++      VPV+LVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           +            ++++G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 124 REV----------SSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 12/179 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K + +G+   GK+C+L  +   KF  D   T+   F S  +   G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  +    YRGA   +L + + SR +Y  +           S  + ++L G K DL  D+
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 187
                                ++     ++E S+ T +NV+  F    + ++   +  +
Sbjct: 127 EVTFLEA----------SRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 12/169 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQED 68
           K V +G+ +VGKT ++  +  + F   Y  T+  D  S  +  E  T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  L P   R +   V+ + + +  S++   K            V ++LVG K DL + +
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
               +            E   K++    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-31
 Identities = 40/176 (22%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQE 67
           +K + +G+  VGK+ +L+ +T + F  +   T+  D     +  +G    L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  L P  YRGA   +L + +  R ++  +         + +    V ++      +E+
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           +           V   +G +  ++     +IE S+KT   V+  F+  ++ +I+ P
Sbjct: 128 R----------EVDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 3e-29
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTA 64
           S   K + +GDG VGK+ ++  Y +NKF T    T+   F    +  +G  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGT 120
           GQE +  LR   YRG+D  +L FS+    S++N+       + +         P V++G 
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 121 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 180
           K+D+ E +            +T + +   +  G   Y E S+K   NV A F+ A++ V+
Sbjct: 124 KIDISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

Query: 181 K 181
            
Sbjct: 173 A 173

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-28
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 11/176 (6%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V  +     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLR 125
           E +  +R L  +    F L +S+ +++++ ++       L+   +  VP++LVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +++               QG+ L +Q     ++E S+K++ NV  +F   ++ + +
Sbjct: 122 DERVV----------GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 14/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + VG G VGK+ + + +  ++F  DY PT  D++   VV +G  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLRED 127
             +R   +R  + F+  FS ++          +  ++        VP +LVG K DL + 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           +            +  + +    Q   + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 125 RQV----------SVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIRA 167

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 12/173 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 68
           K V +G+G VGKT +++ Y  NKF   +I T+  +F    +   G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           ++ L P+ YR ++  +L + +    S++ V        +     + + +VG K+DL +++
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           H           +  + E   + +GA +Y   S+K  + ++ +F    K +I+
Sbjct: 125 HV----------SIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMIE 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++     +G    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 124
           QE++  +R    R    F+L F++  R S+  V K +   L+       PVVLVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184
              +              ++          + Y E S+K + NV   F+  ++ V K   
Sbjct: 124 ESQRQV----------PRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRK--- 169

Query: 185 KQKE 188
            Q++
Sbjct: 170 YQEQ 173

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV +G T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED 127
           + +R    R  + F+  F++ +  S+E++  ++  +++       VP+VLVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                         + Q ++L +  G   YIE S+KT+Q V+  F   ++ + +
Sbjct: 124 TV-----------ESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQED 68
           K V +G+ AVGK+ +++ +   +F      T+   F    V  + TTV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           Y+ L P+ YRGA   ++ + + +  S+           +  SP + + L G K DL   +
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                          + +          ++E S+KT  NV  +F A  K + K
Sbjct: 128 AV----------DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (243), Expect = 2e-26
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 15/182 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV--AEGTTVNLGLWDTAGQ 66
           +K + +GD  VGKT ++  Y ++K+   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKL 122
           E +  L    YRGAD  VL + + + +S+EN+       L H +       P V++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 182
           D  E K  +++            +EL K +G       S+K   NV   F+   +  ++ 
Sbjct: 123 DAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

Query: 183 PQ 184
            Q
Sbjct: 174 NQ 175

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 3e-26
 Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 4   SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDT 63
           S     + V VG G VGK+ + I +  + F TDY PT+ D+++   V +     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKL 122
           AGQE++  +R    R  + F+L FS+  R S+E + K     L+       P++L+G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           DL   +            T  +G++L +Q+  + Y+E S+K + NV   F   ++V+ K
Sbjct: 121 DLDHQRQV----------TQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 96.7 bits (239), Expect = 6e-26
 Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVVAEGTTVNLGLWDTAGQE 67
           +K + +GD  VGKT ++  Y + KF   Y  T+     +  V+ +   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLD 123
            +  L    YRGAD  VL F + +  +++ +       L   SP      P V++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 183
           L   +             T + +          Y E S+K   NV+  F    +  +K  
Sbjct: 123 LENRQV-----------ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 184 QKQKEKKK 191
            + +   +
Sbjct: 172 TEVELYNE 179

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 2e-25
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 12/174 (6%)

Query: 5   ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDT 63
           A R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V  +       +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 64  AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 123
           AG E +  L P+ YRG+   ++ + +    ++  +        QH  P + V + G K D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
           L + +  +              ++    I A  ++E S+K   N+  +F    +
Sbjct: 121 LTDVREVMER----------DAKDYADSIHAI-FVETSAKNAININELFIEISR 163

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.2 bits (230), Expect = 1e-24
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEG-TTVNLGLWDTAGQE 67
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
            +  L P+ YR A   ++ + +    S+           +  S  + + LVG K+D+ ++
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
                       V   +GE+L ++ G  ++ E S+KT +NV  VF    +
Sbjct: 124 GGE-------RKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVFLGIGE 165

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 1e-24
 Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            +    G G VGK+ +++ +    F   YIPTV D +   +  + +   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYEN--VLKKWIPELQHYSPGVPVVLVGTKLDLRE 126
           +  ++ LS      F+L +S+ SR S E    + + I E++     +P++LVG K D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 127 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +             +++ E L +    + ++E S+K   NVK +F   + +  +
Sbjct: 123 SREV----------QSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (221), Expect = 2e-23
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K V VGDG VGK+ + I +    F  DY PT+ D++  +   +     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK 128
           + +R    R  D F++ +S+  +AS+E+V +     L+       P++LV  K+DL   +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 181
                      VT  QG+E+  +     YIE S+K    NV   F   ++V+ +
Sbjct: 126 K----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 7e-22
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +K    G   VGK+ +++ + + +F  +Y PT+   +      +   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127
             + R    R  + FVL + +  R S+E VL       +      V ++LVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 181
           +            +T +GE+L  ++  ++Y ECS+ T + N+  +F    + V +
Sbjct: 122 RQV----------STEEGEKLATELACAFY-ECSACTGEGNITEIFYELCREVRR 165

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 15/176 (8%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQED 68
           K V VGDG  GKT  +  + + +F   Y+ T+               +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
           +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+++ K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 184
                          + + L+       Y + S+K+  N +  F    + +I  P 
Sbjct: 124 VKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 8e-21
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 11/165 (6%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++ + VG  A GKT +L      +  T      F+  +         ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 128
              L    ++     +       R       ++ +  L        V+LV        + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
              A+      +T   G    +     Y     + +   +    D
Sbjct: 117 MNAAE------ITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLD 154

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.7 bits (200), Expect = 2e-20
 Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 13/174 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQE 67
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     +      V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 68  DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 127
           +++ +    YRGA   VL FS   R S+E +   W  ++      +P  LV         
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALV--------- 112

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                D      +   + E L K++   +Y   S K   NV  VF    +  ++
Sbjct: 113 -QNKIDLLDDSCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVFKYLAEKHLQ 164

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.6 bits (200), Expect = 3e-20
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 17/172 (9%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVVAEGTTVNLGLWDTAG 65
           R  K + +GD  VGKTC+   + + +FP     T+  +     V  +G  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 66  QEDYNRL-RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 123
           QE + +      YR     V  + + + AS+ ++        QH  +  +P +LVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 124 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ---NVKAVF 172
           LR                T   ++         + E S+K      +V+A+F
Sbjct: 121 LRSAIQV----------PTDLAQKFADTHSMPLF-ETSAKNPNDNDHVEAIF 161

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 5e-20
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++   +GD   GK+ ++  + +  +      T  + +   ++ +G T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSP-GVPVVLVGTKLDLR 125
                      AD  +  FSL    S++ V  L   +  L+     G+ + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 185
                         V  A+   L   +    Y E  +    NV  VF    + V+   ++
Sbjct: 120 ASSPR--------VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

Query: 186 QK 187
           Q+
Sbjct: 172 QQ 173

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 5e-20
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
           S+  K   +G  +VGK+ + I +   +F   Y PT+ + F+  +   G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDL 124
           Q++Y+          + ++L +S+ S  S+E +       L       +P++LVG K DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
             ++            +  +G+ L +   A+ ++E S+K  Q    VF   I    K
Sbjct: 122 HMERVI----------SYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEK 167

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 2e-17
 Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 11/168 (6%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
           ++ ++ + +G  A GKT +L      +  T      F+  +         V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 65

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 125
           Q+    L    Y G    +       R   +   ++    +        ++L+       
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA----- 120

Query: 126 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
            +K  L D      +    G    +     Y     + +   +     
Sbjct: 121 -NKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLT 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 3e-17
 Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 16/174 (9%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K + VG    GKT +L  ++ N+          +     +          +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQES 71

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLRED 127
                   Y   +  ++      R       ++    L H       +++   K D++E 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA---AIKV 178
                    +  ++        K     +   C + T + +    +     +K+
Sbjct: 132 MT-------VAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRLKI 177

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.1 bits (178), Expect = 8e-17
 Identities = 27/199 (13%), Positives = 52/199 (26%), Gaps = 34/199 (17%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +K + +G G  GK+ ++            I      F               +D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKM--------FDVGGQRS 54

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENV----------LKKWIPELQHYS-PGVPVVL 117
             +     + G    +   +L                   +K +     +       ++L
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 118 VGT-------KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS--------YYIECSS 162
                     K+          ++ G      A      +    +        Y     +
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 163 KTQQNVKAVFDAAIKVVIK 181
              +NV+ VFDA   V+IK
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 8e-17
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 13/178 (7%)

Query: 1   MASSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGL 60
           + S+  + ++ + +G    GKT +L    S           F+  S           L +
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNV 64

Query: 61  WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVG 119
           WD  GQ          +   D+ +       R  +E   ++    L+      VPV++  
Sbjct: 65  WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 120 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
            K DL               +         +         CS+ T + V+   +   K
Sbjct: 125 NKQDLLTAAP-------ASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWVCK 174

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 19/164 (11%), Positives = 41/164 (25%), Gaps = 4/164 (2%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + +G    GKT +L    +++  T   PT               +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 129
            RL    +   +  V          ++    +               ++        +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 130 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 173
             A+    + +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.9 bits (175), Expect = 3e-16
 Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 31/199 (15%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           +K + +G G  GK+  +            +PT           +  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENV----------LKKWIPELQHYS-PGVPVVL 117
             R     +      +   +L                      +   + +       V+L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 118 VGTKLDLREDK-------HYLADHPGLVPVTTAQGEELRKQIGAS--------YYIECSS 162
              K DL E+K        Y  ++ G      A  E + K             Y     +
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 163 KTQQNVKAVFDAAIKVVIK 181
              +N++ VF A    +++
Sbjct: 178 TDTENIRFVFAAVKDTILQ 196

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 3e-16
 Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 13/174 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++ + +G    GKT +L      +  T   PT+  N           + L +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV---ETLSYKNLKLNVWDLGGQTS 73

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 127
                   Y      +       +       K+    LQ        +++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD---- 129

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                       V+        K    S  +  S+   + +    D  I V+ +
Sbjct: 130 ---QPGALSASEVSKELNLVELKDRSWS-IVASSAIKGEGITEGLDWLIDVIKE 179

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (171), Expect = 5e-16
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 15/179 (8%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVVAEGTTVNLGLWDTA 64
            + + V +G+  VGK+ +   +        +D      D +   ++ +G +  + L D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 65  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE--LQHYSPGVPVVLVGTKL 122
             +  N              L    ++  +      +   +      +  +P++LVG K 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 121

Query: 123 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
           DL   +            + ++G           +IE S+  Q NVK +F+  ++ V  
Sbjct: 122 DLVRCREV----------SVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVRL 169

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 9/170 (5%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
            K V +G    GKT +L     ++           +    +      +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 69

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLRED 127
             R+        +  V               ++            VP++++G K+D  E 
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 128 KHY--LADHPGLVPVTTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFD 173
                L +  GL   TT +G    K++ A       CS   +Q     F 
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 8e-15
 Identities = 35/170 (20%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++   VG    GKT  +    S +F  D IPTV  N           V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK---GNVTIKLWDIGGQPR 59

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLRED 127
           +  +     RG    V       +   E    +    L      G+PV+++G K DL   
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 177
                       +         +          S K + N+       I+
Sbjct: 120 LDE-------KELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQ 161

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 4e-14
 Identities = 33/182 (18%), Positives = 73/182 (40%), Gaps = 17/182 (9%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           K + +G   VGK+ +   +   +            +  ++V +G   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 128
             L        D +V+ +S+  + S+E   +  +   +      VP++LVG K DL   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 129 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE 188
                       +  +G           +IE S+    NV+A+F+  ++ +    + +++
Sbjct: 122 EV----------SVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQI----RLRRD 166

Query: 189 KK 190
            K
Sbjct: 167 SK 168

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 64.7 bits (156), Expect = 6e-14
 Identities = 25/174 (14%), Positives = 50/174 (28%), Gaps = 13/174 (7%)

Query: 9   IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 68
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 69  YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLRED 127
                   +   D  +       R   ++  ++    L      G  +++   K DL   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
                             E    +        CS+ T +++    D  +  +  
Sbjct: 119 LS--------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 26/202 (12%), Positives = 55/202 (27%), Gaps = 33/202 (16%)

Query: 7   RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ 66
           R +K + +G G  GK+  L      +      PT   +       E   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 67  EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----------PGVPV 115
               +     +      +   S           ++     +  +             V +
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 116 VLVGT-------KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---------YYIE 159
           +L          K+ +   K Y  +  G         + L +              Y+  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 160 CSSKTQQNVKAVFDAAIKVVIK 181
            ++   +N++ VF      ++ 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 5e-13
 Identities = 21/177 (11%), Positives = 47/177 (26%), Gaps = 13/177 (7%)

Query: 6   SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 65
           +R ++ + +G    GKT +L      +  T    T+              +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 66  QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 124
                      Y   D  +       R        + +  L+        +V+   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 125 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 181
            +                + G    K        + S+     +    +  ++ +  
Sbjct: 119 EQAMTSSEMA-------NSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETLKS 167

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 5e-08
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 6/122 (4%)

Query: 12  VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR 71
           + VG    GKT + +   + ++  D   ++ D+ +   V      +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 72  LRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV----PVVLVGTKLDLRE 126
                +   A   V      +       + +++ ++   S  +     +++   K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 127 DK 128
            K
Sbjct: 123 AK 124

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 26/215 (12%), Positives = 55/215 (25%), Gaps = 50/215 (23%)

Query: 10  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 69
           + + +G G  GK+ ++            + T           +   VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 70  NRLRPLSYRGADVFVLAFSLVSRASYENVLKK----------WIPELQHYSP-GVPVVLV 118
            R     +      +   +  S         +          +     +     + V+L 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 119 GTKLDLREDK---------HYLADHPGLVPVTTAQG-------------------EELRK 150
             K DL  +K          Y  +         A                       +  
Sbjct: 121 LNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRIST 180

Query: 151 QIGAS----YYIECSSKTQQNVKAVFDAAIKVVIK 181
             G      Y     +   +N++ VF+    ++ +
Sbjct: 181 ASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.98
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.85
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.83
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.83
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.82
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.81
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.69
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.69
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.67
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.64
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.56
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.56
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.54
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.53
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.52
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.46
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.46
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.4
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.35
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.13
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.92
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.87
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.75
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.64
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.61
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.38
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.25
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.06
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.98
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.78
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.71
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.7
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.69
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.68
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.64
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.57
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.55
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.53
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.49
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.45
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.44
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.42
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.38
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.35
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.31
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.3
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.29
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.2
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.14
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.14
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.13
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.12
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.11
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.1
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.08
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.07
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.06
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.06
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.06
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.99
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.98
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.97
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.97
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.92
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.91
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.9
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.86
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.84
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.83
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.81
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.78
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.77
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.76
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.76
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.74
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.74
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.72
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.7
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.7
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.68
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.68
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.63
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.62
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.59
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.57
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.56
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.55
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.55
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.45
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.39
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.37
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.34
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.34
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.33
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.33
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.33
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.31
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.25
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.16
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.12
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.08
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.03
d1okkd2	207	GTPase domain of the signal recognition particle r	95.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.93
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.92
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.9
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.86
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.83
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.79
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.77
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.74
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.73
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.69
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.68
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.61
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.51
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.48
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.48
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.39
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.35
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.32
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.24
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.23
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.21
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.19
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.15
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.14
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.95
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.83
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.8
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.77
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.75
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.73
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.68
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.67
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.66
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.65
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.56
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.51
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.34
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.29
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.97
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.92
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.9
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.81
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.74
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.56
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.2
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.16
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.98
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.75
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.5
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.24
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.08
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.95
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.55
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.5
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.39
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.43
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.96
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.71
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.96
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.02
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.84
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.51
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.57
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.52
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.3
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.97
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.54
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.78
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	84.77
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.63
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	83.29
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	83.11
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.95
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.9
d1okkd2	207	GTPase domain of the signal recognition particle r	82.88
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.09
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	81.97
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.67
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.61
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.52
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	80.63
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.18

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=239.44  Aligned_cols=187  Identities=53%  Similarity=0.969  Sum_probs=161.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|..+.|...+.||.+..+.....+++..+.+.+||++|+++|..++..+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            57999999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||+++++||+++...|...+....++.|+++|+||+|+.........  ......+..+++++++..++..+|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999999866678888877789999999999999765332111  1233348899999999998877899999999


Q ss_pred             CCCHHHHHHHHHHHHhCCccchhhhhhcCCCeEE
Q 028362          165 QQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL  198 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~c~~  198 (210)
                      |.||+++|+.++..+.++.+     .+++++|.+
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~-----~k~~~~C~i  190 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPE-----PKKSRRCVL  190 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCS-----TTCCCSCCC
T ss_pred             CcCHHHHHHHHHHHHhcCcC-----CCCCCCCeE
Confidence            99999999999999887643     234555654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-39  Score=233.98  Aligned_cols=182  Identities=51%  Similarity=0.963  Sum_probs=158.3

Q ss_pred             CCC-CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccC
Q 028362            1 MAS-SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG   79 (210)
Q Consensus         1 m~~-~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   79 (210)
                      |++ ..+..+||+|+|++|||||||+++|..+.|.+.+.||....+......++..+.+.+||++|++.+..++..++++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~   80 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPM   80 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccc
Confidence            664 4457799999999999999999999999999999999987777777888999999999999999999999999999


Q ss_pred             ccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEE
Q 028362           80 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      +|++++|||++++++|+++...|...+....+++|+++|+||+|+.+.......  ......++.+++.+++++++..+|
T Consensus        81 a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~  160 (185)
T d2atxa1          81 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  160 (185)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE
Confidence            999999999999999998867888888887789999999999999764322111  122334789999999999997799


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++|||++|.||+++|+.++++++.+
T Consensus       161 ~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         161 VECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             EEecCCCCcCHHHHHHHHHHHHcCC
Confidence            9999999999999999999988653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-38  Score=226.90  Aligned_cols=173  Identities=47%  Similarity=0.892  Sum_probs=153.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+|+|++|||||||+++|..+.+.+.+.||.+..+.....+++..+.+.+||++|++.|..++..++++++++|+|||
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   82 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFS   82 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcc
Confidence            69999999999999999999999999999999988777778889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++++||+++...|...+....+++|++||+||+|+.........  ......+..++++.++++++..+|++|||++|.
T Consensus        83 ~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~  162 (177)
T d1kmqa_          83 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD  162 (177)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCT
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            999999999867788888888889999999999999765321111  112234788999999999998799999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      ||+++|+.+++++++
T Consensus       163 gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         163 GVREVFEMATRAALQ  177 (177)
T ss_dssp             THHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-38  Score=224.55  Aligned_cols=163  Identities=28%  Similarity=0.430  Sum_probs=149.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ++.+||+|+|++|||||||+++|..+.+.+.+.||....+...+.+++..+.+.+||++|++.+..++..++.++|++|+
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            56799999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||+++++++..+ ..|...+... . +++|++||+||+|+...+.          +..++++.++++++. +|++|||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sak  149 (167)
T d1xtqa1          82 VYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCTT
T ss_pred             hcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            9999999999998 7887766544 3 6899999999999977655          789999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028362          164 TQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~  180 (210)
                      +|.||+++|+.+++.+.
T Consensus       150 ~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         150 ENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhc
Confidence            99999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=226.26  Aligned_cols=179  Identities=61%  Similarity=1.051  Sum_probs=157.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +++.+||+|+|++|||||||+++|..+.|...+.||....+...+..++..+.+.+||++|++.+..++..+++++++++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999999999998887778889999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC--CCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++++|+++...|...+..+..++|++||+||+|+...+.....  ..........++..+++.++..+|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999866688888877789999999999998765332111  12233467889999999999779999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++|.||+++|.++++.++.++
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999988763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.3e-37  Score=224.03  Aligned_cols=163  Identities=31%  Similarity=0.547  Sum_probs=146.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+|+|++|||||||+++|..+.|...+.||.+..+...+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            56899999999999999999999999999999999988888888999999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||+++++++..+ ..|++.+...  .+++|+++|+||+|+...+.          +..+++.++++.++. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  150 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            999999999998 7888777654  36899999999999977654          888999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|+++++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-37  Score=222.20  Aligned_cols=162  Identities=34%  Similarity=0.557  Sum_probs=148.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|++|||||||+++|..+.+...+.||.+.++ ......++..+.+.+||++|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999899887554 55677899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ||++++++++++ ..|++.+....+++|+++||||+|+...+.          +..++++.++++++. +++++||++|.
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999997 789998887778999999999999987655          788899999999997 89999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 028362          167 NVKAVFDAAIKVVIK  181 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~  181 (210)
                      ||+++|+++++.+++
T Consensus       150 ~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         150 NVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             SSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=224.72  Aligned_cols=166  Identities=31%  Similarity=0.519  Sum_probs=149.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +.+.+||+|+|++|||||||+++|..+.+.+.+.|+....+...+.+++..+.+.+||++|++++...+..++++++++|
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            45789999999999999999999999999999899887777778889999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++..+ ..|...+...  ..+.|++|||||+|+.....          +..+++..++..++. +|++|||
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  150 (173)
T d2fn4a1          83 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  150 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             eecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEeC
Confidence            99999999999998 7787766543  36899999999999977654          778899999999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCC
Q 028362          163 KTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ++|.||+++|+++++.+.+.
T Consensus       151 k~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999988543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=224.34  Aligned_cols=162  Identities=21%  Similarity=0.356  Sum_probs=131.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|.+..+.. +.++....+...+.+++..+.+.+||++|++.++.++..+++++|++|+||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            3799999999999999999999877643 456667777777888999999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |++++.+++++ ..|...+....  .++|+++||||+|+.....          +...+++.+++.++. ++++|||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999998 78888776554  5789999999999987655          788999999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 028362          166 QNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~~  182 (210)
                      .||+++|.++++.+..+
T Consensus       148 ~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999887643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=219.10  Aligned_cols=163  Identities=32%  Similarity=0.599  Sum_probs=139.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+|+|++|||||||+++|..+.|.+.+.|+....+.. ....++..+.+.+||++|++++..++..++++++++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            35899999999999999999999999999999988766644 56678889999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++||.++ ..|+..+.... ...|+++||||+|+...+.          +..++++.++++++. ++++|||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999998 67776655443 6889999999999987765          889999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|.++++.+++
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-37  Score=221.23  Aligned_cols=165  Identities=27%  Similarity=0.512  Sum_probs=148.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|..+.|.+.+.|+.+..+...+.+++..+.+.+||++|++.+..++..++++++++|+
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            36799999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhc-c-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQH-Y-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~-~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++++++++ ..|...+.. . .+++|++|||||+|+.....          +..+++..++.+.+..++++|||+
T Consensus        81 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak  149 (167)
T d1c1ya_          81 VYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAK  149 (167)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTT
T ss_pred             eeeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCC
Confidence            9999999999998 677766554 3 36899999999999987765          788899999988766699999999


Q ss_pred             CCCCHHHHHHHHHHHHhC
Q 028362          164 TQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~  181 (210)
                      +|.|++++|.++++++.+
T Consensus       150 ~g~gv~e~F~~l~~~i~k  167 (167)
T d1c1ya_         150 SKINVNEIFYDLVRQINR  167 (167)
T ss_dssp             TTBSHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHhcC
Confidence            999999999999998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-37  Score=220.92  Aligned_cols=164  Identities=32%  Similarity=0.517  Sum_probs=149.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+++||+++|++|||||||+++|.++.+.+.+.|+.+..+.....+++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            35799999999999999999999999999999999988887778889999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||+++++++.++ ..|...+.+..  .++|+++|+||+|+...+.          ++.+++.++++++++ +++++||+
T Consensus        82 v~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak  149 (169)
T d1x1ra1          82 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred             ecccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCC
Confidence            9999999999997 78887766542  5899999999999987655          888999999999997 89999999


Q ss_pred             CCC-CHHHHHHHHHHHHhC
Q 028362          164 TQQ-NVKAVFDAAIKVVIK  181 (210)
Q Consensus       164 ~~~-~i~~~~~~i~~~~~~  181 (210)
                      ++. ||+++|..+++.+.+
T Consensus       150 ~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         150 DPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SSCBSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh
Confidence            876 999999999998764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=222.24  Aligned_cols=163  Identities=26%  Similarity=0.483  Sum_probs=145.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|..+.+.+.+.||.+..+.....+++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~   81 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   81 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEe
Confidence            58999999999999999999999999999999999888878889999999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhc---cCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           88 SLVSRASYENVLKKWIPELQH---YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |+++++++.++ ..|...+..   ...++|++|||||+|+...+.          +..++++++++.++. ++++|||++
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak~  149 (171)
T d2erxa1          82 SITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAKL  149 (171)
T ss_dssp             ETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             ecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            99999999998 677655543   236899999999999977655          788999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      |.||+++|+.+++.+.++
T Consensus       150 ~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         150 NHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             TBSHHHHHHHHHHTCCSS
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999866543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-36  Score=221.03  Aligned_cols=174  Identities=39%  Similarity=0.729  Sum_probs=153.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      .||+++|++|||||||+++|..+.|.+.+.||....+.....+++..+.+.+||++|++.+...+..++++++++|+|||
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d   82 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFD   82 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeee
Confidence            68999999999999999999999999999999988888788889999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCccccccccccc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      +++++||+.+...|...+....+++|+++||||+|+........  .......++.+++..++++.+..+|++|||+++.
T Consensus        83 ~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~  162 (179)
T d1m7ba_          83 ISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE  162 (179)
T ss_dssp             TTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH
T ss_pred             cccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            99999999986678888888778999999999999876432111  1223445889999999999998899999999998


Q ss_pred             C-HHHHHHHHHHHHhCC
Q 028362          167 N-VKAVFDAAIKVVIKP  182 (210)
Q Consensus       167 ~-i~~~~~~i~~~~~~~  182 (210)
                      | ++++|+.++..++++
T Consensus       163 n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         163 NSVRDIFHVATLACVNK  179 (179)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHHHhcC
Confidence            5 999999999988753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.7e-36  Score=217.31  Aligned_cols=164  Identities=30%  Similarity=0.630  Sum_probs=145.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||+++|..+.+.+.+.|+.+.++ .......+..+.+.+||+||++++..++..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888888887555 4456778899999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++... ..|...+.... +..|+++|+||+|+.....          +..+++..++++++. ++++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAKD  151 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCCC
Confidence            9999999999988 56666665544 6899999999999987655          788999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      |.||+++|+++++.+.++
T Consensus       152 g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         152 NINVKQTFERLVDVICEK  169 (169)
T ss_dssp             TBSHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhhC
Confidence            999999999999988753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=219.38  Aligned_cols=163  Identities=28%  Similarity=0.548  Sum_probs=148.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|..+.+.+.+.|+.+..+.....+++..+.+.+||++|++.+...+..++++++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            36799999999999999999999999999999999988888788899999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      |||++++.++.++ ..|...+....  +++|++|||||+|+...+.          +..+++..+++.++. ++++|||+
T Consensus        81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak  148 (167)
T d1kaoa_          81 VYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAK  148 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTT
T ss_pred             eeeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCC
Confidence            9999999999998 67776665433  6899999999999987655          788899999999997 79999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028362          164 TQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~  180 (210)
                      +|.||+++|.++++++.
T Consensus       149 ~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         149 SKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHc
Confidence            99999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.8e-36  Score=215.14  Aligned_cols=163  Identities=25%  Similarity=0.519  Sum_probs=146.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .+.+||+|+|++|||||||+++|..+.+.+.+.||....+. .....++....+.+||++|++++..++..+++.++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999999998998877664 45667888899999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||+++++++..+ ..|...+.... ++.|+++|+||+|+...+.          +..+++++++..++. +|++|||+
T Consensus        82 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk  149 (167)
T d1z0ja1          82 IVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAK  149 (167)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecC
Confidence            99999999999998 67766665544 7899999999999987655          888999999999997 89999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 028362          164 TQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~  180 (210)
                      +|.||+++|.++++++.
T Consensus       150 ~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         150 NAININELFIEISRRIP  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHhCC
Confidence            99999999999998873

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=218.89  Aligned_cols=161  Identities=29%  Similarity=0.487  Sum_probs=142.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      .+||+++|++|||||||+++|..+.|.+.+.||.+..+......++..+.+.+||++|++.+. ....++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999999999999999998888888889999999999999998875 4456788999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhcc--CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      |+++++++..+ ..|.......  .++.|+++||||+|+...+.          ++.+++++++++++. +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999998 5665544432  36899999999999987654          889999999999997 8999999999


Q ss_pred             C-CHHHHHHHHHHHHhC
Q 028362          166 Q-NVKAVFDAAIKVVIK  181 (210)
Q Consensus       166 ~-~i~~~~~~i~~~~~~  181 (210)
                      . ||+++|.++++.+.+
T Consensus       149 ~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         149 EGNITEIFYELCREVRR  165 (168)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            8 599999999988753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=216.67  Aligned_cols=163  Identities=33%  Similarity=0.600  Sum_probs=144.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+|+|++|||||||+++|..+.+.+.+.++....+ ...+.+++..+.+.+||++|++.|..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            468999999999999999999999999888888876665 4467789999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||++++.++..+ ..|...+.... ...|+++|+||+|+.....          +..++++.+++.++. ++++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAkt  151 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKE  151 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccCC
Confidence            9999999999998 56666655444 6799999999999987655          788999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|.++++++..
T Consensus       152 g~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=219.02  Aligned_cols=163  Identities=33%  Similarity=0.597  Sum_probs=143.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ..+||+|+|++|||||||+++|..+.+.+.+.||.+..+...+.+++..+.+.+||++|++++...+..+++.++++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            34899999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhcc-C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.++..+ ..|...+... . ...|+++|+||+|+.....          +..+++..++++++. ++++|||++
T Consensus        84 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (171)
T d2erya1          84 FSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAKI  151 (171)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             eccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCCC
Confidence            999999999998 6777655433 3 6799999999999977655          788999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|.++++.+.+
T Consensus       152 ~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         152 RMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-36  Score=214.16  Aligned_cols=161  Identities=30%  Similarity=0.602  Sum_probs=144.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+|+|++|||||||+++|.++.+...+.++....+ .....+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            58999999999999999999999999888888776655 44567899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||+++++++..+ ..|...+.... ...|+++++||+|+.....          +..+++..+++.++. ++++|||++|
T Consensus        84 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Saktg  151 (166)
T d1z0fa1          84 YDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTG  151 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCCC
Confidence            999999999987 67777776554 6899999999999977665          778899999999987 8999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028362          166 QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~  180 (210)
                      .||+++|.++++++.
T Consensus       152 ~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         152 ENVEDAFLEAAKKIY  166 (166)
T ss_dssp             TTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhC
Confidence            999999999998863

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-36  Score=214.43  Aligned_cols=162  Identities=34%  Similarity=0.568  Sum_probs=148.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|.++.+...+.|+.+..+.......+..+.+.+||++|++.+...++.+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            56999999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      ||++++.+++.+ ..|...+....  +++|+++|+||+|+....           +..+++.++++.++. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~  148 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCC
Confidence            999999999997 78988877653  579999999999996543           678899999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|.++++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=212.66  Aligned_cols=160  Identities=31%  Similarity=0.541  Sum_probs=142.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   87 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   87 (210)
                      +||+++|++|||||||+++|..+.+...+.|+.+.... .....++..+.+.+||++|++++...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999888888765553 45666788999999999999999999999999999999999


Q ss_pred             ECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           88 SLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        88 d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      |++++.++.++ ..|+..+... .++.|+++|+||+|+.....          +..+++..+++.++. ++++|||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999998 6666655544 47899999999999987655          788899999999997 89999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 028362          167 NVKAVFDAAIKVVI  180 (210)
Q Consensus       167 ~i~~~~~~i~~~~~  180 (210)
                      ||+++|++|++++.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999998764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-35  Score=214.51  Aligned_cols=166  Identities=28%  Similarity=0.560  Sum_probs=147.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+|+|++|||||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.+||++|+++|..+|..++++++++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45699999999999999999999999999998998877664 46778999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhc-cCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||+++++++..+ ..|...+.. ...+.|+++|+||+|+.....          +..++...++...+. +++++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999998 556555554 447899999999999987665          788899999998886 78999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCc
Q 028362          164 TQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~~  183 (210)
                      +|.||+++|+++++.+.+..
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESM  171 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC
T ss_pred             cCccHHHHHHHHHHHHHHHh
Confidence            99999999999999887643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-35  Score=210.64  Aligned_cols=163  Identities=32%  Similarity=0.554  Sum_probs=144.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      -.+||+++|++|||||||+++|..+.+.+.+.|+.+..+. ......+..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            3589999999999999999999999999888888877764 456678889999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHh-ccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|...+. ...++.|++||+||+|+.....          ++.++++.++...+. +|+++||++
T Consensus        85 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~  152 (170)
T d1r2qa_          85 VYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCC
Confidence            9999999999998 55655554 4447899999999999987765          889999999999886 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|.++++.+.+
T Consensus       153 g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         153 SMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             CTTHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=213.52  Aligned_cols=164  Identities=27%  Similarity=0.522  Sum_probs=145.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|.+|||||||+++|..+.+.+.+.|+...... ..+..++..+.+.+||++|++++..++..+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            3589999999999999999999999999888888877654 346678899999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++.++ ..|...+.... +++|+++|+||+|+.....          +..+.+..+++.++. +++++||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  151 (174)
T d2bmea1          84 VYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSALT  151 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCCC
Confidence            9999999999998 66666665544 7899999999999977665          778888999999886 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      |.||+++|.++++.+.++
T Consensus       152 ~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         152 GENVEEAFVQCARKILNK  169 (174)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999998744

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-37  Score=220.58  Aligned_cols=163  Identities=28%  Similarity=0.482  Sum_probs=137.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|++|||||||+++|..+.+...+.||.+.++ ......++..+.+.+||++|++.+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999999998889887665 44566788899999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  166 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  166 (210)
                      ||++++++++++ ..|+..+....+++|+++||||+|+.....            .+++..++...+. +++++||++|.
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~------------~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC------------TTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh------------hhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999998 778887777667999999999999976532            2345567777776 89999999999


Q ss_pred             CHHHHHHHHHHHHhCCcc
Q 028362          167 NVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       167 ~i~~~~~~i~~~~~~~~~  184 (210)
                      ||+++|.+|++.+...++
T Consensus       149 ~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             TTTHHHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHHHHccCCC
Confidence            999999999999976543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=211.47  Aligned_cols=164  Identities=29%  Similarity=0.570  Sum_probs=140.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+|+|++|||||||++++.++.+.+.+.++..... .......+..+.+.+||++|++.+..++..+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            358999999999999999999999998888777775554 3346678889999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|...+.... +++|++||+||+|+.....          +..+++..+++..+. +++++||++
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~t  149 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKT  149 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999998 56666665544 7899999999999987665          788899999999987 899999999


Q ss_pred             CCCHHHHHHHHHHHHhCC
Q 028362          165 QQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~~  182 (210)
                      |.||+++|.++++.+.++
T Consensus       150 g~~V~e~f~~i~~~i~~~  167 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYRK  167 (173)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-35  Score=212.92  Aligned_cols=165  Identities=28%  Similarity=0.595  Sum_probs=116.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+++|.+|||||||+++|..+.+...+.|+.+..+ ...+.+++..+.+.+||+||++.+..++..+++.++++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            3568999999999999999999999998888888877655 446778899999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc-CCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  163 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  163 (210)
                      +|||++++.++..+ ..|...+... ..+.|+++|+||.|+.....          ...+++..++...+. +++++||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999998 6666666544 47899999999999987654          677888999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHhCC
Q 028362          164 TQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       164 ~~~~i~~~~~~i~~~~~~~  182 (210)
                      +|.||+++|.++++.+..+
T Consensus       152 ~g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         152 ANINVENAFFTLARDIKAK  170 (173)
T ss_dssp             --CCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=209.84  Aligned_cols=163  Identities=31%  Similarity=0.572  Sum_probs=140.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      ..+||+++|++|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+||++|++.|...+..+++.++++|+
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            458999999999999999999999998888777765544 4456789999999999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      |||+++++++..+ ..|+..+.... +++|+++||||+|+.+...          ...+....+....+. +++++||++
T Consensus        83 v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (175)
T d2f9la1          83 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSALD  150 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecCC
Confidence            9999999999998 67777776655 6899999999999987654          566777888877775 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.|++++|+++++.+.+
T Consensus       151 g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         151 STNVEEAFKNILTEIYR  167 (175)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=205.38  Aligned_cols=164  Identities=32%  Similarity=0.518  Sum_probs=132.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDY-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..+||+++|+++||||||+++|..+.+...+ .++.+.++ ...+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            4689999999999999999999999876544 44444444 446778999999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT  164 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  164 (210)
                      +|||+++++++..+...|...........|+++|+||+|+.....          +..+++..+++.++. +++++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  153 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKT  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999984444444444457889999999999987765          888999999999997 899999999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q 028362          165 QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       165 ~~~i~~~~~~i~~~~~~  181 (210)
                      |.||+++|+++++.+.+
T Consensus       154 g~gi~e~f~~l~~~i~k  170 (170)
T d2g6ba1         154 GLNVDLAFTAIAKELKR  170 (170)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHcCC
Confidence            99999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-34  Score=206.10  Aligned_cols=164  Identities=32%  Similarity=0.578  Sum_probs=143.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      ++||+++|++|||||||+++|..+.+.+.+.|+.+..+ ...+..++..+.+.+||++|++++..++..++..++++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999999999999999999999988766 44677899999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhc-cCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||++++.++.++ ..|...+.. .....|+++|+||+|+.+..       ....+..+++.++++..+. +|+++||++|
T Consensus        83 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~-------~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g  153 (170)
T d1ek0a_          83 YDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKTG  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTTC
T ss_pred             EeCCcccchhhh-hhhhhhhccccccccceeeeeccccccccc-------chhhhhHHHHHHHHHHcCC-EEEEecCCCC
Confidence            999999999998 566655444 44689999999999996652       2334788999999999997 9999999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 028362          166 QNVKAVFDAAIKVVI  180 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~  180 (210)
                      .||+++|.++++++.
T Consensus       154 ~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         154 ENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TTHHHHHHHHHTTSC
T ss_pred             cCHHHHHHHHHHHhc
Confidence            999999999987653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-34  Score=205.70  Aligned_cols=165  Identities=28%  Similarity=0.614  Sum_probs=146.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ..++||+++|++|||||||+++|.++.+...+.++....+. ..+.+++..+.+.+||++|+++++.++..++..+++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46799999999999999999999999998888887766653 45678899999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++.++..+ ..|+..+....  ...|+++++||.|.....           +..+++..+++.++. +++++||
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa  151 (177)
T d1x3sa1          85 LVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASA  151 (177)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeC
Confidence            99999999999997 67887776654  578999999999986543           788999999999997 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHhCCc
Q 028362          163 KTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       163 ~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++|.|++++|+++++++.+.+
T Consensus       152 ~tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         152 KTCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             TTCTTHHHHHHHHHHHHHTSG
T ss_pred             CCCCCHHHHHHHHHHHHccCc
Confidence            999999999999999998775

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=214.82  Aligned_cols=164  Identities=38%  Similarity=0.619  Sum_probs=142.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEEC----------CEEEEEEEEeCCCcccccccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAE----------GTTVNLGLWDTAGQEDYNRLRPL   75 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   75 (210)
                      ..+||+|+|++|||||||+++|.++.+.+.+.++....+.. .+.++          +..+.+.+||++|+++|+.++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            46899999999999999999999999988887877666532 33322          34578999999999999999999


Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG  153 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (210)
                      ++++++++|+|||++++.+++.+ ..|...+....  +..|+++|+||+|+...+.          +..+++.+++++++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHcC
Confidence            99999999999999999999998 68887766553  5788999999999987765          88999999999998


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          154 ASYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       154 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      . +++++||++|.||+++|+++++.+.++
T Consensus       153 ~-~~~e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         153 I-PYFETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             C-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            7 899999999999999999999988643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=207.04  Aligned_cols=162  Identities=22%  Similarity=0.411  Sum_probs=134.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCce-eeeeeEEEEECCEEEEEEEEeCCC---cccccccCcccccCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTV-FDNFSANVVAEGTTVNLGLWDTAG---QEDYNRLRPLSYRGAD   81 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~~   81 (210)
                      ..+||+++|++|||||||+++|..+.+.. ...++. ...+...+.+++..+.+.+||++|   +++|  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            57999999999999999999999876543 233333 344566788899999999999774   5555  5567899999


Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      ++|+|||+++++++.++ ..|...+....  +++|+++|+||+|+...+.          +..++++.++..+++ +|++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999998 67777666543  6899999999999987655          788999999999997 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhCC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      +||++|.||+++|.++++.+..+
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHHc
Confidence            99999999999999999988543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-34  Score=205.92  Aligned_cols=165  Identities=32%  Similarity=0.563  Sum_probs=127.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEE--ECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVV--AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+||+++|++|||||||+++|..+.+.+.+.|+.+........  .+.....+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            5899999999999999999999999988888877655443322  34455778999999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhcc----C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHY----S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~----~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      |||++++.++..+ ..|++.+...    . .++|+++|+||+|+...+.         .+..+++++++..++..++++|
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e~  151 (175)
T d1ky3a_          82 VYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLT  151 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEEE
T ss_pred             Eeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEEE
Confidence            9999999999887 7887766432    1 4789999999999976432         2567889999999987789999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|.||+++|.++++.++++
T Consensus       152 SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         152 SAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999999999999988653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-34  Score=204.11  Aligned_cols=161  Identities=33%  Similarity=0.643  Sum_probs=136.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeee-EEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+++|++|||||||+++|..+.+...+.||.+.++. ..+.+++..+.+.+||+||++.|+.++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            589999999999999999999999999998999887764 4677789999999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  165 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (210)
                      ||++++.+++++ ..|...+.... ...|++++++|.|+....           ...+++..++..++. ++++|||+++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999997 55555544444 688999999999987665           678899999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHhC
Q 028362          166 QNVKAVFDAAIKVVIK  181 (210)
Q Consensus       166 ~~i~~~~~~i~~~~~~  181 (210)
                      .|++++|+++++.+.+
T Consensus       149 ~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-33  Score=202.47  Aligned_cols=164  Identities=35%  Similarity=0.643  Sum_probs=140.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      ...+||+|+|++|||||||+++|..+.+.+.+.+|.+..+ ......++..+.+.+||++|+..+...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4568999999999999999999999999988888886665 445667889999999999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhcc----C-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHY----S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~----~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      +++|++++.+++.+ ..|+..+...    . ++.|+++|+||+|+....           +..+++++++++++..+|++
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-----------v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhcc-----------CcHHHHHHHHHHcCCCeEEE
Confidence            99999999999987 6787666442    1 478999999999996533           78899999999887668999


Q ss_pred             eccCCCCCHHHHHHHHHHHHhC
Q 028362          160 CSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      |||+++.||+++|+++++.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-33  Score=203.17  Aligned_cols=165  Identities=30%  Similarity=0.552  Sum_probs=143.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      .+||+|+|.+|||||||+++|.++.+...+.||.+.++ .......+..+.+.+||++|+..+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999999999999886665 44566788889999999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      ||++++.++..+ ..|+..+....     .++|+++|+||+|+....           +..++...++...+..++++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999997 78887665432     368999999999987654           6778888888777666999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCcc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPPQ  184 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~~  184 (210)
                      |++|.||+++|+++++.+.++..
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhccc
Confidence            99999999999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-33  Score=200.21  Aligned_cols=158  Identities=30%  Similarity=0.556  Sum_probs=137.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-eEEEEECCEEEEEEEEeCCCcccccc-cCcccccCccEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFV   84 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i   84 (210)
                      +.+||+++|++|||||||+++|..+.+...+.++.+..+ .....+......+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            579999999999999999999999999888888887665 45677889999999999999877654 5677899999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC--CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEecc
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS  162 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (210)
                      +|||++++++++++ ..|+..+....  +++|++|||||+|+.....          +..+++++++++++. +++++||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999997 77887776543  6899999999999987755          889999999999997 8999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 028362          163 KT---QQNVKAVFDAAI  176 (210)
Q Consensus       163 ~~---~~~i~~~~~~i~  176 (210)
                      ++   +.||+++|++|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            97   569999998873

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-33  Score=199.98  Aligned_cols=163  Identities=20%  Similarity=0.294  Sum_probs=137.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|++|||||||+++|..+.+.. +.++....+...+.+++..+.+.+||++|+..+.     +++.+|++|+
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~il   76 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIF   76 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEE
Confidence            357999999999999999999999999855 4567777777778899999999999999998753     6888999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC----CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS  161 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  161 (210)
                      |||+++++||+++ ..|...+....    ..+|+++|+||.|+....        ...+..++++.++......+|++||
T Consensus        77 Vfd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  147 (175)
T d2bmja1          77 VFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETC  147 (175)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEB
T ss_pred             Eeecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeC
Confidence            9999999999997 77887765432    568999999999985432        1236788899998776666999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCc
Q 028362          162 SKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      |+++.|++++|..+++.+....
T Consensus       148 Ak~~~~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         148 ATYGLNVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.98  E-value=5.6e-33  Score=198.84  Aligned_cols=157  Identities=22%  Similarity=0.298  Sum_probs=125.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +++||+++|++|||||||+++|..+.+.+.+.||.+..+. .+..+  ++.+.+||+||++.+...|..++..++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            3699999999999999999999999998888888876543 23344  47889999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHH-HH----HHHcCCcEEEEe
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-EL----RKQIGASYYIEC  160 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~  160 (210)
                      ||+++++++.++...|...+.... +++|++||+||.|+....            ...+.. .+    +...+ .+++++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~e~  144 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDRE-ICCYSI  144 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEEEC
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh------------hHHHHHHHHHHHHHHhCC-CEEEEE
Confidence            999999999998544555555544 789999999999997542            222221 11    12223 478999


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 028362          161 SSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ||++|.|++++|+||++.+
T Consensus       145 Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         145 SCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CTTTCTTHHHHHHHHHHTC
T ss_pred             eCcCCcCHHHHHHHHHHcc
Confidence            9999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=3.1e-31  Score=189.76  Aligned_cols=160  Identities=17%  Similarity=0.237  Sum_probs=125.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|.++.+ ..+.||.+.... .+...  .+.+.+||++|++.++..+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIK-TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEE-EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeee-ecccc--ccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            468999999999999999999998766 345666654332 23334  47788999999999999999999999999999


Q ss_pred             EECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH--Hc--CCcEEEEec
Q 028362           87 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--QI--GASYYIECS  161 (210)
Q Consensus        87 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~S  161 (210)
                      +|+++..++.+....|...+.... .++|+++|+||+|+.+..            ..++......  ..  +..++++||
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc------------CHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            999999999988666666665544 789999999999997653            2222222211  11  224788999


Q ss_pred             cCCCCCHHHHHHHHHHHHhCC
Q 028362          162 SKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       162 a~~~~~i~~~~~~i~~~~~~~  182 (210)
                      |++|+|++++|+||++.+.++
T Consensus       145 a~~g~gv~e~~~~l~~~i~~r  165 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDDISSR  165 (165)
T ss_dssp             TTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHcC
Confidence            999999999999999988653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=6e-31  Score=190.12  Aligned_cols=161  Identities=20%  Similarity=0.262  Sum_probs=121.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccE
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   82 (210)
                      ..+++.+||+++|++|||||||+++|.++.+... .++.+.+. ..+...  .+.+.+||++|++.++..|..+++.+++
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~-~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNI-KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEEE-EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeeeE-EEeccC--CeeEeEeeccccccchhHHHHHhhccce
Confidence            4567889999999999999999999998887432 22222221 123333  4788999999999999999999999999


Q ss_pred             EEEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----HcCCcEE
Q 028362           83 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIGASYY  157 (210)
Q Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  157 (210)
                      +++|||++++.++.++...|........ .++|+++|+||+|+....            ......+...    .....++
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~~~  154 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVWQI  154 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCEEE
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc------------cHHHHHHHHHHHHHHhcCCEE
Confidence            9999999999999998444444444433 589999999999997653            2222221111    1123578


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 028362          158 IECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      +++||++|+|++++|+|+++.+
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCHHHHHHHHHhcC
Confidence            9999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=7.4e-31  Score=190.76  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=119.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   83 (210)
                      ..++.+||+++|++|||||||+++|..+.+.. ..||.+.... .....  .+.+.+||++|++.++..+..++.+++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVE-TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEE-EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEE-EEeeC--CEEEEEEecccccccchhHHhhhccceeE
Confidence            45678999999999999999999998776543 2344433322 23334  47788999999999999999999999999


Q ss_pred             EEEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH-----HHHcCCcEE
Q 028362           84 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL-----RKQIGASYY  157 (210)
Q Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (210)
                      ++|+|++++.++.+....|...+.... .+.|++||+||+|+....            ...+..+.     +... ..++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~-~~~~  155 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDR-SWSI  155 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSS-CEEE
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc------------CHHHHHHHHHHHHHhhC-CCEE
Confidence            999999999999988544445555544 689999999999997542            23332221     1122 2478


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ++|||++|+|++++|+||++.+.+
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=3.3e-30  Score=185.82  Aligned_cols=158  Identities=18%  Similarity=0.238  Sum_probs=120.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      +++.+||+++|++|||||||+++|..+.+... .+|.+..+ ....  ...+.+.+||+||++.++..+..+++.+++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~~-~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ETVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEEE-EEEE--ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeeeE-EEee--ccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            46789999999999999999999998775432 23332221 1222  33478889999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH-H----HHHcCCcEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-L----RKQIGASYYI  158 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~  158 (210)
                      +|+|+++++++.++...|...+.... .+.|+++|+||+|+.+..            ...++.. +    +...+ .+++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~-~~~~  151 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRN-WYVQ  151 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSC-EEEE
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc------------cHHHHHHHHHHHHHHhCC-CEEE
Confidence            99999999999998555555565543 689999999999997653            2222222 1    11122 4788


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++||++|+||+|+|+||.+.+
T Consensus       152 e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         152 PSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeeCCCCcCHHHHHHHHHHhc
Confidence            999999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=179.02  Aligned_cols=159  Identities=15%  Similarity=0.208  Sum_probs=120.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEE
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   88 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   88 (210)
                      +||+|+|++|||||||+++|..+.+...+..+...    ....+...+.+.+||++|...+...+..++..++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            69999999999999999999998876554443322    23344566889999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 028362           89 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  167 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (210)
                      ++++.++..+...+.+.+.... ...|+++++||.|+.+...       ...+.......++...+ .+++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~-~~~~~~SAktg~g  148 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRN-WYIQATCATSGDG  148 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCC-EEEEECBTTTTBT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCC-CEEEEeECCCCCC
Confidence            9999999988555555555444 6789999999999876532       00011111122222334 4889999999999


Q ss_pred             HHHHHHHHHHHH
Q 028362          168 VKAVFDAAIKVV  179 (210)
Q Consensus       168 i~~~~~~i~~~~  179 (210)
                      |+++|+||++++
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=7.9e-26  Score=162.89  Aligned_cols=159  Identities=18%  Similarity=0.243  Sum_probs=115.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .++.+||+|+|.+|||||||++++..+.+... .++.... .......+  +.+.+||++|++..+..+..++..+++++
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee-EEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            35779999999999999999999999876532 2222211 22233333  67888999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH----HcCCcEEEE
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIGASYYIE  159 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  159 (210)
                      +|+|.++..++......+........ ...|+++|+||+|+....            ...+......    .....++++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~  155 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQWHIQA  155 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC------------cHHHHHHHHHHHhhHhcCCEEEE
Confidence            99999999999877433443433333 689999999999997653            2222332222    112347999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 028362          160 CSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       160 ~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      +||++|+|+++++++|.+++
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.8e-26  Score=168.51  Aligned_cols=167  Identities=18%  Similarity=0.176  Sum_probs=118.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|+.|||||||+++|..+.++..+.+        +..+....+.+.+||++|++.++..|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~--------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV--------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE--------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE--------EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            579999999999999999999998776433222        122333447889999999999999999999999999999


Q ss_pred             EECCChhHH----------HHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccC-----CCCCCccCHHHHHH---
Q 028362           87 FSLVSRASY----------ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLAD-----HPGLVPVTTAQGEE---  147 (210)
Q Consensus        87 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~-----~~~~~~~~~~~~~~---  147 (210)
                      +|+++..++          .+....|...+.... ...|+++++||+|+........+     ..........++..   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999988754          233356777776554 68999999999998654321111     01111122222221   


Q ss_pred             --HHHHc-----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          148 --LRKQI-----GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       148 --~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                        +....     +..++++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111     23367789999999999999999887754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=4.9e-26  Score=162.33  Aligned_cols=161  Identities=15%  Similarity=0.212  Sum_probs=123.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      .+.+||+++|.+|||||||+++|.++.+... .++..... .....++  +.+.+||.+|.+.+...+...+..++++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV-ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE-EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee-eeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            4569999999999999999999999987643 34433222 2233344  678889999999999999999999999999


Q ss_pred             EEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHH----HHHHcCCcEEEEe
Q 028362           86 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE----LRKQIGASYYIEC  160 (210)
Q Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  160 (210)
                      ++|+.+..++......+...+.... ...|+++|+||.|+.....           ..+....    ++...+ .+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-----------~~~i~~~~~~~~~~~~~-~~~~~~  146 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-----------SSEMANSLGLPALKDRK-WQIFKT  146 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-----------HHHHHHHHTGGGCTTSC-EEEEEC
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-----------HHHHHHHHHHHHHhcCC-CEEEEE
Confidence            9999998888887555565555544 6899999999999976532           2222222    222233 489999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|.||+++|++|++.+.++
T Consensus       147 SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         147 SATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTC
T ss_pred             eCCCCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999988654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=164.76  Aligned_cols=170  Identities=16%  Similarity=0.126  Sum_probs=126.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +++||+++|++|||||||+++|..+.+.  +.||.+..+.   .+....+.+.+||++|++.++..|..+++.++++++|
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            5799999999999999999999988773  5788876543   2334557888999999999999999999999999999


Q ss_pred             EECCChh----------HHHHHHHHHHHHHhccC-CCCcEEEEeeCccccccccccc------CCCCCCccCHHHHHHHH
Q 028362           87 FSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLA------DHPGLVPVTTAQGEELR  149 (210)
Q Consensus        87 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~~~  149 (210)
                      +|+++..          .+.+....|...+.... .+.|+++++||.|+........      +..............+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998764          33444478888887665 7899999999999865533111      01111112333333332


Q ss_pred             HH----c-----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          150 KQ----I-----GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       150 ~~----~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ..    .     ....+++|||+++.||+++|+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            21    1     12356789999999999999999888764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.1e-25  Score=162.58  Aligned_cols=157  Identities=16%  Similarity=0.109  Sum_probs=112.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC--------cccc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLSY   77 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   77 (210)
                      .-.|+|+|.+|||||||+|+|.+....  .....++...........+  ..+.+||+||.......+        ...+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            347999999999999999999987532  2222233222232334444  467789999986543322        2346


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      .++|++++|+|++++.....  ..|...+.....+.|+++|+||+|+...             ..+....+.+.++...+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-------------~~~~~~~~~~~~~~~~~  147 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-------------PEEAMKAYHELLPEAEP  147 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-------------HHHHHHHHHHTSTTSEE
T ss_pred             ccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-------------HHHHHHHHHhhcccCce
Confidence            78999999999987654432  4666777776678999999999999653             22344555566666688


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++||+++.||+++++++.+.+.+
T Consensus       148 ~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         148 RMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCC
Confidence            899999999999999999987743

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.8e-25  Score=162.26  Aligned_cols=169  Identities=16%  Similarity=0.160  Sum_probs=113.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA   86 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   86 (210)
                      +.+||+++|++|||||||+++|.   +...+.||.+.... .+..  +.+.+.+||++|++.++..|..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~-~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY-DFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE-EEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE-EEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999994   45667788875432 3333  447788999999999999999999999999999


Q ss_pred             EECCChh----------HHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccC------CCCCCccCHHHHHHHH
Q 028362           87 FSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLAD------HPGLVPVTTAQGEELR  149 (210)
Q Consensus        87 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~~  149 (210)
                      +|.++..          .+......|...+.... .++|+++++||+|+........+      ...-.+...+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998753          34444345555565544 68999999999998654321111      1111112333444333


Q ss_pred             HHc----------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          150 KQI----------GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       150 ~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ...          ....+++|||+++.||+++|+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            321          11255679999999999999998877654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.3e-24  Score=151.33  Aligned_cols=152  Identities=15%  Similarity=0.172  Sum_probs=114.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEEC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL   89 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   89 (210)
                      ||+++|++|||||||+++|.++.+. ...|+......   ......+.+.+||++|...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE---ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE---EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE---EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            8999999999999999999998875 34565543322   2333346678899999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH-----------HcCCcEE
Q 028362           90 VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----------QIGASYY  157 (210)
Q Consensus        90 ~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  157 (210)
                      ++..++......+........ .+.|+++++||.|+....            ...+..+...           .....++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~  145 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------------SEAELRSALGLLNTTGSQRIEGQRPVEV  145 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------------CHHHHHHHHTCSSCCC---CCSSCCEEE
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC------------CHHHHHHHhhhhhhhHHHhhcccCCCEE
Confidence            999998887544554444333 689999999999996642            2222211111           1122478


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 028362          158 IECSSKTQQNVKAVFDAAIK  177 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~  177 (210)
                      ++|||++|+|++|+|+||.+
T Consensus       146 ~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         146 FMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEBTTTTBSHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHhC
Confidence            99999999999999999864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=3.9e-24  Score=154.60  Aligned_cols=159  Identities=16%  Similarity=0.211  Sum_probs=113.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV   84 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i   84 (210)
                      .++..||+|+|++|||||||+++|..+.+... .|+..... ..+..++  ..+..||+.++..+...+..+.+..++++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS-EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC-EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce-eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            36789999999999999999999998877543 34433332 2344455  45677999999999999999999999999


Q ss_pred             EEEECCChhHHHHHHHHHHHHHhccC-CCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc-----------
Q 028362           85 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------  152 (210)
Q Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  152 (210)
                      +++|+++...+......+........ .+.|+++++||.|+...            ....+..+.....           
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~  153 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  153 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc------------CCHHHHHHHHhhcccchhhhhhhH
Confidence            99999999999887555555555443 78999999999998764            2333333322211           


Q ss_pred             -----CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          153 -----GASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       153 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                           ...++++|||++|+||+|+|+||++.+
T Consensus       154 ~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         154 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                 123688999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.6e-25  Score=156.58  Aligned_cols=150  Identities=17%  Similarity=0.259  Sum_probs=109.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccccc--------cCccccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP-TDYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR   78 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   78 (210)
                      +||+++|.+|||||||+|+|.+.... ....| +........+...+  ..+.+||++|..+...        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999976543 12222 22222233444555  5667899999755432        1234477


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|++++++|..++.++... ..|...+......+|+++|+||+|+.......                  .+.+..+++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~------------------~~~~~~~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLGM------------------SEVNGHALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE------------------EEETTEEEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHHH------------------HHhCCCcEE
Confidence            89999999999988877665 56666777666789999999999997654210                  123345899


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 028362          159 ECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ++||+++.||++++++|++.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999998864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=8.8e-24  Score=152.68  Aligned_cols=159  Identities=17%  Similarity=0.123  Sum_probs=104.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccc----cC---cccccCccE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYRGADV   82 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~---~~~~~~~~~   82 (210)
                      .|+|+|.+|||||||+|+|.+........+..................+++||+||......    ..   ...+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            48999999999999999998765432222222222222333344445678899999543211    11   123667899


Q ss_pred             EEEEEECCChh--HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362           83 FVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus        83 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                      +++++|.....  ++... ..|+........++|+++|+||+|+....            ..+...+.....+. +++.+
T Consensus        83 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~------------~~~~~~~~~~~~~~-~~~~i  148 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEE------------AVKALADALAREGL-AVLPV  148 (180)
T ss_dssp             EEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHH------------HHHHHHHHHHTTTS-CEEEC
T ss_pred             hhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHH------------HHHHHHHHHHhcCC-eEEEE
Confidence            99999986543  22222 33443333322468999999999997653            23344444444554 88999


Q ss_pred             ccCCCCCHHHHHHHHHHHHhCC
Q 028362          161 SSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       161 Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                      ||++|.|++++++.|.+.+...
T Consensus       149 SA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         149 SALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHTS
T ss_pred             EcCCCCCHHHHHHHHHHHHhhc
Confidence            9999999999999998888654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.9e-22  Score=149.24  Aligned_cols=169  Identities=14%  Similarity=0.148  Sum_probs=119.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccccCccEEEE
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL   85 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   85 (210)
                      +..+||+++|++|||||||++++..+.+    .||.+... ..+.+++  +.+.+||++|++.++..|..++.+++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~-~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE-TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEE-EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEE-EEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            4578999999999999999999987654    46766432 2344555  778889999999999999999999999999


Q ss_pred             EEECCCh----------hHHHHHHHHHHHHHhccC-CCCcEEEEeeCccccccccccc-----------C-----CC---
Q 028362           86 AFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLA-----------D-----HP---  135 (210)
Q Consensus        86 v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~piilv~nK~D~~~~~~~~~-----------~-----~~---  135 (210)
                      |+|+++.          ..+.+....|...+.... .++|++|++||+|+........           .     ..   
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9999864          234454466777777655 7899999999999866532110           0     00   


Q ss_pred             -CCCccCHHHHHHH-----HHHc-------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          136 -GLVPVTTAQGEEL-----RKQI-------GASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       136 -~~~~~~~~~~~~~-----~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                       ........++..+     .+..       .....++|||.++.||+.+|+.+.+.+++
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence             0001112233222     2211       12345679999999999999988777764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=3.4e-22  Score=143.05  Aligned_cols=155  Identities=20%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc---------ccCccccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLSYR   78 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~   78 (210)
                      +|+|+|.+|||||||+++|.+....  .....++...........  .+.+.+||++|.....         ......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccc--ccccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999976532  122222222222223333  3667889999953322         12223356


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI  158 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (210)
                      .+|+++++.|.+.......  ..+...+...  ++|+++|+||+|+....            ..+...++ .+.+..+++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~-~~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPEL-YSLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHH-GGGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHH-HhcCCCCeE
Confidence            8999999999876654433  4555555543  58999999999997542            22222232 233455678


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          159 ECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       159 ~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      ++||++|.||+++++++.+.+.++.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999886553

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=6.4e-21  Score=138.00  Aligned_cols=158  Identities=22%  Similarity=0.219  Sum_probs=101.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccC----------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------   73 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------   73 (210)
                      +..+||+|+|.+|||||||+|+|.+....  .....+...........++.  .+.++|+||.......+          
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhH
Confidence            35699999999999999999999976532  22223332222334455664  46678999975433222          


Q ss_pred             --cccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH
Q 028362           74 --PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ  151 (210)
Q Consensus        74 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
                        ...++.+|++++|+|++.+..-..  ..+...+..  .+.|+++|+||+|+.....          ....+..+...+
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~--~~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~  149 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMER--RGRASVVVFNKWDLVVHRE----------KRYDEFTKLFRE  149 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSTTGG----------GCHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHH--cCCceeeeccchhhhcchh----------hhhhhHHHHHHH
Confidence              223567899999999976544332  345555544  3689999999999876543          233333332222


Q ss_pred             ----cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          152 ----IGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       152 ----~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                          .+..+++++||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         150 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             HCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence                3445789999999999999999997654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.6e-21  Score=143.69  Aligned_cols=117  Identities=16%  Similarity=0.164  Sum_probs=88.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-ccCcccccCccEEEEEEE
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFVLAFS   88 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d   88 (210)
                      +|+|+|++|||||||+++|..+.+... .|+...++......++..+.+.+||++|++.++ ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            689999999999999999999887654 455555544333335566789999999998885 567788899999999999


Q ss_pred             CCChhHH-HHHHHHHHHHHhc---cCCCCcEEEEeeCcccccc
Q 028362           89 LVSRASY-ENVLKKWIPELQH---YSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        89 ~~~~~s~-~~~~~~~~~~~~~---~~~~~piilv~nK~D~~~~  127 (210)
                      +++..++ ....+.+...+..   ....+|++||+||+|+...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998764 3332333344332   2357899999999999765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=1.1e-21  Score=138.67  Aligned_cols=148  Identities=19%  Similarity=0.210  Sum_probs=98.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc-c-cC-------cccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-R-LR-------PLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~-~~-------~~~~   77 (210)
                      +||+++|.+|||||||+|+|.+....  .....+............+  ..+.+||+||..... . ..       ...+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999975432  2222222222333445555  567789999953221 1 11       1125


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ..+|++++|+|.+++......  .+...+    ...|+++++||.|+....            ..++.....  ....++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~~~~--~~~~~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKL--GTDRHM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHH--TCSTTE
T ss_pred             HhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchh------------hhHHHHHHh--CCCCcE
Confidence            679999999999988765543  222222    457899999999997653            233332221  122478


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 028362          158 IECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      +++||++|.||++++++|.++
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999998763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.85  E-value=1.5e-21  Score=140.71  Aligned_cols=162  Identities=18%  Similarity=0.130  Sum_probs=105.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCce---eeee---eEEEEECCEEEEEEEEeCCCcccccccCcccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTV---FDNF---SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY   77 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~~~--~~~~---~~~~---~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   77 (210)
                      .+.++|+++|.+|+|||||+|+|.........  .++.   +...   .......+  +.+.++|++|+.+|.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            46789999999999999999999964321111  1111   0000   11122333  5677899999999887777788


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH---cCC
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---IGA  154 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  154 (210)
                      ..+|++++|+|+++....+.  ......+..  .++|+++|+||+|+.....        .....+....+...   ...
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~--~~~~~~~~~--~~~p~iiv~NKiD~~~~~~--------~~~~~~~~~~~~~~~~~~~~  148 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQT--GEHMLILDH--FNIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN  148 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred             hhccccccccccccccchhh--hhhhhhhhh--cCCcceeccccccccCHHH--------HHHHHHHHHHHHHHhhcCCC
Confidence            89999999999987654332  222233333  4789999999999976532        00011122222222   122


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      .+++++||++|+|++++++.+.+.+..
T Consensus       149 ~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         149 SSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            478999999999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=5.7e-21  Score=137.95  Aligned_cols=152  Identities=17%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCccccc---------------ccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------------RLRP   74 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------------~~~~   74 (210)
                      .|+|+|.+|||||||+|+|.+........|...... ......    .+.+||+||.....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~-~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc-cccccc----cceecccCCceeccccccccccccchhhhhhhh
Confidence            689999999999999999998765443333221111 112222    25679999953221               1122


Q ss_pred             ccccCccEEEEEEECCChhHHHHH---------HHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHH
Q 028362           75 LSYRGADVFVLAFSLVSRASYENV---------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG  145 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~  145 (210)
                      ..++.+|++++|+|...+......         ...+++.+..  .++|+++|+||+|+.....             ...
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~-------------~~~  141 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQ-------------EVI  141 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHH-------------HHH
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHH-------------HHH
Confidence            345678999999999765433221         0122333333  3789999999999865421             112


Q ss_pred             HHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          146 EELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       146 ~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ..+.+...      ...++++||++|.||+++++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         142 NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            22222221      1247889999999999999999987753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=1.5e-20  Score=140.43  Aligned_cols=169  Identities=16%  Similarity=0.153  Sum_probs=103.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee-----eeeeE------------EEEECCEEEEEEEEeCCCcccccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVF-----DNFSA------------NVVAEGTTVNLGLWDTAGQEDYNR   71 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~-----~~~~~------------~~~~~~~~~~~~i~D~~G~~~~~~   71 (210)
                      ..|+|+|.+++|||||+++|..............     .....            ...+......+.++||||+..|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            3499999999999999999986421111001100     00000            001123345678899999999988


Q ss_pred             cCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC-------CCCcc---C
Q 028362           72 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVPV---T  141 (210)
Q Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~-------~~~~~---~  141 (210)
                      .....+..+|++|+|+|+.+.-....  ...+..+..  .++|+++++||+|+...........       ....+   .
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~  161 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKPQT--QEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcccch--hHHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHH
Confidence            88888999999999999986543332  344444443  3689999999999976643111100       00000   0


Q ss_pred             HHHH----HHHHHH-------------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          142 TAQG----EELRKQ-------------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       142 ~~~~----~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      ....    ..+...             .+..+++++||.+|.|++++++.+.....+
T Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            0011    111111             112478899999999999999988776543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=3e-21  Score=139.74  Aligned_cols=158  Identities=17%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCcccccc----cCcc---cccCc
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LRPL---SYRGA   80 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~~~~---~~~~~   80 (210)
                      +|+|+|.+|||||||+|+|.+..... .+.+ |...........++  ..+++||+||..+...    +...   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC--cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            68999999999999999998755321 1222 22222222222233  3567899999633221    1111   23457


Q ss_pred             cEEEEEEECCChhHHHHH--H--HHHHHHHh-ccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-C
Q 028362           81 DVFVLAFSLVSRASYENV--L--KKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-A  154 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~--~--~~~~~~~~-~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  154 (210)
                      +.++++++..........  .  ........ ....++|+++|+||+|+....              +....+...+. .
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccC
Confidence            888888876544321111  0  11111222 222478999999999996542              22333334332 2


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCc
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  183 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  183 (210)
                      .+++.+||++|.||+++++++.+.+...+
T Consensus       147 ~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         147 YPVFPISAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence            47789999999999999999999886544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.81  E-value=2.8e-20  Score=135.81  Aligned_cols=166  Identities=15%  Similarity=0.077  Sum_probs=105.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC---C--Cceeeee---eEEE-----------------EECCEEEEE
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY---I--PTVFDNF---SANV-----------------VAEGTTVNL   58 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~---~--~~~~~~~---~~~~-----------------~~~~~~~~~   58 (210)
                      |.+.+++|+++|..++|||||+++|.+.......   .  .+....+   ....                 ........+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            3567899999999999999999999864321100   0  0000000   0000                 011234678


Q ss_pred             EEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCC
Q 028362           59 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV  138 (210)
Q Consensus        59 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~  138 (210)
                      .++|+||+..|.......+..+|++++|+|+.+....... .+.+..+... ...+++++.||+|+.+...        .
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~--------~  150 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEK--------A  150 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHH--------H
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHH--------H
Confidence            9999999999987777778889999999999876322222 2223333332 2345788899999976532        0


Q ss_pred             ccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          139 PVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       139 ~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      ........++....+  ..+++++||++|+||+++++.+.+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         151 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            011223333333332  24789999999999999999987754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=1.6e-19  Score=131.57  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=92.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEeCCCccccc-------------ccCc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYN-------------RLRP   74 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~-------------~~~~   74 (210)
                      .+|+|+|.+|||||||+|+|.+........+....+... .....   ..+.+.|++|-....             ..+.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccchhhhHHhhhh
Confidence            489999999999999999999754321111111111111 11122   223446666532211             1122


Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHc--
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI--  152 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  152 (210)
                      ..+..++++++|+|++.+..-..  ..+++.+..  .++|+++|+||+|+.....           ..+....+.+.+  
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~--~~~piivv~NK~D~~~~~~-----------~~~~~~~~~~~l~~  165 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDD--VQMYEFLKY--YGIPVIVIATKADKIPKGK-----------WDKHAKVVRQTLNI  165 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSCGGG-----------HHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhccccccccc--ccccccccc--ccCcceechhhccccCHHH-----------HHHHHHHHHHHhcc
Confidence            33456789999999976543222  355555554  3689999999999865432           222233333332  


Q ss_pred             -CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          153 -GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       153 -~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                       +..+++++||+++.|+++++++|.+.+.
T Consensus       166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         166 DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence             3457899999999999999999988763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.4e-19  Score=133.08  Aligned_cols=166  Identities=13%  Similarity=0.054  Sum_probs=104.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCC---CC--Cc---eeeeeeEEEE----------------------ECCE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YI--PT---VFDNFSANVV----------------------AEGT   54 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~---~~--~~---~~~~~~~~~~----------------------~~~~   54 (210)
                      .+++++|+++|..++|||||+++|....-...   ..  .+   ..........                      ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            35679999999999999999999985321100   00  00   0000000000                      0113


Q ss_pred             EEEEEEEeCCCcccccccCcccccCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccC
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD  133 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~  133 (210)
                      ...+.++|+||+.+|.......+..+|++|+|+|+.+.- .-+.  ...+..+... .-.|+|++.||+|+......   
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t--~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~~---  158 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT--REHFVALGII-GVKNLIIVQNKVDVVSKEEA---  158 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH--HHHHHHHHHT-TCCCEEEEEECGGGSCHHHH---
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhH--HHHHHHHHHc-CCceeeeccccCCCccchHH---
Confidence            356889999999999777677788899999999998752 2111  2233333332 23588999999999765420   


Q ss_pred             CCCCCccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028362          134 HPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                           .........+.....  ..|++++||++|.||+++++.|.+.+..
T Consensus       159 -----~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         159 -----LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             -----HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -----HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence                 011122222222222  2488999999999999999998887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2e-19  Score=129.19  Aligned_cols=156  Identities=17%  Similarity=0.115  Sum_probs=102.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCC-ceeeeeeEEEEECCEEEEEEEEeCCCccc---------ccccCcccc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLSY   77 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   77 (210)
                      -.|+|+|.+|||||||+|+|.+..... ...+ +...........+..  .+..||++|...         .........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccch
Confidence            358999999999999999999765321 1122 222222223333443  345588887432         122333445


Q ss_pred             cCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 028362           78 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY  157 (210)
Q Consensus        78 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (210)
                      ..+++++++.|..+......   .+...+..  ...|.++|+||.|......          ........+..+++..++
T Consensus        84 ~~~~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~~~~  148 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFLDI  148 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCSEE
T ss_pred             hhcceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCCCCE
Confidence            67888889999875443322   22222222  4678999999999876643          344556666777887799


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhC
Q 028362          158 IECSSKTQQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       158 ~~~Sa~~~~~i~~~~~~i~~~~~~  181 (210)
                      +++||++|.||+++++++.+.+.+
T Consensus       149 ~~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         149 VPISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             EEEeCcCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999887643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.76  E-value=7.1e-19  Score=127.97  Aligned_cols=164  Identities=19%  Similarity=0.154  Sum_probs=106.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC-----C--CCC----CCCCce---eeeee-EEEEECCEEEEEEEEeCCCccccc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN-----K--FPT----DYIPTV---FDNFS-ANVVAEGTTVNLGLWDTAGQEDYN   70 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~-----~--~~~----~~~~~~---~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~   70 (210)
                      +++++|+++|..++|||||+++|...     .  +..    ...+..   +.+.. ....+......+.++|+||+.+|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            35799999999999999999999731     1  100    000110   11111 112233344667889999999998


Q ss_pred             ccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHH
Q 028362           71 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK  150 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
                      ......+..+|++++|+|+.+...-+.  .+.+..+... .-.|+|++.||+|+..+...       ......+...+..
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT--~~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~-------~~~i~~~i~~~l~  150 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQT--REHLLLARQI-GVEHVVVYVNKADAVQDSEM-------VELVELEIRELLT  150 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhH--HHHHHHHHHh-cCCcEEEEEecccccccHHH-------HHHHHHHHHHHHH
Confidence            777778889999999999987644332  3333343332 23578899999999654320       0012334555555


Q ss_pred             HcCC----cEEEEeccCCC----------CCHHHHHHHHHHHH
Q 028362          151 QIGA----SYYIECSSKTQ----------QNVKAVFDAAIKVV  179 (210)
Q Consensus       151 ~~~~----~~~~~~Sa~~~----------~~i~~~~~~i~~~~  179 (210)
                      .++.    .|++++||++|          .++.++++.+.+.+
T Consensus       151 ~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            5543    57999999988          58888888876654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.2e-17  Score=120.17  Aligned_cols=116  Identities=12%  Similarity=0.096  Sum_probs=78.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCcccc----cCccE
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY----RGADV   82 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~----~~~~~   82 (210)
                      .+.+|+|+|++|||||||+|+|.++.+.+.    +... .....+...+..+.+||+||++.++..+..++    ..++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQ-EPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCS-SCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEec-ceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            356999999999999999999998876432    2111 11222334445678899999988766555443    34578


Q ss_pred             EEEEEECCC-hhHHHHHH---HHHHHHHhccC-CCCcEEEEeeCcccccc
Q 028362           83 FVLAFSLVS-RASYENVL---KKWIPELQHYS-PGVPVVLVGTKLDLRED  127 (210)
Q Consensus        83 ~i~v~d~~~-~~s~~~~~---~~~~~~~~~~~-~~~piilv~nK~D~~~~  127 (210)
                      +++++|+.+ ..++....   ..+...+.... .++|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888888764 44444441   22233333333 68999999999999765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.69  E-value=1.4e-16  Score=117.88  Aligned_cols=158  Identities=15%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHc--CCCCCCCC----------Cc-------------------eeeee-eEEEE
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTS--NKFPTDYI----------PT-------------------VFDNF-SANVV   50 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~--~~~~~~~~----------~~-------------------~~~~~-~~~~~   50 (210)
                      +..+..+||+++|..++|||||+++|+.  +.......          .+                   .+.+. .....
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3456789999999999999999999973  22211000          00                   00000 00111


Q ss_pred             ECCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccc
Q 028362           51 AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKH  129 (210)
Q Consensus        51 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~  129 (210)
                      .......+.++|+||+..|..........+|++++|+|+.+...-+.  .+.+..+..  .++| ++++.||+|+.+..+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt--~e~~~~~~~--~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASL--LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHH--TTCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch--HHHHHHHHH--cCCCEEEEEEEccccccccc
Confidence            11223567889999999998877778889999999999987644332  233333333  2454 788899999976532


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          130 YLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                      ...      .....++..+....+.    .+++++||.+|.||.+
T Consensus       160 ~~~------~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         160 RVF------ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHH------HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             eeh------hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            000      0223445556665543    3789999999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.2e-16  Score=116.93  Aligned_cols=146  Identities=18%  Similarity=0.170  Sum_probs=91.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC--------CCCC----CCCCce---eeee---eEEEEECCEEEEEEEEeCCCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSN--------KFPT----DYIPTV---FDNF---SANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~--------~~~~----~~~~~~---~~~~---~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      +++++|+++|..++|||||+++|...        ....    ...+..   +.+.   ...+..++  ..+.++|+||+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCch
Confidence            45799999999999999999999721        0100    000000   1111   11223344  566789999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCc-EEEEeeCcccccccccccCCCCCCccCHHHHH
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGE  146 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  146 (210)
                      +|.......+..+|++|+|+|+.+.-..+.  .+.+..+...  ++| ++++.||+|+.+....       .....+++.
T Consensus        79 df~~~~~~~~~~aD~avlVvda~~Gv~~qt--~~~~~~~~~~--gi~~iiv~iNK~D~~~~~~~-------~~~~~~~i~  147 (204)
T d2c78a3          79 DYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEVR  147 (204)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEecccCCCHHH-------HHHHHHHHH
Confidence            998877788899999999999987765544  3334444432  565 7778999998654210       001234445


Q ss_pred             HHHHHcCC----cEEEEeccCC
Q 028362          147 ELRKQIGA----SYYIECSSKT  164 (210)
Q Consensus       147 ~~~~~~~~----~~~~~~Sa~~  164 (210)
                      .+...++.    .++++.|+..
T Consensus       148 ~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         148 DLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHhcCCCcccceeeeeechh
Confidence            55554432    4678888753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=9.9e-16  Score=109.94  Aligned_cols=162  Identities=15%  Similarity=0.018  Sum_probs=82.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeeeEEEEECCEEEEEEEEeCCCcccccc----------c
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----------L   72 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~   72 (210)
                      ....++|+|+|.+|||||||+|+|.+.......  .++............+ ...+..++.++......          .
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALGE   91 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhhh
Confidence            446799999999999999999999887643221  1222111111122222 22222222222111110          1


Q ss_pred             CcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHH-
Q 028362           73 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-  151 (210)
Q Consensus        73 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  151 (210)
                      ..........++.+.+.........  ..+...+..  ...++++++||.|+.....        .....+...+.... 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~v~~k~D~~~~~~--------~~~~~~~~~~~l~~~  159 (188)
T d1puia_          92 YLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD--SNIAVLVLLTKADKLASGA--------RKAQLNMVREAVLAF  159 (188)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH--TTCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGGG
T ss_pred             hhhhhhheeEEEEeecccccchhHH--HHHHHHhhh--ccccccchhhhhhccCHHH--------HHHHHHHHHHHHHhh
Confidence            1111223445556666654433322  233334333  3678999999999866532        00111222222222 


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          152 IGASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       152 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                      .+..+++.+||++|.||+++++.|.+.+
T Consensus       160 ~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         160 NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            2345788999999999999999886643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=8.3e-15  Score=109.79  Aligned_cols=163  Identities=17%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHc--CCCCC--------------C---CCCce----------eeeeeE-EEEECC
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT--------------D---YIPTV----------FDNFSA-NVVAEG   53 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~--~~~~~--------------~---~~~~~----------~~~~~~-~~~~~~   53 (210)
                      ..+..++|+++|..++|||||+.+|+.  +....              .   .....          +..... ......
T Consensus        20 ~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~   99 (245)
T d1r5ba3          20 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET   99 (245)
T ss_dssp             SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred             cCCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc
Confidence            346778999999999999999999952  11100              0   00000          000000 001112


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHH-----HHHHHHHHHHhccCCCC-cEEEEeeCcccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-----NVLKKWIPELQHYSPGV-PVVLVGTKLDLRED  127 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-----~~~~~~~~~~~~~~~~~-piilv~nK~D~~~~  127 (210)
                      ....+.+.|+||+..|..........+|++++|+|+.+...-.     ......+..+...  ++ +++++.||+|+...
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iNKmD~~~~  177 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVINKMDEPSV  177 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTC
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEEcCCCCcc
Confidence            2356788999999999988888889999999999998642110     0012222232222  34 47888999999753


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHc-C-----CcEEEEeccCCCCCHHHHH
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQI-G-----ASYYIECSSKTQQNVKAVF  172 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~Sa~~~~~i~~~~  172 (210)
                      ...    ........++...+..+. +     ..+++++||++|+||.+++
T Consensus       178 ~~~----e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         178 QWS----EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             SSC----HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             chh----HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            210    000001122233332332 1     2479999999999997754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=7e-14  Score=105.85  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc--CCCCCC---CC-Cce----------eeee---eEEEEECCEEEEEEEEeCCCcc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS--NKFPTD---YI-PTV----------FDNF---SANVVAEGTTVNLGLWDTAGQE   67 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~--~~~~~~---~~-~~~----------~~~~---~~~~~~~~~~~~~~i~D~~G~~   67 (210)
                      +.-+|+++|..++|||||+.++..  +.....   .. .+.          +.++   ...+..++  ..++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            344799999999999999999973  221110   00 000          0000   11233444  667889999999


Q ss_pred             cccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           68 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        68 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +|.......++.+|++|+|+|..+.-..... ..|. ....  .++|.+++.||.|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~-~a~~--~~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEK--YKVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHH-HHHT--TTCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHH-HHHH--cCCCEEEEEeccccccc
Confidence            9999888899999999999999887666553 3443 3333  37999999999997654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=4.5e-15  Score=110.81  Aligned_cols=155  Identities=13%  Similarity=0.060  Sum_probs=96.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc--CCCCC-------------------------------CCCCceeeeeeEEEEE
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-------------------------------DYIPTVFDNFSANVVA   51 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~--~~~~~-------------------------------~~~~~~~~~~~~~~~~   51 (210)
                      .+..++|+++|..++|||||+.+|+.  +....                               ..--|+... ...+..
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~-~~~~~~   81 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIA-LWKFET   81 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCS-CEEEEC
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccc-eeEecc
Confidence            45679999999999999999999962  11110                               000011000 111222


Q ss_pred             CCEEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHH-----HHHHHHHHHHHhccCCCCc-EEEEeeCcccc
Q 028362           52 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY-----ENVLKKWIPELQHYSPGVP-VVLVGTKLDLR  125 (210)
Q Consensus        52 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~~p-iilv~nK~D~~  125 (210)
                      ++  +.+.++|+||+.+|.......+..+|++|+|+|+.....-     .......+.....  -++| +|++.||+|+.
T Consensus        82 ~~--~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~--~gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          82 PK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV  157 (239)
T ss_dssp             SS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred             CC--EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH--cCCCeEEEEEECCCCC
Confidence            33  6788899999999988888889999999999999765210     0011222222222  2455 78889999997


Q ss_pred             cccccccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 028362          126 EDKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  170 (210)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  170 (210)
                      +.....      ......+...+....+.    .+++++|+..|.|+-+
T Consensus       158 ~~d~~~------~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         158 KWDESR------FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TTCHHH------HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCHHH------HHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            653200      00123445555555543    4689999999988744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=7.7e-15  Score=108.73  Aligned_cols=158  Identities=12%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------CCCCceeeeee-EEEEECC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS--NKFPT-----------------------------DYIPTVFDNFS-ANVVAEG   53 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~-~~~~~~~   53 (210)
                      +++++|+++|..++|||||+.+|+.  +....                             +...  +.+.. .....+.
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~r--g~ti~~~~~~~~~   78 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERER--GVTINLTFMRFET   78 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcC--CccccceEEEEec
Confidence            3579999999999999999998862  11110                             0000  00000 0111223


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHH-----HHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-----NVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-----~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ..+.+.++|+||+.+|.......+.-+|++|+|+|+.+...-.     ....+-+...... ...++|++.||+|+....
T Consensus        79 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          79 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSST
T ss_pred             CCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccCCCcc
Confidence            3467888999999999988888889999999999998753211     1111222222221 234688889999987532


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcC----CcEEEEeccCCCCCHHH
Q 028362          129 HYLADHPGLVPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKA  170 (210)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~  170 (210)
                      ...    ............+...++    ..+++++||.+|.|+.+
T Consensus       158 ~~~----~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDE----KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCH----HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccH----HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            100    000012233444444443    24788999999999853

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.52  E-value=1.5e-13  Score=103.80  Aligned_cols=109  Identities=23%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHc--CCCCCC------------------CCCceeeeeeEEEEECCEEEEEEEEeCCCcccc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS--NKFPTD------------------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY   69 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   69 (210)
                      +|+++|+.++|||||+.++..  +.....                  ...+.... ...+..++  ..+.++||||+.+|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~-~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG-VAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCE-EEEEEETT--EEEEEEECCCSGGG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEee-cccccccc--cceeEEccCchhhh
Confidence            599999999999999999963  111100                  00011111 11233445  56778999999999


Q ss_pred             cccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           70 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      .......++.+|++|+|+|+.+.-..... ..|. .+..  .++|.+++.||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~-~~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWT-VAER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHH--TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhH-HHHH-hhhh--ccccccccccccccc
Confidence            98888889999999999999877655543 3343 3333  368999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3.2e-14  Score=110.96  Aligned_cols=118  Identities=13%  Similarity=0.137  Sum_probs=80.7

Q ss_pred             CceeE-EEEECCCCCCHHHHHHHHHc--CCCCCC------CCCcee------eee---eEEEE--------------ECC
Q 028362            6 SRFIK-CVTVGDGAVGKTCMLICYTS--NKFPTD------YIPTVF------DNF---SANVV--------------AEG   53 (210)
Q Consensus         6 ~~~~k-v~llG~~~~GKStli~~l~~--~~~~~~------~~~~~~------~~~---~~~~~--------------~~~   53 (210)
                      ...+| |+|+|..++|||||+.+|..  +.....      +..+..      .+.   ...+.              .++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            44564 99999999999999999972  111100      000000      000   00111              134


Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +.+.+.++||||+.+|.......++.+|++++|+|+.+.-..+.. ..|.....   .++|+++++||+|....
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~---~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRALL  163 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHH---cCCCeEEEEECcccccc
Confidence            678899999999999999888899999999999999887666553 34433332   36899999999997544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.5e-13  Score=107.74  Aligned_cols=169  Identities=13%  Similarity=0.112  Sum_probs=91.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC-Cc--eeeeeeEEEEECCEEEEEEEEeCCCcccccc-----cCccccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI-PT--VFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYR   78 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~   78 (210)
                      ..++|+|+|.+|||||||+|+|.+........ ++  ...+...........-.+.+|||||-.....     +....+.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            46999999999999999999999754322111 11  1111111111111222467899999654321     1122355


Q ss_pred             CccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCC-CccCHHHH----HHHHHHcC
Q 028362           79 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL-VPVTTAQG----EELRKQIG  153 (210)
Q Consensus        79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~  153 (210)
                      .+|.+|++.|..-.+  .+  ..++..+..  .++|+++|.||+|.............. .....+..    ....+..+
T Consensus       135 ~~d~~l~~~~~~~~~--~d--~~l~~~l~~--~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         135 EYDFFIIISATRFKK--ND--IDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GCSEEEEEESSCCCH--HH--HHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEEecCCCCCH--HH--HHHHHHHHH--cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            678888887643221  12  344445544  368999999999975332111100000 00011111    11122222


Q ss_pred             --CcEEEEeccCC--CCCHHHHHHHHHHHHhC
Q 028362          154 --ASYYIECSSKT--QQNVKAVFDAAIKVVIK  181 (210)
Q Consensus       154 --~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~  181 (210)
                        ..+++.+|..+  ..++.++.+.+.+.+..
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence              34677788765  45899999888776654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.40  E-value=9.6e-13  Score=99.18  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc---------
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------   74 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------   74 (210)
                      ...++|+|+|.+|||||||+|.+++.....  ...+++..........++  ..+.++||||..+......         
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            467999999999999999999999865322  222333333344455566  4577899999643211111         


Q ss_pred             ccccCccEEEEEEECCChh-HH--HHHHHHHHHHHhccCCCCcEEEEeeCccccccc
Q 028362           75 LSYRGADVFVLAFSLVSRA-SY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~-s~--~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      ......++++||++++... +-  ......+...+... --.++++|+||+|.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~-~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh-hhhCEEEEEECcccCCcC
Confidence            1123467888998886532 11  11112222232211 135789999999987644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.35  E-value=4.1e-13  Score=100.04  Aligned_cols=121  Identities=15%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             EEEEEEeCCCcccccccCccc-----ccCccEEEEEEECC---ChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           56 VNLGLWDTAGQEDYNRLRPLS-----YRGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~-----~~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      ..+.+.|+||+..+.......     ....+.+++++|..   ++......  .+........-..|.++|.||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFV--RFFALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHH--HHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhH--HHHHHHHHHHhCCCceeeeeccccccH
Confidence            457789999997653221111     12355788899875   33433322  111111111136899999999998765


Q ss_pred             ccccc----------------CCCCCC-ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028362          128 KHYLA----------------DHPGLV-PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  178 (210)
Q Consensus       128 ~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  178 (210)
                      .....                ...... .............++..+++++||++|+|+++++..+.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            32000                000000 0000111111122344588999999999999999888764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.13  E-value=1.5e-11  Score=95.25  Aligned_cols=104  Identities=12%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCC
Q 028362           56 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP  135 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~  135 (210)
                      +.+.+++|.|...-...   ...-+|.+++|......+..+....-   .++     ++=++|.||.|+.+...      
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~g---ilE-----~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKG---IFE-----LADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTT---HHH-----HCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhh---Hhh-----hhheeeEeccccccchH------
Confidence            56777888875432221   33459999999999877665443111   222     23388899999876543      


Q ss_pred             CCCccCHHHHHHHHHHc---------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028362          136 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQNVKAVFDAAIKVVI  180 (210)
Q Consensus       136 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  180 (210)
                          ........+...+         ...+.+.+||+++.|++++++++.+...
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                2222222222221         2347889999999999999999976543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.7e-11  Score=93.89  Aligned_cols=104  Identities=14%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             EEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCC
Q 028362           57 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG  136 (210)
Q Consensus        57 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~  136 (210)
                      .+.+++|.|.-.-.   ..+...+|.+++|.+.......+....-.+   +     ++=++|.||.|+......      
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~---e-----~aDi~VvNKaD~~~~~~~------  210 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLM---E-----VADLIVINKDDGDNHTNV------  210 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHH---H-----HCSEEEECCCCTTCHHHH------
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhh---c-----cccEEEEEeecccchHHH------
Confidence            45566666642211   124456899999987655544433211222   1     122788899998764320      


Q ss_pred             CCccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028362          137 LVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKVV  179 (210)
Q Consensus       137 ~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~  179 (210)
                        .....+.......+      ..++.+.+||.+|.||+++++.|.+..
T Consensus       211 --~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         211 --AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             --HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence              01112222222211      124788999999999999999987644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.92  E-value=1.1e-08  Score=77.44  Aligned_cols=82  Identities=22%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeeeeEEEEECC-------------E--EEEEEEEeCCCccc--
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVVAEG-------------T--TVNLGLWDTAGQED--   68 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~--~~~~~i~D~~G~~~--   68 (210)
                      .+||.|+|.|+||||||++++.+........|  |...+... +.+.+             +  ...+.++|+||.-.  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv-v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV-VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE-EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE-EecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            37999999999999999999997654322222  22222221 22221             1  13578899999533  


Q ss_pred             --ccccCccc---ccCccEEEEEEECC
Q 028362           69 --YNRLRPLS---YRGADVFVLAFSLV   90 (210)
Q Consensus        69 --~~~~~~~~---~~~~~~~i~v~d~~   90 (210)
                        -..+...+   ++.+|+++.|+|..
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence              23455544   66899999999863

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.87  E-value=3.8e-09  Score=81.51  Aligned_cols=83  Identities=16%  Similarity=0.085  Sum_probs=45.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--eeeeeEEEE---------------------ECCEEEEEEEEeCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--FDNFSANVV---------------------AEGTTVNLGLWDTAG   65 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~---------------------~~~~~~~~~i~D~~G   65 (210)
                      ++|.|+|.|+||||||+|+|.+........|.+  .........                     .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            489999999999999999999765433222311  111111110                     012446789999999


Q ss_pred             cccc----cc---cCcccccCccEEEEEEECCC
Q 028362           66 QEDY----NR---LRPLSYRGADVFVLAFSLVS   91 (210)
Q Consensus        66 ~~~~----~~---~~~~~~~~~~~~i~v~d~~~   91 (210)
                      --..    ..   ..-..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321    11   12234678999999999863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.75  E-value=1e-07  Score=72.58  Aligned_cols=119  Identities=20%  Similarity=0.220  Sum_probs=70.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeeEEEE--------E---CC---------------------
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVV--------A---EG---------------------   53 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~--------~---~~---------------------   53 (210)
                      ...+|+|+|.-++|||||+|+|.+..+ +....|++.......+.        +   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456899999999999999999998775 44333433111000000        0   00                     


Q ss_pred             ------------------EEEEEEEEeCCCccccc-------------ccCcccccCcc-EEEEEEECCChhHHHHHHHH
Q 028362           54 ------------------TTVNLGLWDTAGQEDYN-------------RLRPLSYRGAD-VFVLAFSLVSRASYENVLKK  101 (210)
Q Consensus        54 ------------------~~~~~~i~D~~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~  101 (210)
                                        ....+.++|+||-....             .+...|+...+ ++++|.+.+........ ..
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HH
Confidence                              01237889999964321             22233445555 55567766655544443 34


Q ss_pred             HHHHHhccCCCCcEEEEeeCccccccc
Q 028362          102 WIPELQHYSPGVPVVLVGTKLDLREDK  128 (210)
Q Consensus       102 ~~~~~~~~~~~~piilv~nK~D~~~~~  128 (210)
                      +...+..  ...++++|.||+|...+.
T Consensus       184 ~~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         184 IAKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHHhCc--CCCceeeEEeccccccch
Confidence            4444432  346899999999987653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=4.8e-08  Score=74.42  Aligned_cols=85  Identities=20%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCce-eeeeeEEEEECC---------------EEEEEEEEeCCCcc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTV-FDNFSANVVAEG---------------TTVNLGLWDTAGQE   67 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~i~D~~G~~   67 (210)
                      ...+||.|+|.|+||||||+|++.+...  ..++..|+ ..... .+.+.+               ....+++.|+||..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g-~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA-KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE-EEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeE-EEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            3558999999999999999999996542  23332222 22222 122222               22467889999854


Q ss_pred             cc----cccCcc---cccCccEEEEEEECCC
Q 028362           68 DY----NRLRPL---SYRGADVFVLAFSLVS   91 (210)
Q Consensus        68 ~~----~~~~~~---~~~~~~~~i~v~d~~~   91 (210)
                      .-    ..+-..   .++.+|+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            32    222222   3678999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.61  E-value=2.6e-08  Score=76.22  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      ...+|+|+|..++|||||+|+|.+..+
T Consensus        23 ~lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            346899999999999999999998775

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=2.1e-07  Score=69.94  Aligned_cols=58  Identities=24%  Similarity=0.303  Sum_probs=35.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEeCCCc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ   66 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   66 (210)
                      ....++|+|+|.||||||||+|+|.+.+.. ....|-...... .+..+.   .+.++||||-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~-~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ-WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C-CEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce-EEECCC---CeEEecCCCc
Confidence            346799999999999999999999986532 222222211111 122221   3677999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1e-06  Score=63.86  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcC-C
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-A  154 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  154 (210)
                      ...|.|.+++|+++.+|.--....++|+-..+.  .++|.+||+||+|+.+..            ..+....+...+. .
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~------------~~~~~~~~~~~~~~~   72 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDED------------DLRKVRELEEIYSGL   72 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHH------------HHHHHHHHHHHHTTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHH------------HHHHHHHhhcccccc
Confidence            467899999999998765333334666655554  479999999999996542            2233334444332 2


Q ss_pred             cEEEEeccCCCCCHHHHHHHH
Q 028362          155 SYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                      .+.+.+|++++.|++++..++
T Consensus        73 ~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          73 YPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             SCEEECCTTTCTTHHHHHHHH
T ss_pred             eeEEEeccccchhHhhHHHHh
Confidence            367889999999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=4.5e-07  Score=65.73  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ..+++|.+|||||||+|+|....
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            56899999999999999998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=1.4e-06  Score=65.27  Aligned_cols=89  Identities=17%  Similarity=0.098  Sum_probs=60.7

Q ss_pred             ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCC
Q 028362           75 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA  154 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (210)
                      ..+..+|++|+|.|+-+|-+..+-  .+.+.+    .+.|.++|+||+|+.+..           . .+...++.+..+.
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~~----~~Kp~IlVlNK~DLv~~~-----------~-~~~w~~~f~~~~~   72 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIEDIL----KNKPRIMLLNKADKADAA-----------V-TQQWKEHFENQGI   72 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHHC----SSSCEEEEEECGGGSCHH-----------H-HHHHHHHHHTTTC
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHHHH----cCCCeEEEEECccCCchH-----------H-HHHHHHHHHhcCC
Confidence            357889999999999887655432  222222    368999999999996543           2 2223333333344


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028362          155 SYYIECSSKTQQNVKAVFDAAIKVVIKP  182 (210)
Q Consensus       155 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  182 (210)
                       ..+.+|+.++.++.++...+.+.+...
T Consensus        73 -~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          73 -RSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             -CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             -ccceeecccCCCccccchhhhhhhhhh
Confidence             677899999999988887777665543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=1.2e-06  Score=63.60  Aligned_cols=86  Identities=23%  Similarity=0.266  Sum_probs=59.5

Q ss_pred             cccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHH---HHHc
Q 028362           76 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQI  152 (210)
Q Consensus        76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  152 (210)
                      ...|.|.+++|+++.+|.--...+++++-..+.  .+++.+||+||+|+.....           ..+....+   ....
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~~~   73 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYRNI   73 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHH-----------HHHHHHHHHHHHhhc
Confidence            457899999999998875333334666655554  5789999999999976531           22223333   3344


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHH
Q 028362          153 GASYYIECSSKTQQNVKAVFDAA  175 (210)
Q Consensus       153 ~~~~~~~~Sa~~~~~i~~~~~~i  175 (210)
                      +. +.+.+|++++.|++++..++
T Consensus        74 g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          74 GY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGGG
T ss_pred             cc-cceeeecCChhHHHHHHHhh
Confidence            65 77899999999998876544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=1e-06  Score=64.02  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ..+++|.+|||||||+|+|....
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            46799999999999999999753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=6.2e-06  Score=57.19  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +||+|+|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999988853

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.2e-05  Score=58.25  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .=.+|.|.-|+|||||++++...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            34688999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.70  E-value=1.1e-05  Score=56.83  Aligned_cols=28  Identities=14%  Similarity=0.046  Sum_probs=23.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      |..+++.-|+|+|+|||||||++++|..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3455667889999999999999999975

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=8.1e-06  Score=56.69  Aligned_cols=23  Identities=13%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      =+|+|.|++|||||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.68  E-value=1.3e-05  Score=55.14  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .++..+|+|.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35678999999999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.66  E-value=9.7e-05  Score=52.62  Aligned_cols=84  Identities=21%  Similarity=0.131  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCccccccc----Cccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccc
Q 028362           56 VNLGLWDTAGQEDYNRL----RPLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH  129 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~  129 (210)
                      +.+.++||+|.......    +..+  ..+.+-.++|.|.+....-.+....+.+.+.      +-=+|++|.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcccc--
Confidence            46788999996544321    1111  2356788999998766544333233333321      12367899997543  


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 028362          130 YLADHPGLVPVTTAQGEELRKQIGASYYIEC  160 (210)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (210)
                                  .-.+...+...+. |+..+
T Consensus       165 ------------~G~~l~~~~~~~~-Pi~~i  182 (207)
T d1ls1a2         165 ------------GGAALSARHVTGK-PIYFA  182 (207)
T ss_dssp             ------------CHHHHHHHHHHCC-CEEEE
T ss_pred             ------------chHHHHHHHHHCC-CEEEE
Confidence                        2345666677776 54444

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.64  E-value=1.1e-05  Score=55.33  Aligned_cols=23  Identities=26%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+|+|.|++||||||++++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998874

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.64  E-value=1.6e-05  Score=56.06  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=24.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +.+.+||+|+|+|||||||+...|...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            457799999999999999999998853

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.57  E-value=2.2e-05  Score=55.16  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=21.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +-+||+|+|+|||||||+++.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999999998874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.55  E-value=1.6e-05  Score=55.89  Aligned_cols=24  Identities=21%  Similarity=0.146  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+++|+|.|++|+||||+++.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.5e-05  Score=54.28  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      +||+|+|+|||||||+++.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=3e-05  Score=53.93  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +||+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998743

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=3.2e-05  Score=52.84  Aligned_cols=21  Identities=19%  Similarity=0.068  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      =++|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999985

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.45  E-value=3.4e-05  Score=51.83  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|.|+|||||||++++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998753

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.44  E-value=3.7e-05  Score=53.53  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|+|+|||||||+++.|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=4.1e-05  Score=53.27  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+||+|+|+|||||||+++.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4.1e-05  Score=53.15  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      +||+|+|+|||||||++++|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999988874

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.35  E-value=5.1e-05  Score=51.82  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|.|++||||||++++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=6.4e-05  Score=50.73  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .|+|+|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.5e-05  Score=52.36  Aligned_cols=23  Identities=13%  Similarity=0.105  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++.|+|+|+|||||||++++|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=5.6e-05  Score=51.76  Aligned_cols=22  Identities=27%  Similarity=0.185  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .||+++|.+||||||+.+.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=9.4e-05  Score=52.32  Aligned_cols=22  Identities=36%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .=|+++|.|||||||+.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999884

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.14  E-value=0.00011  Score=50.01  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00012  Score=51.11  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.00013  Score=49.88  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             EE-EEECCCCCCHHHHHHHHHc
Q 028362           10 KC-VTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv-~llG~~~~GKStli~~l~~   30 (210)
                      || .|+|.+|||||||++++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999999874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.00019  Score=50.40  Aligned_cols=26  Identities=12%  Similarity=0.075  Sum_probs=22.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.+.--|+|+|+|||||||++..|..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44556789999999999999998875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.11  E-value=0.00013  Score=50.23  Aligned_cols=20  Identities=25%  Similarity=0.150  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|.|++||||||++++|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998864

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00013  Score=50.63  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999999754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00014  Score=49.96  Aligned_cols=20  Identities=25%  Similarity=0.317  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|.|++|+|||||+..+..
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998884

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.0002  Score=49.41  Aligned_cols=26  Identities=19%  Similarity=0.103  Sum_probs=21.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .++.-=|+++|.+||||||+++++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556789999999999999999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00015  Score=50.50  Aligned_cols=27  Identities=15%  Similarity=0.023  Sum_probs=22.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .....+=|.|-|++|||||||+++|..
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            344556688999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00025  Score=52.74  Aligned_cols=62  Identities=21%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC--CCCC---CCCceeeeeeEEEEECCEEEEEEEEeCCCccc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK--FPTD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQED   68 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   68 (210)
                      +..=|.++|+.++|||+|+|.|.+..  |...   ...|.+.-....-..++....+.++|+.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            34467899999999999999999755  2211   12233333322222344556778899999754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00016  Score=50.23  Aligned_cols=20  Identities=20%  Similarity=0.285  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|+|++||||+||+++|..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00016  Score=49.25  Aligned_cols=22  Identities=18%  Similarity=0.185  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      =++|.|++||||||+.+.|...
T Consensus         8 iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3567999999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.06  E-value=0.00022  Score=48.73  Aligned_cols=25  Identities=12%  Similarity=0.060  Sum_probs=20.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+-.-|.|.|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446788999999999999988874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.0002  Score=50.18  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00021  Score=50.74  Aligned_cols=21  Identities=10%  Similarity=0.276  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|+||+|||||||+++|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            679999999999999999853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.97  E-value=0.00022  Score=48.88  Aligned_cols=20  Identities=20%  Similarity=0.119  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|+|++||||||+.+.|..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.97  E-value=0.00021  Score=48.85  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999888753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.92  E-value=0.00026  Score=48.30  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|.|++|+||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455699999999999988854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.91  E-value=0.00028  Score=50.33  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.++|+|-|++||||||+...|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998884

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00026  Score=51.57  Aligned_cols=22  Identities=18%  Similarity=0.117  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      +++|+|++|+|||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999777653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0028  Score=45.65  Aligned_cols=24  Identities=13%  Similarity=0.192  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ...+++.|++|+||||+++.+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.00026  Score=49.53  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +..++++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45677889999999999999999988753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00032  Score=50.64  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            3689999999999999877653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.83  E-value=0.00031  Score=49.70  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            36899999999999998887543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.81  E-value=0.00034  Score=50.92  Aligned_cols=21  Identities=14%  Similarity=0.161  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus        30 ~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999977764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.80  E-value=0.00013  Score=51.29  Aligned_cols=23  Identities=17%  Similarity=0.050  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|+|+|||||||++.+|...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34789999999999999999753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.78  E-value=0.00038  Score=50.47  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++++|+.|+|||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5789999999999998877643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00038  Score=50.99  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6799999999999999776643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.00035  Score=50.39  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|+|++|+|||||++-+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCcchhhHhccC
Confidence            358999999999999985554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00046  Score=48.37  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-+++++|+||||||+++..|..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHH
Confidence            34789999999999999987774

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.74  E-value=0.00036  Score=48.15  Aligned_cols=21  Identities=29%  Similarity=0.254  Sum_probs=17.6

Q ss_pred             EEE-EECCCCCCHHHHHHHHHc
Q 028362           10 KCV-TVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~-llG~~~~GKStli~~l~~   30 (210)
                      ||+ |.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 579999999999998863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.74  E-value=0.00036  Score=51.18  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++|+|++|+|||||++.+.+
T Consensus        43 ~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            689999999999999977764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.72  E-value=0.00045  Score=50.57  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|.|+||+|||||++.+...
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999988764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00018  Score=50.08  Aligned_cols=23  Identities=17%  Similarity=0.117  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      -.-|+|.|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999998874

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.70  E-value=0.00047  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.230  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -++|+|++|+|||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3689999999999999877754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.00079  Score=47.91  Aligned_cols=27  Identities=19%  Similarity=0.067  Sum_probs=22.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHH
Q 028362            3 SSASRFIKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         3 ~~~~~~~kv~llG~~~~GKStli~~l~   29 (210)
                      ..+.++.-|+++|++||||||.+-+|.
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            345677888999999999999877766

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00045  Score=49.87  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      .-.+++.|+||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.00049  Score=51.23  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999888753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0006  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      =+++++|++|||||++++.|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            4789999999999999998774

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.62  E-value=0.00057  Score=49.58  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -+.|+|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4689999999999999877754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.59  E-value=0.00035  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|++|+|||||++.+.+-.
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCc
Confidence            6899999999999998888643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00061  Score=49.09  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..+++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            35899999999999999988754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00078  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++-|.|-|++|||||||.++|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.55  E-value=0.0006  Score=49.53  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|+|+.|+|||||++.+.+-.
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            5799999999999998887643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00052  Score=49.78  Aligned_cols=21  Identities=19%  Similarity=0.434  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -+.|+|++|+|||||++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            358999999999999977765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00047  Score=49.82  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      +.|+|+.|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            68999999999999998886

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.45  E-value=0.00043  Score=50.77  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +++|+|++|+|||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            679999999999999965543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.00079  Score=48.80  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      +.|+|+.|+|||||++.+.+-.
T Consensus        31 ~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999998877654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.39  E-value=0.0009  Score=50.44  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.++++||||||||.|++.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            45899999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.37  E-value=0.00092  Score=49.04  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -+.|+|++|+|||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            468999999999999988764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.34  E-value=0.001  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|.|++|+||||+++.+...
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999988753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0014  Score=45.41  Aligned_cols=26  Identities=19%  Similarity=0.050  Sum_probs=22.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      .++=|.|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            45778899999999999999887543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.33  E-value=0.00096  Score=48.85  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      +.|+|+.|+|||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            5899999999999998887653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0017  Score=46.04  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=21.2

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHH
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~   29 (210)
                      +.+.+.-|+++|++||||||.+-+|.
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34455668899999999999998886

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0011  Score=46.96  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      =|+|.|+|||||||+...|...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3577799999999999888843

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.31  E-value=0.0016  Score=47.42  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +.-.|++.|+||+|||++++.+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            3456999999999999999988753

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.29  E-value=0.0005  Score=49.89  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|+|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4689999999999999888764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.28  E-value=0.0012  Score=48.12  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-.++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0011  Score=47.97  Aligned_cols=23  Identities=17%  Similarity=0.170  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --++|.|++|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988864

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.22  E-value=0.0013  Score=46.10  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999987774

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.21  E-value=0.0012  Score=46.70  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .++..-|.|.|.||+|||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999998874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.0011  Score=50.38  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      +|+|.|++|+||||+++.+....
T Consensus       168 nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEeeccccchHHHHHHhhhc
Confidence            58999999999999999998654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.12  E-value=0.0021  Score=46.98  Aligned_cols=20  Identities=20%  Similarity=0.283  Sum_probs=16.9

Q ss_pred             EEECCCCCCHHHHHHHHHcC
Q 028362           12 VTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~~~   31 (210)
                      ++.|+||+|||++++.+...
T Consensus        50 ~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHH
Confidence            45699999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.08  E-value=0.0014  Score=47.72  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -++|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            467889999999999998874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.03  E-value=0.0022  Score=45.50  Aligned_cols=92  Identities=16%  Similarity=0.054  Sum_probs=51.2

Q ss_pred             EEEEEEeCCCcccccc--c----Cccc--ccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccc
Q 028362           56 VNLGLWDTAGQEDYNR--L----RPLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED  127 (210)
Q Consensus        56 ~~~~i~D~~G~~~~~~--~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~  127 (210)
                      +.+.++||+|...+..  .    ...+  .-..+-.++|.|++....-.+....   .+...  + +--+|+||.|... 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~---~~~~~--~-~~~lI~TKlDet~-  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK---FNQAS--K-IGTIIITKMDGTA-  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH---HHHHC--T-TEEEEEECTTSCS-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhh---hhccc--C-cceEEEecccCCC-
Confidence            5678899999644331  1    0111  1135678889888765433222122   22211  1 2246689999964 


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 028362          128 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA  170 (210)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  170 (210)
                                   ..-.+...+...+. |+..++  +|+++++
T Consensus       168 -------------~~G~~l~~~~~~~l-Pi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 -------------KGGGALSAVAATGA-TIKFIG--TGEKIDE  194 (211)
T ss_dssp             -------------CHHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             -------------cccHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence                         34456677777776 554454  4666654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.99  E-value=0.0019  Score=45.65  Aligned_cols=92  Identities=15%  Similarity=0.047  Sum_probs=49.9

Q ss_pred             EEEEEEEeCCCccccccc----Cccc---c-----cCccEEEEEEECCChh-HHHHHHHHHHHHHhccCCCCcEEEEeeC
Q 028362           55 TVNLGLWDTAGQEDYNRL----RPLS---Y-----RGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTK  121 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~----~~~~---~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK  121 (210)
                      .+.+.++||+|...+...    +..+   .     ...+-.++|.|.+... ....+ ......+.      +--+|+||
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~~------~~~lI~TK  160 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAVG------LTGVIVTK  160 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHHC------CSEEEEEC
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhccC------CceEEEec
Confidence            356788999996544321    0111   1     1346788899987554 33333 33333332      22467899


Q ss_pred             cccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 028362          122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA  170 (210)
Q Consensus       122 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  170 (210)
                      .|....-.              .+...+...+. |+..++  +|+++++
T Consensus       161 lDet~~~G--------------~~l~~~~~~~~-Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         161 LDGTAKGG--------------VLIPIVRTLKV-PIKFVG--VGEGPDD  192 (207)
T ss_dssp             TTSSCCCT--------------THHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred             cCCCCCcc--------------HHHHHHHHHCC-CEEEEe--CCCChHh
Confidence            99865432              34455666665 544443  3555544

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0022  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999987764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0022  Score=46.62  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -+++.|++|+|||++++.+...
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5899999999999999999854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0023  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .++|.|++|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999888753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0032  Score=47.24  Aligned_cols=27  Identities=19%  Similarity=0.073  Sum_probs=22.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHc
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+.++=|.|.|++||||||+.+.|..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            345678899999999999999988874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.0023  Score=45.08  Aligned_cols=20  Identities=25%  Similarity=0.126  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|-|.+||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998774

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.79  E-value=0.0022  Score=50.72  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      +|+++||+|||||-|+++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0028  Score=45.05  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .+++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999988754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.003  Score=46.15  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .+++.|+||+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            489999999999999998885

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.0019  Score=50.10  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=17.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      =+++++|+||||||+++..|.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            467999999999999986555

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.68  E-value=0.0031  Score=46.05  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      -.+++.|+||+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35899999999999999988864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.0062  Score=40.93  Aligned_cols=24  Identities=25%  Similarity=0.158  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..-|++-|+=|+|||||++.+..+
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345888999999999999988854

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0034  Score=44.32  Aligned_cols=20  Identities=20%  Similarity=0.087  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      |+|-|.+||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998887764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0024  Score=45.72  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999887753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.48  E-value=0.0048  Score=46.80  Aligned_cols=27  Identities=15%  Similarity=0.095  Sum_probs=23.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            5 ASRFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         5 ~~~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ....++|.|=|..|+||||+++.|...
T Consensus         3 ~~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           3 MVTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CCceEEEEEECCccCCHHHHHHHHHHH
Confidence            346799999999999999999988864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0054  Score=43.11  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      +=|.|.|..||||||+++.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            3478999999999999998875443

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.35  E-value=0.0061  Score=41.76  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999887653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.32  E-value=0.0046  Score=45.63  Aligned_cols=23  Identities=17%  Similarity=0.107  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      --|+|.|.+|+|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.24  E-value=0.0045  Score=45.38  Aligned_cols=24  Identities=17%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      -.|++.|++|+|||+|++.+....
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            358999999999999999987543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.23  E-value=0.009  Score=41.82  Aligned_cols=23  Identities=22%  Similarity=0.121  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~   31 (210)
                      +=|.|.|..||||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            55889999999999999988643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0088  Score=44.26  Aligned_cols=26  Identities=15%  Similarity=0.011  Sum_probs=21.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHH
Q 028362            4 SASRFIKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         4 ~~~~~~kv~llG~~~~GKStli~~l~   29 (210)
                      ..++++=|.|-|.+|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567888999999999999998664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.19  E-value=0.0027  Score=48.11  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .|++.|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998863

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0062  Score=42.35  Aligned_cols=23  Identities=17%  Similarity=0.053  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~~   33 (210)
                      +.|.|++|+|||+|+..+..+..
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999886543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.14  E-value=0.0067  Score=41.56  Aligned_cols=25  Identities=12%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      .-|++.|++|+||||+.-.|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3578999999999999999987553

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0062  Score=43.56  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999999853

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.011  Score=44.30  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      .++++|++|||||.|++.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            688999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.89  E-value=0.0066  Score=46.61  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ..-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            345699999999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.83  E-value=0.0074  Score=46.28  Aligned_cols=22  Identities=18%  Similarity=0.070  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      --+++.||||+|||+++..+..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0014  Score=45.30  Aligned_cols=18  Identities=17%  Similarity=0.431  Sum_probs=16.4

Q ss_pred             EEECCCCCCHHHHHHHHH
Q 028362           12 VTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~   29 (210)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999886

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.77  E-value=0.0093  Score=45.03  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~   31 (210)
                      ..++|.|=|..||||||+++.|...
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             CceEEEEECCcCCCHHHHHHHHHHH
Confidence            5688999999999999999988743

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.75  E-value=0.0063  Score=46.07  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=23.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCC
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~~~   32 (210)
                      ...++|+|=|..|+||||+++.|....
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999998653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.68  E-value=0.0099  Score=40.39  Aligned_cols=25  Identities=16%  Similarity=0.313  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Q 028362            9 IKCVTVGDGAVGKTCMLICYTSNKF   33 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~~~~   33 (210)
                      .-|++.|++|+||||+.-.+....+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999988886653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.67  E-value=0.0082  Score=42.97  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|.|+||+|||+|.-.+..+.
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6899999999999999888544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.0085  Score=42.32  Aligned_cols=21  Identities=19%  Similarity=0.077  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      |+|=|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999888743

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.65  E-value=0.0082  Score=42.66  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      +.|.|+||+|||+|+-.+..+.
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999999988654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.0061  Score=45.21  Aligned_cols=18  Identities=22%  Similarity=0.364  Sum_probs=16.4

Q ss_pred             EEECCCCCCHHHHHHHHH
Q 028362           12 VTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~   29 (210)
                      +|+|+.|+||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999999874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.51  E-value=0.0052  Score=45.51  Aligned_cols=21  Identities=10%  Similarity=0.175  Sum_probs=15.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHH
Q 028362            9 IKCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~   29 (210)
                      .=|.|.|.+||||||+.++|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            349999999999999999775

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.34  E-value=0.012  Score=41.53  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      +.|.|++|+|||.|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.29  E-value=0.012  Score=42.00  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      -++|.|+||+|||+|+..+..+.
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36789999999999999888653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.018  Score=40.33  Aligned_cols=22  Identities=5%  Similarity=0.119  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      -+++.|++|+||||++..+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4899999999999999977753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.92  E-value=0.016  Score=43.52  Aligned_cols=20  Identities=25%  Similarity=0.441  Sum_probs=17.0

Q ss_pred             EEECCCCCCHHHHHHHHHcC
Q 028362           12 VTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~~~   31 (210)
                      ++.|+||+|||.|.+.+...
T Consensus       127 l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         127 IVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEECSSSSCHHHHHHHHHHH
T ss_pred             EEECCCCccHHHHHHHHHHH
Confidence            44699999999999988853

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.90  E-value=0.015  Score=41.23  Aligned_cols=22  Identities=23%  Similarity=0.039  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      ++|.|++|+|||+|+..+..+.
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5789999999999999998554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.016  Score=44.71  Aligned_cols=18  Identities=22%  Similarity=0.398  Sum_probs=16.3

Q ss_pred             EEECCCCCCHHHHHHHHH
Q 028362           12 VTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        12 ~llG~~~~GKStli~~l~   29 (210)
                      +|+|+.|+|||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            588999999999999874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.02  Score=40.98  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999987764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.021  Score=40.72  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      =++|.|++|+|||+|.-.+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.56  E-value=0.02  Score=44.46  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHHcCC
Q 028362           11 CVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~~   32 (210)
                      |+|.|+.|+||||.+..+....
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhhh
Confidence            7899999999999999998643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.20  E-value=0.023  Score=39.88  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=16.9

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~   29 (210)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35788999999999987665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.16  E-value=0.021  Score=39.74  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      +.--+++.|++++|||+|+..+..
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHH
Confidence            335689999999999999988774

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.10  E-value=0.029  Score=39.88  Aligned_cols=21  Identities=19%  Similarity=-0.007  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      -|.|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.98  E-value=0.03  Score=40.72  Aligned_cols=21  Identities=10%  Similarity=0.167  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|.|.||+|||+|+..+..+
T Consensus        38 ~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHh
Confidence            579999999999998877743

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.75  E-value=0.022  Score=41.82  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHH-HHH
Q 028362           11 CVTVGDGAVGKTCM-LIC   27 (210)
Q Consensus        11 v~llG~~~~GKStl-i~~   27 (210)
                      ++|+|.+|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            67899999999965 444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.50  E-value=0.054  Score=40.47  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=19.7

Q ss_pred             Ccee-EEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFI-KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~-kv~llG~~~~GKStli~~l~~   30 (210)
                      .++. -++++|++|+|||.+.+.+..
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHH
Confidence            3444 567889999999999997774

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.24  E-value=0.056  Score=34.23  Aligned_cols=25  Identities=16%  Similarity=0.034  Sum_probs=22.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      ++=+.|.+-|..|+|||||.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            4568999999999999999999874

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.08  E-value=0.031  Score=41.40  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=12.9

Q ss_pred             EEEECCCCCCHHHHH
Q 028362           11 CVTVGDGAVGKTCML   25 (210)
Q Consensus        11 v~llG~~~~GKStli   25 (210)
                      ++|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.047  Score=40.21  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.91  E-value=0.043  Score=39.70  Aligned_cols=19  Identities=21%  Similarity=0.354  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q 028362           11 CVTVGDGAVGKTCMLICYT   29 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~   29 (210)
                      .+|.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4689999999999998765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.55  E-value=0.058  Score=39.28  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHHc
Q 028362            6 SRFIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         6 ~~~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .+.--+++.|+++.|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4456788999999999999998874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.048  Score=42.24  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|.+|+|||+++..+...
T Consensus        53 ~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999998776643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.061  Score=40.94  Aligned_cols=19  Identities=26%  Similarity=0.261  Sum_probs=15.7

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q 028362           10 KCVTVGDGAVGKTCMLICY   28 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l   28 (210)
                      -++|.|++|+||||++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3678999999999988654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.43  E-value=0.22  Score=33.60  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=58.8

Q ss_pred             CCCceeEEEEECC-CCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc-------------
Q 028362            4 SASRFIKCVTVGD-GAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------------   69 (210)
Q Consensus         4 ~~~~~~kv~llG~-~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------   69 (210)
                      +.++.+||+|+|- .++|-|.+. .|..+.....                +..+.+.+.|.+.....             
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~l~~-~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~   82 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNHLLF-KLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLY   82 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHHHHH-HHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTC
T ss_pred             ccCCCcEEEEECCCcHHHHHHHH-HHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhccccc
Confidence            3457899999995 778866555 5555442211                12245555666542110             


Q ss_pred             --------cccCcccccCccEEEEEEECCCh-----hHH----HHHHHHHHHHHhccCC-CCcEEEEeeCccc
Q 028362           70 --------NRLRPLSYRGADVFVLAFSLVSR-----ASY----ENVLKKWIPELQHYSP-GVPVVLVGTKLDL  124 (210)
Q Consensus        70 --------~~~~~~~~~~~~~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~-~~piilv~nK~D~  124 (210)
                              .......+.++|++|++-.....     ..+    ..+...+.+.+..+.+ +..+++|+|=.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          83 PLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             TTEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                    01112336788988888765422     222    1224566677777664 6667788886664

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.96  E-value=0.089  Score=37.90  Aligned_cols=70  Identities=11%  Similarity=0.130  Sum_probs=38.5

Q ss_pred             EEEEEEEeCCCcccccccCc-ccccCccEEEEEEECCChhHHHHHHHHHHHHHhccC--CCCcE-EEEeeCccccc
Q 028362           55 TVNLGLWDTAGQEDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPV-VLVGTKLDLRE  126 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi-ilv~nK~D~~~  126 (210)
                      .+.+.++|+|+......... .....+|.++++.+. +..++... ......+....  .+.++ -+|.|+.+...
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCC
Confidence            36678899987543222111 122457877777765 56666655 34444444332  23333 36778877643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.71  E-value=0.1  Score=37.41  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHHc
Q 028362            9 IKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         9 ~kv~llG~~~~GKStli~~l~~   30 (210)
                      .-|+|.|++|+||+.+.+.+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3489999999999999988764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.96  E-value=0.094  Score=38.27  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      |+.|+|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.16  Score=36.67  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      +.|.|++++|||||+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            468999999999999877754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.84  E-value=0.12  Score=37.60  Aligned_cols=68  Identities=12%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             EEEEEEEeCCCcccccccCccc-ccCccEEEEEEECCChhHHHHHHHHHHHHHhcc--CCCCcEE-EEeeCccc
Q 028362           55 TVNLGLWDTAGQEDYNRLRPLS-YRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVV-LVGTKLDL  124 (210)
Q Consensus        55 ~~~~~i~D~~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pii-lv~nK~D~  124 (210)
                      .+.+.++|+|+.-......... ...++.++++.. .+..++..+ ......+...  ..+.++. +|.|+.+.
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~  189 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNT  189 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcc
Confidence            3667889988754322222211 124566665544 455555554 3444433322  2345553 77888764

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.17  Score=36.44  Aligned_cols=20  Identities=35%  Similarity=0.503  Sum_probs=14.5

Q ss_pred             eEEE-EECCCCCCHHHHHHHH
Q 028362            9 IKCV-TVGDGAVGKTCMLICY   28 (210)
Q Consensus         9 ~kv~-llG~~~~GKStli~~l   28 (210)
                      -||+ +-|..||||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            3454 5599999999975544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.51  E-value=0.18  Score=34.66  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=16.8

Q ss_pred             EEEEECCC-CCCHHHHHHHHH
Q 028362           10 KCVTVGDG-AVGKTCMLICYT   29 (210)
Q Consensus        10 kv~llG~~-~~GKStli~~l~   29 (210)
                      |+.|.|.. ||||||+.--|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            68899996 999999887555

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.22  Score=35.29  Aligned_cols=20  Identities=15%  Similarity=0.144  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      ++|-|+..+||||+++.+..
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68899999999999997763

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.52  E-value=0.22  Score=35.03  Aligned_cols=20  Identities=20%  Similarity=0.253  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      ++|.|+..+||||+++.+..
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            68999999999999997763

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.30  E-value=0.3  Score=32.08  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             CceeEEEEEC-CCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccc---------------
Q 028362            6 SRFIKCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------------   69 (210)
Q Consensus         6 ~~~~kv~llG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------   69 (210)
                      +.++||+|+| ..++|.+... .+..+.....                .....+.++|..+....               
T Consensus         1 s~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLY-SIGNGSVFGK----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHH-HHHTTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CCceEEEEECCCCHHHHHHHH-HHHHHHhcCC----------------CCccEEEEecCccchhhhhhhhhhhccccccc
Confidence            3578999999 5889988666 4554432211                12234555665532110               


Q ss_pred             ------cccCcccccCccEEEEEEECCCh------hHHH---HHHHHHHHHHhccCCCCc-EEEEeeCccc
Q 028362           70 ------NRLRPLSYRGADVFVLAFSLVSR------ASYE---NVLKKWIPELQHYSPGVP-VVLVGTKLDL  124 (210)
Q Consensus        70 ------~~~~~~~~~~~~~~i~v~d~~~~------~s~~---~~~~~~~~~~~~~~~~~p-iilv~nK~D~  124 (210)
                            .......+.++|++|+.-.....      +.+.   .+...+...+..+.++.. ++++.|-.|.
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence                  00112346677877776544221      1122   223555666666665554 5566777764

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.16  Score=37.56  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=13.0

Q ss_pred             EEECCCCCCHHHHH
Q 028362           12 VTVGDGAVGKTCML   25 (210)
Q Consensus        12 ~llG~~~~GKStli   25 (210)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999976

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.54  E-value=0.27  Score=35.46  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=23.0

Q ss_pred             EEEEEEECCChhHHHHHHHHHHHHHhccCCCCcE-EEEeeCc
Q 028362           82 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKL  122 (210)
Q Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~  122 (210)
                      .+++|-.. ++-+..+. ...++.+...  ++|+ -+|+|+.
T Consensus       200 ~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             eeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            56666544 45667666 6666776664  3554 4677986

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=84.78  E-value=0.18  Score=37.46  Aligned_cols=16  Identities=31%  Similarity=0.360  Sum_probs=13.9

Q ss_pred             EEEECCCCCCHHHHHH
Q 028362           11 CVTVGDGAVGKTCMLI   26 (210)
Q Consensus        11 v~llG~~~~GKStli~   26 (210)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4899999999999763

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=84.77  E-value=1.8  Score=28.63  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             CCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE
Q 028362           89 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE  159 (210)
Q Consensus        89 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (210)
                      .+|+.+++...+...+.+..  .+.|+|++|.......              ..+++.++++..++ |++.
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~--AkrPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~t   55 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIAN--RDKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVAT   55 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT--CSCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEE
T ss_pred             CCChHHHHHHHHHHHHHHHc--CCCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEe
Confidence            36778888777777777765  5789999998876643              56789999999998 5553

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.63  E-value=0.21  Score=37.13  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHHH
Q 028362           11 CVTVGDGAVGKTCML   25 (210)
Q Consensus        11 v~llG~~~~GKStli   25 (210)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999998

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.29  E-value=0.37  Score=33.07  Aligned_cols=103  Identities=15%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC--CCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcccccccCc----ccccCc
Q 028362            7 RFIKCVTVGDGAVGKTCMLICYTSN--KFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP----LSYRGA   80 (210)
Q Consensus         7 ~~~kv~llG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~----~~~~~~   80 (210)
                      ....+++-|++|+|||+++..+...  .+...+.    +.+.  +..++..+        |-+..+.+..    ..+.+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~----D~~~--i~~~~~~I--------~Id~IR~i~~~~~~~~~~~~   79 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKAS----DVLE--IDPEGENI--------GIDDIRTIKDFLNYSPELYT   79 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTT----TEEE--ECCSSSCB--------CHHHHHHHHHHHTSCCSSSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCC----CEEE--EeCCcCCC--------CHHHHHHHHHHHhhCcccCC
Confidence            4578999999999999999988752  2212111    1000  00111111        1122221111    111222


Q ss_pred             cEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEEEEeeCcccc
Q 028362           81 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR  125 (210)
Q Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D~~  125 (210)
                      .-++++ |-.+.-+-... ..++..++....+.-++++.+..+..
T Consensus        80 ~KviII-d~ad~l~~~aq-NaLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          80 RKYVIV-HDCERMTQQAA-NAFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             SEEEEE-TTGGGBCHHHH-HHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CEEEEE-eCccccchhhh-hHHHHHHhCCCCCceeeeccCChhhC
Confidence            234444 43333333333 67888888876677777877766643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=83.11  E-value=0.28  Score=31.08  Aligned_cols=21  Identities=10%  Similarity=-0.032  Sum_probs=16.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHc
Q 028362           10 KCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~   30 (210)
                      ..+|.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457899999999988865543

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.95  E-value=0.26  Score=35.98  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHcC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~   31 (210)
                      |+.|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998766643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.90  E-value=0.25  Score=33.51  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      ++|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998744

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.88  E-value=1.8  Score=29.69  Aligned_cols=23  Identities=26%  Similarity=0.190  Sum_probs=19.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Q 028362            8 FIKCVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus         8 ~~kv~llG~~~~GKStli~~l~~   30 (210)
                      .--++++|++||||||.+-+|..
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34578999999999999887764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.09  E-value=2  Score=29.34  Aligned_cols=68  Identities=10%  Similarity=0.087  Sum_probs=45.4

Q ss_pred             EEEEEEEEeCCCcccccccCcccccCccEEEEEEECCChhHHHHHHHHHHHHHhccCCCCcEE-EEeeCcccccc
Q 028362           54 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLRED  127 (210)
Q Consensus        54 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~  127 (210)
                      ..+.+.++|+++.....  ....+..+|.++++... +..++..+ ..+...++.  .++|++ +|.|+.+....
T Consensus       110 ~~~d~IiiD~~~~~~~~--~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~--~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         110 DKFDFILIDCPAGLQLD--AMSAMLSGEEALLVTNP-EISCLTDT-MKVGIVLKK--AGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             GGCSEEEEECCSSSSHH--HHHHHTTCSEEEEEECS-CHHHHHHH-HHHHHHHHH--TTCEEEEEEEEEETSCTT
T ss_pred             hcCCEEEEccccccccc--chhhhhhhhcccccccc-cceecchh-hHHHHHHhh--hhhhhhhhhhcccccccc
Confidence            34678899999864322  22345679999998876 46666665 555666654  457766 88999876543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.97  E-value=0.83  Score=29.77  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccccCccEEEEEEECCCh-----hHHH----HHHHHHHHHHhccCC-CCcEEEEeeCccc
Q 028362           75 LSYRGADVFVLAFSLVSR-----ASYE----NVLKKWIPELQHYSP-GVPVVLVGTKLDL  124 (210)
Q Consensus        75 ~~~~~~~~~i~v~d~~~~-----~s~~----~~~~~~~~~~~~~~~-~~piilv~nK~D~  124 (210)
                      ..++++|++++.-.....     ..+.    .+...+...+..+.+ +.-+++|.|-.|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            357889998887765422     1111    223556666766654 5556677777775

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.67  E-value=0.33  Score=35.26  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Q 028362           10 KCVTVGDGAVGKTCMLICYTSNK   32 (210)
Q Consensus        10 kv~llG~~~~GKStli~~l~~~~   32 (210)
                      |+.|+|.+|+|||+|+..+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eEeeccCCCCChHHHHHHHHhhh
Confidence            67899999999999997765443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.52  E-value=0.49  Score=34.19  Aligned_cols=20  Identities=20%  Similarity=0.220  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHHc
Q 028362           11 CVTVGDGAVGKTCMLICYTS   30 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~   30 (210)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46899999999999876664

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.63  E-value=0.48  Score=34.21  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHcC
Q 028362           11 CVTVGDGAVGKTCMLICYTSN   31 (210)
Q Consensus        11 v~llG~~~~GKStli~~l~~~   31 (210)
                      +.+.|++++|||+|+-.+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            358899999999999877754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.18  E-value=2.7  Score=26.91  Aligned_cols=93  Identities=16%  Similarity=0.332  Sum_probs=54.0

Q ss_pred             EEEEEC-CCCCCHHHHHHHHHcCCCCCCCCCceeeeeeEEEEECCEEEEEEEEeCCCcc----------cc--------c
Q 028362           10 KCVTVG-DGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DY--------N   70 (210)
Q Consensus        10 kv~llG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~--------~   70 (210)
                      ||+|+| ...+| +++...+....+..                     .+.++|+....          .+        .
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~~~---------------------elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~   59 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPLVS---------------------RLTLYDIAHTPGVAADLSHIETRATVKGYLGP   59 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTTCS---------------------EEEEEESSSHHHHHHHHTTSSSSCEEEEEESG
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCccc---------------------eEEEEeccccchhhHHHhhhhhhcCCCeEEcC
Confidence            899999 58999 66676777655421                     13334443200          00        0


Q ss_pred             ccCcccccCccEEEEEEECCC-----hh-HH---HHHHHHHHHHHhccCCCCcEEEEeeCccc
Q 028362           71 RLRPLSYRGADVFVLAFSLVS-----RA-SY---ENVLKKWIPELQHYSPGVPVVLVGTKLDL  124 (210)
Q Consensus        71 ~~~~~~~~~~~~~i~v~d~~~-----~~-s~---~~~~~~~~~~~~~~~~~~piilv~nK~D~  124 (210)
                      ..+...++++|++++..-...     +. .+   ..+.+.+.+.+..+.++.-+++|.|=.|.
T Consensus        60 ~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            111234678998888755421     11 11   22245667777777788888888887774