Citrus Sinensis ID: 028368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Secondary Structure (PSIPRED)
ccccccEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccccEEEEccccccccccEEEEEEEccccEEEEcEEEEEEEEcccccccccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccccHHHHHHHHHHcccccccHHccccccccHHHHccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEccccccccccEEEEEEccccccEEccEEEEEEEEEEccccccccEEEEEcccccccccccEEEEEEEccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MMLTGMVFlswgrptpqeqkacidksgvfnydtkykgatakpvaclkedqglskdgflLNHARVLVGSGLETYEKGKTALKTWRHfglnwafvdpktpiqngvKFCVCVkeflpwvtlpLQIVYVNESIrkkktaasfgfgsgtlqghllageerfsielddnnqVWYEIVSFskpadflsfigypyVQLRQKYFAHQSVNAVKKHLTAS
Flexible Loop (DISEMBL)
MMLTGMVFlswgrptpqEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Low Complexity Region (SEG)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered region (IsUnstruct)
****GMVFLSWGRP****QKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNA********
Disordered Region (DISOPRED)
****GMVFLSWGRPTPQ*********GVFNYDTKYKGATAKPVA****DQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKH****
Disordered Region (DISEMBL)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Disordered Region (DISPRO)
*MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
Q8GXB1	205	UPF0548 protein At2g17695	yes	no	0.976	1.0	0.678	1e-84
Q86JL6	216	UPF0548 protein OS=Dictyo	yes	no	0.728	0.708	0.327	1e-17
Q9RST8	198	UPF0548 protein DR_2035 O	yes	no	0.7	0.742	0.311	2e-11

>sp|Q8GXB1|U548_ARATH UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1

 Score =  312 bits (799), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           +ES + +K  A FG+GSGTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYV+LRQK+FA  S  AV KH+ AS
Sbjct: 181 PYVKLRQKHFARHSSEAVLKHVNAS 205

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JL6|U548_DICDI UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 9/162 (5%)

Query: 57  FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
           F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct: 50  FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query: 116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIE-------LDDNNQVWY 168
           +    +I Y+ +   ++  +  FG+  GTL+ H+  GEERF IE         D   V+Y
Sbjct: 110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYY 168

Query: 169 EIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 210
           E++SFS+P+ +LS +GYP  +  Q  F   S N + K + ++
Sbjct: 169 EMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLKAVGSN 210

Dictyostelium discoideum (taxid: 44689)

>sp|Q9RST8|Y2035_DEIRA UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 51  GLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV---DPKTPI-QNGVKFC 106
           G + D       RV VG G   +E+ K AL+  + F  +W      +  TP+ + G    
Sbjct: 35  GRTPDWARSGRHRVRVGEGEACWERAKAALRGGQMF-QDWVLRPHGEASTPLSRQGATVV 93

Query: 107 VCVKEFLPW--VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN 164
           + V+ F PW      L  +  N  +        +GFG GTL GHL+ GEERF +E D   
Sbjct: 94  LLVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGG 153

Query: 165 QVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQ 198
            VW+++ +FS+ A   S    P V   Q+  A  
Sbjct: 154 AVWFDLTTFSRAALPFSRFAQPLVGAAQRRGARH 187

Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) (taxid: 243230)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
351727507	207	uncharacterized protein LOC100527004 [Gl	0.976	0.990	0.756	1e-92
217073422	207	unknown [Medicago truncatula] gi|3885012	0.976	0.990	0.726	1e-89
357517863	232	hypothetical protein MTR_8g074720 [Medic	0.995	0.900	0.710	3e-89
449434104	208	PREDICTED: UPF0548 protein At2g17695-lik	0.976	0.985	0.723	4e-87
255561315	205	conserved hypothetical protein [Ricinus	0.976	1.0	0.736	5e-87
224133942	202	predicted protein [Populus trichocarpa]	0.961	1.0	0.741	2e-86
418731084	203	hypothetical protein [Solanum tuberosum]	0.966	1.0	0.725	6e-84
30680073	205	uncharacterized protein [Arabidopsis tha	0.976	1.0	0.678	6e-83
297836486	205	hypothetical protein ARALYDRAFT_480662 [	0.976	1.0	0.678	7e-83
297742205	229	unnamed protein product [Vitis vinifera]	0.971	0.890	0.691	1e-82

>gi|351727507|ref|NP_001237163.1| uncharacterized protein LOC100527004 [Glycine max] gi|255631350|gb|ACU16042.1| unknown [Glycine max]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 180/205 (87%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           M+FLSWGRP+PQ+QK CI+KSG FNYD KYKGATAK VA LK D+GLSKDGFLLN ARVL
Sbjct: 1   MLFLSWGRPSPQDQKTCINKSGTFNYDDKYKGATAKSVASLKADEGLSKDGFLLNEARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFGLNWAFVDPKTP+Q GVKFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGIETFEKGKSALRSWRHFGLNWAFVDPKTPVQQGVKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           NE+   K   ASFGFGSGTL GHLLAGEERFSIE+D+NNQVWYE++SFSKPA  LS +GY
Sbjct: 121 NETGTAKYRTASFGFGSGTLHGHLLAGEERFSIEIDENNQVWYEVLSFSKPASILSLVGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYV LRQKYFA++S  A+ KH+ +S
Sbjct: 181 PYVMLRQKYFANESAKAMLKHINSS 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073422|gb|ACJ85070.1| unknown [Medicago truncatula] gi|388501276|gb|AFK38704.1| unknown [Medicago truncatula]

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 178/205 (86%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+ARVL
Sbjct: 1   MVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNNARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ+VYV
Sbjct: 61  VGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           NE+   K   ASFGFGSGTLQGHLLAGEERFS+E+D+NNQVWYEI+SFSKPA  LSF+GY
Sbjct: 121 NETSTTKNRGASFGFGSGTLQGHLLAGEERFSVEIDENNQVWYEILSFSKPAHVLSFVGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           P+V LRQKYFAH+S   + KH+ +S
Sbjct: 181 PHVMLRQKYFAHESAKVMLKHINSS 205

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517863|ref|XP_003629220.1| hypothetical protein MTR_8g074720 [Medicago truncatula] gi|355523242|gb|AET03696.1| hypothetical protein MTR_8g074720 [Medicago truncatula]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 150/211 (71%), Positives = 180/211 (85%), Gaps = 2/211 (0%)

Query: 2   MLTGMVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNH 61
           ++  MVFLSW RPT Q+QK CI+KSG  NYD KYKGA+AK ++ LKED+GL  DGFLLN+
Sbjct: 20  IIVRMVFLSWVRPTAQDQKNCINKSGTLNYDDKYKGASAKSLSSLKEDKGLPNDGFLLNN 79

Query: 62  ARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQ 121
           ARVLVGSG+ET+EKGK+AL++WRHFG+NWAFVDPKTP++ G KFCVCVKEFLPW+ +PLQ
Sbjct: 80  ARVLVGSGVETFEKGKSALRSWRHFGMNWAFVDPKTPVEQGAKFCVCVKEFLPWLMMPLQ 139

Query: 122 IVYVNESIRKKKTAASFGFGSGTLQGHLL--AGEERFSIELDDNNQVWYEIVSFSKPADF 179
           +VYVNE+   K   ASFGFGSGTLQGHLL  AGEERFS+E+D+NNQVWYEI+SFSKPA  
Sbjct: 140 VVYVNETSTTKNRGASFGFGSGTLQGHLLVAAGEERFSVEIDENNQVWYEILSFSKPAHV 199

Query: 180 LSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS 210
           LSF+GYPYV LRQKYFAH+S   + KH+ +S
Sbjct: 200 LSFVGYPYVMLRQKYFAHESAKVMLKHINSS 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434104|ref|XP_004134836.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus] gi|449491283|ref|XP_004158849.1| PREDICTED: UPF0548 protein At2g17695-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 149/206 (72%), Positives = 175/206 (84%), Gaps = 1/206 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQG-LSKDGFLLNHARV 64
           MVFL W RP+PQEQKACI+++G FNY++K++GATA P +CL+ED+G +S++GFLLNHAR+
Sbjct: 1   MVFLCWSRPSPQEQKACIERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARI 60

Query: 65  LVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVY 124
           LVGSG+ TYEKGK AL+ WRHFGLNWAFVD  TP+  GVKFCVC KEFLPWV LPLQIVY
Sbjct: 61  LVGSGVGTYEKGKKALQNWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVY 120

Query: 125 VNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG 184
           VNE+    K    F FGSGTLQGHLLAGEERFSIE+D N+QVWYEI+SFSKPA  LSF+ 
Sbjct: 121 VNENRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLS 180

Query: 185 YPYVQLRQKYFAHQSVNAVKKHLTAS 210
           YPY+ LRQKYFAHQS NAVKK+LT +
Sbjct: 181 YPYIILRQKYFAHQSTNAVKKYLTPT 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561315|ref|XP_002521668.1| conserved hypothetical protein [Ricinus communis] gi|223539059|gb|EEF40655.1| conserved hypothetical protein [Ricinus communis]

 Score =  325 bits (834), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 175/205 (85%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P++QK  + KS  FNYD KYKGATAKPV  LKED  L++DGF +NHARVL
Sbjct: 1   MVFLSWTRPSPRQQKDFLTKSSAFNYDPKYKGATAKPVTSLKEDSELTRDGFFVNHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           +GSGL+T++KGK+AL+ WRHFGLNWAFVDPKT IQ+GVKFCVC KEFLPWV +PLQ++YV
Sbjct: 61  LGSGLDTFDKGKSALQNWRHFGLNWAFVDPKTAIQSGVKFCVCYKEFLPWVMMPLQMIYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
            ES   KK  ASF FG GTLQGHLLAGEERFSIE+D+NNQVWYEI+SFSKP  FLSFIGY
Sbjct: 121 KESRNAKKGMASFCFGGGTLQGHLLAGEERFSIEMDENNQVWYEILSFSKPDHFLSFIGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYV+LRQK FA+QS NAV +H+ AS
Sbjct: 181 PYVKLRQKDFANQSANAVLEHVNAS 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133942|ref|XP_002327717.1| predicted protein [Populus trichocarpa] gi|222836802|gb|EEE75195.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/205 (74%), Positives = 174/205 (84%), Gaps = 3/205 (1%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W +P+ QEQK C++KS  FNYD+KY+GAT+K  + L E   LSKDGFL+NHARVL
Sbjct: 1   MVFLCWAKPSLQEQKDCLNKSDGFNYDSKYRGATSKHASSLNE---LSKDGFLINHARVL 57

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG+ETYEKGK AL+ WRHFG +W FVD KTPI++GVKFCVCVKEFLPWV +PLQIVYV
Sbjct: 58  VGSGVETYEKGKLALENWRHFGFDWGFVDSKTPIRSGVKFCVCVKEFLPWVMMPLQIVYV 117

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           NES   KK  ASF FG GTLQGHLLAGEERFSIE+D+ NQVWYE++SFSKPA FLSFIGY
Sbjct: 118 NESRSSKKDMASFCFGGGTLQGHLLAGEERFSIEMDEKNQVWYEVLSFSKPAHFLSFIGY 177

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYVQLRQK+FAHQS NAV KH++ S
Sbjct: 178 PYVQLRQKFFAHQSSNAVVKHVSGS 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731084|gb|AFX67009.1| hypothetical protein [Solanum tuberosum]

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 148/204 (72%), Positives = 169/204 (82%), Gaps = 1/204 (0%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSW RP+P EQKACI+KSG FNYD +++GAT KP   LK+D+ L+KDGF +N ARVL
Sbjct: 1   MVFLSWTRPSPDEQKACINKSGSFNYDNRFRGATDKPAPLLKQDRELAKDGFSVNCARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG ET+EKGK AL+ WRHFGLNWAFVDPK PIQ+G KFCVCVKEF PW+ +PLQ+VYV
Sbjct: 61  VGSGRETFEKGKAALQNWRHFGLNWAFVDPKAPIQSGTKFCVCVKEFFPWLMMPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
            E+ +  K  ASF FGSGTLQGHLLAGEERFSI LD+N+ VWYEI+SFSKPA  LS  GY
Sbjct: 121 TEN-KNSKMGASFSFGSGTLQGHLLAGEERFSIALDENDLVWYEILSFSKPAHLLSLFGY 179

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTA 209
           PYV LRQKYFAH S  AVKKHL+A
Sbjct: 180 PYVLLRQKYFAHHSGIAVKKHLSA 203

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680073|ref|NP_849965.1| uncharacterized protein [Arabidopsis thaliana] gi|186501122|ref|NP_001118341.1| uncharacterized protein [Arabidopsis thaliana] gi|334184277|ref|NP_001189543.1| uncharacterized protein [Arabidopsis thaliana] gi|75151174|sp|Q8GXB1.1|U548_ARATH RecName: Full=UPF0548 protein At2g17695 gi|26451700|dbj|BAC42945.1| unknown protein [Arabidopsis thaliana] gi|28973335|gb|AAO63992.1| unknown protein [Arabidopsis thaliana] gi|330251573|gb|AEC06667.1| uncharacterized protein [Arabidopsis thaliana] gi|330251574|gb|AEC06668.1| uncharacterized protein [Arabidopsis thaliana] gi|330251575|gb|AEC06669.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           +ES + +K  A FG+GSGTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYV+LRQK+FA  S  AV KH+ AS
Sbjct: 181 PYVKLRQKHFARHSSEAVLKHVNAS 205

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836486|ref|XP_002886125.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata] gi|297331965|gb|EFH62384.1| hypothetical protein ARALYDRAFT_480662 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFLSWGRP+ ++Q+  I+++G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct: 1   MVFLSWGRPSSEQQQQVINRTGAFNYDNKYRGVSSRSIAKLKEDSEVEKDGFLINHARVL 60

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSG E++EKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct: 61  VGSGRESFEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVILPLQVVYV 120

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           +ES + +K  A FG+GSGTLQGHLLAGEERFSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct: 121 DESRKSRKGPAHFGYGSGTLQGHLLAGEERFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
           PYV+LRQK+FA  S  AV KHL AS
Sbjct: 181 PYVKLRQKHFARHSSEAVLKHLKAS 205

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742205|emb|CBI34354.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 141/204 (69%), Positives = 166/204 (81%)

Query: 6   MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
           MVFL W RP+PQ+QKAC++KSG  NYD+KYKG T KP + LKED+ LS+ GF +NHAR+L
Sbjct: 26  MVFLLWSRPSPQKQKACLEKSGGINYDSKYKGFTTKPASQLKEDKELSEAGFFINHARIL 85

Query: 66  VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
           VGSGL+TYEKGK AL+ WRHF  +WAFVDP TPI+ GVKFCVC K FLPW  +PL++VYV
Sbjct: 86  VGSGLDTYEKGKVALENWRHFAFDWAFVDPTTPIRKGVKFCVCTKTFLPWTMMPLEVVYV 145

Query: 126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
           +E     K  ASFGFGSGTL GHLLAGEERFSIELD+N+QVWYE++SFSKP + LS +GY
Sbjct: 146 DEKKNANKAIASFGFGSGTLHGHLLAGEERFSIELDENDQVWYEVLSFSKPGNILSVLGY 205

Query: 186 PYVQLRQKYFAHQSVNAVKKHLTA 209
           PYVQ  QK FAH S NAV KHL+A
Sbjct: 206 PYVQSMQKRFAHLSTNAVLKHLSA 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:1005716645	205	AT2G17695 "AT2G17695" [Arabido	0.976	1.0	0.678	3e-78
DICTYBASE|DDB_G0271742	216	DDB_G0271742 "UPF0548 family p	0.704	0.685	0.337	1.4e-18
UNIPROTKB|O06198	166	Rv2616 "Conserved protein" [My	0.628	0.795	0.306	3.2e-10

TAIR|locus:1005716645 AT2G17695 "AT2G17695" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 139/205 (67%), Positives = 171/205 (83%)

Query:     6 MVFLSWGRPTPQEQKACIDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVL 65
             MVFLSWGRP+ ++Q+  I+K+G FNYD KY+G +++ +A LKED  + KDGFL+NHARVL
Sbjct:     1 MVFLSWGRPSSEQQQQVINKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVL 60

Query:    66 VGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYV 125
             VGSG E+YEKGK AL+ W+HFG++WAFVDP TP++ G KFC+CVKE LPWV LPLQ+VYV
Sbjct:    61 VGSGRESYEKGKKALQNWKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYV 120

Query:   126 NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGY 185
             +ES + +K  A FG+GSGTLQGHLLAGEE+FSIELD N +VWYEI SFSKPA FLSF+GY
Sbjct:   121 DESRKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGY 180

Query:   186 PYVQLRQKYFAHQSVNAVKKHLTAS 210
             PYV+LRQK+FA  S  AV KH+ AS
Sbjct:   181 PYVKLRQKHFARHSSEAVLKHVNAS 205

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0271742 DDB_G0271742 "UPF0548 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 53/157 (33%), Positives = 85/157 (54%)

Query:    57 FLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWA-FVDPKTPIQNGVKFCVCVKEFLPW 115
             F ++  ++ +G+G+E ++K   ALK W+HF L+W  F    TPI  G    +  K+   W
Sbjct:    50 FDVDQVKIQLGTGVECFQKAVAALKQWKHFDLDWVDFYFKNTPIAVGETVGILSKQVGFW 109

Query:   116 VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIE-------LDDNNQVWY 168
             +    +I Y+ +   ++  +  FG+  GTL+ H+  GEERF IE         D   V+Y
Sbjct:   110 ILSFARINYLYDG-DQEDGSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYY 168

Query:   169 EIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKK 205
             E++SFS+P+ +LS +GYP  +  Q  F   S N + K
Sbjct:   169 EMLSFSEPSYWLSQLGYPVTRYFQNKFVVDSCNQMLK 205

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|O06198 Rv2616 "Conserved protein" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 46/150 (30%), Positives = 77/150 (51%)

Query:    60 NHARVL--VGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLP 114
             NH  V   +G+G + +E+   A+  W   R+ GL       +T + + V   V V   + 
Sbjct:    29 NHLDVSTQIGTGRQRFEQAADAVMHWGMQRNAGLR-VRASSETAVVSAV---VLVG--IA 82

Query:   115 WVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWY-EIVSF 173
             ++  P ++VYV +    +      GFG GTL GH ++GEERF++  D    V + E++SF
Sbjct:    83 FLRAPCRVVYVIDEPDVR------GFGYGTLPGHPVSGEERFAVRCDPMTSVVFAEVLSF 136

Query:   174 SKPADFLSFIGYPYVQLRQKYFAHQSVNAV 203
             S+PA + S    P   + Q++ A + + AV
Sbjct:   137 SRPATWASKAAGPLGAVTQRFIAQRYLRAV 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      210       210   0.00080  112 3  11 22  0.49    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.27u 0.08s 19.35t   Elapsed:  00:00:01
  Total cpu time:  19.27u 0.08s 19.35t   Elapsed:  00:00:01
  Start:  Fri May 10 16:42:43 2013   End:  Fri May 10 16:42:44 2013

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXB1	U548_ARATH	No assigned EC number	0.6780	0.9761	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_570113 hypothetical protein (203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
pfam09348	158	pfam09348, DUF1990, Domain of unknown function (DU	9e-50
COG4762	168	COG4762, COG4762, Uncharacterized protein conserve	1e-19

>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990)

 Score =  158 bits (403), Expect = 9e-50
 Identities = 65/162 (40%), Positives = 91/162 (56%), Gaps = 14/162 (8%)

Query: 49  DQGLSKD----GFLLNHARVLVGSG-LETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNG 102
           + G + D    G+  +H RV +GSG  E +E+   AL +WR F L    V  P TP + G
Sbjct: 4   EVGATADGRPPGYHHDHVRVELGSGREEVFERAAQALLSWRMFRLAGVRVIAPATPPEVG 63

Query: 103 VKFCVCVKEFLPWVTLPLQIVYV-NESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELD 161
               +  +    WV  P ++VYV +E  R       FGF  GTL GH   GEERF +E D
Sbjct: 64  RTVLLRARLGGLWVLAPCRVVYVVDEPRR-------FGFAYGTLPGHPERGEERFLVERD 116

Query: 162 DNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAV 203
           D+ +VWYEI +FS+PA +LS +G P V+L Q+ FA + + A+
Sbjct: 117 DDGRVWYEITAFSRPATWLSRLGGPLVRLAQRRFARRYLRAL 158

This family of proteins are functionally uncharacterized. Length = 158

>gnl|CDD|227103 COG4762, COG4762, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 21/165 (12%)

Query: 49  DQGLSKDGFL---LNHARV--LVGSGLETYEKGKTALKTW---RHFGLNWAFVDPKTPIQ 100
           + G S  G L    NH  V   +G+G   +E    AL +W   R+ GL    V   +   
Sbjct: 15  EVGASATGRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLR---VHASSSTV 71

Query: 101 NGVKFCVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIE 159
             V   + V     W +  P +++Y+ +           GFG GTL GH++ GEERF IE
Sbjct: 72  VLVSAVLLVG---IWFLRAPCRVLYLIDEPDV------RGFGYGTLPGHVVRGEERFLIE 122

Query: 160 LDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVK 204
            D  + V +EI+SFS+PA + S +  P V + Q+  A + +  +K
Sbjct: 123 RDAMDSVVFEILSFSRPALWASKLAGPLVAVVQRRIAQRYLRGLK 167

Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
PF09348	158	DUF1990: Domain of unknown function (DUF1990); Int	100.0
COG4762	168	Uncharacterized protein conserved in bacteria [Fun	100.0
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	87.64
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	83.05

>PF09348 DUF1990: Domain of unknown function (DUF1990); InterPro: IPR018960 This entry represents proteins that are functionally uncharacterised

Probab=100.00  E-value=3.5e-61  Score=396.57  Aligned_cols=157  Identities=36%  Similarity=0.627  Sum_probs=150.3

Q ss_pred             CCCCCCCCcccCCccccccCCCCCCCCceeeeeEEEecCchhHHHHHHHHHhcccccCceeeEe-cCCCCCCCCcEEEEE
Q 028368           30 NYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFV-DPKTPIQNGVKFCVC  108 (210)
Q Consensus        30 tY~~~~vGaT~~~~~~~~~~~~~~p~Gy~~~~~~~~lG~G~~~F~~A~~aL~~W~~~~~~g~~V-~~~~p~~~G~~v~~~  108 (210)
                      |||+  ||||+.         +.+|+||+|++.+++||+|+++|++|+++|++|+||+.+|++| .+++|+.+|++|+++
T Consensus         1 tY~e--vgat~~---------~~~p~Gy~~~~~~~~lG~G~~~f~~A~~al~~W~~~~~~g~~v~~~~~~~~~G~~v~l~   69 (158)
T PF09348_consen    1 TYPE--VGATRQ---------GELPAGYRHVRRRVRLGSGEAVFERAAAALLSWRMHRRAGVRVRASDPPAAPGRTVVLR   69 (158)
T ss_pred             Cccc--ccccCC---------CCCCCCceEEEEEEEccCCchHHHHHHHHHhccCCCCCcEEEEECCCCccCCCCEEEEE
Confidence            8999  999983         3479999999999999999999999999999999999999999 566778999999999


Q ss_pred             eecccceeeeceEEEEEeecccccCCcceEEEEeecCCCCccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhhH
Q 028368          109 VKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYV  188 (210)
Q Consensus       109 ~~~~~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~~  188 (210)
                      .+.+++|+.+|||||||+||      ++++||+|||||||||+|||+|.||+|+||+|||+|+|||||++|++||++|++
T Consensus        70 ~~~~~~~~~~p~RVv~v~de------~~r~GF~ygTL~GHpe~GEE~F~V~~~~dg~V~~~I~afSRP~~~~~rl~~P~~  143 (158)
T PF09348_consen   70 AGVGPLWIRAPCRVVYVVDE------PDRFGFAYGTLPGHPERGEERFSVERDDDGSVWFEIRAFSRPASWLARLGYPVA  143 (158)
T ss_pred             eeccceEEEeeEEEEEEEcC------CceEEEEEEeCCCChhhcEEEEEEEECCCCeEEEEEEEEecccchHHHhhhHHH
Confidence            99888999999999999995      699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 028368          189 QLRQKYFAHQSVNAV  203 (210)
Q Consensus       189 r~~Qr~~~rry~~al  203 (210)
                      +.+|++|+++|++||
T Consensus       144 r~~Q~~~~rry~~am  158 (158)
T PF09348_consen  144 RRAQRRFARRYLRAM  158 (158)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999999997

>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=7e-52  Score=336.49  Aligned_cols=159  Identities=30%  Similarity=0.460  Sum_probs=148.7

Q ss_pred             cCCCCCCCCCCCcccCCccccccCCCCCCCCceeeeeEEEecCchhHHHHHHHHHhcccccCceeeEecCCCCCCCCcEE
Q 028368           26 SGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKTWRHFGLNWAFVDPKTPIQNGVKF  105 (210)
Q Consensus        26 ~~~~tY~~~~vGaT~~~~~~~~~~~~~~p~Gy~~~~~~~~lG~G~~~F~~A~~aL~~W~~~~~~g~~V~~~~p~~~G~~v  105 (210)
                      +.+++|||  +|++.         .+.+|+||+|.+++.+||.|++||++|++||++|+||+..|++|+.++++.+++.+
T Consensus         8 e~~~~~~e--~g~s~---------~gr~p~g~~~~~~~l~lG~GeacfenA~~aL~sw~~hr~aglrvh~s~s~vv~~~~   76 (168)
T COG4762           8 ELPLTYPE--VGASA---------TGRLPAGYNHLDVSLQLGTGEACFENAADALMSWGMHRNAGLRVHASSSTVVLVSA   76 (168)
T ss_pred             hcCCCccc--ccccc---------cCcCCccccceeEEEEecccHHHHHHHHHHHhcccccccccEEeeccCCceeeeee
Confidence            67899999  99997         46799999999999999999999999999999999999999999999988888655


Q ss_pred             EEEeecccce-eeeceEEEEEeecccccCCcceEEEEeecCCCCccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhh
Q 028368          106 CVCVKEFLPW-VTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIG  184 (210)
Q Consensus       106 ~~~~~~~~~~-~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg  184 (210)
                      ++..   ++| +++||||+|++||      |+++||+|||||||+++|||+|.||+|++|+|||+|.+|||||.|+++++
T Consensus        77 vllv---g~w~~r~~cRVL~l~d~------~~~~gf~yGTL~ghv~rgeErflierda~d~V~~~i~sfsr~Al~~skla  147 (168)
T COG4762          77 VLLV---GIWFLRAPCRVLYLIDE------PDVRGFGYGTLPGHVVRGEERFLIERDAMDSVVFEILSFSRPALWASKLA  147 (168)
T ss_pred             eeee---eeeeeecccEEEEEecC------CceeEEeecccCCccccchhheeEEecCCCcEEEEeeccccchhhhhhhh
Confidence            5544   466 8999999999995      79999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHH
Q 028368          185 YPYVQLRQKYFAHQSVNAVK  204 (210)
Q Consensus       185 ~P~~r~~Qr~~~rry~~al~  204 (210)
                      .|+++.+||+++++|++.|.
T Consensus       148 ~plv~~vqrr~aq~Ylrgl~  167 (168)
T COG4762         148 GPLVAVVQRRIAQRYLRGLK  167 (168)
T ss_pred             hhHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999885

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=87.64  E-value=9.6  Score=28.31  Aligned_cols=81  Identities=11%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             eeceEEEEEeecccccCCcceEEEEeecCCCCccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhhHHHHHHHHH
Q 028368          117 TLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFA  196 (210)
Q Consensus       117 ~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~~  196 (210)
                      ..-++|+...+      ++..+.|.-.  +.....+.-+|.++-.++| ..++....-+| .+...+..|+.+..-+...
T Consensus        58 ~~~~~i~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~  127 (139)
T PF10604_consen   58 TVREEITEYDP------EPRRITWRFV--PSGFTNGTGRWRFEPVGDG-TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIV  127 (139)
T ss_dssp             EEEEEEEEEET------TTTEEEEEEE--SSSSCEEEEEEEEEEETTT-EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHH
T ss_pred             ceeEEEEEecC------CCcEEEEEEE--ecceeEEEEEEEEEEcCCC-EEEEEEEEEEE-eccchhhHHHHHHHHHHHH
Confidence            34567776664      2467776654  4444467888999988888 45666555555 4456667788888888888


Q ss_pred             HHHHHHHHHHh
Q 028368          197 HQSVNAVKKHL  207 (210)
Q Consensus       197 rry~~al~~~v  207 (210)
                      ++.++.|++.+
T Consensus       128 ~~~l~~l~~~~  138 (139)
T PF10604_consen  128 REALENLKRAA  138 (139)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhccc
Confidence            88999988875

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=83.05  E-value=16  Score=26.90  Aligned_cols=100  Identities=13%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             CCCCCCCcEEEEEeecccceeeeceEEEEEeecccccCCcceEEEEeecCCCCccceeEEEEEEEcCCC-eEEEEEEEEe
Q 028368           96 KTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNESIRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNN-QVWYEIVSFS  174 (210)
Q Consensus        96 ~~p~~~G~~v~~~~~~~~~~~~~PcRVV~v~de~~~~~~~~r~GFaYGTLpGHpe~GEE~F~Ve~~~dg-~V~~~I~AFS  174 (210)
                      +.+..+|..+.+.....+..+..-++|+....       +.++-  |.... .+..++..|.++-.++| .|.+++..-.
T Consensus        39 ~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-------~~~~~--~~~~~-~~~~~~~~~~~~~~~~~t~v~~~~~~~~  108 (140)
T cd08865          39 DGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-------GRRVV--FRGSS-GPFPYEDTYTFEPVGGGTRVRYTAELEP  108 (140)
T ss_pred             CCCCcCccEEEEEEEecCceEEEEEEEEEecC-------CcEEE--EEecC-CCcceEEEEEEEEcCCceEEEEEEEEcc
Confidence            34557888887755433333445566654332       34444  44443 37789999999977665 3545554332


Q ss_pred             cCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 028368          175 KPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLT  208 (210)
Q Consensus       175 RPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~  208 (210)
                         ..+.++..+++...=+...++.+++|++.+.
T Consensus       109 ---~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e  139 (140)
T cd08865         109 ---GGFARLLDPLMAPAFRRRARAALENLKALLE  139 (140)
T ss_pred             ---chhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence               2234454555444444444556667766553

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3cnr_A	117	Type IV fimbriae assembly protein; PILZ, xanthomon	83.76

>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A

Probab=83.76  E-value=3.2  Score=31.58  Aligned_cols=43  Identities=7%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             cCceeeEecCCCCCCCCcEEEEEeecccc--eeeeceEEEEEeec
Q 028368           86 FGLNWAFVDPKTPIQNGVKFCVCVKEFLP--WVTLPLQIVYVNES  128 (210)
Q Consensus        86 ~~~~g~~V~~~~p~~~G~~v~~~~~~~~~--~~~~PcRVV~v~de  128 (210)
                      -..+|++|.++.|..+|+.|.+.+.....  .+....+|+|+...
T Consensus        29 is~GGlFI~T~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~   73 (117)
T 3cnr_A           29 VKGGGIFVPTPKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPA   73 (117)
T ss_dssp             BTTCEEEEECCSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC
T ss_pred             cCCCeEEEeeCCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCC
Confidence            45588999999999999999998763332  35677899999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	81.78

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.78  E-value=5.5  Score=26.62  Aligned_cols=73  Identities=18%  Similarity=0.167  Sum_probs=53.7

Q ss_pred             eEEEEeecCCCCccceeEEEEEEEcCCCeEEEEEEEEecCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 028368          137 SFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYVQLRQKYFAHQSVNAVKKHLTAS  210 (210)
Q Consensus       137 r~GFaYGTLpGHpe~GEE~F~Ve~~~dg~V~~~I~AFSRPa~~~~rlg~P~~r~~Qr~~~rry~~al~~~v~~~  210 (210)
                      ..-+.-..-++....++-.|.++-+++|. ..++..--.+..++.+++.++++..-++.....++.|++.++++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~gt-~v~~~~~~~~~g~~~~l~~~~v~~~~~~~~~~~l~~lk~~~~~A  147 (147)
T d2ns9a1          75 ATVKGSGRGAGSTLDFTLRFAVEPSGGGS-RVSWVFEGNVGGLAASMGGRVLDSLARRMINDVISGVKRELGEA  147 (147)
T ss_dssp             EEEEEEEECSSEEEEEEEEEEEEEETTEE-EEEEEEEEEEEEGGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             eeEEEeeeccccceeeEEEEEEEecCCCc-EEEEEEEEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33444555567778889999999877763 34444444455778999999888877888899999999988764