Citrus Sinensis ID: 028385
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 210 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.457 | 0.137 | 0.42 | 3e-13 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | no | no | 0.457 | 0.137 | 0.43 | 5e-13 | |
| Q91YR5 | 698 | Methyltransferase-like pr | no | no | 0.457 | 0.137 | 0.4 | 4e-12 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.457 | 0.142 | 0.39 | 6e-11 | |
| A5WVX1 | 690 | Methyltransferase-like pr | no | no | 0.571 | 0.173 | 0.317 | 2e-10 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.452 | 0.141 | 0.396 | 5e-10 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.428 | 0.101 | 0.347 | 5e-10 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.390 | 0.092 | 0.351 | 1e-09 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.457 | 0.138 | 0.32 | 2e-08 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.390 | 0.093 | 0.329 | 2e-08 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 75.1 bits (183), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY+DIVNIDIS V I MK + P++ +L+MD+ M F D SF V+D
Sbjct: 62 LSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQME-FPDASFQVVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD+++ +ML EV R+L+ GG Y+ I+
Sbjct: 121 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMK-MKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY DIVNIDIS V I MK PQ+ +L+MD+ M F D SF V+D
Sbjct: 62 LSEQLYDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQME-FPDASFQVVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD+++ +ML EV R+L+ GG Y+ I+
Sbjct: 121 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 71.2 bits (173), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY+DIVNIDIS V I MK + P + +L+MD+ + F D +F V+D
Sbjct: 62 LSEQLYDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLE-FPDATFQVVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD+++ +ML EV R+L+ GG Y+ I+
Sbjct: 121 KGTLDAVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCIS 160
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAID-MMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+S DM G+ DI NIDIS +A+ M+++ + P++K+LQMD M+F DESF +D
Sbjct: 62 LSMDMYDTGFRDITNIDISPIAVKKMLELNAKSRPEMKFLQMDATAMTF-PDESFSVSLD 120
Query: 80 KGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 117
KGTLD+L A E+ R ++ GG Y+ I+
Sbjct: 121 KGTLDALFADDEPETRAVVENYFKEILRTMRNGGRYVGIS 160
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY + NIDIS + M + E P L + Q+D FE SF +D
Sbjct: 62 LSEQLYDVGYRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTG-FESGSFQVTLD 120
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLD++ + + A +ML EV R+L GG Y+ IT + ++ V W + +
Sbjct: 121 KGTLDAMASEEDGAL-AGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWAVRV 179
Query: 140 YII 142
+ +
Sbjct: 180 HCL 182
|
Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAI-DMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+S DM Y DI NIDIS VA+ M++ P +K+LQMD M+ F DESF +D
Sbjct: 62 LSMDMYDSEYRDITNIDISPVAVKKMLEQNARTRPDMKFLQMDATAMT-FPDESFSVALD 120
Query: 80 KGTLDSLMCGTNAPISAS---QMLGEVSRLLKPGGIYMLIT 117
KGTLD+L +AP + + E+ R ++ GG Y ++
Sbjct: 121 KGTLDALFVD-DAPETKAVVENYFKEILRTMRNGGRYFCVS 160
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V++K
Sbjct: 72 LSYELFLGGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVLEK 130
Query: 81 GTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGG 111
GTLD+L+ G P + +S+ + V ++L G
Sbjct: 131 GTLDALLTGEQDPWTVSSEGVHTVDQVLNEAG 162
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Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ ++ ++D SSV + M+ ++ +PQL++ MDVR + F SFD V++K
Sbjct: 72 LSYELFLGGFPNVTSVDYSSVVVAAMQARHAHVPQLRWETMDVRKLD-FPSASFDVVLEK 130
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEV 103
GTLD+L+ G P + S Q+L EV
Sbjct: 131 GTLDALLAGERDPWTVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + G +++ NID+S V I M + P + + MD +F +D F AV+D
Sbjct: 62 LSEQLYDAGCQNLTNIDVSEVVIRQMNERNSNRRPNMTFQVMDATQTTF-DDSCFQAVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD++M T+ +A +++ E+ R+L GG ++ ++
Sbjct: 121 KGTLDAIMTDTDKGTLETADKLMSEIGRVLTCGGRFLCVS 160
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ ++ ++D S V + M+++Y +P L++ MDVR + F SFD V++K
Sbjct: 72 LSYELFLGGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDVRALD-FPSGSFDVVLEK 130
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEV 103
GTLD+++ G P + S Q+L EV
Sbjct: 131 GTLDAMLAGEPDPWNVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 210 | ||||||
| 356542850 | 252 | PREDICTED: methyltransferase-like protei | 0.909 | 0.757 | 0.743 | 3e-78 | |
| 388497068 | 258 | unknown [Lotus japonicus] | 0.904 | 0.736 | 0.736 | 7e-77 | |
| 225449975 | 253 | PREDICTED: methyltransferase-like protei | 0.909 | 0.754 | 0.729 | 2e-75 | |
| 22331889 | 252 | S-adenosyl-L-methionine-dependent methyl | 0.909 | 0.757 | 0.696 | 5e-75 | |
| 449436703 | 253 | PREDICTED: methyltransferase-like protei | 0.909 | 0.754 | 0.723 | 2e-74 | |
| 7329701 | 248 | putative protein [Arabidopsis thaliana] | 0.895 | 0.758 | 0.696 | 2e-74 | |
| 297817412 | 251 | hypothetical protein ARALYDRAFT_486567 [ | 0.904 | 0.756 | 0.691 | 4e-73 | |
| 224055075 | 252 | predicted protein [Populus trichocarpa] | 0.890 | 0.742 | 0.722 | 3e-72 | |
| 351726437 | 249 | uncharacterized protein LOC100527880 [Gl | 0.842 | 0.710 | 0.751 | 3e-72 | |
| 224106155 | 257 | predicted protein [Populus trichocarpa] | 0.895 | 0.731 | 0.695 | 2e-69 |
| >gi|356542850|ref|XP_003539878.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 142/191 (74%), Positives = 161/191 (84%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
VMSEDMVKDGYEDIVNIDISSVAIDMM+ KYE IPQLKY+QMDVRDMS F DESFD VID
Sbjct: 62 VMSEDMVKDGYEDIVNIDISSVAIDMMRTKYEYIPQLKYMQMDVRDMSLFPDESFDGVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCGT+APISA+QML EV RLLKPGG Y+LITYGDP RM H+ V+NWKI L
Sbjct: 122 KGTLDSLMCGTDAPISAAQMLAEVCRLLKPGGTYILITYGDPTVRMPHISRPVFNWKITL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
Y I RPGF+KP + S KSYLEP+P+T+ G LPA+FVLEDPDSH+IYVCKK+ND + +
Sbjct: 182 YNIPRPGFQKPESSTPSRKSYLEPIPLTEKGLLPADFVLEDPDSHYIYVCKKINDTEIEN 241
Query: 200 IPSYTLKGDIL 210
IP+Y L D+L
Sbjct: 242 IPAYQLTADVL 252
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497068|gb|AFK36600.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 292 bits (747), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/190 (73%), Positives = 161/190 (84%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
VMSEDMV+DGYEDIVNIDISSVAIDMM+ KYE IPQLKY+QMDVRDMS+F DESFD VID
Sbjct: 64 VMSEDMVRDGYEDIVNIDISSVAIDMMRRKYEYIPQLKYMQMDVRDMSYFPDESFDGVID 123
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCGT+APISASQML EV RLLKPGG YMLITYGDP RM HL VYNWKI L
Sbjct: 124 KGTLDSLMCGTDAPISASQMLAEVCRLLKPGGSYMLITYGDPTVRMPHLSKPVYNWKITL 183
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
Y I RPGF+KP +S+ KSYLEP+P+T+ G LP ++V+EDPDSHFIYVC+K+ D + ++
Sbjct: 184 YNIPRPGFQKPETSTSARKSYLEPIPLTEKGSLPTDWVMEDPDSHFIYVCRKIIDTEIDN 243
Query: 200 IPSYTLKGDI 209
+PSY L D+
Sbjct: 244 VPSYKLTTDV 253
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449975|ref|XP_002272409.1| PREDICTED: methyltransferase-like protein 13 [Vitis vinifera] gi|296085100|emb|CBI28595.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/192 (72%), Positives = 163/192 (84%), Gaps = 1/192 (0%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
VMSEDMVKDGYE+I+NIDISSVAI+MM+ K+E I QL+Y+QMDV+DMSFF DESFD VID
Sbjct: 62 VMSEDMVKDGYEEIMNIDISSVAIEMMRRKHEHIHQLQYMQMDVKDMSFFPDESFDCVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCGT+APISAS+MLGEVSRLLKPGGIYMLITYGDP RM HL VYNWK+ L
Sbjct: 122 KGTLDSLMCGTDAPISASRMLGEVSRLLKPGGIYMLITYGDPTVRMPHLGRPVYNWKVVL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDE-N 198
Y+I RPGF+KP G +SS KSYLEPVP T+ G L FVLEDPDSH+IY+CKKM++ E
Sbjct: 182 YVIPRPGFQKPAGSTSSAKSYLEPVPTTEKGLLLPGFVLEDPDSHYIYICKKMDETAELG 241
Query: 199 HIPSYTLKGDIL 210
+IP+Y L ++L
Sbjct: 242 NIPAYPLTSEVL 253
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331889|ref|NP_191650.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|19347803|gb|AAL86352.1| unknown protein [Arabidopsis thaliana] gi|21689777|gb|AAM67532.1| unknown protein [Arabidopsis thaliana] gi|332646605|gb|AEE80126.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 133/191 (69%), Positives = 161/191 (84%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+MSEDMVKDGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+FED+SFD +ID
Sbjct: 62 LMSEDMVKDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTIID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCG++A +SAS+MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI L
Sbjct: 122 KGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
YII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK ++ +E
Sbjct: 182 YIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQ 241
Query: 200 IPSYTLKGDIL 210
+PSY L D+L
Sbjct: 242 LPSYPLMEDVL 252
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436703|ref|XP_004136132.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449489144|ref|XP_004158228.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/192 (72%), Positives = 161/192 (83%), Gaps = 1/192 (0%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
VMSEDMVKDGYEDI+N+DISSVAIDMMK KY+ IPQLKY++MDVRDMSFF DE F AVID
Sbjct: 62 VMSEDMVKDGYEDIMNVDISSVAIDMMKRKYQFIPQLKYMEMDVRDMSFFPDEKFGAVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCGT+APISA+QMLGEVSRLLKPGG+Y+LITYGDPK RM HL YNWKI L
Sbjct: 122 KGTLDSLMCGTDAPISAAQMLGEVSRLLKPGGVYLLITYGDPKVRMPHLMRPSYNWKIAL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
+II RPG+++P CS+ KS LE VP+T++G L FV+EDPDSHFIYVC+K++D D N+
Sbjct: 182 FIIPRPGYQRPEECSTPEKSNLEQVPLTENGLLSPNFVMEDPDSHFIYVCQKLDDSDPNN 241
Query: 200 I-PSYTLKGDIL 210
I P Y L D L
Sbjct: 242 IVPPYPLSTDAL 253
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7329701|emb|CAB82695.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 131/188 (69%), Positives = 158/188 (84%)
Query: 23 EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82
EDMVKDGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+FED+SFD +IDKGT
Sbjct: 61 EDMVKDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTIIDKGT 120
Query: 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYII 142
LDSLMCG++A +SAS+MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI LYII
Sbjct: 121 LDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISLYII 180
Query: 143 ARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPS 202
RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK ++ +E +PS
Sbjct: 181 PRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQLPS 240
Query: 203 YTLKGDIL 210
Y L D+L
Sbjct: 241 YPLMEDVL 248
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817412|ref|XP_002876589.1| hypothetical protein ARALYDRAFT_486567 [Arabidopsis lyrata subsp. lyrata] gi|297322427|gb|EFH52848.1| hypothetical protein ARALYDRAFT_486567 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/191 (69%), Positives = 157/191 (82%), Gaps = 1/191 (0%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+MSEDMV DGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+F D+SFD VID
Sbjct: 62 LMSEDMVNDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFADDSFDTVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCG++A +SA +MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI L
Sbjct: 122 KGTLDSLMCGSDALLSAPRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
YII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK D +E
Sbjct: 182 YIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKK-KDEEEAQ 240
Query: 200 IPSYTLKGDIL 210
+PSY L D+L
Sbjct: 241 LPSYPLMADVL 251
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055075|ref|XP_002298412.1| predicted protein [Populus trichocarpa] gi|222845670|gb|EEE83217.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 164/191 (85%), Gaps = 4/191 (2%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+MSEDMV DGYE+I+N+DISSVAID+M+ KYE +PQL Y++MDVRDMSFF DESFDAVID
Sbjct: 62 LMSEDMVDDGYENIMNVDISSVAIDLMRRKYEHMPQLNYMEMDVRDMSFFPDESFDAVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138
KGTLDSLMCG++APISA++MLGEVSR LLKPGGIYMLITYGDPK RM HL +Y+WKI
Sbjct: 122 KGTLDSLMCGSDAPISAARMLGEVSRLLLKPGGIYMLITYGDPKVRMPHLTRSIYSWKIV 181
Query: 139 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMND-MDE 197
LY I RPGF+KP G SS+ S+LEPVPIT+ G LPA+FVL+DPDSHFIYVCKKM++ D
Sbjct: 182 LYAIPRPGFKKPAGSSSN--SHLEPVPITETGLLPADFVLDDPDSHFIYVCKKMDETTDL 239
Query: 198 NHIPSYTLKGD 208
++I S+ L D
Sbjct: 240 SNISSHPLIAD 250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726437|ref|NP_001235079.1| uncharacterized protein LOC100527880 [Glycine max] gi|255633450|gb|ACU17083.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/177 (75%), Positives = 149/177 (84%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
VMSEDMVKDGYEDIVNIDISS+AIDMM KYE IPQLKYLQM+VRDMS F DESFD VID
Sbjct: 62 VMSEDMVKDGYEDIVNIDISSIAIDMMSRKYEHIPQLKYLQMNVRDMSLFPDESFDGVID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCGT+APISA+QML EV RLLKPGG Y+LITYGDP RM H+ V+NWKI L
Sbjct: 122 KGTLDSLMCGTDAPISAAQMLAEVCRLLKPGGTYILITYGDPTVRMPHISRPVFNWKITL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMD 196
Y I RPGF+KP + S KSYLEP+ +T+ G L A+FVLEDPDSH+IYVCKK+ND +
Sbjct: 182 YNIPRPGFQKPESSTPSRKSYLEPIALTEKGLLSADFVLEDPDSHYIYVCKKINDTE 238
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106155|ref|XP_002314063.1| predicted protein [Populus trichocarpa] gi|222850471|gb|EEE88018.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 137/197 (69%), Positives = 158/197 (80%), Gaps = 9/197 (4%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
MSEDMV+DGYE+I NIDISSVAID+M+ KYE + QL Y++MD RDMSFF D+SFDAV+DK
Sbjct: 63 MSEDMVEDGYENITNIDISSVAIDIMRRKYEHVHQLNYMEMDARDMSFFPDKSFDAVVDK 122
Query: 81 GTLDSL------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYN 134
G SL CG++APIS+ +MLGEVSRLLKPGGIYMLITYGDPK RM HL +YN
Sbjct: 123 GIFLSLPLDLLFNCGSDAPISSVRMLGEVSRLLKPGGIYMLITYGDPKVRMPHLTRSIYN 182
Query: 135 WKIELYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMND 194
WKI LYII RPGFEKPGG SS+ S+LEPVPI+D G LPA+FVLEDPDSHFIYVCKKM++
Sbjct: 183 WKIILYIIPRPGFEKPGGSSSN--SHLEPVPISDTGVLPADFVLEDPDSHFIYVCKKMDE 240
Query: 195 MDE-NHIPSYTLKGDIL 210
E + I SY L D L
Sbjct: 241 TTEVSDISSYPLIADAL 257
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 210 | ||||||
| TAIR|locus:2101861 | 252 | AT3G60910 "AT3G60910" [Arabido | 0.909 | 0.757 | 0.696 | 1.6e-72 | |
| DICTYBASE|DDB_G0282393 | 232 | DDB_G0282393 "Methyltransferas | 0.566 | 0.512 | 0.466 | 1.5e-26 | |
| ZFIN|ZDB-GENE-070912-214 | 260 | si:ch211-224b1.4 "si:ch211-224 | 0.566 | 0.457 | 0.382 | 4.1e-17 | |
| UNIPROTKB|D4ADU7 | 255 | LOC100363561 "Protein LOC10036 | 0.552 | 0.454 | 0.336 | 6e-16 | |
| UNIPROTKB|G3N1Q4 | 255 | ECE2 "Endothelin-converting en | 0.552 | 0.454 | 0.352 | 7.7e-16 | |
| UNIPROTKB|F1PUB6 | 255 | ECE2 "Uncharacterized protein" | 0.552 | 0.454 | 0.352 | 7.7e-16 | |
| TAIR|locus:2116174 | 248 | AT4G34360 "AT4G34360" [Arabido | 0.595 | 0.504 | 0.357 | 6.9e-15 | |
| TAIR|locus:2045253 | 760 | AT2G31740 [Arabidopsis thalian | 0.585 | 0.161 | 0.344 | 1.9e-14 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.457 | 0.137 | 0.44 | 7.2e-14 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.457 | 0.157 | 0.43 | 9.3e-14 |
| TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 133/191 (69%), Positives = 161/191 (84%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+MSEDMVKDGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+FED+SFD +ID
Sbjct: 62 LMSEDMVKDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTIID 121
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLDSLMCG++A +SAS+MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI L
Sbjct: 122 KGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKISL 181
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENH 199
YII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK ++ +E
Sbjct: 182 YIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQ 241
Query: 200 IPSYTLKGDIL 210
+PSY L D+L
Sbjct: 242 LPSYPLMEDVL 252
|
|
| DICTYBASE|DDB_G0282393 DDB_G0282393 "Methyltransferase-like protein 12, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 56/120 (46%), Positives = 80/120 (66%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVID 79
+ EDM D + DI+N+D S I+ MK + + L+YL MD RDM FF+D FD V D
Sbjct: 56 LGEDMNDDEFVDIINMDYSEPLIEYMKERTKGRIGLEYLTMDGRDMKPFFKDNHFDHVFD 115
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KGTLD++MC + +A Q+L EVSR+LKPGG ++++TYG P++R+ L ++NW EL
Sbjct: 116 KGTLDAVMCSDDDNENAKQILLEVSRVLKPGGFFIVMTYGSPESRLPLLNNPIHNWTTEL 175
|
|
| ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 49/128 (38%), Positives = 75/128 (58%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S DM + GY I N+D SSV ++ M ++++ QL +L MD R ++F D FD V++K
Sbjct: 77 LSYDMCQAGYSSITNVDYSSVCVESMAERHKDCAQLNWLCMDARRLAF-PDGVFDVVLEK 135
Query: 81 GTLDSLMCGTNAP--ISAS------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 132
GTLD+++ P IS + Q+L EVSR+LKPGG ++ +T+ P R
Sbjct: 136 GTLDAMLVEETDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRKRLYAQAE 195
Query: 133 YNWKIELY 140
Y+W I+ Y
Sbjct: 196 YDWSIKHY 203
|
|
| UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 42/125 (33%), Positives = 72/125 (57%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ ++ ++D S V + M+++Y +P L++ MD+R + F SFD V++K
Sbjct: 72 LSYELFLGGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDIRALDF-PSGSFDVVLEK 130
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 132
GTLD+L+ G P + S Q+L EVSR+L PGG ++ +T P R+ H
Sbjct: 131 GTLDALLAGEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTPAGPHFRIRHYAQPC 190
Query: 133 YNWKI 137
Y+W +
Sbjct: 191 YDWSL 195
|
|
| UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 44/125 (35%), Positives = 69/125 (55%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V++K
Sbjct: 72 LSYEIFLGGFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALGF-PSGSFDVVLEK 130
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 132
GTLD+L+ G P + S Q+L EVSR+L P G ++ +T P R H
Sbjct: 131 GTLDALLTGEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTSAAPHFRTRHYAQAH 190
Query: 133 YNWKI 137
Y W +
Sbjct: 191 YGWSL 195
|
|
| UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 44/125 (35%), Positives = 70/125 (56%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V++K
Sbjct: 72 LSYELFLGGFPDVTSVDYSSVVVAAMQARYAHVPTLRWETMDVRALDF-PSGSFDVVLEK 130
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 132
GTLD+L+ G P + S Q+L EVSR+L GG ++ +T P R+ H
Sbjct: 131 GTLDALLAGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTSAAPHFRIRHYAQAR 190
Query: 133 YNWKI 137
Y W +
Sbjct: 191 YGWSL 195
|
|
| TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 49/137 (35%), Positives = 76/137 (55%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVI 78
+ E++ KDG DI ID+SSVA++ M+ + + ++K +Q D+ D+ F + ESFD VI
Sbjct: 64 LCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLPF-DSESFDVVI 122
Query: 79 DKGTLDSLMCGTN-----APISASQMLGE---VSRLLKPGGIYMLITYGDPKARMIHLKW 130
+KGT+D L P + S+++ V R+LKP GI++ IT+G P R K
Sbjct: 123 EKGTMDVLFVDAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKD 182
Query: 131 KVYNWKIELYIIARPGF 147
+ W +E Y GF
Sbjct: 183 PKFTWSME-YNTFGDGF 198
|
|
| TAIR|locus:2045253 AT2G31740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 43/125 (34%), Positives = 68/125 (54%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAI-DMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
++E + G+ DI N+D S V I DM++ P+L++ MD+ M DESFD V+D
Sbjct: 82 LTEHLYDAGFRDITNVDFSKVVISDMLRRNIRTRPELRWRVMDITKMQL-ADESFDTVLD 140
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
KG LD+LM +Q L E R+LKPGG ++ +T + + + WK+ +
Sbjct: 141 KGALDALMEPEVGTKLGNQYLSEAKRVLKPGGKFICLTLAESHVLALLFSRFRFGWKMNV 200
Query: 140 YIIAR 144
+ IA+
Sbjct: 201 HSIAQ 205
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 44/100 (44%), Positives = 60/100 (60%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY+DIVNIDIS V I MK + PQL +L+MD+ M F D SF V+D
Sbjct: 62 LSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEF-PDASFQVVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD+++ +ML EV R+L+ GG Y+ I+
Sbjct: 121 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 43/100 (43%), Positives = 60/100 (60%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+SE + GY+DIVNIDIS V I MK + PQ+ +L+MD+ M F D SF V+D
Sbjct: 62 LSEQLYDVGYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEF-PDASFQVVLD 120
Query: 80 KGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 117
KGTLD+++ +ML EV R+L+ GG Y+ I+
Sbjct: 121 KGTLDAVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028686001 | SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (253 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 210 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-10 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 5e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-06 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 3e-05 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-04 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.002 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.004 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-10
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+ +D+S + + + + K++ D D+ F DESFD V+ L L
Sbjct: 21 RVTGVDLSPEMLALARKR----APRKFVVGDAEDLPF-PDESFDVVVSSLVLHHLP---- 71
Query: 92 APISASQMLGEVSRLLKPGGIYML 115
+ L E++R+LKPGG ++
Sbjct: 72 ---DPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-09
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 25 MVKDGYEDIVNIDISSVAIDMMKMK--YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82
+ + +DIS VA+++ + ++ L+ D ++ DESFD +I
Sbjct: 16 LASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVII---- 71
Query: 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118
S + ++ L E RLLKPGG+ +L
Sbjct: 72 --SDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-08
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 32 DIVNIDISSVAIDMMK--MKYEEIPQLKYLQMDVRDM--SFFEDESFDAVIDKGTLDSLM 87
++V IDIS AI+ K K ++++Q D+ ++ ED SFD VI L+ L
Sbjct: 30 EVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHL- 88
Query: 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITY 118
P L E+ R+LKPGG+ ++
Sbjct: 89 ---PDPDKV---LEEIIRVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 36 IDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI 94
+DIS A+++ K + + P+++++ D RD+ F E+ SFD VI L +P
Sbjct: 26 VDISKEALELAKERLRDKGPKVRFVVADARDLPF-EEGSFDLVI----CAGLSLDYLSPK 80
Query: 95 SASQMLGEVSRLLKPGG 111
+L E +RLL+PGG
Sbjct: 81 QLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-05
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 32 DIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 89
+ +D+S +++ + + P++ ++Q D D + E FDAV G L+
Sbjct: 27 RVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD-ALDLLEGFDAVFIGGGGGDLL-- 83
Query: 90 TNAPISASQMLGEVSRLLKPGGIYML 115
++L ++ LLKPGG +L
Sbjct: 84 --------ELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 33 IVNIDISSVAIDMMKM-KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+V ID S + + K P +++++ D + F D SFDAV L L
Sbjct: 47 VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF-PDGSFDAVRSDRVLQHL----E 101
Query: 92 APISASQMLGEVSRLLKPGG 111
P ++ L E++R+L+PGG
Sbjct: 102 DP---ARALAEIARVLRPGG 118
|
Length = 241 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 1e-04
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMD--VRDMSFFEDESFDAVIDKGTLDSLMCG 89
+ +DIS A++ + + L +++ V D + SFD V+ L L
Sbjct: 22 EYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHL--- 78
Query: 90 TNAPISASQMLGEVSRLLKPGGIY 113
A +L + RLLKPGG+
Sbjct: 79 --ADPR--AVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 26/97 (26%)
Query: 36 IDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNA 92
+++ A + + + P+++ + D R++ D SFD V+ N
Sbjct: 30 VELDPEAAALARRRLALAGLAPRVRVVVGDARELLELPDGSFDLVL-----------GNP 78
Query: 93 PISASQM------------LGEVSRLLKPGGIYMLIT 117
P L RLLKPGG+ ++IT
Sbjct: 79 PYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVIT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 33/114 (28%)
Query: 33 IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV-----------IDKG 81
+ +D SS +++ K K E ++++Q D + FED SFDAV I K
Sbjct: 67 VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLRNVTDIQKA 125
Query: 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 135
L E+ R+LKPGG +++ + P ++ K Y +
Sbjct: 126 ------------------LREMYRVLKPGGRLVILEFSKPANALLK---KFYKF 158
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 210 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.91 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.91 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.87 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.87 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.82 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.82 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.81 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.81 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.8 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.79 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.79 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.78 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.78 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.77 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.77 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.76 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.76 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.75 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.75 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.75 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.75 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.74 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.74 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.74 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.73 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.73 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.73 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.73 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.72 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.72 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.72 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.72 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.71 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.71 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.71 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.7 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.69 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.69 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.68 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.67 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.66 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.66 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.66 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.65 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.63 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.62 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.62 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.61 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.59 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.59 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.58 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.58 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.57 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.57 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.57 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.57 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.57 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.55 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.55 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.55 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.55 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.55 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.54 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.54 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.54 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.54 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.53 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.52 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.52 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.52 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.52 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.51 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.51 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.5 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.5 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.49 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.49 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.48 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.48 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.47 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.47 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.46 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.46 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.45 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.45 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.45 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.44 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.44 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.44 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.44 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.42 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.42 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.42 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.41 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.39 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.39 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.38 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.37 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.37 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.37 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.36 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.35 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.34 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.33 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.33 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.33 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.32 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.3 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.3 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.29 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.28 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.26 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.25 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.25 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.25 | |
| PLN02366 | 308 | spermidine synthase | 99.24 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.2 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.19 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.19 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.19 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.18 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.18 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.18 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.18 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.17 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.16 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.16 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.16 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.12 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.11 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.09 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.07 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.07 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.05 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.05 | |
| PLN02476 | 278 | O-methyltransferase | 99.04 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.03 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 99.01 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.01 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.0 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.99 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.97 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.96 | |
| PLN02823 | 336 | spermine synthase | 98.96 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.93 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.93 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.93 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.92 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.92 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.91 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.89 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.88 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.88 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.87 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.87 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.86 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.82 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.82 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.82 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.81 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.8 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.79 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.78 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.78 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.77 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.76 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.76 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.74 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.74 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.72 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.71 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.71 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.68 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.67 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.66 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.65 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.65 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.65 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.62 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.61 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.59 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.59 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.59 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.59 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.55 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.54 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.54 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.52 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.49 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.38 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.37 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.36 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.32 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.27 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.27 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.27 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.25 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.24 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.23 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.23 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.22 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.22 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.2 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.19 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.15 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.12 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.09 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.08 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.07 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.05 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.04 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.02 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.0 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.96 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.93 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.92 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.83 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.82 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.82 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.81 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.79 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.74 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.7 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.69 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.63 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.63 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.58 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.5 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.44 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.42 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.41 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.4 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.37 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.34 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.32 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.29 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.27 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.19 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.16 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.11 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.1 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.02 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.95 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.89 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.87 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.79 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.74 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.48 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.47 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.42 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.41 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.38 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.35 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 96.3 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.22 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.19 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.1 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 96.1 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 96.05 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.02 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 95.95 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.88 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.84 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.81 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.77 | |
| PHA01634 | 156 | hypothetical protein | 95.65 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.61 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.36 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.21 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.19 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.18 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.06 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.86 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 94.82 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.82 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.72 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.66 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.63 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 94.23 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.22 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 94.17 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.16 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.01 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 93.95 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.44 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.36 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.32 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.3 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.13 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.08 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 93.06 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 92.94 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 92.89 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.88 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.8 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.72 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 92.63 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 92.55 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.36 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.23 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.99 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.98 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 91.85 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.19 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 91.05 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.0 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.79 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 90.68 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.61 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.49 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 89.96 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 89.56 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 89.12 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 89.09 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 89.03 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 88.86 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 88.63 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 88.54 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 88.53 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 88.39 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.38 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.33 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 88.2 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.03 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 87.84 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.74 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 87.72 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.61 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 87.59 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.53 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.28 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 87.22 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.1 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.04 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 86.54 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.39 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 86.26 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 86.25 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.19 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 86.16 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.13 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 85.65 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 85.63 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 85.59 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 85.42 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.73 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 84.65 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 84.58 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 84.55 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 84.51 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 84.27 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.17 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 84.06 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 83.96 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 83.92 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.83 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 83.69 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 83.55 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.25 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 83.21 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 83.2 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 83.19 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 83.12 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 82.95 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 82.57 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 82.19 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 82.01 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.92 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 81.92 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 81.85 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 81.32 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 81.29 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 81.22 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 81.15 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 81.0 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 80.95 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 80.8 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 80.64 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 80.58 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 80.4 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 80.37 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 80.35 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 80.35 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 80.2 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.1 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 80.09 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-24 Score=165.57 Aligned_cols=109 Identities=25% Similarity=0.411 Sum_probs=100.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||||.++..+++. +..+|+++|+|+.|++.|+++..+. .+++|+++|++++| |++++||+|.+.+.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 3468999999999999999987 5568999999999999999999653 44999999999999 999999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
+++ .+.+++|+|++|+|||||+++++++..|..
T Consensus 130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999 999999999999999999999999998764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=168.79 Aligned_cols=128 Identities=24% Similarity=0.459 Sum_probs=89.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||||.++..+++. +..+|+++|+|+.|++.|+++.+. ..+++++++|++++| +++++||+|++.+.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCSFG 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEES-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHHhh
Confidence 3458999999999999999876 335899999999999999999853 368999999999999 99999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecCCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPG 146 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~ 146 (210)
++.+ .+..++++|++|+|||||++++++++.|.... + +..+.++.. ..+|..+
T Consensus 126 lrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~--~-~~~~~~y~~-~ilP~~g 178 (233)
T PF01209_consen 126 LRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPL--L-RALYKFYFK-YILPLIG 178 (233)
T ss_dssp GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH--H-HHHHHH-----------
T ss_pred HHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCch--h-hceeeeeec-ccccccc
Confidence 9988 88999999999999999999999999876532 1 234445554 5666644
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-23 Score=157.34 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=125.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..++|||+|||.|.+++.+++.|. +|+|+|.++.+++.|+.+.... -++++.+..++++. ...++||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH-hcCCCccEEEEhhHHHc
Confidence 347899999999999999999996 9999999999999999887443 45678888888876 55689999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecC--CCCCCCCCCC---------
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR--PGFEKPGGCS--------- 154 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~--------- 154 (210)
+ +++..+++++.+.+||||.+++.+.++-. ..++......-++ +..+|+ +.+..+.++.
T Consensus 137 v-------~dp~~~~~~c~~lvkP~G~lf~STinrt~--ka~~~~i~~ae~v-l~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 V-------PDPESFLRACAKLVKPGGILFLSTINRTL--KAYLLAIIGAEYV-LRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEeccccCH--HHHHHHHHHHHHH-HHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 9 99999999999999999999998877422 1111111111111 234444 3333333333
Q ss_pred ---CCCccccCCcccCCCCCCccccccCCCCceEEEEEEecC
Q 028385 155 ---SSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 193 (210)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~ 193 (210)
.....++.++|+...+.+.. +.+.+|+..++|+.
T Consensus 207 ~~~~~~~~g~~y~p~~~~~~l~~-----~~~vNy~~~~~~~~ 243 (243)
T COG2227 207 NLKIIDRKGLTYNPLTNSWKLSN-----DVSVNYMVHAQRPA 243 (243)
T ss_pred CceEEeecceEeccccceEEecC-----CccceEEEEeecCC
Confidence 22334567788877776655 56889999998863
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=131.25 Aligned_cols=95 Identities=26% Similarity=0.440 Sum_probs=84.4
Q ss_pred EEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCC
Q 028385 12 CRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~ 91 (210)
||+|||+|..+..+++.+..+++++|+++.+++.++++... .++.+.++|+.+++ +++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999555999999999999999998854 45669999999999 999999999999999999
Q ss_pred chHHHHHHHHHHHHhccCCcEEEE
Q 028385 92 APISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 92 ~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++..++++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=157.43 Aligned_cols=169 Identities=16% Similarity=0.172 Sum_probs=120.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.+. +|+|+|.++.+++.|+++.... .++.++++|+++++ +.+++||+|++..+++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHHH
Confidence 35899999999999999988765 8999999999999999876322 47899999999988 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh--HhhhcccccceEEEEEEecC--CCCCCCCCCC------
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR--MIHLKWKVYNWKIELYIIAR--PGFEKPGGCS------ 154 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~------ 154 (210)
|+ .+...+++++.++|||||.+++.+.+..... .... . ..++ ...+|. +.+..+..+.
T Consensus 210 Hv-------~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~-~---~eyi-~~~lp~gth~~~~f~tp~eL~~lL 277 (322)
T PLN02396 210 HV-------ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIV-G---AEYI-LRWLPKGTHQWSSFVTPEELSMIL 277 (322)
T ss_pred hc-------CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhh-h---HHHH-HhcCCCCCcCccCCCCHHHHHHHH
Confidence 99 8899999999999999999998886643211 0000 0 0000 011222 1111111111
Q ss_pred ------CCCccccCCcccCCCCCCccccccCCCCceEEEEEEecCCc
Q 028385 155 ------SSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDM 195 (210)
Q Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~ 195 (210)
.....++.+.|+...+.+.. +..++|+..++|..+.
T Consensus 278 ~~aGf~i~~~~G~~~~p~~~~w~~~~-----~~~~ny~~~~~k~~~~ 319 (322)
T PLN02396 278 QRASVDVKEMAGFVYNPITGRWLLSD-----DISVNYIAYGTKRKDL 319 (322)
T ss_pred HHcCCeEEEEeeeEEcCcCCeEEecC-----CCceeehhheecCccC
Confidence 11223455667776666543 5688999999997654
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=149.49 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=95.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc-----CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE-----EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++. + ..+|+|+|+|++|++.|+++.. ..++++++++|+.++| +++++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 3468999999999999988875 3 3589999999999999987753 1257999999999999 99999999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+++|++ .++.+++++++|+|||||.+++.++..+.
T Consensus 152 ~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 152 GYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 9999999 88999999999999999999999988765
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=138.96 Aligned_cols=115 Identities=17% Similarity=0.295 Sum_probs=99.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C------CCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G------YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~------~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~ 73 (210)
...+++||++||||.++..+.++ + ..+|+.+|+||.|+..++++.++. ..+.|+++|++++| |++++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s 177 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDS 177 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCc
Confidence 34489999999999999999886 2 257999999999999999988432 35899999999999 99999
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch-hhHhhh
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHL 128 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~-~~~~~~ 128 (210)
||.....+.+..+ .++++.+++++|+|||||+|++.+++.-+ ..+.++
T Consensus 178 ~D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 178 FDAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred ceeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 9999988888777 89999999999999999999999998655 344444
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=132.67 Aligned_cols=142 Identities=23% Similarity=0.418 Sum_probs=114.4
Q ss_pred CEEEeCCCCchhHHHHHHcCCCc-EEEEeCCHHHHHHHHHhhcC--CCC-cEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYED-IVNIDISSVAIDMMKMKYEE--IPQ-LKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~-v~~vD~s~~~~~~a~~~~~~--~~~-v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|||+|||+|.+...+++.++.. ++|+|+|+.+++.|+...+. .++ ++|.+.|+.+.. +..+.||+|+.++++++
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceee
Confidence 99999999999999999987644 99999999999999887743 244 999999999876 88899999999999999
Q ss_pred hccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCCc-hhhHhhhcccccceEEEEEEecCCCCCCCCCCCC
Q 028385 86 LMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGDP-KARMIHLKWKVYNWKIELYIIARPGFEKPGGCSS 155 (210)
Q Consensus 86 ~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 155 (210)
+..+ ......+..++..+.++|+|||+|+|.+++-. ......+ ...++.+ +..+|.|.|.|+++.|.
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f--~~~~f~~-~~tvp~ptF~FgG~~G~ 217 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF--ENFNFEY-LSTVPTPTFMFGGSVGS 217 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH--hcCCeEE-EEeeccceEEecccccc
Confidence 9644 44444557889999999999999999998742 2333333 1233444 58899999999988775
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=147.45 Aligned_cols=106 Identities=16% Similarity=0.225 Sum_probs=93.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++..+++....+|+|+|+|+.|++.++++.+.. ++++|+++|+.+++ +++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 344689999999999999999864448999999999999999876432 57999999999998 99999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ .+..+++++++|+|||||.+++.++.
T Consensus 196 ~~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999 88899999999999999999998753
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-19 Score=122.12 Aligned_cols=104 Identities=25% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhh---cCCCCcEEEEccc-CCCCCCCCCcccEEEECC-
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKY---EEIPQLKYLQMDV-RDMSFFEDESFDAVIDKG- 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~---~~~~~v~~~~~d~-~~~~~~~~~~fD~Vi~~~- 81 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.|++.|+++. ...++++++++|+ .... ..+.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECCC
Confidence 468999999999999999993 5558999999999999999998 2237999999999 3333 345699999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++++. +.++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 555431 22678899999999999999998865
|
... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-19 Score=139.90 Aligned_cols=109 Identities=13% Similarity=0.258 Sum_probs=95.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||||||+|..+..+++....+|+++|+|+.|++.|+++....+++.+.++|+.+.+ +++++||+|++..+++|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeEEEEEhhhHHh
Confidence 34568999999999999988775344899999999999999998765567999999999888 88999999999998888
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ +..+...++++++++|||||.+++.++..
T Consensus 130 ~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 L-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred C-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 7 44588999999999999999999988643
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=132.89 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++... ..++++.+.|+.+.+ + +++||+|++..++|
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~ 106 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLM 106 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-c-CCCcCEEEEecchh
Confidence 457899999999999999999876 899999999999999987643 356889999998876 5 46799999999998
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ +..+...+++++.++|||||.++++.+
T Consensus 107 ~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 107 FL-----EAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 87 556789999999999999999766543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-19 Score=133.06 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=96.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcE-EEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-YLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~-~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.+.+.|||+|||||..-..+-..+...|+++|.++.|-+.+.++.++. .++. |+.++.++++.++++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 345689999999999977665556668999999999999999888543 5676 9999999998889999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
|... +++.+.|+++.|+|+|||+++++++....
T Consensus 155 LCSv-------e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 155 LCSV-------EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 9998 99999999999999999999999998533
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=128.33 Aligned_cols=105 Identities=25% Similarity=0.427 Sum_probs=90.9
Q ss_pred CCCCEEEeCCCCchhHHHHHH-c-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCC-CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK-D-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~-~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++ . +..+++|+|+|+.|++.|+++.+ ..++++|.++|+.+++. ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 457899999999999999994 3 44589999999999999999764 34689999999999651 22 7999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++|+ .+...+++++.++||+||.+++.++.
T Consensus 82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999 88999999999999999999988876
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=140.19 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=93.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ++++++++|+.+++.+.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 346899999999999999999875 8999999999999999887532 578999999988642567899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .++..+++++.++|||||.++++.++.
T Consensus 123 ~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 123 EWV-------ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred Hhh-------CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999 788899999999999999998877664
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=137.10 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=91.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+.+.+. +++++|+|+.|++.++++.. ...++++|+.+++ +++++||+|+++.+++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEEEEECchhhhc
Confidence 346899999999999999888764 89999999999999998763 3578999999998 889999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...++.++.++|||||.+++.++..
T Consensus 117 -------~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 117 -------GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -------CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 889999999999999999999987664
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=133.82 Aligned_cols=108 Identities=19% Similarity=0.295 Sum_probs=94.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.+++.++++.+. .++++++++|+.+++ +++++||+|++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFG 123 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecc
Confidence 3468999999999999999875 335899999999999999988743 367999999999988 88899999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++++ ++..++++++.++|||||.+++.+...+.
T Consensus 124 l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 124 LRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred cccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 9998 78889999999999999999988876544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-18 Score=129.45 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=87.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.... -++.+...|+...+ ++ ++||+|++..++|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-LN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-cc-CCCCEEEEecccc
Confidence 3457999999999999999999876 8999999999999998776321 24778888887665 43 5899999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ +..+...++++++++|||||+++++.+
T Consensus 106 ~~-----~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 106 FL-----QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred cC-----CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 87 556788999999999999999766653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=119.47 Aligned_cols=95 Identities=27% Similarity=0.548 Sum_probs=81.0
Q ss_pred EEEeCCCCchhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCc-cc
Q 028385 11 TCRRAAPSIVMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT-LD 84 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~-l~ 84 (210)
|||+|||+|..+..+++.. ..+++++|+|+.|++.++++... ..++++++.|+.+++ +.+++||+|++++. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999998762 25899999999999999998843 258999999999988 78889999999654 99
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGG 111 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG 111 (210)
|+ +.++..++++++.++|||||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 98 77899999999999999998
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-18 Score=134.88 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++ +++++++|+.+++ ++++||+|+++.++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCceEEEEehhhh
Confidence 34568999999999999999886 345899999999999999763 5789999998764 467999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .+..+++++++++|||||.+++...
T Consensus 101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WV-------PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hC-------CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 99 7889999999999999999987643
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-18 Score=132.32 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=86.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||+|||||.++..+++....+|+|+|+|++|++.|+++. .++++|++++| +++++||+|++.++++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v~~~~~l~~~- 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVVMSSFALHAS- 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEEEecChhhcc-
Confidence 4689999999999999998873248999999999999998752 46789999999 999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
.+..+++++++|+|||. +.+++++.|..
T Consensus 124 ------~d~~~~l~e~~RvLkp~--~~ile~~~p~~ 151 (226)
T PRK05785 124 ------DNIEKVIAEFTRVSRKQ--VGFIAMGKPDN 151 (226)
T ss_pred ------CCHHHHHHHHHHHhcCc--eEEEEeCCCCc
Confidence 89999999999999993 33566666653
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-18 Score=132.74 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=108.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
++|||+|||+|.+++.|++.|. +|+|+|.++.|++.|+++....| ++.+.+.|++... +.||+|+|+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeeeH
Confidence 5799999999999999999986 99999999999999999853221 3567777777654 349999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEecC--CCCCCCCCCC----
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR--PGFEKPGGCS---- 154 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~---- 154 (210)
.+++|+ .+++.++..+.++|||||.+++.+.++- ...++.......++ ++++|+ +.|+.+..+.
T Consensus 166 evleHV-------~dp~~~l~~l~~~lkP~G~lfittinrt--~lS~~~~i~~~E~v-l~ivp~Gth~~ekfi~p~e~~~ 235 (282)
T KOG1270|consen 166 EVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINRT--ILSFAGTIFLAEIV-LRIVPKGTHTWEKFINPEELTS 235 (282)
T ss_pred HHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhhh--HHHhhccccHHHHH-HHhcCCCCcCHHHcCCHHHHHH
Confidence 999999 9999999999999999999999887652 22222122222222 345565 3344333332
Q ss_pred --------CCCccccCCcccCCCCCCcc
Q 028385 155 --------SSMKSYLEPVPITDDGQLPA 174 (210)
Q Consensus 155 --------~~~~~~~~~~~~~~~~~~~~ 174 (210)
...+-+.-++|++..+....
T Consensus 236 ~l~~~~~~v~~v~G~~y~p~s~~w~~~~ 263 (282)
T KOG1270|consen 236 ILNANGAQVNDVVGEVYNPISGQWLWSK 263 (282)
T ss_pred HHHhcCcchhhhhccccccccceeEecc
Confidence 33444555666666555444
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=132.66 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=87.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||||||+|.++..+++. +..+++|+|+|+.|++.++++. +++.+..+|+..+. ++++||+|+++.++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCccEEEEccChh
Confidence 44568999999999999999876 4458999999999999999876 57899999998764 456999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+ .+...+++++.++|||||.+++..
T Consensus 105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99 788999999999999999997753
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=131.79 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=88.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+++++|+|+.|++.|+++.... .+++++++|+.+++ ++ .+|+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--CCCEEehh
Confidence 3468999999999999888762 4458999999999999999988532 47999999998877 54 49999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++||+ +..+...++++++++|||||.+++.+.
T Consensus 133 ~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999998 445678999999999999999999874
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=136.64 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--c-CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--E-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~-~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.+...|+|+|.|+.++..++... . ...++.++.+|+++++ + +++||+|++.++++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChhh
Confidence 4689999999999999999987767999999999997654432 2 2357999999999998 6 78999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .++..++++++++|||||.+++.+.
T Consensus 201 H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 201 HR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99 8889999999999999999987653
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=142.25 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=93.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||||||+|..+..+++....+++|+|+|+.+++.|+++.... .+++|.++|+.+.+ +++++||+|++..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCcccc
Confidence 34689999999999999888864458999999999999998877543 57899999999888 88889999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .+..+++++++++|||||.+++.++.
T Consensus 345 ~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 345 I-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 9 88999999999999999999988764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=125.05 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|++.++++|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~vL~h 117 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGVLIH 117 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECChhhh
Confidence 3458999999999999999886 4568999999999999999876 567889999988 7 88999999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+ ++.+..++++++.|++ ++.+++.++-.|
T Consensus 118 l-----~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 118 I-----NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred C-----CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 8 5578899999999997 568878776443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=134.38 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=92.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++. +..+++++|.|+.|++.|+++.. ..+++++.+|+.+++ +++++||+|++..++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP-FPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC-CCCCceeEEEEcChhhh
Confidence 3468999999999999888775 44589999999999999998754 257899999999988 88899999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+ .+...++++++++|||||.++++....+
T Consensus 191 ~-------~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 191 W-------PDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred C-------CCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 8 7788999999999999999988764433
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-17 Score=128.26 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=89.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++. +..+++|+|+|+.|++.|+++.+.. .+++++++|+.+++ ++ .+|+|++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEEeee
Confidence 4468999999999999999874 3558999999999999999887542 46899999999887 54 48999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.++||+ +..+...++++++++|||||.+++.+..
T Consensus 130 ~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 999998 5567889999999999999999988753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=131.05 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=88.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++++...|+...+ + +++||+|++..++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhh
Confidence 345899999999999999999876 8999999999999998876432 36888888887765 4 678999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ +.++...+++++.++|||||+++++.
T Consensus 197 l-----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 197 L-----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred C-----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 55688999999999999999977654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=127.65 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=92.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.. +++.++.+|+.+.+ +++++||+|++..+++|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhhc
Confidence 4689999999999999998873 3469999999999999988775 47899999999988 888999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++.++..
T Consensus 112 -------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 112 -------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 888999999999999999999877654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=121.52 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=85.2
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.....+|||+|||+|.++..+.+.+. +++|+|+++.+++. .++.....+....+ .++++||+|+++.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccccchhhHhhHHHHh
Confidence 45667999999999999999988887 99999999999988 23444544444444 6788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
|+ .++..+++++.++|||||++++.+....
T Consensus 90 ~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 90 HL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp GS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 99 8999999999999999999999887653
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=131.79 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=86.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHh---hcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMK---YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++..+...|+|+|.|+.|+.+++.. .....++.+..+++.+++ . .++||+|++.++++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGVLY 199 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcchhh
Confidence 468999999999999999888766799999999999865432 222357888999999887 4 35899999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .++..++++++++|||||.+++.+.
T Consensus 200 H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 200 HR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred cc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 99 8889999999999999999988654
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.4e-19 Score=119.85 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=63.3
Q ss_pred EEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC--CcEEEEcccCCCC-CCCCCcccEEEECCccchhc
Q 028385 12 CRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~ 87 (210)
||+|||+|.++..+++. +..+++++|+|+.|++.++++..+.. +......+..+.. ....++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999887 45589999999999988888875442 2333333333321 1123699999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
++...++++++++|||||++
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 89999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=129.52 Aligned_cols=105 Identities=12% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. + ..+|+++|+++.|++.|+++... .+++++..+|+.+++ +++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCc
Confidence 3458999999999988777664 3 23799999999999999987643 368899999999988 88889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++. .+..+++++++++|||||++++.++.
T Consensus 156 ~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLS-------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCC-------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9988 77889999999999999999987653
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-17 Score=121.88 Aligned_cols=107 Identities=21% Similarity=0.331 Sum_probs=87.5
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
+....+++||+|||.|..+..++++|+ .|+++|+|+.+++.+++..+. .-+++..+.|+.+.. ++ +.||+|++..+
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~-~~-~~yD~I~st~v 103 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD-FP-EEYDFIVSTVV 103 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--T-TTEEEEEEESS
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc-cc-CCcCEEEEEEE
Confidence 445678999999999999999999999 899999999999988776632 235889999998877 54 68999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++++ .++...++++++...++|||++++.++
T Consensus 104 ~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 104 FMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp GGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 9988 678889999999999999999988664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=123.28 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=89.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~~~ 72 (210)
..++|||+|||.|..+..++++|. +|+|+|+|+.+++.+.+... ...++++.++|+.+++....+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 346999999999999999999998 89999999999998644321 124689999999887611246
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.||.|++..+++|+ +......+++.+.++|||||.+++.++.
T Consensus 113 ~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 79999999999998 7788899999999999999987777654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=121.01 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=86.6
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
|...-.++||+|||.|.++..|+... .+++++|+|+.+++.|+++....++|+|.+.|+.+. .+.++||+|+++.++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~--~P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF--WPEGRFDLIVLSEVL 116 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-G
T ss_pred CccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC--CCCCCeeEEEEehHh
Confidence 34444679999999999999999885 489999999999999999999889999999999775 478999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++ .+.+++..++.++...|+|||.+++.+..
T Consensus 117 YYL----~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 117 YYL----DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp GGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HcC----CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 988 12357889999999999999999998754
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=119.31 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=91.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|..+..+++. +..+|+++|.++.|++.|+++.+.. ++++++++|+.+++ . +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEEEcc---
Confidence 468999999999999988864 5568999999999999999887443 56999999999987 5 77999999864
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+ .++..++++++++|||||++++............. ....+|.+.
T Consensus 121 -~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~-~~~~~~~~~ 165 (187)
T PRK00107 121 -V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAEL-PKALGGKVE 165 (187)
T ss_pred -c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHH-HHhcCceEe
Confidence 2 45678999999999999999888654333333222 233467753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=123.25 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=93.2
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
|.....+|.|+|||+|..++.++++ +...++|+|.|++|++.|+++. ++++|..+|+.++. +...+|+++++.+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~dllfaNAv 101 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPTDLLFANAV 101 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCccchhhhhhh
Confidence 5566678999999999999999987 6679999999999999998887 88999999999986 7789999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++ ++..+++.++...|.|||.+.+.-
T Consensus 102 lqWl-------pdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 102 LQWL-------PDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhc-------cccHHHHHHHHHhhCCCceEEEEC
Confidence 9999 999999999999999999997643
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-16 Score=125.84 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=95.9
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+..+|||||||.|.++..+++.-..+|+|+++|+++.+.++++... . .++++...|..++. +.||-|++.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvg 145 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVG 145 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehh
Confidence 345678999999999999999998545999999999999999997743 3 48999999988865 3499999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
+++|+ +.++...+++.++++|+|||.+++.+++.+..
T Consensus 146 mfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 146 MFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred hHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 99999 66889999999999999999999988877653
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=124.34 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=88.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|||||||+|.++..+++. +..+++|+|+|+.+++.++++.+.. +++++...|+...+ ++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 6999999999999999876 3458999999999999999987432 57899999997766 54 58999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .+...++++++++|||||.+++.++.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9 78899999999999999999988753
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=125.76 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCCCEEEeCCCCch----hHHHHHHc-C-----CCcEEEEeCCHHHHHHHHHhhcC------C-----------------
Q 028385 7 GTRDTCRRAAPSIV----MSEDMVKD-G-----YEDIVNIDISSVAIDMMKMKYEE------I----------------- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~----~~~~l~~~-~-----~~~v~~vD~s~~~~~~a~~~~~~------~----------------- 53 (210)
...+|+|+|||+|. ++..+++. + ..+|+|+|+|+.|++.|++.... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 44455443 1 23799999999999999986410 0
Q ss_pred ------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 ------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++.|.+.|+.+.+ ++.++||+|+|.++++|+ +.++..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 36899999999987 678899999999999998 55678899999999999999998754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=117.05 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++.. +..+|+++|.|+.|++.++++.+. .++++++++|+.+++ ..++||+|++.. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 568999999999999988765 345899999999999998877643 357999999998865 367999999865 33
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 137 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~ 137 (210)
+....++.+.++|||||.+++..-................|.+
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~ 162 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGV 162 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCc
Confidence 3456788889999999999877533333333333233333444
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=121.67 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=92.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc-CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++. +..+++++|+++.+++.++++.. ..+++.+...|+.+.+ +++++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEech
Confidence 34568999999999999999876 34589999999999999998732 2367899999999888 88899999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ .+...+++++.++|||||.+++.++
T Consensus 97 ~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 97 LQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 9999 8899999999999999999988764
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=125.45 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||.|.++..+++. +. +|+|+++|++..+.++++.... .++++...|..+++ .+||.|++..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~----~~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP----GKFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----CCCCEEEEEe
Confidence 34568999999999999999998 55 8999999999999999988544 46899999998876 2999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++|+ +..+...+++++.++|||||.+++..++.+.
T Consensus 136 ~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 136 MFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp EGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred chhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99999 6788999999999999999999886665433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=132.75 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=90.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC--CCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++... +++|+|+++.|++.+++.....+++.++++|+.+ ++ +++++||+|++..+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHH
Confidence 345899999999999999998754 8999999999999887655444789999999964 56 7889999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ +.....++++++.++|||||++++.+.
T Consensus 115 ~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YL-----SDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 98 445578999999999999999988764
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=117.28 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCCCCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~~~~ 73 (210)
..+|||+|||.|..+..++++|. +|+|+|+|+.+++.+.+... ...++++.++|+.+++......
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 46999999999999999999988 89999999999998743221 1256899999999875122358
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
||.|+...+++|+ +.+...++++.+.++|||||.++++++
T Consensus 117 fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~~ 156 (218)
T PRK13255 117 VDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVTL 156 (218)
T ss_pred eeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 9999999999998 778899999999999999997666443
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=117.96 Aligned_cols=108 Identities=26% Similarity=0.406 Sum_probs=94.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++... .+++++|+++.+++.++++.....++++..+|+.+.+ ++.++||+|+++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 457899999999999999988743 4899999999999999988753357899999999988 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++ .+...+++++.++|+|||.+++.++..+.
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 88 78899999999999999999998876543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=118.83 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
.+..+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++... +++.+...+...++ ..+++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEEC
Confidence 34568999999999999888752 2 24899999999999999887543 46788888887777 678899999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.++||+ +.++..++++++.|+++ |.+++.++..+
T Consensus 137 ~~lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999 33446789999999998 66667777665
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=132.32 Aligned_cols=112 Identities=24% Similarity=0.248 Sum_probs=91.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
+..+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++.... .++.++++|+.+++ .+++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4578999999999999888875 4568999999999999999876432 46788999998865 2678899999999999
Q ss_pred chhcc-C-----CCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~-~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|++.. . ..+..+..+++++++++|||||.+++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 87521 0 11346889999999999999999999874
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=118.83 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=94.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++.. ..+++++|+++.+++.++++... ..++.+..+|+.+.+ +..++||+|++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 34689999999999999998874 36899999999999999998754 257899999999887 7788999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++++ .+...+++++.++|+|||.+++.++..+.
T Consensus 130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99988 78899999999999999999988776543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=126.63 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=88.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.+. .++++...|..++ +++||.|++..+++|+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~l----~~~fD~Ivs~~~~ehv 241 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRDL----NGQFDRIVSVGMFEHV 241 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhhc----CCCCCEEEEeCchhhC
Confidence 3458999999999999999886444899999999999999998854 3578888887654 3689999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+..+...+++++.++|||||.+++.+++.+
T Consensus 242 -----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 242 -----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred -----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 556788999999999999999998876543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=121.56 Aligned_cols=96 Identities=25% Similarity=0.378 Sum_probs=79.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C---CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G---YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~---~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++. +++.|.++|+.++| +++++||+|++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~sfD~I~~~~~ 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQSLDAIIRIYA 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCceeEEEEecC
Confidence 3467999999999999998765 2 236999999999999998875 67899999999999 99999999998543
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
- ..++++.|+|||||++++++.+.
T Consensus 161 ~--------------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P--------------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C--------------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 23578999999999999887543
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=104.07 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.+. .++++++..|+........++||+|++....+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 358999999999999999886 446899999999999999987643 35788998987753213346899999866543
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+++++++++|||||.+++..
T Consensus 100 ----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=116.31 Aligned_cols=112 Identities=19% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEccc-CCCC-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV-RDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~-~~~~-~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|..+..+++. +..+++++|+|+.+++.++++... .+++.++++|+ ..++ .+++++||+|++.+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 468999999999999999876 455899999999999999987743 36899999999 6543 256789999998654
Q ss_pred cchhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+... ..........+++++.++|||||.+++.+..
T Consensus 121 ~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 121 DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 322100 0001113578899999999999999887643
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=110.61 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=86.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .++.++.+|+.+.. .++||+|+++..+++.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCCC
Confidence 35799999999999999998876 8999999999999999887432 46788999986643 4589999999887655
Q ss_pred ccC--------------CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCG--------------TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~--------------~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
... ..+.....++++++.++|||||.++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 211 1122236788999999999999998877553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=110.14 Aligned_cols=108 Identities=21% Similarity=0.320 Sum_probs=84.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++... .+|+++|+++.+++.++++.+.. .+++++..|+.+. .++++||+|+++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--LPDGKFDLIVSNPPF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--CCTTCEEEEEE---S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--ccccceeEEEEccch
Confidence 456899999999999999998744 36999999999999999987533 4489999998764 457899999999886
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.- .........+++++..++|||||.++++..
T Consensus 109 ~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcc--cccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 543 112334678999999999999999976553
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=120.21 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|.++..+++. +..+|+++|.|+.|++.++++.+.. .++++...|+... ++.++||+|+++.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~~~~fDlIlsNP 306 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VEPFRFNAVLCNP 306 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CCCCCEEEEEECc
Confidence 358999999999999999886 4568999999999999999887422 3678888887542 3456899999998
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|.... .+.....+++++++++|||||.++++.
T Consensus 307 Pfh~~~~--~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCcc--CCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 8875311 133456789999999999999998884
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=8e-15 Score=109.33 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=82.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||.|.+...+.+....+.+|+|++++.+..+.++ .+.++++|+.. ++.|++++||.||.+.+|.++
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 468999999999999999887556899999999999988875 47899999988 435999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.++.++|+|+.|+ |... ++++.+
T Consensus 89 -------~~P~~vL~EmlRV---gr~~-IVsFPN 111 (193)
T PF07021_consen 89 -------RRPDEVLEEMLRV---GRRA-IVSFPN 111 (193)
T ss_pred -------hHHHHHHHHHHHh---cCeE-EEEecC
Confidence 9999999999887 3344 555543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-15 Score=112.13 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=84.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCC--CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS--FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~ 81 (210)
...+|||||||+|.++..+++. +..+++|+|+++.+++.|+++... ..|+.++++|+.+++ .++++++|.|+.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3458999999999999999886 556899999999999999887643 368999999998643 14567999999876
Q ss_pred ccchhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
...+..-. ...+-....+++++.++|||||.+++.+-..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 54332000 0001112578999999999999998876443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=111.72 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=83.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.... .++.+.++|+.+.+ ++||+|++..++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~l 129 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDVL 129 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhHH
Confidence 456899999999999999988765 8999999999999999987432 37899999987653 789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+|+ +..+...+++++.+++++++.+.+
T Consensus 130 ~~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 130 IHY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HhC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 887 556788999999999987655543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=110.46 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++.... .++++..+|+.+.. ...++||+|++..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVTA 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEcc
Confidence 4468999999999999888875 2 348999999999999999887433 35899999998754 3467999999988
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++++ .+++.+.|||||++++..
T Consensus 151 ~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchh-------------hHHHHHhcCcCcEEEEEE
Confidence 87766 246889999999997653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=114.67 Aligned_cols=104 Identities=14% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCchhHHHHHH--c-CCCcEEEEeCCHHHHHHHHHhhcC---C-CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK--D-GYEDIVNIDISSVAIDMMKMKYEE---I-PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~--~-~~~~v~~vD~s~~~~~~a~~~~~~---~-~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
+..+|+|||||.|.++..+.. . +..+++++|+++++++.|++.... . ++++|.++|+.+.. -..+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 567899999998855544432 2 455899999999999999998842 2 57999999998864 33578999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. +++++ ..++..++++++.+.|+|||.+++.+
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 77776 45789999999999999999998876
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=116.07 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||||||+|.++..+++. +..+++++|. +.+++.++++.... ++++++.+|+.+.+ ++. +|+|+.+.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CCC--CCEEEeEh
Confidence 34468999999999999999887 4558999997 78999998876432 57999999998755 543 69999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|++ +.....++++++++.|||||++++.++.
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99877 4456688999999999999999999863
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-14 Score=116.43 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=84.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.++|||+|||+|.++..+++. +..+++++|+|+.|++.++++.+.. ....+...|+... ..++||+|+++..+|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccC
Confidence 458999999999999999886 4458999999999999999877543 2456777776542 3578999999998885
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.. ........++++++.+.|||||.++++.-
T Consensus 274 g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GI--QTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred Cc--cccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 21 11235778999999999999999988763
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=109.66 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||||||+|.++..+++.. ..+|+++|+++.+++.++++.+. ..+++++++|+.... ...+.||+|++...
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~~~~~ 154 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIYVTAA 154 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEEECCC
Confidence 44689999999999999888762 24899999999999999998753 367999999998765 56789999998776
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+++ .+.+.+.|||||++++..
T Consensus 155 ~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccc-------------hHHHHHhhCCCcEEEEEE
Confidence 5544 346777899999987753
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-14 Score=108.58 Aligned_cols=111 Identities=15% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..++++ ...++++||+++.+.+.|+++.+.. .++++++.|+.++. .....+||+|+|+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 3679999999999999999988 5469999999999999999988543 68999999999965 24455799999998
Q ss_pred ccchhccCC-C----------chHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGT-N----------APISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~-~----------~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+....... . ..-+.+..++...++|||||.+.++.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 876542220 0 11257788999999999999998886
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=101.59 Aligned_cols=109 Identities=20% Similarity=0.309 Sum_probs=85.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..+++.+..+++++|+++.+++.++.+.... .+++++++|+.+.. .+++++||+|+++..+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 479999999999999999887559999999999999999988532 57999999998853 36789999999987765
Q ss_pred hhc-cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLM-CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~-~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... ...........+++++.++|||||.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 321 111223356789999999999999998875
|
... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=106.78 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=73.8
Q ss_pred EEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhcc
Q 028385 34 VNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 108 (210)
Q Consensus 34 ~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lk 108 (210)
+|+|+|++|++.|+++... ..+++|+++|+.++| +++++||+|++..+++++ .+..+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876531 247999999999999 999999999999999998 889999999999999
Q ss_pred CCcEEEEEEcCCchhh
Q 028385 109 PGGIYMLITYGDPKAR 124 (210)
Q Consensus 109 pgG~~~~~~~~~p~~~ 124 (210)
|||.+++.++..+...
T Consensus 73 pGG~l~i~d~~~~~~~ 88 (160)
T PLN02232 73 PGSRVSILDFNKSNQS 88 (160)
T ss_pred cCeEEEEEECCCCChH
Confidence 9999999999876543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=107.28 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=91.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--------------CCCCcEEEEcccCCCCCCC--
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--------------EIPQLKYLQMDVRDMSFFE-- 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~v~~~~~d~~~~~~~~-- 70 (210)
...+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+... ...++++.++|+.+++ ..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~-~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP-KIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC-cccc
Confidence 346999999999999999999999 79999999999999866321 1247899999999876 21
Q ss_pred -CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 71 -DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 71 -~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+.||+|+...+++++ +.+...++.+.+.++|+|||.++++++.
T Consensus 121 ~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 121 NLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 3689999999999999 7889999999999999999999888763
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.8e-14 Score=111.13 Aligned_cols=106 Identities=21% Similarity=0.322 Sum_probs=88.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++.+. +++++|+++.+++.++++.... .++.+...|+.+.+...+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 3456899999999999999988765 7999999999999998876432 3577888888775423457999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...+++++.++|+|||.+++....
T Consensus 126 ~~-------~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HV-------PDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred cc-------CCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 98 78889999999999999999887654
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-14 Score=110.17 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=89.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCC-CCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE-DESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++++|.++.+++.++++.... .++.+...|+.+.+ .. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA-EKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-cCCCCCccEEEehhHH
Confidence 356899999999999999888765 7999999999999999877433 25889999988766 33 4789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .+...+++++.++|+|||.+++.....
T Consensus 123 ~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-------PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999 888999999999999999998776543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=111.82 Aligned_cols=103 Identities=22% Similarity=0.252 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHH--hhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKM--KYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~--~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|..+..|+..+.+.|+|+|.++....+.+. ++-+ ...+.+....++++| . .+.||+|++.++|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCCcCEEEEeeeh
Confidence 346899999999999999999998899999999987766433 3322 233455556788888 5 7899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.|. .++...|.+++..|++||.+++-+.
T Consensus 193 YHr-------r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 193 YHR-------RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred hcc-------CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 999 9999999999999999999987554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-14 Score=113.25 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+++|+++.+++.|+++.... .++.+...+.. + ..+++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~-~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--Q-PIEGKADVIVANILA- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--c-ccCCCceEEEEecCH-
Confidence 3689999999999999988887778999999999999999887432 24555655532 2 346789999997653
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....++.++.++|||||.+++..+.
T Consensus 236 ---------~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 ---------EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ---------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 34467899999999999999887654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-14 Score=105.76 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=93.1
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEEC
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDK 80 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~ 80 (210)
+.|.....=|||||||+|..+..+.+.|. ..+|+|+|+.|++.|.++.- .-.++.+|+-. +| |..++||.+|+.
T Consensus 45 alp~~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~---egdlil~DMG~Glp-frpGtFDg~ISI 119 (270)
T KOG1541|consen 45 ALPGPKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL---EGDLILCDMGEGLP-FRPGTFDGVISI 119 (270)
T ss_pred hCCCCCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh---hcCeeeeecCCCCC-CCCCccceEEEe
Confidence 44555566799999999999998888785 89999999999999997431 13567777766 67 999999999998
Q ss_pred Cccchhcc----CCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 81 GTLDSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 81 ~~l~~~~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
..+.|+.- ...+...+..++..++.+|++|++.++.-|......
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred eeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 88876532 235666677889999999999999988877654433
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=105.10 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. +..+++++|+++.+++.++++... ..+++++++|+.. + + .++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~-~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E-L-PGKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h-c-CcCCCEEEECCCc
Confidence 4568999999999999999876 345899999999999999987643 2578999988742 3 3 3589999987654
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++ ...+++++.++|||||++++...
T Consensus 108 ~~----------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 108 GN----------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred cC----------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 33 35678899999999999977543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-14 Score=108.35 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=78.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++... .+|+++|+++.+++.|+++.... .+++++++|+.... ...++||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEEcCC
Confidence 446899999999999999988632 35999999999999999987543 68999999998754 34568999998766
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++ .+.+.+.|||||++++..
T Consensus 156 ~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccc-------------cHHHHHhcCcCcEEEEEE
Confidence 5544 356788999999997753
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=106.83 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=77.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +...|+++|+++.|++.+.++.+..+|+.++.+|+.+. ..+ .++||+|++..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d~ 149 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVIYQDV 149 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEEEECC
Confidence 34568999999999999999886 33479999999999998877765557899999998752 112 35699998542
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.. ......++++++++|||||.+++.
T Consensus 150 ~~---------p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 AQ---------PNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CC---------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 21 123456789999999999999883
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-14 Score=108.57 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=83.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+..+++++|+++.+++.++++.... .++.++.+|+.+. +++++||+|+++..+...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCCCCC
Confidence 4689999999999999998876568999999999999999876432 3578888888763 457799999998654321
Q ss_pred c--------------cCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 M--------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~--------------~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .+.........+++++.++|||||+++++.-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 0 1112233467889999999999999987643
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=103.80 Aligned_cols=103 Identities=20% Similarity=0.201 Sum_probs=77.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi 78 (210)
..+|||+|||+|.++..+++.. ...|+++|+++ | ...++++++++|+.+.+ .+.+++||+|+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~ 122 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVM 122 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEe
Confidence 3579999999999999998862 34899999998 1 12367999999999852 15678999999
Q ss_pred ECCccchhccCCCchH------HHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 79 DKGTLDSLMCGTNAPI------SASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~------~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+..+.++. +..... ....+++++.++|||||.|++..+...
T Consensus 123 S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 123 SDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred cCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 98765542 111111 135789999999999999998776543
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=107.44 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.|+++.... .++.+..+|+ + ..+++||+|++..++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~-~~~~~fD~v~~~~~l 137 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---E-SLLGRFDTVVCLDVL 137 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---h-hccCCcCEEEEcchh
Confidence 446899999999999999998866 6999999999999999987432 4688999884 3 346789999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGI 112 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~ 112 (210)
+|+ +.+....+++++.+.+++++.
T Consensus 138 ~~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 138 IHY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hcC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 887 456788999999997754443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=111.63 Aligned_cols=96 Identities=15% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.+.. .++.|...|+.++ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEE
Confidence 346899999999999999999875 8999999999999999987432 3578888887543 478999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
..+++|+ +......+++.+.++ .+||.+
T Consensus 219 ~~vL~H~-----p~~~~~~ll~~l~~l-~~g~li 246 (315)
T PLN02585 219 LDVLIHY-----PQDKADGMIAHLASL-AEKRLI 246 (315)
T ss_pred cCEEEec-----CHHHHHHHHHHHHhh-cCCEEE
Confidence 9999887 445566777777764 555554
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=91.17 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=84.1
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccch-h
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS-L 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~-~ 86 (210)
+|+|+|||+|..+..+++....+++++|.++.+++.+++... ...++++...|+.+......++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988555689999999999999984332 2367899999998865125678999999999987 5
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....+++.+.+.|+|||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78999999999999999999765
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=108.50 Aligned_cols=108 Identities=14% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
+..+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.... .+++++++|+.+. +++++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 3468999999999999999986 3458999999999999999987532 4689999998652 45568999999743
Q ss_pred cch------h------------ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDS------L------------MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~------~------------~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
... + ..+.++......+++++.++|+|||++++-
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 0 112233455688899999999999998653
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=113.52 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=85.8
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC-CCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||||||+|..+..+++. +...++|+|+++.+++.+.++... ..|+.++++|+..+ ..++++++|.|++++..-
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdP 203 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPVP 203 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCCC
Confidence 47999999999999999986 556899999999999999888743 47899999999764 127889999999865543
Q ss_pred hhccCCCc-hHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNA-PISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~-~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|. ..+. +-....+++++.|+|+|||.+.+.+-..
T Consensus 204 W~--KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 204 WD--KKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred cc--ccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 32 0000 0123688999999999999998877443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=105.77 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=75.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.....++|+|+|+.+++.++++ +++++++|+.+ ++.+++++||+|+++.+++|+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 358999999999999988876555789999999999988653 47888999876 322677899999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKP 109 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~Lkp 109 (210)
.+...+++++.|++++
T Consensus 89 -------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 -------RNPEEILDEMLRVGRH 104 (194)
T ss_pred -------cCHHHHHHHHHHhCCe
Confidence 8899999999887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=104.75 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=78.7
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.....+|||+|||+|.++..+++... +++++|+++.+++.++++.+. ..++++..+|..+.. ...++||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccC
Confidence 34557899999999999988877654 899999999999999988753 357899999986643 23578999999876
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++++ .+++.+.|+|||.+++...
T Consensus 154 ~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 6554 3467889999999977653
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-14 Score=106.10 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=90.1
Q ss_pred CEEEeCCCCchhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 10 DTCRRAAPSIVMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
+|||+|||.|.....+++.. .-.++++|.|+.+++..+++..-. .++...+.|+.... ....+++|+|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 79999999999999998862 247999999999999999876432 45555566665521 266889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
|.++ +++....++++++++|||||.+++.+|+.-+
T Consensus 154 LSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 154 LSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred Eecc-----ChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 9998 7789999999999999999999999998754
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=111.18 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=79.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CCC--cEEEEcccCC-CCCCCCC----cccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IPQ--LKYLQMDVRD-MSFFEDE----SFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-~~~--v~~~~~d~~~-~~~~~~~----~fD~V 77 (210)
..+|||+|||+|..+..+++.. ..+|+++|+|++|++.++++... .++ +.++++|+.+ .+ ++.. ...++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEEE
Confidence 3579999999999999998873 34899999999999999988643 244 5678999987 33 3332 23344
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++..+++++ ++.+...++++++++|+|||.+++.
T Consensus 143 ~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 444566666 6678899999999999999999764
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=107.91 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=82.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.+.. .+++++++|+.+. +++++||+|+++....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 57999999999999999876 4558999999999999999987532 4699999998652 3456899999974321
Q ss_pred h------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 85 S------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 85 ~------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. +..+.++......+++++.++|+|||.+++-
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 1122234456788999999999999999763
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=108.77 Aligned_cols=101 Identities=18% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC-cEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ-LKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~-v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
+..+|||+|||+|.++...++.|..+++|+|++|.+++.++++...+ +. ++....+....+ ..++||+|+++-..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--ENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--ccCcccEEEehhhH
Confidence 45689999999999999999999989999999999999999987432 21 223333333222 34699999997532
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....++...+.+.|||||++++.-.-
T Consensus 240 ----------~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 240 ----------EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ----------HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 44678999999999999999887543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-13 Score=99.71 Aligned_cols=109 Identities=21% Similarity=0.325 Sum_probs=83.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC--cEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ--LKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~--v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++.... .+ +.++.+|+.+. +.+++||+|+++..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~p 99 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNPP 99 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECCC
Confidence 34579999999999999999885 48999999999999998876422 22 88899988763 45668999998766
Q ss_pred cchh--------------ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSL--------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~--------------~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+... ..+..+......+++++.++|||||.+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 5321 01122344567899999999999999877653
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-13 Score=106.54 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.... ++. +...+. ..+.+||+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~----~~~~~~-~~~~~fD~Vvani~~--- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE----LNVYLP-QGDLKADVIVANILA--- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC----ceEEEc-cCCCCcCEEEEcCcH---
Confidence 45689999999999999888877767999999999999999887432 120 101112 122379999987542
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....++.++.++|||||.+++..+.
T Consensus 190 -------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 190 -------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred -------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 34567899999999999999987654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.6e-13 Score=108.94 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=87.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++...+..+. .++|+|+++.|++.++++.+. ..++.+.++|+.+++ +++++||+|+++..+.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPPYG 259 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCCCc
Confidence 345799999999999988777655 899999999999999988753 245889999999998 7788999999975543
Q ss_pred hhcc--CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMC--GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~--~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.-.. +........++++++.++|||||++++.....
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 2100 00112346899999999999999998776443
|
This family is found exclusively in the Archaea. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=109.57 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=83.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C----CCcEEEEcccCCCC---CCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I----PQLKYLQMDVRDMS---FFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~----~~v~~~~~d~~~~~---~~~~ 71 (210)
...+|||+|||.|.-+..+...+...++|+|++...++.|+++++. . -...|+.+|..... .+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5578999999999888888888788999999999999999999821 1 13467788776531 1333
Q ss_pred --CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 72 --ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 72 --~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..||+|-|.+++|+. ..+......+++++.+.|||||+|+.++..
T Consensus 142 ~~~~FDvVScQFalHY~---Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYA---FESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGG---GSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHh---cCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 599999999999986 236678889999999999999999877643
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=104.66 Aligned_cols=105 Identities=22% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------------CCCcEEEEcccCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------~~~v~~~~~d~~~~~~~~~~ 72 (210)
...+||..|||.|.....|+++|. +|+|+|+|+.+++.+.+.... ..+|++.++|+.+++.-..+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 445899999999999999999998 899999999999998543311 13678999999987622235
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+||+|+...+|+++ ++....+..+.+.++|||||.+++++
T Consensus 116 ~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp SEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 79999999999998 77899999999999999999954444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-13 Score=101.07 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=78.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+|+++|+++.+++.++++.+.. .++.++.+|+.+......+.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 3458999999999999988764 3358999999999999999886432 5789999998763212346899999854
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. . .+...+++++.++|||||++++.
T Consensus 120 ~---~-------~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 120 G---S-------EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred C---c-------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 2 2 45678899999999999999763
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=104.50 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=83.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+++.+++.++++... .++++++++|+.+ + +++++||+|+++..+.
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-P-LPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-c-CcCCceeEEEECCCCC
Confidence 358999999999999999886 445899999999999999988743 3578999999876 3 5678999999976543
Q ss_pred hhc-------------------cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLM-------------------CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~-------------------~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... .+.........+++++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 210 011122345688999999999999997654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=109.06 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=87.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCC-CCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF-EDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~-~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.|++.|+++.+.. .+++++++|+.+.. + ..++||+|+++....
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~-l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD-MPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc-cccCCCccEEEECCCCC
Confidence 358999999999999988865 5568999999999999999987543 47899999986643 3 245899999986541
Q ss_pred h------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE-cCCchhhHhhh
Q 028385 85 S------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHL 128 (210)
Q Consensus 85 ~------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~-~~~p~~~~~~~ 128 (210)
. +..+.++..-..++++++.+.|+|||.+++.. +.++......+
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVL 393 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHH
Confidence 1 11223455567789999999999999986532 23344443343
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=108.52 Aligned_cols=184 Identities=31% Similarity=0.423 Sum_probs=129.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-cCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
.++|.+|||+..++..+.+.|+..++.+|+|+..++.+..+. ...+...+...|+..+. |++++||+|+.++++|++.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCcccccc
Confidence 489999999999999999999999999999999999999887 44578999999999999 9999999999999999998
Q ss_pred cCCCchH---HHHHHHHHHHHhccCCcEEEEEEcC--CchhhHhhhcccccceEEEEEEecCCCCCCCCCCCCCCccccC
Q 028385 88 CGTNAPI---SASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSYLE 162 (210)
Q Consensus 88 ~~~~~~~---~~~~~l~~i~r~LkpgG~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 162 (210)
++....- .....+.+++|+|++||+++.+++. .|..+...+......|. +......+.. ..-+.
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~~e~~~~~p~G~----------~~~~~~s~~~-~l~~v 197 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRKPEWLFGSPGGS----------KQMNVSSSGE-RLAIV 197 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCCeeeeecCccch----------hhhhhhccCc-ceEEE
Confidence 7765554 6778899999999999999999985 44433222111111111 1111111110 11111
Q ss_pred CcccCCCCCCccccccCCCCceEEEEEEecCCcccCCCCccc
Q 028385 163 PVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPSYT 204 (210)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~~~~~~~~~~ 204 (210)
-...+.....+......+...++++.++......+.+.+...
T Consensus 198 ~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls 239 (482)
T KOG2352|consen 198 ALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILS 239 (482)
T ss_pred EeccCccccchHHhhhccccccceeecccccCChhhhhcccc
Confidence 122222233333444566777888888887766554444433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=106.00 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=83.1
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.... .+++++++|+.+ + +++++||+|+++....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~-~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-P-LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-c-CcCCCccEEEECCCCC
Confidence 58999999999999999886 3458999999999999999987432 349999999876 3 4455899999973221
Q ss_pred -------------h-----hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 -------------S-----LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 -------------~-----~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
| +..+.++......+++++.++|+|||++++-.
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 11233445678899999999999999986543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-13 Score=104.00 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=80.3
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-C--CcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-P--QLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~--~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..++..++|+|||+|.-++-++.+ +.+|+++|+|+.|++.|++..+.. . ...+...++.++. -.+++.|+|++-.
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQ 108 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhh
Confidence 445557899999999777777777 459999999999999998876432 1 2233334444443 3489999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCc-EEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG-~~~~~~~~ 119 (210)
++|++ +.+++.++++|+||+.| .+.+-.|+
T Consensus 109 a~HWF--------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 109 AVHWF--------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hHHhh--------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99998 78999999999997766 66666665
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=103.59 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=84.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-C-CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-E-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..++.. +..+++++|+|+.+++.++++.. . ..++.++.+|+.+. +.+++||+|+++..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~--~~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP--LPGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc--CCCCceeEEEECCC
Confidence 34568999999999999999886 34589999999999999999875 2 25789999998653 34678999999754
Q ss_pred cch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.. +..+..+......+++++.++|||||.+++.
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 321 1112334456788999999999999999764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=100.00 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=77.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCC-CCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.+. ..+++++.+|+.+ ++ .....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~-~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA-QLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh-hCCCCCCEEEEEC-
Confidence 4468999999999999988865 345899999999999999988743 2578999999865 22 2223457665421
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. .....+++++.++|+|||.+++....
T Consensus 118 ---~-------~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---G-------RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---C-------cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 1 34678999999999999999887754
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=102.64 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=84.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..++.. +..+++++|+++.|++.++++. +++.++++|+.+.. .+++||+|+++..+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKI 139 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCcccc
Confidence 468999999999999888775 3458999999999999999875 57899999998765 35689999999988875
Q ss_pred ccCCC-----------chHH--HHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 87 MCGTN-----------APIS--ASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 87 ~~~~~-----------~~~~--~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
...+. ..+. ..+.+....++|+|+|.++++--+.|.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~ 188 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY 188 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc
Confidence 22211 1111 367888889999999988776333343
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-12 Score=101.21 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
++|||+|||.|.++..+++. +..+++.+|+|..+++.++++...+ .+..+...|...- ..+ +||.|+++..+|.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~--v~~-kfd~IisNPPfh~ 236 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP--VEG-KFDLIISNPPFHA 236 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc--ccc-cccEEEeCCCccC
Confidence 49999999999999999987 5678999999999999999998543 3435666665442 233 9999999999984
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
= -.-...-.++++.+..+.|++||.+.++--+.+
T Consensus 237 G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l 270 (300)
T COG2813 237 G--KAVVHSLAQEIIAAAARHLKPGGELWIVANRHL 270 (300)
T ss_pred C--cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC
Confidence 2 001112345899999999999999988875443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.8e-13 Score=105.80 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=74.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++...++.|..+|+++|+++.+++.|+++.+.+ .. .+......+ ...++||+|+++-..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~---~~~~~~dlvvANI~~-- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSED---LVEGKFDLVVANILA-- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSC---TCCS-EEEEEEES-H--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecc---cccccCCEEEECCCH--
Confidence 3589999999999999999999989999999999999999988432 22 232222222 345899999997553
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+..++..+.++|+|||++++.-+-
T Consensus 236 --------~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 236 --------DVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp --------HHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred --------HHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 45678899999999999999886543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=100.69 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-CCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.+.. ++++.++|+.+. +....++||+|+++..+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 357999999999999998875 4458999999999999999987543 358899998763 2111357999999865421
Q ss_pred -------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 -------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 -------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+.+...-...++..+.++|||||++++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 11222334456789999999999999998664
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-12 Score=101.81 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=77.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++.- ...|+++|+++.|.+.+.+..+..+|+.++..|+... . ...++||+|++.
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~-~~~~~vDvV~~D 209 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR-MLVPMVDVIFAD 209 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh-cccCCCCEEEEe
Confidence 344589999999999999999872 3479999999987655555544447899999998652 2 234589999986
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.. .. .+...++.++.++|||||.|++.
T Consensus 210 va--~p-------dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 210 VA--QP-------DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CC--Cc-------chHHHHHHHHHHhccCCCEEEEE
Confidence 53 12 45667778999999999999883
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=103.79 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
..+||+||||+|..+..++++ +..+|+++|+++.+++.|++... +.++++++.+|+...-...+++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 458999999999999999987 55689999999999999998763 2368999999988742134678999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...-... ....--..++++.+++.|+|||++++.
T Consensus 157 D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 157 DSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 6432211 000112367789999999999998764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-12 Score=94.36 Aligned_cols=99 Identities=10% Similarity=0.110 Sum_probs=77.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+ .+++++|+++.+++.++++....++++++.+|+.+++ +++..||.|+++..++..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~~ 90 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNIS 90 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcccH
Confidence 34589999999999999999984 4899999999999999998865578999999999988 777789999998776532
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.+...+++++.. +.++|.+++
T Consensus 91 ------~~~i~~~l~~~~--~~~~~~l~~ 111 (169)
T smart00650 91 ------TPILFKLLEEPP--AFRDAVLMV 111 (169)
T ss_pred ------HHHHHHHHhcCC--CcceEEEEE
Confidence 233444443322 346777755
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=109.86 Aligned_cols=106 Identities=16% Similarity=0.218 Sum_probs=82.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++..+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCC
Confidence 357999999999999988865 5568999999999999999987432 4689999997642 345689999996533
Q ss_pred ch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.. +..+.++......+++++.++|+|||.+++
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 21 112334556678899999999999999875
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=95.93 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+ ..+++.++++|+.+.+ .+++++||+|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 3458999999999999988875 33479999999864 1257889999987632 1356789999
Q ss_pred EECCccchhc-cCC---CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLM-CGT---NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~-~~~---~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++....+... ... .......+++.++.++|+|||++++..+.
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 9865422100 000 01123578999999999999999886544
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.3e-12 Score=96.91 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=77.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++. +++.+..+|+...+ + +++||+||++..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCC
Confidence 469999999999999988864 2348999999999999999876 56899999998765 4 5689999999887
Q ss_pred chhccCC-----CchHHHHHHHHHHHHhccCCcE
Q 028385 84 DSLMCGT-----NAPISASQMLGEVSRLLKPGGI 112 (210)
Q Consensus 84 ~~~~~~~-----~~~~~~~~~l~~i~r~LkpgG~ 112 (210)
.-..... .+..-...++..+.+++++|+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 6443211 1223466788999997676664
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=102.68 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=76.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++... ..|+++|+++.+++.|+++.+. ..++.++++|+.... ...++||+|++...
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~~g 158 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVTVG 158 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEECCc
Confidence 446899999999999999988632 3699999999999999987743 367899999987765 44568999998765
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++++ ...+.+.|+|||.+++..
T Consensus 159 ~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 5443 334678999999987743
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=94.85 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=77.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
...|.|+|||.+.++..+. .+. .|...|.-. .+-.+..+|+.+.| +++++.|++|....|=.
T Consensus 73 ~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva-------------~n~~Vtacdia~vP-L~~~svDv~VfcLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA-------------PNPRVTACDIANVP-LEDESVDVAVFCLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH---S----EEEEESS--------------SSTTEEES-TTS-S---TT-EEEEEEES---S--
T ss_pred CEEEEECCCchHHHHHhcc-cCc-eEEEeeccC-------------CCCCEEEecCccCc-CCCCceeEEEEEhhhhC--
Confidence 4679999999999996653 233 699999754 23357889999999 99999999998666532
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcc--cccceEEEEEEecCCCCCCCCCCCCCCccccCCcc
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKW--KVYNWKIELYIIARPGFEKPGGCSSSMKSYLEPVP 165 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 165 (210)
.+....+.|..|+|||||.+.|.+..+.-.....+.. ...++... ....
T Consensus 135 ------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~--~~d~--------------------- 185 (219)
T PF05148_consen 135 ------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK--SKDE--------------------- 185 (219)
T ss_dssp ------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE--EEE----------------------
T ss_pred ------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE--eccc---------------------
Confidence 5899999999999999999999986542222222211 12333332 1111
Q ss_pred cCCCCCCccccccCCCCceEEEEEEecCCcccCCCCcccccc
Q 028385 166 ITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPSYTLKG 207 (210)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~y~~~~~K~~~~~~~~~~~~~~~~ 207 (210)
...+-+++.++|.........+..+||+
T Consensus 186 --------------~n~~F~~f~F~K~~~~~~~~~~~~~LkP 213 (219)
T PF05148_consen 186 --------------SNKHFVLFEFKKIRKKEPKKKPGLKLKP 213 (219)
T ss_dssp ---------------STTEEEEEEEE-SSS-TT---GG----
T ss_pred --------------CCCeEEEEEEEEcCcccccccCCccccc
Confidence 1123377888888877667777778876
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-11 Score=87.14 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=91.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
+..+-|||+|.|||.++..++.++. ..++.+++|+++.....+++ +.++++.+|+.++. .+.+..||.|+|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 3446799999999999999999854 47999999999999999888 66789999998864 367888999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.+-.+ +.....+.++.+...|.+||.++..+|+
T Consensus 124 ~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 124 GLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 8776655 6678889999999999999999999998
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-12 Score=94.49 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=81.1
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
.....+|||||||+|..+.-+++... +|+.+|..+...+.|+++.+.. .|+.+.++|...-- -+..+||.|+....
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~aPyD~I~Vtaa 147 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEEAPYDRIIVTAA 147 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCCCCcCEEEEeec
Confidence 34457899999999999999999865 8999999999999999998654 67999999998853 24589999999877
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+ -+.+.+.||+||++++..
T Consensus 148 a~~v-------------P~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 148 APEV-------------PEALLDQLKPGGRLVIPV 169 (209)
T ss_pred cCCC-------------CHHHHHhcccCCEEEEEE
Confidence 6655 344677889999998765
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=97.55 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=83.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|+|||+|+|.++..+++. +..+++..|. |.+++.+++ .++++++.+|+. -+ +|. +|+++.+++||.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f-~~-~P~--~D~~~l~~vLh~ 170 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF-DP-LPV--ADVYLLRHVLHD 170 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT-TC-CSS--ESEEEEESSGGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH-hh-hcc--ccceeeehhhhh
Confidence 4457999999999999999876 6668999997 888888888 489999999998 44 666 999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC--cEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG--GIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg--G~~~~~~~~ 119 (210)
+ +.++..++|+++++.|+|| |++++.+..
T Consensus 171 ~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 171 W-----SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp S------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred c-----chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 8 7789999999999999999 999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=101.01 Aligned_cols=105 Identities=23% Similarity=0.296 Sum_probs=85.9
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----C----CcEEEEcccCCCC-----CCCCCcccE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----P----QLKYLQMDVRDMS-----FFEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~----~v~~~~~d~~~~~-----~~~~~~fD~ 76 (210)
.++++|||-|.-+..+-+.+..+++|+||++..+++|++++.+. . .+.|+++|...-. .+.+.+||+
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDi 199 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDI 199 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcce
Confidence 58999999999988888888889999999999999999998543 1 3678889876521 145556999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|-|.+++|+. ..+.+....++.++.+.|||||+|+.+.
T Consensus 200 vScQF~~HYa---Fetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 200 VSCQFAFHYA---FETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred eeeeeeEeee---eccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 9999999864 2356788999999999999999996543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=98.73 Aligned_cols=109 Identities=11% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCC-CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDM-SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~ 82 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|++.... .++++++.+|+.+. . -..++||+|++..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~-~~~~~yD~I~~D~- 144 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA-VHRHSTDVILVDG- 144 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH-hCCCCCCEEEEeC-
Confidence 457999999999999988876 556899999999999999998742 26899999998763 2 2246899999753
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++.. +....-...++++++.+.|+|||++++..+..
T Consensus 145 ~~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 145 FDGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1111 00011123789999999999999998754443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=103.25 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=84.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC-CCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-FEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|..+..+++... .+|+++|+++.+++.++++.+.. .+++++++|+.+.+. +..++||.|++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3446899999999999999988632 58999999999999999988543 347899999987541 24578999997554
Q ss_pred cchhcc-CC-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. ... ....+++.++.++|||||.++..+++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 221100 00 011 22457899999999999999887764
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=103.84 Aligned_cols=113 Identities=16% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+.. .++.+.++|+.+++.+.+++||.|++...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 4458999999999999988875 3458999999999999999988543 56889999998764244678999998544
Q ss_pred cchhccCCC-c-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTN-A-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~-~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
......-.. + . ....+++.++.+.|||||.++..+++
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 322211000 1 0 13467899999999999999888876
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=90.16 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCC-cccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDE-SFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~ 82 (210)
...+++|||||||..+..++.. +..+++++|.++++++..+++..+ .+|+.++.+++-..- ++- +||.|+..+.
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L--~~~~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL--PDLPSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh--cCCCCCCEEEECCC
Confidence 3457999999999999999854 556899999999999999988754 489999999987742 222 7999997665
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+.+.+++.+...|||||++++.-..
T Consensus 112 -----------~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 112 -----------GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred -----------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 45688999999999999999775433
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=96.86 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. ....|+++|+++.+++.++++.+.. .++.+...|+..++ ...+.||.|++...
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcCC
Confidence 4468999999999999988875 2347999999999999999988543 57899999988766 45567999997543
Q ss_pred cchhcc-CC-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. ... ....++|+++.+.|||||+++..+++
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 221100 00 011 13456999999999999999887766
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=106.26 Aligned_cols=112 Identities=17% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++.+. . .+++++++|+.+...-..++||+|++....
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 468999999999999999998776899999999999999998843 2 368999999876320125689999986542
Q ss_pred chhcc----CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..-.- ......+...++..+.++|+|||.+++.+..
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11000 0012356788899999999999999776654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=98.35 Aligned_cols=104 Identities=14% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||+||||+|.++..+++.+ ..+++++|+++.+++.+++.... .++++++.+|+...-....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 3499999999999999988874 56899999999999999987632 2578888888765310235789999986
Q ss_pred CccchhccCCCchHH--HHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....- +... ..++++.+.++|+|||.+++.
T Consensus 153 ~~~~~~-----~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVG-----PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCC-----cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 542111 1112 468889999999999999775
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-11 Score=103.93 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=82.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++.+.. .+++++++|+.+.+ ++++||+|++...
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcCC
Confidence 3468999999999999888764 2348999999999999999888533 57899999998764 4578999996422
Q ss_pred cchhc-cCC-------CchH-------HHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLM-CGT-------NAPI-------SASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~-~~~-------~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
..... +.. .... ...+++.++.++|||||+++..+++-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 11000 000 0111 24578999999999999999988763
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=96.98 Aligned_cols=116 Identities=20% Similarity=0.291 Sum_probs=85.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccch-
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS- 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~- 85 (210)
+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++.... .++.++.+|+..- . .++||+|+++..+=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--c-CCceeEEEeCCCCCCC
Confidence 7999999999999999987 4458999999999999999988543 4556666665442 2 338999999855311
Q ss_pred -----------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEE-cCCchhhHhhh
Q 028385 86 -----------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHL 128 (210)
Q Consensus 86 -----------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~-~~~p~~~~~~~ 128 (210)
+..+.++.....+++.++.+.|+|||.+++-. +++.......+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 11222456678899999999999999886543 23444444444
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-12 Score=96.28 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||+|..+..++.. + ...|+++|+.+...+.|+++... ..|+.++++|..... -....||.|++..
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v~~ 149 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIVTA 149 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEEee
Confidence 34568999999999999999886 2 33699999999999999999863 468999999987743 3456899999987
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+ -..+.+.||+||++++.-
T Consensus 150 a~~~i-------------p~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 150 AVPEI-------------PEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp BBSS---------------HHHHHTEEEEEEEEEEE
T ss_pred ccchH-------------HHHHHHhcCCCcEEEEEE
Confidence 76554 344778899999997754
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=102.32 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC---CCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF---FEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~---~~~~~fD~Vi~ 79 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+.. .++.++++|+.+++. +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 3468999999999999999875 2348999999999999999988543 578999999987641 23578999997
Q ss_pred CCc------cchhccC--CCchH-------HHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGT------LDSLMCG--TNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~------l~~~~~~--~~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
... +.+-... ..... ...+++.++.++|||||+++..+++
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 532 2111000 00011 2578899999999999999877765
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-11 Score=101.35 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCCCCCC--CCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFF--EDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~--~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+++++|+++.+++.++++.+.. . .+.+..+|....+ . ..++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~-~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS-QWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc-ccccccccCEEEEc
Confidence 3468999999999999999875 4358999999999999999888543 2 2334666665544 2 46789999974
Q ss_pred Cc------cchhccCC--Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GT------LDSLMCGT--NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~------l~~~~~~~--~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.. +++..... ... ....+++.++.++|||||.++..+++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 32 22210000 011 12578999999999999999988876
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-11 Score=100.26 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=82.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCCC-CC--CCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMS-FF--EDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~~-~~--~~~~fD~Vi~~ 80 (210)
..+|||+|||+|.++...+..+..+|+++|+|+.+++.|+++... . .+++++++|+.+.. .+ ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 468999999999999877766666899999999999999998743 2 36899999997742 11 25689999987
Q ss_pred CccchhccCC----CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~----~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.....- .. ....+...++....++|+|||.++..+++
T Consensus 301 PP~f~~--~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 301 PPKFVE--NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CCCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 653211 00 01135667777889999999999887765
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-11 Score=93.17 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....++||||+|.|..+..++.. +.+|++.|.|+.|....+++- .+++ |..+.. -.+.+||+|.|.++|+-
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~kg-----~~vl--~~~~w~-~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKKG-----FTVL--DIDDWQ-QTDFKFDVISCLNVLDR 163 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhCC-----CeEE--ehhhhh-ccCCceEEEeehhhhhc
Confidence 35568999999999999999876 448999999999988777642 3333 444443 34568999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. ..+..+|+++++.|+|+|++++.
T Consensus 164 c-------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 164 C-------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred c-------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 8 88999999999999999998774
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=100.47 Aligned_cols=111 Identities=17% Similarity=0.257 Sum_probs=82.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|..+..+++. +..+++++|+++.+++.++++.+.. .++.++++|+.+.. .++ ++||+|++...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 457999999999999999875 3458999999999999999887533 56899999998753 133 78999998654
Q ss_pred cchhcc-CC-------CchH-------HHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GT-------NAPI-------SASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~-------~~~~-------~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... .. .... ....+++++.++|||||.++..+++
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 221100 00 0111 2356899999999999999876655
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-12 Score=98.75 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=79.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-CCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~ 86 (210)
-.++||+|||||..+..+..... +++|+|+|++|++.|.++-- --+..+.++..+- ...++.||+|++..++-++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred cceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 45799999999999998877644 89999999999999988641 1123344444321 1456789999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+++.++--+...|+|||.|.+..
T Consensus 202 -------G~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 202 -------GALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred -------cchhhHHHHHHHhcCCCceEEEEe
Confidence 899999999999999999998875
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=95.54 Aligned_cols=106 Identities=16% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCC-CCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~fD~Vi 78 (210)
...+||+||||.|.++..+++++ ..+++.+|+++.+++.+++.... .++++++.+|+... ...++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 35689999999999999999884 46899999999999999997642 26899999998653 212357899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+...-.+. ....--...+++.+++.|+|||++++
T Consensus 171 ~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 171 VDSSDPVG---PAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 85432211 00001235789999999999999965
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-11 Score=92.17 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=79.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CC----CCCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SF----FEDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~----~~~~~fD 75 (210)
.+..+|||+|||+|..+..++.. +..+++++|+++.+++.|+++.+.. .+++++.+|+.+. +. .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 34568999999999988888764 3458999999999999999988543 5789999999773 10 1246899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+|+... ....+..++..+.++|+|||.+++-
T Consensus 147 ~VfiDa----------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDA----------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 998642 2356778899999999999998763
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=95.85 Aligned_cols=108 Identities=11% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh--c-------CCCCcEEEEcccCCC-CCCCCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY--E-------EIPQLKYLQMDVRDM-SFFEDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~--~-------~~~~v~~~~~d~~~~-~~~~~~~fD 75 (210)
...+||++|||+|..+..+++.+ ..+|+++|+++++++.|++.. . ..++++++.+|+.+. . ...+.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~-~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS-SPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH-hcCCCcc
Confidence 34589999999999999998874 468999999999999999621 1 237899999999883 3 3456899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|++... +... .....---..+++.+++.|+|||++++..
T Consensus 229 VIIvDl~-DP~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFP-DPAT-ELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEEEcCC-Cccc-cchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998632 1110 00011123678999999999999986653
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.7e-11 Score=103.29 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=80.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHh--hc-------CCCCcEEEEcccCCCCCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMK--YE-------EIPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~--~~-------~~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
...+|||+|||+|..+..+++++. .+++++|+++++++.++++ .. +.++++++.+|+.+.-...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 346899999999999999998754 6999999999999999983 21 1268999999998732133578999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|++...-... .+ ...--..++++.+++.|||||.+++..
T Consensus 377 Ii~D~~~~~~-~~-~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSN-PA-LGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCC-cc-hhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9987432211 00 000112468899999999999997643
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-11 Score=92.45 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=89.5
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
..++||||+-|.+...+...+..+++.+|.|..|++.++......-.+....+|-+.++ |.++++|+|+++..+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~-- 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT-- 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh--
Confidence 35899999999999999998888999999999999999865432223567788988899 999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 89 ~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.++...+.+++..|||+|.|+..-++
T Consensus 151 -----NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 151 -----NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred -----ccCchHHHHHHHhcCCCccchhHHhc
Confidence 99999999999999999999765443
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-10 Score=88.42 Aligned_cols=106 Identities=11% Similarity=0.142 Sum_probs=81.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-C-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
.+..+.||.|||-|+.+..++..-+.+|..+|..+.+++.|++.... . .-.++.+..++++. ...++||+|.+.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhh
Confidence 34568999999999999988766677999999999999999987754 2 33578888888875 345799999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-|+ +..+..++|+++...|+|+|.+++-+
T Consensus 133 ghL-----TD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 133 GHL-----TDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp GGS------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC-----CHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 999 77999999999999999999998843
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=87.51 Aligned_cols=102 Identities=4% Similarity=-0.021 Sum_probs=74.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..++..+..+|+++|.++.+++.++++.+. ..++.++++|+.+.-....++||+|+++..+..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 358999999999999876666666999999999999999988743 357899999987632023457999999877432
Q ss_pred hccCCCchHHHHHHHHHHHH--hccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSR--LLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~~ 117 (210)
.-...+++.+.. +|+|+|.+++..
T Consensus 134 --------g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 134 --------GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred --------ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 123344454444 478988886554
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-11 Score=95.23 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...|||+|||+|.++...++.|..+|+++|.|.-+ +.|++....+ ..++++.+.++++. +|-++.|+|++-++=+
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhhhH
Confidence 35699999999999999999999899999988766 8887776433 45899999999987 8889999999965544
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++++ ..-+..++-.--++|+|||.++
T Consensus 139 ~Ll~----EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLY----ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHH----hhhhhhhhhhhhhccCCCceEc
Confidence 4322 2566777888889999999774
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-10 Score=88.43 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCchhH----HHHHH---c--C-CCcEEEEeCCHHHHHHHHHhh---------------------cC-C-
Q 028385 7 GTRDTCRRAAPSIVMS----EDMVK---D--G-YEDIVNIDISSVAIDMMKMKY---------------------EE-I- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~----~~l~~---~--~-~~~v~~vD~s~~~~~~a~~~~---------------------~~-~- 53 (210)
...+|+..||++|.=. ..+.+ . + .-+++|+|+|+.+++.|++.. .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999533 33333 1 2 137999999999999998621 00 0
Q ss_pred -------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 -------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 -------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|.|...|+.+.+ .+.+.||+|+|.++|-++ +.+...++++.+++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 46899999999833 467899999999999988 77888999999999999999997753
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-10 Score=89.14 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=79.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC-CC-CCCCCcccEEEECCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD-MS-FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~-~~-~~~~~~fD~Vi~~~~l~ 84 (210)
-+||||||.|.+...+++. +...++|+|+....+..+.++.. ...|+.++++|+.. +. .++++++|.|..++.==
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 5799999999999999876 66789999999999998888773 55899999999988 22 25678999998643311
Q ss_pred hhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|.-.. ..-+--...++..+.++|+|||.+.+.+-..
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~ 136 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE 136 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence 11000 0011134578999999999999998887443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=88.83 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
....+|||.|.|+|.++..++.. +..+|+..|+.++.++.|+++.+.. +++++..+|+.+.. +++ .||+|+..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~~-~vDav~LD 170 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DEE-DVDAVFLD 170 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-ccc-ccCEEEEc
Confidence 34568999999999999999964 5568999999999999999998653 45899999999875 444 99999952
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+ +++.+++.+++++|||||.+++..-
T Consensus 171 -----m-------p~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 171 -----L-------PDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -----C-------CChHHHHHHHHHHhCCCcEEEEEcC
Confidence 3 7899999999999999999977653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=89.06 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=71.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+...|.|+|||.+.++. ... ..|+..|.-. .+-.++.+|+.+.| +++++.|+++....|-
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a-------------~~~~V~~cDm~~vP-l~d~svDvaV~CLSLM-- 239 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SER-HKVHSFDLVA-------------VNERVIACDMRNVP-LEDESVDVAVFCLSLM-- 239 (325)
T ss_pred CceEEEecccchhhhhh---ccc-cceeeeeeec-------------CCCceeeccccCCc-CccCcccEEEeeHhhh--
Confidence 45679999999998875 222 3799999743 35578999999999 9999999998755542
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
-.++...+.+++|+||+||.++|.+..+
T Consensus 240 ------gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 240 ------GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred ------cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 2688999999999999999999998654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=104.62 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC------------------CCcEEEEcccCCCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI------------------PQLKYLQMDVRDMSFF 69 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------------------~~v~~~~~d~~~~~~~ 69 (210)
.+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++.+.. .+++|+++|+.+.. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC-R 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc-c
Confidence 47999999999999999886 4458999999999999999887421 36899999987643 1
Q ss_pred C-CCcccEEEECCccc--------------h------------h-cc----CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 70 E-DESFDAVIDKGTLD--------------S------------L-MC----GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 70 ~-~~~fD~Vi~~~~l~--------------~------------~-~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ...||+|+++-..- + . .+ +.++..-+.+++.+..++|||||.++ .+
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-FN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-EE
Confidence 1 23699999975421 0 0 11 25666778899999999999999886 44
Q ss_pred cC
Q 028385 118 YG 119 (210)
Q Consensus 118 ~~ 119 (210)
++
T Consensus 278 iG 279 (1082)
T PLN02672 278 MG 279 (1082)
T ss_pred EC
Confidence 44
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=87.07 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=75.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC------------------------------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP------------------------------ 54 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------ 54 (210)
.++..+|||||-+|.++..+++. +...+.|+||++..|+.|++..+...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35567999999999999999997 55679999999999999998764221
Q ss_pred -------CcEEEE-------cccCCCCCCCCCcccEEEECCccc--hhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 55 -------QLKYLQ-------MDVRDMSFFEDESFDAVIDKGTLD--SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 55 -------~v~~~~-------~d~~~~~~~~~~~fD~Vi~~~~l~--~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++.|.. .|+. . +....||+|+|-.+-- |+.. +.+.+.++++.++++|.|||++++
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~-~~~~~fDiIlcLSiTkWIHLNw---gD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--D-MIQPEFDIILCLSITKWIHLNW---GDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--h-hccccccEEEEEEeeeeEeccc---ccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111 1111 1 3456899999854432 3333 346789999999999999999965
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=91.96 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=80.8
Q ss_pred CCCCEEEeCCCCchhHH----HHHHc-C----CCcEEEEeCCHHHHHHHHHhh-------------------c------C
Q 028385 7 GTRDTCRRAAPSIVMSE----DMVKD-G----YEDIVNIDISSVAIDMMKMKY-------------------E------E 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~----~l~~~-~----~~~v~~vD~s~~~~~~a~~~~-------------------~------~ 52 (210)
+..+|+..||.||.=.- .+.+. + ..+|+|+|+|+.+++.|++.. + +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35799999999995332 23332 1 237999999999999998742 0 0
Q ss_pred -------C-CCcEEEEcccCCCCCCC-CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 53 -------I-PQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 53 -------~-~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. ..|.|.+.|+.+.+ ++ .+.||+|+|.+++.|+ +.+...++++++++.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~-~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQ-WAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCC-CccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0 45789999998755 43 6789999999999888 6788999999999999999988654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=84.46 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=62.9
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.|+|+|||||.++...+-.|...|+++|+++++++.++++.++. .++.|+++|+.+.. ..+|.|+.+..+-.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 59999999999999999888889999999999999999998654 57999999998865 57889998766543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-10 Score=83.93 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=73.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCC---CCCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDM---SFFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~---~~~~~~~fD~ 76 (210)
....+|||+|||+|..+..++.. +..+|+..|+++ .++.++.+.+. ..++.+...|..+. .....++||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 44568999999999999999988 666999999999 88988888743 25678888887551 1123568999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+...+++.- .....+++.+.++|+++|.+++..-
T Consensus 123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999876 8889999999999999999655543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-10 Score=94.49 Aligned_cols=99 Identities=8% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++.. .+|+++|+|+.|++.|+++.+ +..+++++++|+.+.- .+.+++||+|+++.
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 34589999999999999999876 489999999999999998874 3367999999987521 04457899999754
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.- ......++.+.+ ++|++.+++..
T Consensus 376 Pr----------~g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 PR----------AGAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CC----------cChHHHHHHHHh-cCCCeEEEEEe
Confidence 42 223455666655 58888876654
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=86.11 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=82.8
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEE-cccCCCC-CCCCCcccEE
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQ-MDVRDMS-FFEDESFDAV 77 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~-~d~~~~~-~~~~~~fD~V 77 (210)
..+..+|||||++.|..+..|+.. + ..+++.+|+++++.+.|+++.+.. +++.... +|+.+.- ....++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 446789999999999999999886 3 458999999999999999998543 4577777 4776632 1346899999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.. + .+.+...++..+.++|+|||.+++-.
T Consensus 137 FID----a------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 137 FID----A------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EEe----C------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 953 2 35688999999999999999997744
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=87.96 Aligned_cols=74 Identities=7% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|.++..+++.+. +++++|+++.+++.++++....++++++++|+.+++ ++ .||.|+++..++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 346899999999999999999854 899999999999999988765578999999999877 54 489999987754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.9e-10 Score=85.83 Aligned_cols=112 Identities=18% Similarity=0.171 Sum_probs=83.1
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-C-CCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-F-FEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~-~~~~~fD~Vi~~~~l 83 (210)
..+||||||.|.+...+|+. +...++|+|+....+..|.++..+. +|+.+++.|+..+- . +++++.|-|..++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 36899999999999999987 6678999999999998888887433 59999999998842 2 456699999864331
Q ss_pred chhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
=|.-.- ..-+--....++.+.++|||||.+.+.+-..
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 111000 0111235678999999999999999987443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=89.89 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|+++.+. ..+++|+++|+.++.....+.||+|+....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 4689999999999999999976 4899999999999999988743 367999999998754113457999997643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.5e-10 Score=87.70 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC----CCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF----EDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~----~~~~fD 75 (210)
.+..+|||||+++|..+..++.. ...+++.+|.+++..+.|+++++.. ++++++.+|+.+. +.+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 45568999999999999999874 2347999999999999999988543 5799999998763 211 136899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+|+... +..+...+++.+.++|+|||.+++-
T Consensus 197 ~VFIDa----------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDA----------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999542 3467899999999999999998764
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-09 Score=75.64 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.-+||||||+|..+.++++. +...+.++|++|.+++..++..+.. -+++.++.|+.+. ...++.|+++.+..+--
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~--l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG--LRNESVDVLVFNPPYVP 122 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh--hccCCccEEEECCCcCc
Confidence 34799999999999999886 4456899999999999877766432 4678899998774 34589999998754321
Q ss_pred --------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC--CchhhHhhh
Q 028385 86 --------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG--DPKARMIHL 128 (210)
Q Consensus 86 --------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~--~p~~~~~~~ 128 (210)
+.-|..++.-..+++..+-.+|.|.|+++++... .|.......
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l 181 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHH
Confidence 2344567778889999999999999999998765 455444433
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-09 Score=83.57 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCccc---EEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD---AVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD---~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++.+. +++++|+++.+++.++++....++++++.+|+...+ ++ .|| +|+++..
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCCcceEEEcCC
Confidence 3446899999999999999999875 799999999999999988755578999999999877 54 466 7887665
Q ss_pred cc
Q 028385 83 LD 84 (210)
Q Consensus 83 l~ 84 (210)
++
T Consensus 104 y~ 105 (253)
T TIGR00755 104 YN 105 (253)
T ss_pred hh
Confidence 43
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=87.35 Aligned_cols=75 Identities=8% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++++|+++.|++.++++... ++++++++|+.+++ +++-.+|.|+++..++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 345899999999999999999865 899999999999999987754 78999999999887 5442358888876643
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=82.94 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=79.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-C----CCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-S----FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~----~~~~~~fD~ 76 (210)
+..+||||||++|..+..+++. ...+++.+|.++...+.|++.++.. .+++++.+|+.+. + ....++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4568999999999999999985 2458999999999999999987532 5799999998763 2 112358999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+... ...++...+..+.++|+|||.+++-.
T Consensus 125 VFiDa----------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99643 24677889999999999999997643
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-09 Score=80.40 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCc-EEEEcccCCCC-CC------CCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQL-KYLQMDVRDMS-FF------EDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v-~~~~~d~~~~~-~~------~~~~fD~Vi 78 (210)
+|||||||||.-+..+++. +.....-.|+++......++... ..+|+ .-+..|+...+ .. ..++||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999999999987 55577788999888655555432 22333 23455666543 02 356899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.+++|-+ +....+.+++.+.++|++||.+++.
T Consensus 108 ~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 108 CINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 99999987 6689999999999999999999774
|
The function of this family is unknown. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-09 Score=82.67 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCCEEEeCCCCch----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhh-c---------------------C--
Q 028385 7 GTRDTCRRAAPSIV----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKY-E---------------------E-- 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~----~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~-~---------------------~-- 52 (210)
+..+|+-.||+||. ++..+.+.. ..+|+|+|+|..+++.|++-. . +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999994 333333332 247999999999999997521 0 0
Q ss_pred C-------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 53 I-------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 53 ~-------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ..|.|...|+..-+ +..+.||+|+|.+++-++ ..+...+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0 35788888887765 467789999999999888 77889999999999999999997754
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=80.25 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC---C-CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM---S-FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~---~-~~~~~~fD~Vi~~ 80 (210)
..|||+|||+|..+..++.. +.+.++++|.|+.++..|.++.... ..+.++..+++.- + ....+++|+++++
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecC
Confidence 36999999999999999876 6678999999999999999987433 5566665544432 1 2567899999998
Q ss_pred Cccch-------------------hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDS-------------------LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~-------------------~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..+-- +..+..+...+..++.-+.|.|+|||.+.+-..
T Consensus 230 PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 230 PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 65310 112224556777888899999999999866543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=85.24 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=78.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.... .++++++.+|+...-...+++||+|+..
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 458999999999999999886 456899999999999999988742 2789999999988421446789999975
Q ss_pred CccchhccCCCchHHHHHHHH-HHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLG-EVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~ 116 (210)
.. +....+....---.++++ .+.+.|+|||++++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111000000001245676 889999999998653
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.9e-09 Score=87.28 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=72.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+|||++||+|.++..++..+ .+|+++|+++.+++.|+++.+. ..+++|.++|+.+......+.||+|+....-..+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~ 313 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI 313 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence 579999999999999999776 4899999999999999988743 3579999999976430122469999976543211
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++++.+. .++|++.+++..
T Consensus 314 ---------~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 314 ---------GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ---------cHHHHHHHH-hcCCCeEEEEEe
Confidence 234445554 368988776654
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=78.11 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=72.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC-CC-CcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-ED-ESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~-~~-~~fD~Vi~~~ 81 (210)
..+|||++||+|.++..++.++..+|+++|.++.+++.++++.+.. .+++++++|+.+. ..+ .. ..||+|+...
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 4689999999999999999998878999999999999999887433 3688999999552 211 12 2478888765
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+.. ......-..+.+ ..+|+++|.+++-
T Consensus 130 Py~~-----~~~~~~l~~l~~-~~~l~~~~iiv~E 158 (189)
T TIGR00095 130 PFFN-----GALQALLELCEN-NWILEDTVLIVVE 158 (189)
T ss_pred CCCC-----CcHHHHHHHHHH-CCCCCCCeEEEEE
Confidence 5431 111222233333 3478888877544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.2e-09 Score=80.35 Aligned_cols=91 Identities=12% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCc-EEEEcccCCCC--C--CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--F--FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v-~~~~~d~~~~~--~--~~~~~fD~Vi~~~ 81 (210)
....|||+|||+|.++..+++.|..+|+++|+++.|+....+.. +++ .+...|+.... . ..-..+|+++.+.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPDFATFDVSFISL 151 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCCceeeeEEEeeh
Confidence 44579999999999999999998778999999998887622222 232 23444444322 0 1123567666432
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...+..+.++|++ |.+++.
T Consensus 152 ---------------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 152 ---------------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ---------------HhHHHHHHHHhCc-CeEEEE
Confidence 3358889999999 776554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-09 Score=90.40 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=71.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhh--cCC-CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKY--EEI-PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~--~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...|+|+|||+|.++...++.+ ..+|+++|-++.++...+++. .+. ++|+++.+|+++.. . ..+.|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~-l-pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVE-L-PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSC-H-SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCC-C-CCceeEEEE
Confidence 3569999999999998887753 458999999999888776652 333 68999999999987 3 459999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
=. +..+++. +-..+.+....|.|||||.++
T Consensus 265 El-LGsfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL-LGSFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ----BTTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred ec-cCCcccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 32 1222121 345567899999999999774
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=89.19 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=72.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC-CC--CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM-SF--FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~-~~--~~~~~fD~Vi~~~ 81 (210)
+..+|||+|||+|.++..+++... +|+++|+++.+++.|+++.. ...+++|+.+|+.+. +. +.+++||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 345899999999999999988754 89999999999999999874 336899999998762 21 3356799999643
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.-.. ....+++.+.+ ++|++.+++.
T Consensus 371 Pr~G---------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 371 PRKG---------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCCC---------CCHHHHHHHHh-cCCCEEEEEc
Confidence 3111 12455555554 7888876553
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=82.84 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=76.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCC---CCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE---DESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~~~fD~Vi 78 (210)
...+|||.|.|+|.++..+++. +..+|+..|+.++..+.|+++++.. .++++...|+...- |. ++.+|.|+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~Davf 118 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFDAVF 118 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCcccEEE
Confidence 3468999999999999999975 5568999999999999999998543 57999999997533 32 36799998
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhc-cCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~L-kpgG~~~~~~ 117 (210)
.. + +++..++..+.++| |+||++.+.+
T Consensus 119 LD-----l-------p~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 119 LD-----L-------PDPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp EE-----S-------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred Ee-----C-------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence 52 3 67888999999999 8999997765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=82.80 Aligned_cols=80 Identities=11% Similarity=0.018 Sum_probs=58.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEE-cccCCCC-C--CCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQ-MDVRDMS-F--FEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~-~d~~~~~-~--~~~~~fD~ 76 (210)
....++||||||+|.+...++.. ...+++|+|+++.+++.|+++.+.. .++.+.. .|..++. . .+++.||+
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 34578999999999777666654 4458999999999999999988644 2566643 3433322 0 24678999
Q ss_pred EEECCccch
Q 028385 77 VIDKGTLDS 85 (210)
Q Consensus 77 Vi~~~~l~~ 85 (210)
|+|+..++.
T Consensus 193 ivcNPPf~~ 201 (321)
T PRK11727 193 TLCNPPFHA 201 (321)
T ss_pred EEeCCCCcC
Confidence 999988764
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-09 Score=83.51 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++.+. +++++|+++.+++.++++... .++++++++|+...+ + ..||.|+++..+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~--~~~d~VvaNlPY 111 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F--PYFDVCVANVPY 111 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c--cccCEEEecCCc
Confidence 445799999999999999998754 899999999999999988743 368999999998765 4 368999988766
Q ss_pred c
Q 028385 84 D 84 (210)
Q Consensus 84 ~ 84 (210)
+
T Consensus 112 ~ 112 (294)
T PTZ00338 112 Q 112 (294)
T ss_pred c
Confidence 5
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=81.85 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=85.4
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEc-ccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQM-DVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..|||-=||||.+.....-.|. +++|+|++..|++-++.+.+.. ....+... |+.++| ++++++|.|++....--
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~~~~vdaIatDPPYGr 276 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LRDNSVDAIATDPPYGR 276 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CCCCccceEEecCCCCc
Confidence 3799999999999998888787 8999999999999999998654 45555666 999999 99999999998643321
Q ss_pred hccCCCc--hHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNA--PISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~--~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-..-... ..-..++++.+.++||+||++++...
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1000111 24578999999999999999988764
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-09 Score=82.64 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=79.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC-----CCCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-----EDESF 74 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~-----~~~~f 74 (210)
.+..+|||||+++|..+..++.. ...+++.+|.++...+.|++.++.. .+++++.+|+.+. +.+ ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 45668999999999999988874 3458999999999999999988533 6899999998773 211 13689
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
|+|+... ........+..+.++|+|||.+++
T Consensus 158 D~iFiDa----------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDA----------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecC----------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 9999642 246778888999999999999865
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=84.29 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
..+||++=|=||.++...+..|..+|++||.|..+++.|+++.+ +. ..+.|+++|+..+- .-...+||+|+..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 45799999999999999999888899999999999999999984 22 45789999987742 1234589999975
Q ss_pred CccchhccCC------CchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 81 GTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 81 ~~l~~~~~~~------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.. .|+. +-..+...++..+.++|+|||.+++++....
T Consensus 298 PP----sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 298 PP----SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred Cc----ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 33 2332 2346888999999999999999999887643
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-09 Score=74.98 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=63.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+++|+|||+|.++......+...+.|+|+++++++.++++.+.. -++++.++|+.++. +..+.||.++.+..+
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPF 124 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCC
Confidence 4579999999999997776666668999999999999999988654 56799999999987 778999999976543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-08 Score=78.92 Aligned_cols=75 Identities=9% Similarity=0.047 Sum_probs=60.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC-CCCC--cccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDE--SFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~--~fD~Vi~~~~ 82 (210)
...++|.+||.|..+..+++.. ...|+|+|.++.|++.++++.....++.++++|..++.. .+++ ++|.|+....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 3579999999999999999873 358999999999999999887544579999999988641 1122 7999888543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-08 Score=74.20 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCc---------EEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYED---------IVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~---------v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~ 73 (210)
....|||--||+|.+..+.+.. .... ++|+|+++.+++.|+++.+.. ..+.+.+.|+.+++ +.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cccCC
Confidence 3457999999999999887654 2223 889999999999999988532 45899999999998 88899
Q ss_pred ccEEEECCccchhcc-CCCchHHHHHHHHHHHHhccC
Q 028385 74 FDAVIDKGTLDSLMC-GTNAPISASQMLGEVSRLLKP 109 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~-~~~~~~~~~~~l~~i~r~Lkp 109 (210)
+|+|+++..+---.. ......-+.++++++.++|++
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 999999754321100 001123456778999999998
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-08 Score=79.74 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=74.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.-|||+|||+|.++...++.|.++|++++.| +|.+.|++..+.+ +++.++.+-+++++ + .++.|+||+-.+ ..
T Consensus 179 kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPM-G~ 254 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPM-GY 254 (517)
T ss_pred cEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccc-hh
Confidence 4589999999999999999999999999955 6888888877543 68999999999987 4 468999997432 22
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+++ +..-++.. -..+|.|||.|..+
T Consensus 255 mL~---NERMLEsY-l~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 255 MLV---NERMLESY-LHARKWLKPNGKMF 279 (517)
T ss_pred hhh---hHHHHHHH-HHHHhhcCCCCccc
Confidence 222 22333333 44569999999874
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.9e-08 Score=68.04 Aligned_cols=95 Identities=13% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCCEEEeCCCCch-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIV-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|. ++..+.+.|. +|+++|+++.+++.++++. ++++.+|+.+.. +. -+.+|+|.+.-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-----~~~v~dDlf~p~-~~~y~~a~liysir--- 85 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-----LNAFVDDLFNPN-LEIYKNAKLIYSIR--- 85 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-----CeEEECcCCCCC-HHHHhcCCEEEEeC---
Confidence 34689999999995 8888888877 9999999999999887753 688999998754 22 35689998732
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+..+.+..+-++.+- -|.-+++..++.
T Consensus 86 -------pp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 86 -------PPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred -------CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 336677777777765 456677776554
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-08 Score=77.11 Aligned_cols=97 Identities=9% Similarity=0.174 Sum_probs=73.8
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCccc
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD 75 (210)
|+.+. +.+||=||.|.|..++++++++. +|+.+|+++.+++.+++.... -|+++++.. +. . ...++||
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~-~~~~~fD 141 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--D-LDIKKYD 141 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--h-ccCCcCC
Confidence 34333 46899999999999999999975 999999999999999996532 267777752 11 1 2347899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+||..... .....+.++|.|+|||.++..
T Consensus 142 VIIvDs~~------------~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 142 LIICLQEP------------DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEEEcCCC------------ChHHHHHHHHhcCCCcEEEEC
Confidence 99975321 145678899999999999653
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-08 Score=78.10 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=79.8
Q ss_pred CCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC-----C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE-----I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+||-||-|.|..++.++++. ..+++.+|+++.+++.+++.... . ++++++..|..+.-.-..++||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 489999999999999999984 56899999999999999998742 2 7889999998874212233899999743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+=. . |....---..+++.+++.|+++|+++..
T Consensus 158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 211 1 0000012368899999999999999776
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-08 Score=77.28 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-CCC--CCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD-MSF--FEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~-~~~--~~~~~fD~Vi~~ 80 (210)
...++||+-||+|.++.+.+.+|..+|+.+|.++.++...+++.+.. .++.++..|+.. +.. .....||+|+..
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 34689999999999999999999989999999999999999988543 357888888654 221 146899999987
Q ss_pred CccchhccCCCchHHHHHHHHHHH--HhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~~ 117 (210)
..+..- ....+++..+. .+|+++|.+++-.
T Consensus 122 PPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKG-------LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 766542 22477777776 7999999885544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-08 Score=77.40 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc----------------------------------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------------------------------- 51 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------------------------------- 51 (210)
....+||--|||.|+++..++..|+ .+.|.|.|--|+-...-...
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4456899999999999999999999 89999999998655432110
Q ss_pred --------CCCCcEEEEcccCCCCCCC---CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 52 --------EIPQLKYLQMDVRDMSFFE---DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 52 --------~~~~v~~~~~d~~~~~~~~---~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
...++....+|+.... .+ .++||+|+..+.++-. ++..++++.|.++|||||.++=
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y-~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVY-GPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEec-CCcccCCcccEEEEEEEeech-------HHHHHHHHHHHHHhccCCEEEe
Confidence 0124566667776654 23 3799999999888877 9999999999999999998754
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-08 Score=78.74 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=79.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCC-CC-CCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDM-SF-FEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~-~~-~~~~~fD~Vi~~~ 81 (210)
..+|||+=|=||.++...+..|..+|+.+|.|..+++.++++.. +. .+++|++.|+.+. .. -..++||+||+..
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 46899999999999999888888789999999999999999874 32 4789999998763 10 1246899999854
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.. -....-..++.+++..+.++|+|||.+++++++
T Consensus 204 PsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 204 PSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3211 001112357888999999999999999887765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.2e-09 Score=81.25 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=81.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
-.++|+|||+|..+. ..+.+.++|.|++...+..+++.. ......+|+.++| +.+.+||.+++..++||+..
T Consensus 47 sv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FREESFDAALSIAVIHHLST 118 (293)
T ss_pred ceeeecccCCcccCc---CCCcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCCCccccchhhhhhhhhhh
Confidence 468999999998752 335557999999999888887653 2267889999999 99999999999999999833
Q ss_pred CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 89 ~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+....++++++.|+|+|||..++..++
T Consensus 119 ----~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 119 ----RERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred ----HHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 367789999999999999997776554
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-08 Score=84.74 Aligned_cols=113 Identities=8% Similarity=-0.063 Sum_probs=82.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
...+||||||.|.++..++.. +...++|+|+....+..+.++.. +..|+.+.+.|+..+. .++++++|.|+.++.=
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPD 427 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPD 427 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCC
Confidence 456899999999999999886 66689999999988887777653 3478888888876432 3778999999865432
Q ss_pred chhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
=|.-- ...-+--....++.+.++|||||.+.+.+-..
T Consensus 428 PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~ 465 (506)
T PRK01544 428 PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIE 465 (506)
T ss_pred CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 11100 00111234678999999999999998887443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.1e-08 Score=76.74 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCC-CCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~ 81 (210)
...+|||...|-|..+...++.|..+|+.++.++..++.|.-+--. . ..++++.+|+.+. +.|+|.+||+|+-..
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 3468999999999999999999988999999999999998765321 1 4689999998884 348999999998532
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.= ++.-+.--..++.++++|+|||||.++-.. ++|.
T Consensus 214 PR----fS~AgeLYseefY~El~RiLkrgGrlFHYv-G~Pg 249 (287)
T COG2521 214 PR----FSLAGELYSEEFYRELYRILKRGGRLFHYV-GNPG 249 (287)
T ss_pred Cc----cchhhhHhHHHHHHHHHHHcCcCCcEEEEe-CCCC
Confidence 21 222223345788999999999999996543 3443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-08 Score=83.79 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=87.5
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.++|+|||-|.....+.....+.++|+|+++.-+.++....... ....++.+|+.+.| +++++||.+-+..+..|.
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v~~ld~~~~~ 191 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGVRFLEVVCHA 191 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcEEEEeecccC
Confidence 68999999999999998887779999999998888776655321 33456899999999 999999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++...+++|++|++||||.++..++
T Consensus 192 -------~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 192 -------PDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred -------CcHHHHHHHHhcccCCCceEEeHHH
Confidence 9999999999999999999987554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-08 Score=80.71 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=74.6
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|||++||+|..+..++.. +..+|+++|+++.+++.++++.+ +..++.+.++|+..+. ...+.||+|+....
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC---
Confidence 57999999999999999775 54589999999999999998874 3356779999987642 11467999986421
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.....++....+.+++||.+++.
T Consensus 135 --------Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --------GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22345777767778999999886
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.8e-08 Score=75.45 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC-cccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l~ 84 (210)
+..|||||+|.|.++..+++.+. .|+++|+++.++...+++.....+++++.+|+...+ ++.- .++.|+++-.+.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d-~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD-FPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc-chhhcCCCEEEEcCCCc
Confidence 56899999999999999999977 799999999999999999876689999999999987 6543 688999886654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=76.49 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=85.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
....+|+|.|.|..+..+... +.++-+++.+...+..+...+. +.|+.+-+|+.+- .|. -|+|+..+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~--~P~--~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD--TPK--GDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceeccccccc--CCC--cCeEEEEeecccC-
Confidence 456799999999999999984 5579999999888888777764 4588888887663 233 3599999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+.++..++|+++++.|+|||.+++.+...|.
T Consensus 250 ----tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 ----TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ----ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 8899999999999999999999999875543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-08 Score=86.48 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=67.6
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcE--EEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDI--VNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v--~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
.+||+|||+|+++..|.+++...+ .--|..+..++.|.++- .+- .+-...-..+| |++++||+|.|..++...
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG--vpa-~~~~~~s~rLP-fp~~~fDmvHcsrc~i~W- 194 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG--VPA-MIGVLGSQRLP-FPSNAFDMVHCSRCLIPW- 194 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC--cch-hhhhhcccccc-CCccchhhhhcccccccc-
Confidence 469999999999999998765211 11244556667666553 111 11122235688 999999999999887643
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .+-..++-++.|+|+|||+|+...
T Consensus 195 -~----~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 195 -H----PNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred -h----hcccceeehhhhhhccCceEEecC
Confidence 1 222458999999999999997754
|
; GO: 0008168 methyltransferase activity |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=70.67 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcC------------CCCcEEEEcccCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEE------------IPQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~------------~~~v~~~~~d~~~~~~~~~ 71 (210)
...+.||+|+|+|.++..++.. .....+|||.-++.++.++++... ..++.++.+|..... -+.
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~-~e~ 160 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY-AEQ 160 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-Ccc
Confidence 3467999999999999888854 233459999999999999988732 156889999999876 577
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..||.|.+-. ...+..+++..-|++||.+++--
T Consensus 161 a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 APYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 8999999753 23455677788899999997753
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-07 Score=64.84 Aligned_cols=100 Identities=25% Similarity=0.337 Sum_probs=73.3
Q ss_pred EEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCC--cEEEEcccCC--CCCCCC-CcccEEEECCcc
Q 028385 11 TCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRD--MSFFED-ESFDAVIDKGTL 83 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~--v~~~~~d~~~--~~~~~~-~~fD~Vi~~~~l 83 (210)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...|... .+ +.. ..||++......
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999986655422111 5788888876 56 666 589999444444
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++. . ....+.++.+.++|+|.+++.....
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 444 2 7899999999999999998877653
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-07 Score=71.86 Aligned_cols=107 Identities=18% Similarity=0.173 Sum_probs=83.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC--CCCc-EEEEcccCCCCCC--CCCcccEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE--IPQL-KYLQMDVRDMSFF--EDESFDAV 77 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~--~~~v~~vD~s~~~~~~a~~~~~~--~~~v-~~~~~d~~~~~~~--~~~~fD~V 77 (210)
..+.+||||.||.|......... + ..++...|+|+..++..++..++ ..++ +|.++|+.+...+ -+-..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35578999999999998887765 3 25899999999999999998854 3555 9999999884312 23357999
Q ss_pred EECCccchhccCCCchH-HHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~-~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.++.++.+ +.. -....++-+.+++.|||+++.+.
T Consensus 214 iVsGL~ElF-----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELF-----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhC-----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999998876 333 36678999999999999996653
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=77.94 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=83.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||++||.|.=+..++.. +...+++.|+++..++.++++.+.. .++.+...|...+.....+.||.|+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 44468999999999999998875 3347999999999999999888643 6788888888775323346799999643
Q ss_pred ccchhc-cCCCc-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLM-CGTNA-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~-~~~~~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... +..++ . .-..++|.+..+.|||||.++-.+++
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 321110 00111 0 13468899999999999999877776
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.1e-08 Score=72.15 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=75.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+++|||+|.|..+..++-. +..+++.+|.+..-+...+.-.. +.+|+++++..+++ + ....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEeehh----
Confidence 6999999999999888754 66689999999866665554443 33789999999998 4 46789999999765
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....++.-+...+++||.+++.-
T Consensus 125 -------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 556788899999999999998765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=70.31 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=64.1
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
+...+.-|||+|.|||.++..+++.+. +|+++++++.|+....++..+.+ ..++..+|....+ + -.||.+|++
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~--P~fd~cVsN 130 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-L--PRFDGCVSN 130 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-C--cccceeecc
Confidence 445556799999999999999999877 89999999999999999987663 6899999998866 3 369999986
Q ss_pred Ccc
Q 028385 81 GTL 83 (210)
Q Consensus 81 ~~l 83 (210)
...
T Consensus 131 lPy 133 (315)
T KOG0820|consen 131 LPY 133 (315)
T ss_pred CCc
Confidence 554
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-07 Score=68.14 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=86.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-CCCCcEEEEcccCCC-CCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l 83 (210)
++.++||++|=|-|.....+.+.+..+-+-++..++.++.++.... +..||....+-.++. +.++++.||-|+....-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5668999999999999988888766678899999999999998763 336788888877773 35789999999875544
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++. ++.....+.+.|+|||+|+|-...
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 555 888999999999999999986654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.59 E-value=6e-08 Score=76.64 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=77.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCCCCCC-cccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDE-SFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~-~fD~Vi 78 (210)
...+||-||-|.|..+..+.+++ ..+++.+|+++.+++.|++... ..++++++..|+...-.-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 45689999999999999999885 5689999999999999998753 127899999999773212233 899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....- .. +....---...++.+++.|+|||++++-.
T Consensus 156 ~D~~d-p~--~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PD--GPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TT--SCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CC--CCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 74321 11 00000113688999999999999997754
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=72.56 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------------------C------------CCc-E
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------------------I------------PQL-K 57 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------------------~------------~~v-~ 57 (210)
.++||||||+-.....-+..-..+++..|+++...+..++-.++ . ..| .
T Consensus 58 ~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~ 137 (256)
T PF01234_consen 58 ETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQ 137 (256)
T ss_dssp EEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEE
T ss_pred CEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhce
Confidence 47899999996554333333455899999999988766543211 0 112 4
Q ss_pred EEEcccCCCCCCCC-----CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 58 YLQMDVRDMSFFED-----ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 58 ~~~~d~~~~~~~~~-----~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++.+|+.+.+.+.. ..||+|++.++|+.+ ..+.+...++++++.++|||||.|++...-
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a---~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA---CKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHH---cCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 78889988542333 359999999999876 235678999999999999999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-07 Score=67.50 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=81.2
Q ss_pred CCCC-CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCCC-Cccc
Q 028385 2 ATPS-TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFED-ESFD 75 (210)
Q Consensus 2 ~~~~-~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~~-~~fD 75 (210)
+.+. ....++||+=+|+|.++.+.+.+|...++.+|.+..++...+++.+.. .++.++..|+... +.... +.||
T Consensus 37 l~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 37 LAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred ccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCccc
Confidence 3452 556789999999999999999999989999999999999999988543 5778888888753 11222 2599
Q ss_pred EEEECCccchhccCCCchHHHHHHHHH--HHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGE--VSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~--i~r~LkpgG~~~~~~ 117 (210)
+|+....++. ..-+....+.. -..+|+|+|.+++-.
T Consensus 117 lVflDPPy~~------~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAK------GLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCcc------chhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 9998777652 11222333333 567899999996544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-07 Score=72.74 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=75.5
Q ss_pred CCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEE--EEcccCCC----CC-CCCCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYE--EIPQLKY--LQMDVRDM----SF-FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~--~~~d~~~~----~~-~~~~~f 74 (210)
..|+|+|||+|.=+..+++. ....++++|+|..+++.+.++.. ..+++.+ +++|..+. +. ......
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999877666543 12379999999999999999886 3477766 78887663 20 112345
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHH-hccCCcEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYML 115 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r-~LkpgG~~~~ 115 (210)
.+++..+. ..|...+.....+|+++++ .|+|||.+++
T Consensus 158 r~~~flGS----siGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 158 TTILWLGS----SIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cEEEEeCc----cccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 67776542 2334477899999999999 9999999876
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=71.87 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------C-CC--CCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FE--DESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~-~~--~~~fD 75 (210)
...++||+||++|.++..+.++. ...|+|+|+.+. ...+++.++++|+.+.. . +. .+.||
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~d 93 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFD 93 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSES
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCcc
Confidence 45789999999999999999986 458999999875 11145556666654421 1 11 26899
Q ss_pred EEEECCccchhccC-C---CchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 76 AVIDKGTLDSLMCG-T---NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~-~---~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+|++.......... . ....-....+.-+.+.|+|||.+++-.+..+.
T Consensus 94 lv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~ 144 (181)
T PF01728_consen 94 LVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE 144 (181)
T ss_dssp EEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT
T ss_pred eeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc
Confidence 99998732211000 0 01133444555666779999999887776544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-07 Score=75.74 Aligned_cols=56 Identities=9% Similarity=0.156 Sum_probs=48.7
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~ 65 (210)
.+|||++||+|.++..+++.. .+|+++|+++.+++.++++.. +..+++|+.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 469999999999999888764 489999999999999998874 33589999999876
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=77.83 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+.||+|..+..++.. +..+|+++|+++.+++.++++.+.+ .++.+.+.|+...-....+.||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 57999999999999999987 5678999999999999999988533 4688999998875312246799998632 2
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....+++.+.+.+++||.++++.
T Consensus 124 ---------Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---------GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------CCcHHHHHHHHHhcccCCEEEEEe
Confidence 223468888999999999998863
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=75.10 Aligned_cols=57 Identities=9% Similarity=0.178 Sum_probs=49.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM 66 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~ 66 (210)
.+|||++||+|.++..+++.. .+|+++|+++.+++.|+++.. +..++.|+++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 369999999999999888765 489999999999999999874 335799999998773
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=70.76 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=76.6
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcE---EEEcccCCCCCCCCCcccEEE
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLK---YLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~---~~~~d~~~~~~~~~~~fD~Vi 78 (210)
|.-...+|||+|||+|.-+-.+.+. ...+++++|.|+.|++.++......++.. +......+. .+-...|+|+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~DLvi 107 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF--LPFPPDDLVI 107 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc--ccCCCCcEEE
Confidence 4456678999999999876555443 34589999999999999988775443221 111111111 1112339999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
+.++|..+ +......+++++.+.+.+ .+++++.+.|...
T Consensus 108 ~s~~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf 146 (274)
T PF09243_consen 108 ASYVLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTPAGF 146 (274)
T ss_pred EehhhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCChHHH
Confidence 99999887 336677888888777765 9999998877743
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.2e-07 Score=70.00 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...|+|+-||-|.++..+++. ..+.|+++|++|.+++.++++.+ +. .++...++|+.++. +.+.||.|+....-
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~~drvim~lp~ 179 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGKFDRVIMNLPE 179 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TS
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--CccccCEEEECChH
Confidence 457999999999999999984 34479999999999999998873 22 56889999999876 37899999986543
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
. ...++..+.+++|+||.+
T Consensus 180 ~-----------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 180 S-----------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp S-----------GGGGHHHHHHHEEEEEEE
T ss_pred H-----------HHHHHHHHHHHhcCCcEE
Confidence 2 235678889999999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=67.39 Aligned_cols=97 Identities=10% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCCEEEeCCCCchhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCc-ccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDES-FDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~-~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~-fD~Vi~~~~l 83 (210)
..+++|||+|.|..+..++ -.+..+++.+|....-+.-.+.-.. +.+|++++++.+++.. .+.. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc-
Confidence 4689999999999999987 3355579999988765555554443 3378999999999875 2223 999999754
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....+..-+..++|+||.++..-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 566778888999999999875543
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-06 Score=75.01 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=74.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-------------------------------------------CCCcEEEEeCCHHHH
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-------------------------------------------GYEDIVNIDISSVAI 43 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-------------------------------------------~~~~v~~vD~s~~~~ 43 (210)
+...++|.+||+|.+..+.+.. ...+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3467999999999999877641 012589999999999
Q ss_pred HHHHHhhcCC---CCcEEEEcccCCCCCCC--CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhc---cCCcEEEE
Q 028385 44 DMMKMKYEEI---PQLKYLQMDVRDMSFFE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL---KPGGIYML 115 (210)
Q Consensus 44 ~~a~~~~~~~---~~v~~~~~d~~~~~~~~--~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~L---kpgG~~~~ 115 (210)
+.|+++.... ..+++.++|+.+++ .+ .++||+|+++..+..-. ....+...+..++.+.+ .+|+.+++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~-~~~~~~~~d~IvtNPPYg~r~---~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLK-NPLPKGPTGLVISNPPYGERL---GEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcc-cccccCCCCEEEECCCCcCcc---CchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9999998533 45899999999876 33 35799999986643210 11233344444444444 48888877
Q ss_pred EEc
Q 028385 116 ITY 118 (210)
Q Consensus 116 ~~~ 118 (210)
++-
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 663
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-06 Score=63.94 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=78.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-C----CCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-S----FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~----~~~~~~fD~ 76 (210)
+..+.||||.=||..+..++.. ...+|+++|+++...+.+.+..+. . ..++++++++.+. + ....++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4468899999888888777765 344899999999999999776642 2 5789999988762 1 245789999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++. +| ...+......++.+++|+||++++-.
T Consensus 153 aFv----Da------dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DA------DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----cc------chHHHHHHHHHHHhhcccccEEEEec
Confidence 985 33 34567799999999999999997643
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.2e-06 Score=63.16 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
+..+|+|+|+..|.|+..+++... ..|+++|+.|- +-.++|.++++|+..-+ .+....+|+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV 115 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVV 115 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceE
Confidence 346899999999999999988722 35999999763 22267999999998854 2445668999
Q ss_pred EECCcc--------chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 78 IDKGTL--------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 78 i~~~~l--------~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++...= ||. ....-...++.-...+|+|||.|++-.+-.
T Consensus 116 ~sD~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 116 LSDMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred EecCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 985432 332 111334556777778999999998877653
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-06 Score=66.22 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCCCEEEeCCCC--chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC--cEEEEcccCCCC---------C-CC
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRDMS---------F-FE 70 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--v~~~~~d~~~~~---------~-~~ 70 (210)
|-...||||||- -.+..++++. +..+|+.+|++|..+..++......++ ..++++|+.+.. . +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 344689999994 3455566664 667999999999999999999877777 899999998843 0 11
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
-..-=.|+...+|||+.. ..+...++..++..|.||+++.++..+.
T Consensus 148 ~~rPVavll~~vLh~v~D----~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPD----DDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp TTS--EEEECT-GGGS-C----GCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CCCCeeeeeeeeeccCCC----ccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 122236778899999822 2578899999999999999998887664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-06 Score=66.17 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=62.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC---CcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~fD~Vi~~~~l 83 (210)
....|||+|+|+|.++..+++.+ .+++++|+++.+++..+++....++++++.+|+..+. ... +.-..|+++-..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSSEEEEEEEETG
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCCceEEEEEecc
Confidence 45679999999999999999988 5999999999999999998876689999999999876 333 355677776554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=66.04 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=78.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCC---------------------------------C-------cEEEEeCCHHHHHHHHH
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGY---------------------------------E-------DIVNIDISSVAIDMMKM 48 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~---------------------------------~-------~v~~vD~s~~~~~~a~~ 48 (210)
..++|--||+|.+.++.+..+. . .++|+|+++.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 4689999999999988876531 1 27799999999999999
Q ss_pred hhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchH-HHHHHHHHHHHhccCCcEEEEEEc
Q 028385 49 KYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 49 ~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~-~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.... +-|+|.++|+.+++ -+-+.+|+||++....-=.-...... -+..+.+.+++.++--+.+++++.
T Consensus 273 NA~~AGv~d~I~f~~~d~~~l~-~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 273 NARAAGVGDLIEFKQADATDLK-EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHhcCCCceEEEEEcchhhCC-CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 88543 56899999999987 33379999999865432111111111 345566677788887778877753
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-06 Score=67.92 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=82.8
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.-.|||+=||-|.++..+++.+...|+++|++|.+++.++++..- . ..+..+++|+.... ..-+.+|-|+....
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~aDrIim~~p-- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVADRIIMGLP-- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccCCEEEeCCC--
Confidence 347999999999999999999875699999999999999998843 2 34889999999986 44488999997654
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
....+++....+.+++||.+...++..
T Consensus 266 ---------~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 266 ---------KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred ---------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 344567888888899999987777654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.9e-06 Score=71.97 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC---------CCcEEEEeCCHHHHHHHHHhhcCCC--CcEEEEcccCCCC----CCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG---------YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS----FFED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~---------~~~v~~vD~s~~~~~~a~~~~~~~~--~v~~~~~d~~~~~----~~~~ 71 (210)
...+|||.+||+|.+...++... ..+++|+|+++.++..++.+..... .+.+.+.|..... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 44689999999999998887641 1368999999999999998764432 3445555533211 0112
Q ss_pred CcccEEEECCccc
Q 028385 72 ESFDAVIDKGTLD 84 (210)
Q Consensus 72 ~~fD~Vi~~~~l~ 84 (210)
+.||+|+.+..+-
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999987654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=61.64 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|+|+|..+...++.|...|+..|+.|...+..+-+.+.+ -++.+...|+.. .+..||+|+...++..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcceeEEEeeceecC
Confidence 34689999999999999999998889999999988888777666543 456777777654 3568999999887754
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
- ....+++.-..++...|-.+++-+..++.
T Consensus 155 ~-------~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 155 H-------TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred c-------hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 4 66777788444444444455555555544
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=4e-06 Score=64.00 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=67.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---CCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Vi~~~~l~ 84 (210)
..++|||||=+..+... ..+.-+|+.||.++. .-.+.+.|+.+.| . +++.||+|.++.+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rp-lp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERP-LPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCCC-------------CCCceeeccccCC-CCCCcccceeEEEEEEEEe
Confidence 47999999965443321 223446999998761 2345788888876 4 477999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcE-----EEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGI-----YMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~-----~~~~~ 117 (210)
.+.. ....-+++..+++.|+|+|. ++++.
T Consensus 116 fVP~----p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 116 FVPD----PKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred eCCC----HHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 8833 36788999999999999999 76654
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=71.00 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC--CCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF--FEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~ 81 (210)
.+..+|||+=||.|.++..+++... +|+|+|+++++++.|+++.+.+ .|++|+.++++.... .....+|.|+..
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD- 369 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD- 369 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC-
Confidence 4556899999999999999997654 8999999999999999998543 679999999999651 123578999953
Q ss_pred ccchhccCCCchHHHH-HHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISAS-QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~-~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++.... .+++.+.+ ++|-.++++..
T Consensus 370 ---------PPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 370 ---------PPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ---------CCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 2444455 55555554 47777776553
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.5e-06 Score=63.94 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=61.3
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCc-ccEEEECCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDES-FDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~-fD~Vi~~~~l~ 84 (210)
.|+|+.||.|..+..+++... +|+++|+++..++.|+.+.+-. .+++|+++|+.+.. .+.... ||+|+.+...-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 489999999999999999854 8999999999999999987533 68999999998853 122222 89999875443
Q ss_pred hhccC------C---CchHHHHHHHHHHHHhc
Q 028385 85 SLMCG------T---NAPISASQMLGEVSRLL 107 (210)
Q Consensus 85 ~~~~~------~---~~~~~~~~~l~~i~r~L 107 (210)
-..+. . ...-+..++++...++-
T Consensus 81 Gp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t 112 (163)
T PF09445_consen 81 GPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT 112 (163)
T ss_dssp SGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-
T ss_pred CccccccCccCHHHccCCCCHHHHHHHHHhhC
Confidence 22111 0 11225666666666553
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-06 Score=68.57 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhh--cCC--CCcEEEEcccCCCCCCC-CCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKY--EEI--PQLKYLQMDVRDMSFFE-DES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~--~~~--~~v~~~~~d~~~~~~~~-~~~ 73 (210)
...+|+|.+||+|.+...+.+. ...+++|+|+++.++..|+.+. ... .+..+..+|....+... ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3447999999999998887662 4458999999999999988664 221 33467888876654233 578
Q ss_pred ccEEEECCccchhccCC--------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGT--------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~--------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
||+|+++..+-...+.. .....-..++..+.+.||+||++.++.
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 99999986654330100 011122347899999999999976655
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.4e-07 Score=69.87 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=70.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+.++||+|+|.|..+..++..- .+|++.+.|..|..+.+++. .++. ...+.. .-+-+||+|.|.+.|+--
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~-----ynVl--~~~ew~-~t~~k~dli~clNlLDRc- 182 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN-----YNVL--TEIEWL-QTDVKLDLILCLNLLDRC- 182 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC-----Ccee--eehhhh-hcCceeehHHHHHHHHhh-
Confidence 3689999999999999887753 47999999999999887753 1111 111111 223469999999988865
Q ss_pred cCCCchHHHHHHHHHHHHhccC-CcEEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKP-GGIYML 115 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~Lkp-gG~~~~ 115 (210)
-++-++++.++.+|.| +|++++
T Consensus 183 ------~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 183 ------FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ------cChHHHHHHHHHHhccCCCcEEE
Confidence 6788999999999999 888765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-05 Score=61.95 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
.+.++|.-+|.|.-+..+++. +..+|+|+|.++.+++.++++.... .++.+++++..++. ....+++|.|+...
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEec
Confidence 357999999999999999886 3468999999999999999987544 57899999988753 12345788888754
Q ss_pred cc
Q 028385 82 TL 83 (210)
Q Consensus 82 ~l 83 (210)
.+
T Consensus 101 Gv 102 (305)
T TIGR00006 101 GV 102 (305)
T ss_pred cC
Confidence 33
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.9e-06 Score=61.19 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=74.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+.|+|+|+|.++...++. ..+|++++.+|.....|.++. ....|+.++.+|+.+.. | ..-|+|+|-. ++-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEm-lDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEM-LDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHH-hhHH
Confidence 46799999999999877766 558999999999999999985 44578999999999987 6 5579998732 2211
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+. .+....++..+...||.++.++
T Consensus 109 Li----~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LI----EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hh----cccccHHHHHHHHHhhcCCccc
Confidence 11 1345566777777888888774
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=61.71 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCcEEEEcccCCCCCCCC---
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVRDMSFFED--- 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~v~~~~~d~~~~~~~~~--- 71 (210)
.....+|||||.|......+.. +..+.+|||+.+...+.|+.... ...++++..+|+.+.+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~~~ 120 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKDIW 120 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHHHG
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhhhh
Confidence 3456799999999998777654 66569999999998887765321 1246778888876643 111
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
..-|+|++++.... ++....+.+...-||+|.+++.
T Consensus 121 s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 121 SDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 23589999876422 5677777888889999988754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.1e-05 Score=62.03 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC-CCC-CcccEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF-FED-ESFDAVI 78 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~---~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-~~~-~~fD~Vi 78 (210)
....+|||+.++.|.=+..+++.. ...|+++|.++.-++..+++.+.. .|+.....|....+. .+. ++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 344789999999998888888762 224799999999999999988644 567888888876541 222 3599999
Q ss_pred ECCccchhccC-C-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMCG-T-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~~-~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..........- . ... .-+.++|....++|||||.++-.+++
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 75432221100 0 011 23668899999999999999888776
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.5e-05 Score=57.07 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=77.9
Q ss_pred EEEeCCCCchhHHHHHHcCCC-cEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-CCCCCCCcccEEEECCccch
Q 028385 11 TCRRAAPSIVMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~ 85 (210)
|+||||-.|.+...+.+++.. .++++|+++.-++.|+++.... .++++..+|... ++ +.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGM--- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGM--- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC--CCCCCCEEEEecC---
Confidence 689999999999999998653 6999999999999999988533 579999999655 33 2333788876543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+-....+.+++....++....|++...........++. ..+|.+.
T Consensus 76 ------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~--~~gf~I~ 120 (205)
T PF04816_consen 76 ------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLY--ENGFEII 120 (205)
T ss_dssp -------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHH--HTTEEEE
T ss_pred ------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHH--HCCCEEE
Confidence 22567788888888887767787776655555555542 4456654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=57.86 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=72.9
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEE
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 79 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~ 79 (210)
+.....+||-+|+.+|.....+..- + ...|++++.|+...+..-.-.+..+|+--+..|+..... .--+..|+|++
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence 3445568999999999999988875 3 457999999996544444333334889889999987431 22348999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-. .+.+.+-++.+....||+||.+++.-
T Consensus 150 DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 150 DVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp E-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 422 22567788899999999999998753
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.3e-05 Score=63.17 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=65.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....++||+||++|.++..+.+.|. .|++||..+- .......++|.....|..... -+.+.+|.++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc---
Confidence 3456899999999999999999988 9999996652 222333478888888876654 23678999998644
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg 110 (210)
..+.++.+-+.++|..|
T Consensus 280 --------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --------EKPARVAELMAQWLVNG 296 (357)
T ss_pred --------cCHHHHHHHHHHHHhcC
Confidence 45567777778888666
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=5e-05 Score=54.89 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=55.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHH-----cCCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVK-----DGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~-----~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD 75 (210)
.....|+|+|||.|.++..++. ....+|+++|.++..++.+.++.+.. .++.+..++..+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 4556899999999999999998 55558999999999999988876422 45666666655443 355677
Q ss_pred EEEEC
Q 028385 76 AVIDK 80 (210)
Q Consensus 76 ~Vi~~ 80 (210)
+++.-
T Consensus 102 ~~vgL 106 (141)
T PF13679_consen 102 ILVGL 106 (141)
T ss_pred EEEEe
Confidence 77763
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.6e-05 Score=66.25 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=44.2
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM 66 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~ 66 (210)
+|||+-||.|.++..+++... +|+|+|+++.+++.|+++.+ +..|++|+.+++.+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 799999999999999988755 89999999999999999884 447899998877653
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.1e-05 Score=59.20 Aligned_cols=102 Identities=14% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCEEEeCCCCchhHHHHHH-c-C-CCcEEEEeCCHHHHHHHHHhhcC----CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK-D-G-YEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~-~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+|+=||||.=-++..+.. . + ...++++|+++.+++.+++-.+. ..++.|+++|..+.. ..-..||+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEhh
Confidence 4899999998766655544 2 2 34799999999999999887652 167999999998765 4446899998755
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.... ..++..+++.++.+.++||..+++-+
T Consensus 201 lVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 4321 23578999999999999999998775
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=59.72 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-----cC----CCCcEEEEcccCCCCCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-----EE----IPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~----~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
+-.+||-+|.|.|.-.+++.+.+ ..+++-+|.+|.|++.++++. ++ .++++++..|+-++-.-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 34579999999999999999986 679999999999999998432 11 178999999988742123568999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
||.... + -......+--..++..-+.|.|+++|.+++. -+.|.
T Consensus 369 vIVDl~-D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ-ags~y 411 (508)
T COG4262 369 VIVDLP-D-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQ-AGSPY 411 (508)
T ss_pred EEEeCC-C-CCCcchhhhhhHHHHHHHHHhcCcCceEEEe-cCCCc
Confidence 986321 0 0000011122345677788999999999654 34443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.7e-06 Score=57.09 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=44.4
Q ss_pred EEeCCCCchhHHHHHHc----CCCcEEEEeCCHH---HHHHHHHhhcCCCCcEEEEcccCCC-CCCCCCcccEEEECCcc
Q 028385 12 CRRAAPSIVMSEDMVKD----GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 12 LdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~---~~~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l 83 (210)
||+|+..|..+..+++. +..+++++|..+. .-+..++ ..-..+++++.++..+. +.++.++||+|+..+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 69999999888887764 2237999999994 3333332 11115799999998763 22445789999965431
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+.....+..+.+.|+|||.+++-+
T Consensus 80 --------~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --------SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --------CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 12677888999999999999987654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00017 Score=56.81 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=75.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCC--CCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE--DESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~--~~~fD~Vi~~ 80 (210)
..+|||-|+|+|.++..+++. +..+++.+|+.+.-.+.|++.++.. .++++..-|+...- |. +..+|.|+..
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F~~ks~~aDaVFLD 184 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-FLIKSLKADAVFLD 184 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-ccccccccceEEEc
Confidence 457999999999999999986 5568999999999888888877532 68999999998854 44 5679999853
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
+ +.+..++-.++++||.+|.-
T Consensus 185 -----l-------PaPw~AiPha~~~lk~~g~r 205 (314)
T KOG2915|consen 185 -----L-------PAPWEAIPHAAKILKDEGGR 205 (314)
T ss_pred -----C-------CChhhhhhhhHHHhhhcCce
Confidence 3 66777888888899988853
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.5e-05 Score=54.11 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=47.0
Q ss_pred CEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC
Q 028385 10 DTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM 66 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~ 66 (210)
.+||+|||.|.++..+++.+. .+++++|.++.+.+.++++.+. .+++.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 389999999999999988744 3799999999999999988753 35688888777653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.3e-05 Score=56.23 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=73.4
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCC-CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS-FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~-~~~~~~fD~Vi~~ 80 (210)
.+|||+|.|--.++..|... +...|...|-++..++..++..... ..+.....+...-. ....++||+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 47899999965555545433 4558999999999999887765321 22222222222211 1346699999998
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
.++..- +-...+.+.|+++|+|.|..++.+..+...
T Consensus 111 DClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~s 146 (201)
T KOG3201|consen 111 DCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQS 146 (201)
T ss_pred cchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccch
Confidence 887544 778889999999999999987766444433
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00039 Score=52.59 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEE
Q 028385 3 TPSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 79 (210)
Q Consensus 3 ~~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~ 79 (210)
.|..+..+||-+|+.+|.....+..- +...++++++|+.+....-...++.+|+--+..|+..... +--+..|+|+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence 35566779999999999999998886 4457999999998877666666666899899999876331 22345888875
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.-. .+.+.+-+..++...||+||.+++.
T Consensus 152 DVA---------Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 152 DVA---------QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ecC---------CchHHHHHHHHHHHhcccCCeEEEE
Confidence 311 2356677788999999999977663
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.2e-05 Score=59.73 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=67.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC---------------------------CCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE---------------------------IPQL 56 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~---------------------------~~~v 56 (210)
...+||--|||.|.++..++..|. .+-|=+.|--|+-...=.. +. .|.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 446799999999999999998877 5666677766643322111 00 0111
Q ss_pred ------------EEEEcccCCCC--CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 57 ------------KYLQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 57 ------------~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
..-.+|+...- .-..++||+|+..+.++-. .+....++.|.++|||||+++=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHHHHhccCCcEEEe
Confidence 11123333211 0123479999998888876 9999999999999999999965
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=55.57 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=70.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCc-EEEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v-~~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
++..+||+|+-||.++.-++++|.++|+++|.....+..--+.- +++ .+...|+..+. .+. +..|++++.-.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSF 154 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSF 154 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHcc-cCCCeEEEEeeh
Confidence 34578999999999999999999999999999876655433322 443 45556666653 122 267888876544
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-....++..+..+++++|.++..
T Consensus 155 ----------ISL~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 155 ----------ISLKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred ----------hhHHHHHHHHHHhcCCCceEEEE
Confidence 45688899999999999988664
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00097 Score=53.55 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=56.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
.+..+|.--|.|..+..+++.. ...++++|.++.+++.|+++.... +++.++..++.++. ....+.+|-|+.
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEEE
Confidence 3678999999999999999873 357999999999999999998654 68999999887753 133446666665
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=58.72 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-CCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~fD~Vi~~ 80 (210)
....+|||+.++.|.=+..+++. +...+++.|+++.-+...+++.+.. .++.....|..... ......||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 34457999999999998888876 3458999999999999998887543 67777778877752 1234469999975
Q ss_pred Cccchhcc-CCCc--------------hHHHHHHHHHHHHhc----cCCcEEEEEEcC
Q 028385 81 GTLDSLMC-GTNA--------------PISASQMLGEVSRLL----KPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~-~~~~--------------~~~~~~~l~~i~r~L----kpgG~~~~~~~~ 119 (210)
..-..... ...+ ..-..++|++..+.+ ||||+++-.+++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 33222110 0111 123567899999999 999999888875
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.7e-05 Score=57.71 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
...|+|.-||.|..+..++..+. .|+++|++|.-+..|+.+.+-. .+++|+++|+.++- .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 45689999999998888888765 7999999999999999988533 58999999998842 25555677887655
Q ss_pred cc
Q 028385 82 TL 83 (210)
Q Consensus 82 ~l 83 (210)
..
T Consensus 174 pw 175 (263)
T KOG2730|consen 174 PW 175 (263)
T ss_pred CC
Confidence 43
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00029 Score=50.47 Aligned_cols=86 Identities=24% Similarity=0.351 Sum_probs=58.7
Q ss_pred cEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCC-CcccEEEECCccchhccCCC----chHHHHHHHHHH
Q 028385 32 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDSLMCGTN----APISASQMLGEV 103 (210)
Q Consensus 32 ~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~~fD~Vi~~~~l~~~~~~~~----~~~~~~~~l~~i 103 (210)
+|+++|+-+.+++..+++.++. .+++++..+=+++..+-+ +++|+++.+.. +++-++. ..+.-..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999998543 579999887777653333 48999987643 3433331 224566789999
Q ss_pred HHhccCCcEEEEEEcC
Q 028385 104 SRLLKPGGIYMLITYG 119 (210)
Q Consensus 104 ~r~LkpgG~~~~~~~~ 119 (210)
.++|+|||.+.++.|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999999886
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00035 Score=56.71 Aligned_cols=74 Identities=8% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CC-CCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FF-EDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~-~~~~fD~Vi~ 79 (210)
..+..+|.--|.|.-+..+++. +...++|+|.++.+++.++++.... +++.++.+++.++. .. ....+|.|+.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEEE
Confidence 3457899999999999999986 4479999999999999999988654 78999999998864 13 3457888877
Q ss_pred C
Q 028385 80 K 80 (210)
Q Consensus 80 ~ 80 (210)
.
T Consensus 100 D 100 (310)
T PF01795_consen 100 D 100 (310)
T ss_dssp E
T ss_pred c
Confidence 4
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00052 Score=58.63 Aligned_cols=119 Identities=15% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCC--HHHHHHHHHhhcCCCCcEEEEccc-CCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDIS--SVAIDMMKMKYEEIPQLKYLQMDV-RDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..|+|+.+|.|.++..|.+.+. .|..+=.+ ++.+...-.+ +. +- ...|. +.++ .-..+||+|.+.+.+..
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydR--GL--IG-~yhDWCE~fs-TYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDR--GL--IG-VYHDWCEAFS-TYPRTYDLLHADGLFSL 439 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhc--cc--ch-hccchhhccC-CCCcchhheehhhhhhh
Confidence 4689999999999999987654 23222211 1111111111 00 11 11122 2244 34679999999888765
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 139 (210)
. ..+-+...++-|+-|+|+|||.+++-+...-....+.+ .....|....
T Consensus 440 ~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i-~~~lrW~~~~ 488 (506)
T PF03141_consen 440 Y----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKI-AKSLRWEVRI 488 (506)
T ss_pred h----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHH-HHhCcceEEE
Confidence 4 23356889999999999999999987754433333333 4567788753
|
; GO: 0008168 methyltransferase activity |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=3.7e-05 Score=55.50 Aligned_cols=46 Identities=33% Similarity=0.503 Sum_probs=41.1
Q ss_pred CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 66 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 66 ~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+ |.+++.|+|++.++++|+ ....-..++++++|.|||||++-+.-
T Consensus 41 ~~-F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 41 SM-FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cc-CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 45 999999999999999999 55788899999999999999997753
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00096 Score=50.22 Aligned_cols=108 Identities=10% Similarity=0.111 Sum_probs=63.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHH----------HHHHHHhhcCCCCcEEEEcccCCCCCCCCCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVA----------IDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~----------~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 75 (210)
...|+|+=.|.|.+++-+... +...|++.-..+.. -..+++. ...|++.+-.+...+. +.+..|
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccccC--CCCccc
Confidence 457999999999999988765 22356665443331 1111111 1134444444444332 334455
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++......|-+-+-........++..++++.|||||.+++.++.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 55543333322122223367889999999999999999999875
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00047 Score=56.38 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC------CCcEEEEcccCCCCCCCCCcc
Q 028385 3 TPSTGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDMSFFEDESF 74 (210)
Q Consensus 3 ~~~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~~f 74 (210)
.|....-+|||+|.|.|.-.-.+... + ..+++.++.|+..-+.......+. .+..-++.|-..++ ..+.|
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~y 186 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLY 186 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--cccee
Confidence 35556678999999998876555443 1 236778888876544443332211 11122233333343 34567
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhh
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~ 127 (210)
++|+...-|-+. .....+...++.+..++.|||.+++++-+.|..+...
T Consensus 187 tl~i~~~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I 235 (484)
T COG5459 187 TLAIVLDELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERI 235 (484)
T ss_pred ehhhhhhhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHH
Confidence 777764433332 2334566699999999999999999999888754433
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.002 Score=53.89 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=81.6
Q ss_pred CCCCCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC--CCCCCccc
Q 028385 2 ATPSTGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS--FFEDESFD 75 (210)
Q Consensus 2 ~~~~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~--~~~~~~fD 75 (210)
+..+....||||+.+..|.=+..++.. ....|++-|.+..-+...+++.... .+..+...|...+| .++. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 445566679999999988776666653 4457999999999998888877433 56667777777654 2444 899
Q ss_pred EEEECCccchhccCC--------C-------chHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 76 AVIDKGTLDSLMCGT--------N-------APISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~--------~-------~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-|+..........+. . -..-..++|.....++++||+++-.+++
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999654432211111 1 1123567889999999999999887765
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0018 Score=48.53 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=65.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~-------~~~~~~fD~V 77 (210)
..+|||+||..|.|+.-..+. +..-|.|+|+-. ....+.++++++ |+.+.. .+++...|+|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 568999999999999877765 556799999743 222245566666 666632 3678889999
Q ss_pred EECCccchhccCCCch------HHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 78 IDKGTLDSLMCGTNAP------ISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~------~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++...-. .+|.+-. +--..++.-....++|+|.|++-.+..
T Consensus 141 lSDMapn--aTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 141 LSDMAPN--ATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred EeccCCC--CcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 9853321 1222111 112233444455678999999877763
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00073 Score=54.62 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=43.6
Q ss_pred CCCEEEeCCCCchhHHHH-HHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEEcccCC--CC--CCCCCcccEEE
Q 028385 8 TRDTCRRAAPSIVMSEDM-VKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRD--MS--FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l-~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~--~~--~~~~~~fD~Vi 78 (210)
..++||||+|..-.--.+ ++....+++|+|+++..++.|+++.+.. .+|+++...-.. +. ...++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 457899999987554333 3332348999999999999999988433 457766543221 11 13356899999
Q ss_pred ECCccchh
Q 028385 79 DKGTLDSL 86 (210)
Q Consensus 79 ~~~~l~~~ 86 (210)
|+..++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99888753
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00061 Score=51.58 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---------CCCcEEEEcccCCC-CC-CCCC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---------IPQLKYLQMDVRDM-SF-FEDE 72 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---------~~~v~~~~~d~~~~-~~-~~~~ 72 (210)
.++...+.|||||.|.+...++.. +..-+.|.+|--...+..++++.. .+|+.+...++... |. |..+
T Consensus 58 ~~~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kg 137 (249)
T KOG3115|consen 58 LNKKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKG 137 (249)
T ss_pred ccccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhc
Confidence 345567899999999999988876 555688888877777777666521 25666676665542 21 1111
Q ss_pred cccE-EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDA-VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~-Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+- .+++..=|.-.--...+---..++.+..=+|++||.++.++
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 1111 11110000000000111123467888899999999998876
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00096 Score=52.43 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=58.7
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----------C-CCcEEEEcccCCCCCCCCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------I-PQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------~-~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
+|||+-+|+|..+..++..|. +|+++|.++.+....+..... . .+++++.+|..+.-.-...+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 799999999999999999987 599999999988877766532 1 3578888888774211234799999
Q ss_pred ECCccch
Q 028385 79 DKGTLDS 85 (210)
Q Consensus 79 ~~~~l~~ 85 (210)
...++.|
T Consensus 170 lDPMfp~ 176 (250)
T PRK10742 170 LDPMFPH 176 (250)
T ss_pred ECCCCCC
Confidence 8777655
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0024 Score=52.66 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=38.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcCC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEEI 53 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~ 53 (210)
...++|+|+|+|.++..+++. ...++..++.|++..+.-++..+..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 457999999999999999764 2457999999999998888877543
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.007 Score=46.54 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=80.2
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
++.||||-.+.+...+.+. ....+++.|+++..++.|.++.++. +++++..+|....- -.++.+|+|+..++
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~~d~ivIAGM--- 94 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDEIDVIVIAGM--- 94 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCCcCEEEEeCC---
Confidence 4999999999999999987 4457999999999999999988654 56777777774322 34558998886543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
+-.-....+++-.+-|+.=-++++.--..+....+++ ...+|.+.
T Consensus 95 ------GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~I~ 139 (226)
T COG2384 95 ------GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYEIK 139 (226)
T ss_pred ------cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCceee
Confidence 2245677777777777644455544333444444444 24455554
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=53.35 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.8
Q ss_pred CCCCcccEEEECCccchhccCC-------------------------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGT-------------------------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~-------------------------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
||.++.++++++.++||+.-.. ....|...+|+.-.+-|+|||+++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 8899999999999999984110 011256667777888899999999888
Q ss_pred cCCc
Q 028385 118 YGDP 121 (210)
Q Consensus 118 ~~~p 121 (210)
.+++
T Consensus 238 ~Gr~ 241 (386)
T PLN02668 238 LGRT 241 (386)
T ss_pred ecCC
Confidence 7764
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=53.75 Aligned_cols=118 Identities=14% Similarity=0.019 Sum_probs=67.1
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc------------C-----CCcEEEEeCCHHHHHHHHHh-------hcCCCCc--E
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD------------G-----YEDIVNIDISSVAIDMMKMK-------YEEIPQL--K 57 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~------------~-----~~~v~~vD~s~~~~~~a~~~-------~~~~~~v--~ 57 (210)
...+..+|+|+||.+|..+..+... + .-+|+.-|.-.+--...=+. ....+++ .
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 4556678999999999999877542 1 01577777543222111111 1111232 2
Q ss_pred EEEcccCCCCCCCCCcccEEEECCccchhcc---CCC-----------------------------chHHHHHHHHHHHH
Q 028385 58 YLQMDVRDMSFFEDESFDAVIDKGTLDSLMC---GTN-----------------------------APISASQMLGEVSR 105 (210)
Q Consensus 58 ~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~---~~~-----------------------------~~~~~~~~l~~i~r 105 (210)
-+.+.+-+-- ||+++.|+++++.++||+.- +.. ...+....|+.=.+
T Consensus 93 gvpgSFy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 93 GVPGSFYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEES-TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2334444433 89999999999999999842 110 11366677888888
Q ss_pred hccCCcEEEEEEcCCch
Q 028385 106 LLKPGGIYMLITYGDPK 122 (210)
Q Consensus 106 ~LkpgG~~~~~~~~~p~ 122 (210)
-|+|||+++++..+++.
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 99999999998877655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0039 Score=49.10 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=67.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh------cCC-CCcEEEEcccCCCC--CCCCCc-ccEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY------EEI-PQLKYLQMDVRDMS--FFEDES-FDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~------~~~-~~v~~~~~d~~~~~--~~~~~~-fD~Vi 78 (210)
.+|||+|+|+|..+..++.....+|+..|....+......+. .+. ..+.+...+..+.+ .+.... ||+|+
T Consensus 88 ~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dlil 167 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLIL 167 (248)
T ss_pred eeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEE
Confidence 469999999998888888865558988887654433332211 111 14555555544422 122223 99999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..++.+. +....++.-+...|-.+|.+++..
T Consensus 168 asDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 168 ASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEE
Confidence 99998876 677778888888888888554443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=51.01 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+|||||.=-++..+... +...++|+|++..+++...+..... .+.++...|...-+ +....|+.+..=+++.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEPADLALLLKTLPC 183 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSEESEEEEET-HHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCCcchhhHHHHHHH
Confidence 568999999998888776654 3348999999999999988776433 56778888887754 6778999999888877
Q ss_pred h
Q 028385 86 L 86 (210)
Q Consensus 86 ~ 86 (210)
+
T Consensus 184 l 184 (251)
T PF07091_consen 184 L 184 (251)
T ss_dssp H
T ss_pred H
Confidence 6
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00054 Score=58.56 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=48.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~ 65 (210)
.-+||+-||||.++..+++. ...|+|++++++++.-|+.+.. +..|.+|+++-+++
T Consensus 385 k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred cEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 45899999999999988875 4589999999999999998874 34789999996666
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=47.22 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=58.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~~~ 86 (210)
++++|+-||.|.++..+.+.|...+.++|+++.+++..+.+... . +.++|+.++.... ...+|+++.......+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 47999999999999989888887799999999999998888743 2 5678888865111 3579999987665433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0047 Score=47.23 Aligned_cols=102 Identities=14% Similarity=0.038 Sum_probs=53.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHH-HHhhcCCCCcEEEEcccCCCC------CC-CCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMM-KMKYEEIPQLKYLQMDVRDMS------FF-EDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a-~~~~~~~~~v~~~~~d~~~~~------~~-~~~~f 74 (210)
+..|+|+|.-.|..+..++.. +.++|+|+|++....... .+...-.++++++++|..+.. .. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 456999999888777666542 445899999965443322 121122378999999988753 01 12334
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+|+....-.| ....+.|+....++++|+++++-+
T Consensus 113 vlVilDs~H~~--------~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDSSHTH--------EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECCCccH--------HHHHHHHHHhCccCCCCCEEEEEe
Confidence 46665332111 456777888999999999997654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=53.15 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CC-C-CcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EI-P-QLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~-~-~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
+..+|||.=+|+|.-+..++.. +..+|+.-|+|+++++..+++.+ +. . .+.+.+.|+..+-....+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 3468999999999999988876 45689999999999999999863 33 2 4788888887742025788999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.+ ..+..+++...+.+|.||.+.++.
T Consensus 128 ---DPf-------GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 ---DPF-------GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----S-------S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC-------CCccHhHHHHHHHhhcCCEEEEec
Confidence 322 566778999999999999998765
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0011 Score=52.86 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------c--CCCC---cEEEEcccCCCCCCCCC--c
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------E--EIPQ---LKYLQMDVRDMSFFEDE--S 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~-------~--~~~~---v~~~~~d~~~~~~~~~~--~ 73 (210)
..+|||+|||.|.........+...+...|++.+.++...--. . ...+ ......+..+......+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ 196 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTH 196 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccc
Confidence 3589999999999999988888678999999988874222110 0 0011 11112211111101122 7
Q ss_pred ccEEEECCccchhccCCCchHHHHHH-HHHHHHhccCCcEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~-l~~i~r~LkpgG~~~~~ 116 (210)
||+|.++.++... ...+.+ ......+++++|+++..
T Consensus 197 ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 197 YDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhh
Confidence 8999888887765 555555 67777888999988765
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=42.37 Aligned_cols=107 Identities=7% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCC-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....++.+|+|+|.|......++++....+|++.++-.+..++-+. ... ....|..-|+.... +.+ |..|+.++
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~d--y~~vviFg 146 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LRD--YRNVVIFG 146 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccc--cceEEEee
Confidence 3445789999999999999999988668999999998887776544 111 56788888887765 444 44454433
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
.- .-...+-..+..-|..+..++.+-|.-|.+.
T Consensus 147 ae----------s~m~dLe~KL~~E~p~nt~vvacRFPLP~w~ 179 (199)
T KOG4058|consen 147 AE----------SVMPDLEDKLRTELPANTRVVACRFPLPTWQ 179 (199)
T ss_pred hH----------HHHhhhHHHHHhhCcCCCeEEEEecCCCccc
Confidence 21 2334455566667788888888877766643
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0025 Score=53.64 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=47.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD 65 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~ 65 (210)
+..-|||||+|||.++...++.+...|++++.-..|.+.|++...+. ++++++.---.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 34458999999999999888888888999999999999999877443 566666544333
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0084 Score=48.10 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC------CCcEEEEcccCCC-CCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDM-SFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~-~~~~~~~fD~Vi~~ 80 (210)
.+||=||-|.|...+..+++ ...++..+|++...++..++..+.. +++....+|...+ .....++||+|+.-
T Consensus 123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~d 202 (337)
T KOG1562|consen 123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITD 202 (337)
T ss_pred CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEe
Confidence 57999999999999988887 3457999999999999998876422 6889999987663 22457899999852
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. +-+ +.--..=.+..+.-+.+.||+||++++..
T Consensus 203 ss-dpv--gpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 203 SS-DPV--GPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred cC-Ccc--chHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 11 000 00000124566888999999999997754
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.044 Score=44.68 Aligned_cols=107 Identities=12% Similarity=0.147 Sum_probs=70.1
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEE--EcccCC-CC-CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYL--QMDVRD-MS-FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~--~~d~~~-~~-~~~~~~fD~Vi~~ 80 (210)
..+||=+|+|. |.++...++. |..+|+.+|.++..++.|++--... .+..-. ..++.+ .. .+....+|+.+..
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 35799999997 7777777775 7789999999999999999832211 111000 011111 00 1344569999875
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhh
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~ 127 (210)
..+ +..++.....++.||.+++..++.+....+.
T Consensus 250 sG~-------------~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi 283 (354)
T KOG0024|consen 250 SGA-------------EVTIRAAIKATRSGGTVVLVGMGAEEIQFPI 283 (354)
T ss_pred cCc-------------hHHHHHHHHHhccCCEEEEeccCCCccccCh
Confidence 443 4456667888999999988888776544333
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.014 Score=48.16 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=63.3
Q ss_pred CCEEEeCCC-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-cCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAP-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-VRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|+=+|+| .|..+..+++. + .+|+++|.+++-.+.|++.-.+ .++... ....+ --.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~-~~~~~~d~ii~tv~--- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALE-AVKEIADAIIDTVG--- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhH-HhHhhCcEEEECCC---
Confidence 356666765 56777888884 6 5999999999999999876432 334432 22222 11234999997543
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...+....+.|++||.++++-..
T Consensus 239 -----------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -----------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -----------hhhHHHHHHHHhcCCEEEEECCC
Confidence 44578888999999999888655
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=45.82 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=69.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------CC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------GY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FF 69 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~ 69 (210)
+-.|++|+.+..|.|+.-+.+. +. ..++++|+.+- .-.+.|.-+++|+.+.. .|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------CccCceEEeecccCCHhHHHHHHHHh
Confidence 3457899999999999888764 11 13999997542 22367888999998853 47
Q ss_pred CCCcccEEEECCccchhccCCCc------hHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNA------PISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~------~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..++-|+|+|.+.=+-. |... -+-+..+|.-...+|||||.|+.--|.
T Consensus 112 ggekAdlVvcDGAPDvT--GlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifR 165 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVT--GLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFR 165 (294)
T ss_pred CCCCccEEEeCCCCCcc--ccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhc
Confidence 77899999997653321 1111 123445677778899999999764443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.002 Score=47.04 Aligned_cols=103 Identities=17% Similarity=0.272 Sum_probs=61.4
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHH-HHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+.+-+|+..=..=...+++|..++..+|+++--++. .+.+.. .+...|... .. --.++||.+.+..+++|.
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-----si~p~df~~~~~-~y~~~fD~~as~~siEh~ 76 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-----SILPVDFAKNWQ-KYAGSFDFAASFSSIEHF 76 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-----cccHHHHHHHHH-Hhhccchhhheechhccc
Confidence 4566677664333333345677789999987632221 111110 111222221 11 224689999999999998
Q ss_pred ccCC----CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGT----NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~----~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-|. .....-.+.+.++.++|||||.+++.-
T Consensus 77 GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 77 GLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred cccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 6443 222345567889999999999998754
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0059 Score=52.58 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=77.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhc-CC-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYE-EI-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~-~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...|+=+|+|.|-+.....+. ...++++++-+|+++...+.+.- .. .+|+++..|++.+. -+....|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~-ap~eq~DI~VSE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWN-APREQADIIVSE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccC-CchhhccchHHH
Confidence 346788999999988776653 22379999999999887776442 22 67999999999987 556889998862
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++.+....+-..+.|.-+.+.|||+|+.+=.+|
T Consensus 447 -----LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 447 -----LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred -----hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 222222334567899999999999998865444
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=46.90 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=36.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---------~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
...+|+|+|+|+|.++..+++. ...+++.+|.|+.+.+..+++...
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 3478999999999999999873 124799999999999988888754
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.094 Score=41.09 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCC-CCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=+|=..-......+....++|+.+|+++..++..++..++. -+++.+..|+.+ +|.--.++||+++.....-
T Consensus 46 k~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT-- 123 (243)
T PF01861_consen 46 KRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT-- 123 (243)
T ss_dssp -EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS--
T ss_pred CEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC--
Confidence 468888854432222222234458999999999999888776432 349999999998 3423357999999865532
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+...-++.+....||..|......++
T Consensus 124 ------~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 124 ------PEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp ------HHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred ------HHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 277888999999999877744444444
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.066 Score=44.39 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC-----CcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCC--------C
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY-----EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF--------E 70 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~-----~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~--------~ 70 (210)
..+.+|||+.+..|.=+..+++... ..|++=|+++.-+...+...+.. +++.+...|+...|.. .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 3456899999999998888877521 26999999998887777666433 5566666666665521 2
Q ss_pred CCcccEEEECCccchhccCC----------------CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 71 DESFDAVIDKGTLDSLMCGT----------------NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~----------------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...||-|++.-...+-..-. .=..-..+++.+-.++||+||.++-.+++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 34699988742211100000 00113457789999999999999888776
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.01 Score=46.30 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=47.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---c---CC-----CCcEEEEcccCC-CCCCCCCcccE
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---E---EI-----PQLKYLQMDVRD-MSFFEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~---~~-----~~v~~~~~d~~~-~~~~~~~~fD~ 76 (210)
.+|||.-+|-|.-+.-++..|. +|+++|.||.+....+... . .. .+++++.+|..+ +. .++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcCCCCCE
Confidence 4899999999999998887776 8999999998766555332 1 11 368999999988 44 56889999
Q ss_pred EEECCccch
Q 028385 77 VIDKGTLDS 85 (210)
Q Consensus 77 Vi~~~~l~~ 85 (210)
|+...++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998777655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.11 Score=43.41 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=65.4
Q ss_pred CEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccC-C-----CCCCC-CCcccEEEEC
Q 028385 10 DTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-D-----MSFFE-DESFDAVIDK 80 (210)
Q Consensus 10 ~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~-~-----~~~~~-~~~fD~Vi~~ 80 (210)
+|+=+|||+ |.++..+++. +..+|+.+|.++.-++.|++.... ........ + .. .. ...+|+++..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~-~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILE-LTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHH-HhCCCCCCEEEEC
Confidence 799999998 7777777765 677999999999999999985422 11111111 0 11 12 2369999864
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.. ....+..+.++++|||.+.++....
T Consensus 246 ~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG-------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC-------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 32 3447888999999999998887653
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.075 Score=46.38 Aligned_cols=111 Identities=20% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh--cCCC-CcEEEEcccCCCCCC----CCCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY--EEIP-QLKYLQMDVRDMSFF----EDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~--~~~~-~v~~~~~d~~~~~~~----~~~~f 74 (210)
...+|.|..||+|.+.....+. . ...++|.|+++.....|+.+. .+.. ++....+|-..-|.. ..+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 3348999999999887666543 1 246999999999999999876 2222 345555554444412 34679
Q ss_pred cEEEECCccchhcc----------------C-CCchHH-HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMC----------------G-TNAPIS-ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~----------------~-~~~~~~-~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|.|+++..+....+ + ..+... ....++++...|+|||+..++.
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 99999876641111 1 012222 3788999999999998665544
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0068 Score=41.43 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=30.7
Q ss_pred cccEEEECCccchh--ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 73 SFDAVIDKGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~--~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.||+|+|..+.-++ .. +.+.+..+++.+++.|+|||.|++-
T Consensus 1 ~yDvilclSVtkWIHLn~---GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNW---GDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHH---HHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecC---cCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999998776543 12 3357889999999999999999653
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=48.54 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCcEEEEcccCCCC-CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 54 PQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 54 ~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++++++++++.+.- ..+++++|.++.....+++ +.....+.++++.+.++|||+++.-+...+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 78999999998842 2568999999999999998 7789999999999999999999998877543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.047 Score=46.01 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-cCC-C-CCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-VRD-M-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-~~~-~-~~~~~~~fD~Vi~~~~l 83 (210)
.+||..|||. |..+..+++. +..+++++|.+++..+.+++.... ..+.....+ ... + ....+..+|+|+..-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~ 264 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-ETINFEEVDDVVEALRELTGGRGPDVCIDAVGM 264 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-EEEcCCcchHHHHHHHHHcCCCCCCEEEECCCC
Confidence 4799999987 8888888776 444699999999999988875311 111111111 100 1 10123469999885311
Q ss_pred c-------hhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 D-------SLMC-GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~-------~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ ++.- ...+..+....+.++.++|+++|.++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 265 EAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 1 0000 00011223557888999999999998765
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.049 Score=45.04 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=.|||. |..+..+++. +..+|+++|.+++-++.+++.-... -+.....+..... ...+.+|+|+....
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~-~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-LVNPQNDDLDHYK-AEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-EecCCcccHHHHh-ccCCCCCEEEECCC----
Confidence 4688788753 5555666665 5557999999999998887642210 0011111121211 11235899986321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....++|++||.++++..
T Consensus 245 ---------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12356777889999999987754
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.059 Score=42.19 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=66.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~~l 83 (210)
..+||-+|+++|.....+.+. +..-|++++.|...-.......++.+|+--+.-|+..... ..-...|+|++.-.
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaDva- 235 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFADVA- 235 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEeccCC-
Confidence 357999999999988877765 3345999999975433333333333677777778775320 12235777775321
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
......-+.-+..-.||+||.|++.-
T Consensus 236 --------qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 236 --------QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred --------CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 22445555667888999999997753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=44.64 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=64.3
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-----------CC-C----
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 68 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 68 (210)
...+|+=+|||. |..+...++. |. +|+++|.+++.++.+++.- .++...|..+ +. .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHH
Confidence 457899999997 6666666666 55 8999999999999888742 2222221111 00 0
Q ss_pred ----CCC--CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 69 ----FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 69 ----~~~--~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.+ +.+|+|+....... .+.+..+.++..+.+||||.++.+..
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg-------~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPG-------KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCc-------ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 36999997543211 12233335999999999999887765
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.03 Score=39.39 Aligned_cols=45 Identities=9% Similarity=-0.126 Sum_probs=40.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
...+|+|||++-|..+..++-.|.+.|++++.++...+.+++..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence 345799999999999999999999999999999999999988764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.025 Score=45.76 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCcEEEEcccCCC-CCCCCCcccEEEECCccchh-ccCC----C----chHHHHHHHHHHHHhccCCcEEEEE
Q 028385 54 PQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSL-MCGT----N----APISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 54 ~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~~-~~~~----~----~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+..++++|+.+. ..+++++||+|++...+.-- .+.. . -..-....+.++.|+|||||.+++.
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3457888998884 23678899999997654210 0000 0 0122357899999999999999875
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.59 Score=34.68 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=62.3
Q ss_pred EeCCCCchhHHHHHHc-C-CCcEEEEeCCHH--HHHHHH---HhhcCC--CCcE-EEEcccCCCCC---CCCCcccEEEE
Q 028385 13 RRAAPSIVMSEDMVKD-G-YEDIVNIDISSV--AIDMMK---MKYEEI--PQLK-YLQMDVRDMSF---FEDESFDAVID 79 (210)
Q Consensus 13 diGcG~G~~~~~l~~~-~-~~~v~~vD~s~~--~~~~a~---~~~~~~--~~v~-~~~~d~~~~~~---~~~~~fD~Vi~ 79 (210)
=+|=|.=+++..+++. + ..++++.-++.. ..+.-. ++.... .++. ....|+.++.. ...+.||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3566666677777765 3 446666655443 222111 111111 2232 34457777651 35788999998
Q ss_pred CCccchhccCC--------CchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 80 KGTLDSLMCGT--------NAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~~~~~--------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++.... .+. .++.-+..++..+.++|+++|.+.++-...
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 876432 111 233456788999999999999997776553
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.015 Score=39.53 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDI 38 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~ 38 (210)
...-.|||||+|.+..-|.+.|+ .=.|+|.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 34679999999999999988887 6778885
|
; GO: 0008168 methyltransferase activity |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.086 Score=47.30 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCEEEeCCCCchhHHHHHHc----CC-CcEEEEeCCHHHHHHHHHhh---cCC--------CCcEEEEcccCCCCCCCC-
Q 028385 9 RDTCRRAAPSIVMSEDMVKD----GY-EDIVNIDISSVAIDMMKMKY---EEI--------PQLKYLQMDVRDMSFFED- 71 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~---~~~--------~~v~~~~~d~~~~~~~~~- 71 (210)
..|+=+|+|-|-+....++. +. .++++||-++.++...+.+. ... ..|+++..|++.+. .+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~-~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA-TAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc-cccc
Confidence 45899999999988766553 22 27999999966433333221 222 24899999999975 221
Q ss_pred ----------CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccC----CcE
Q 028385 72 ----------ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP----GGI 112 (210)
Q Consensus 72 ----------~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp----gG~ 112 (210)
+.+|+||+- ++-+....+-..+.|.-+.+.||+ +|+
T Consensus 781 ~~s~~~P~~~gKaDIVVSE-----LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSE-----LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehHh-----hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 369999872 222222334456778888888876 775
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.041 Score=42.76 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=50.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC----cEEEEc-ccCC-CCC--CCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ----LKYLQM-DVRD-MSF--FEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~----v~~~~~-d~~~-~~~--~~~~~fD~ 76 (210)
...++||||.|-.-.--.+-.+ ++ +.+|.|+++..++.|+.....+++ ++.... |-.. +++ -.++.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 4457899998864333222222 55 899999999999999988754432 333322 2111 111 22678999
Q ss_pred EEECCccchh
Q 028385 77 VIDKGTLDSL 86 (210)
Q Consensus 77 Vi~~~~l~~~ 86 (210)
++|+..+|.-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999998853
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.072 Score=44.18 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||.=+|+|.=+..++.. +..+++.-|+||.+++.++++.+-+ .+...+..|+..+-.-....||+|=. +
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 457999999999999988876 4448999999999999999988533 34555556665532012367888742 2
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.| ..+.-+++...+.++.||.+.++
T Consensus 129 --PF-----GSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 --PF-----GSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred --CC-----CCCchHHHHHHHHhhcCCEEEEE
Confidence 22 34455788888888899998664
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.087 Score=43.01 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+++|+=||-|.++.-+.+.|...+.++|+++.+.+.-+.+.. ....+|+.++. .++. .+|+++.......++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTTS
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceEe
Confidence 689999999999999999888789999999999998888873 78889998864 2343 599999865544332
Q ss_pred c-C-----CCchHHHHHHHHHHHHhccCC
Q 028385 88 C-G-----TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 88 ~-~-----~~~~~~~~~~l~~i~r~Lkpg 110 (210)
. + .+++..+...+-++.+.++|.
T Consensus 76 ~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk 104 (335)
T PF00145_consen 76 IAGKRKGFDDPRNSLFFEFLRIVKELKPK 104 (335)
T ss_dssp TTSTHHCCCCHTTSHHHHHHHHHHHHS-S
T ss_pred ccccccccccccchhhHHHHHHHhhccce
Confidence 1 1 123333444444455556775
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.11 Score=41.19 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCCEEEeCCCCchhHHHHHH---c---CCCcEEEEeCCH--------------------------HHHHHHHHhhcCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK---D---GYEDIVNIDISS--------------------------VAIDMMKMKYEEI- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~---~---~~~~v~~vD~s~--------------------------~~~~~a~~~~~~~- 53 (210)
-++.|+|.||=.|..+..+.. . ...++++.|.-+ ..++..+++....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 357899999988876655432 1 233577776422 1344455555432
Q ss_pred ---CCcEEEEcccCC-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 54 ---PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 54 ---~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++.++.+.+.+ +|..+.+.+-++.... +.. +.-..+|..++..|.|||++++-+|..+.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~--DlY-------esT~~aLe~lyprl~~GGiIi~DDY~~~g 217 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC--DLY-------ESTKDALEFLYPRLSPGGIIIFDDYGHPG 217 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE-----SH-------HHHHHHHHHHGGGEEEEEEEEESSTTTHH
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec--cch-------HHHHHHHHHHHhhcCCCeEEEEeCCCChH
Confidence 578999999876 3433444444443322 222 67789999999999999999998888743
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.3 Score=40.37 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=58.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~ 84 (210)
...+++|+=||-|.+..-+.+.++.-+.++|+++.+++.-+.+.. ...+...|+.... .+....+|+++......
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~---~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP---HGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC---CCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 456899999999999988888888779999999999988887774 3456667776643 12122789999876665
Q ss_pred hh
Q 028385 85 SL 86 (210)
Q Consensus 85 ~~ 86 (210)
.+
T Consensus 79 ~F 80 (328)
T COG0270 79 DF 80 (328)
T ss_pred ch
Confidence 54
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.03 Score=48.01 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=75.3
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC---CCCCCcccE
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS---FFEDESFDA 76 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~---~~~~~~fD~ 76 (210)
..+..+|||.=|++|.-+...++. +..++++-|.++.++...+++.+-. ..+.....|+..+- .-....||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 345678999999999999999886 5568999999999999888877432 33555666665531 123578999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|=. +- | .....+|+...+.++.||.+.++.
T Consensus 187 IDL----DP--y-----Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 187 IDL----DP--Y-----GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred Eec----CC--C-----CCccHHHHHHHHHhhcCCEEEEEe
Confidence 863 22 2 445667888899999999997754
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.57 Score=37.03 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh-cCCCCc--EEEEcccCC-CCCCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY-EEIPQL--KYLQMDVRD-MSFFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~-~~~~~v--~~~~~d~~~-~~~~~~~~fD~ 76 (210)
++....+|+|+|+..=+..+.+. + ...++-+|+|...++...+.. ...+.+ .-+++|.+- +...+...--+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45567899999999877776653 2 247999999999887554443 444544 344555443 11123222222
Q ss_pred E-EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE-EEcCCch
Q 028385 77 V-IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML-ITYGDPK 122 (210)
Q Consensus 77 V-i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~-~~~~~p~ 122 (210)
+ +...+ .|..++.+...++.++...|+||-.|++ +++..|.
T Consensus 157 ~~flGSt-----lGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~A 199 (321)
T COG4301 157 FVFLGST-----LGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPA 199 (321)
T ss_pred EEEeccc-----ccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHH
Confidence 2 22223 3344778899999999999999998877 4444444
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.065 Score=41.89 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=39.7
Q ss_pred EEEEcccCCC-CCCCCCcccEEEECCccch-hc--cC-----CCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 57 KYLQMDVRDM-SFFEDESFDAVIDKGTLDS-LM--CG-----TNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 57 ~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~-~~--~~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+++++|+.+. ..++++++|+|+......- .. .+ ....+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677887663 2378999999999765520 00 01 011123467899999999999988753
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.4 Score=39.43 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=53.3
Q ss_pred EEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 11 TCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
|+|+-||-|.++.-+.+.|..-+.++|+++.+.+.-+.+.. + .+..+|+.++..-.-..+|+++.......+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 68999999999999988888667889999999998888773 3 445678877641112258999887554433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.064 Score=41.27 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=62.8
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhc----------------------C------
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYE----------------------E------ 52 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~----------------------~------ 52 (210)
+..+...+-|-.||+|.+.--+.-. ....|++.|+++++++.|+++.. +
T Consensus 48 ~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eA 127 (246)
T PF11599_consen 48 EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEA 127 (246)
T ss_dssp SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHH
Confidence 3456678999999999887655332 34579999999999999987431 0
Q ss_pred ----------------CCCcEEEEcccCCCC---C-CCCCcccEEEECCccchhc-cC-CCchHHHHHHHHHHHHhccCC
Q 028385 53 ----------------IPQLKYLQMDVRDMS---F-FEDESFDAVIDKGTLDSLM-CG-TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 53 ----------------~~~v~~~~~d~~~~~---~-~~~~~fD~Vi~~~~l~~~~-~~-~~~~~~~~~~l~~i~r~Lkpg 110 (210)
.......+.|+.+.. . -.....|+|+..-..-++. +. ..+......++..++.+|-.+
T Consensus 128 l~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~ 207 (246)
T PF11599_consen 128 LESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER 207 (246)
T ss_dssp HHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence 012456777776621 0 1223469999865544432 11 135567889999999999555
Q ss_pred cEEEE
Q 028385 111 GIYML 115 (210)
Q Consensus 111 G~~~~ 115 (210)
+++.+
T Consensus 208 sVV~v 212 (246)
T PF11599_consen 208 SVVAV 212 (246)
T ss_dssp -EEEE
T ss_pred cEEEE
Confidence 55544
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.79 Score=37.34 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-C----CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-M----SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~----~~~~~~~fD~Vi~~~ 81 (210)
..+||..|+|. |..+..+++.-..++++++.++...+.+++.. ++.+..+-.. . .....+.+|+|+...
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 45788888763 67777777763347999999999888875532 1111111110 0 002356799998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ....+.++.+.|+++|.++....
T Consensus 241 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 G-------------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEECC
Confidence 1 13457788999999999987654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.1 Score=44.84 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=73.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC----C--CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM----S--FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~----~--~~~~~~fD~V 77 (210)
..+.+|-+|-|.|.+...+..+ +..++++++++|.|++.|++...- ..+.++...|..+. . .-.+..||++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 3467889999999998877655 556899999999999999987631 12333343443331 0 1246689988
Q ss_pred EEC---CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDK---GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~---~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.. ---|.+.| ..+.--.+.++..+..+|.|.|.|++--
T Consensus 375 ~~dvds~d~~g~~~-pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQC-PPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred EEECCCCCcccCcC-CchHHHHHHHHHHHhhccCccceEEEEE
Confidence 752 11222212 1223356788999999999999996643
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.25 Score=34.43 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=57.8
Q ss_pred CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEECCccchhccCCCc
Q 028385 18 SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDKGTLDSLMCGTNA 92 (210)
Q Consensus 18 ~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~~~l~~~~~~~~~ 92 (210)
-|..+..+++.-..+|+++|.++.-.+.+++.-.. .+...+-.+. ...+...+|+|+..-.
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---------- 67 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---------- 67 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESSS----------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEecC----------
Confidence 46777788876336999999999999998875421 2222222211 1133458999997422
Q ss_pred hHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 93 PISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 93 ~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
....++...++|+++|.++++....
T Consensus 68 ---~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ---SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2457888899999999998876543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.75 Score=36.73 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-----CCCcEEEEcccCC-CC------CCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-----IPQLKYLQMDVRD-MS------FFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~~-----~~~v~~~~~d~~~-~~------~~~~~~ 73 (210)
+...|+.+|||--.-...+.. +. .+..+|++ |++++.-++.+.+ ..+.+++..|+.. +. +|..+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PD-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CC-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 345699999998776655532 22 34455555 4455555555542 2578889899862 10 133344
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
--++++-+++.++ +.+...++++.+.+...||+.+++-.
T Consensus 159 ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~ 197 (260)
T TIGR00027 159 PTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDY 197 (260)
T ss_pred CeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 5578888888887 77889999999999888888886543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.23 Score=40.44 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---------C---C---------CcEEEEeCCH--HHHHHHHHhhcCC----------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---------G---Y---------EDIVNIDISS--VAIDMMKMKYEEI---------- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---------~---~---------~~v~~vD~s~--~~~~~a~~~~~~~---------- 53 (210)
...+||-||.|-|.=...++.. . . ..++.+|+.+ ..++.........
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3468999999997544333311 0 0 2799999885 5555554433111
Q ss_pred ---------CCcEEEEcccCCCCCCC-------CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 ---------PQLKYLQMDVRDMSFFE-------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ---------~~v~~~~~d~~~~~~~~-------~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+++|.+.|+..+. .+ ....++|...+++..++... ...-.++|.++...++||..+++++
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~-~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLS-EDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCC-hHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 25789999998875 21 23578888888887654332 5678899999999999999999987
Q ss_pred c
Q 028385 118 Y 118 (210)
Q Consensus 118 ~ 118 (210)
-
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 4
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.27 Score=44.57 Aligned_cols=107 Identities=11% Similarity=0.073 Sum_probs=62.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--------C-----CCcEEEEeCCH---HHHHHHHHh-----------hc-------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--------G-----YEDIVNIDISS---VAIDMMKMK-----------YE------- 51 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--------~-----~~~v~~vD~s~---~~~~~a~~~-----------~~------- 51 (210)
....+|||+|=|+|.+.....+. + .-+++++|..| +.+..+.+. ..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34468999999999876655421 1 13689999643 333322211 10
Q ss_pred CC-------C--CcEEEEcccCCC-CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 52 EI-------P--QLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 52 ~~-------~--~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. . +++...+|+.+. + .....||+++..+ +.-.+.+.-=-..+++++.|+++|||.+...+
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~-~~~~~~d~~~lD~----FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLP-QLDARADAWFLDG----FAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHH-hccccccEEEeCC----CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 00 1 244666777663 2 2235699998532 22222222223688999999999999995443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.69 Score=38.36 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeC---CHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDI---SSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~---s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+||=+|+|. |.++..+++. +. ++++++. ++.-.+.+++.-.. .+.....+..... ..+.+|+|+..-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~--~v~~~~~~~~~~~--~~~~~d~vid~~g 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGAT--YVNSSKTPVAEVK--LVGEFDLIIEATG 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCE--EecCCccchhhhh--hcCCCCEEEECcC
Confidence 34788888864 6666666665 54 7999986 67777777643211 1110011111111 1346899987422
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....+.+..++|++||.++++...
T Consensus 248 -------------~~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 -------------VPPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred -------------CHHHHHHHHHHccCCcEEEEEecC
Confidence 123577888999999998776543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.66 Score=37.74 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=54.1
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=+|||. |.++..+++. +...+..+|.++..++.+.+.. ++ |..+ ...+.+|+|+..-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-------~i--~~~~---~~~~g~Dvvid~~G---- 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-------VL--DPEK---DPRRDYRAIYDASG---- 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-------cc--Chhh---ccCCCCCEEEECCC----
Confidence 4688888864 6666767665 6645778898887776664321 11 1111 01346899987422
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-...++.+.+.|+++|+++++-.
T Consensus 210 ---------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ---------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ---------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778889999999987654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.2 Score=41.81 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=36.4
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHH
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKM 48 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~ 48 (210)
..|-..|+|+|+|.|.++..+.-.....|.+||-|....+.|++
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 34556799999999999999977644589999999888887764
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.78 Score=39.39 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=63.7
Q ss_pred CCEEEeCCCCchh--HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC--CCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVM--SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD--MSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~--~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~--~~~~~~~~fD~Vi~~ 80 (210)
..+.|+|.|.|.- +....-.. ...++.||.|..|.........+. ..+.+...-+.+ +|.-..+.||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 3456677665443 33222222 347999999999999888776541 111111101111 331234569999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+.++++.... ......-+.+.+..++|+.+++++-+.
T Consensus 282 h~l~~~~s~~---~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHELGSKF---SRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeccCCch---hhhhhhHHHHHhccCCCceEEEEecCC
Confidence 9999873321 223333445566678999999988554
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.48 Score=35.96 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=66.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~ 76 (210)
+.-|+|+|.-.|..+..++.. | ..+|.++|++-..++.+... .+++.|+.++-.+.. ...++.--+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 456899999888776666653 3 13799999987665544332 388999999987753 112222334
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++-..-|+. +.....++-..++|..|-++++-+
T Consensus 147 fvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 147 FVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 4444445555 666777888889999888886654
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.37 Score=39.34 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCCCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
|....++|.-||.|. |..+..++-.....|+-+|.|..-+++....+. .+++....+..++. ..-...|+||..-.
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~--~rv~~~~st~~~ie-e~v~~aDlvIgaVL 240 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG--GRVHTLYSTPSNIE-EAVKKADLVIGAVL 240 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC--ceeEEEEcCHHHHH-HHhhhccEEEEEEE
Confidence 555667888899886 777777776644589999999988887766654 34667767666665 33457898886322
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+- ....+.-+.+++.+.||||+.++=+
T Consensus 241 Ip-------gakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 241 IP-------GAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ec-------CCCCceehhHHHHHhcCCCcEEEEE
Confidence 21 1245667788889999999988644
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.1 Score=37.22 Aligned_cols=76 Identities=12% Similarity=0.051 Sum_probs=55.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-----------------
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE----------------- 70 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~----------------- 70 (210)
..+++|+=||-|.++.-+-+.|..-+.++|+++.+.+.-+.+....+.......|+.++. ..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~-~~~~~~~~~~~~~~~~~~~ 166 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT-LSHKEGVSDEEAAEHIRQH 166 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc-cccccccchhhhhhhhhcc
Confidence 568999999999999999888886789999999988877777532234455566666653 11
Q ss_pred CCcccEEEECCccc
Q 028385 71 DESFDAVIDKGTLD 84 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~ 84 (210)
-..+|+++......
T Consensus 167 ~p~~DvL~gGpPCQ 180 (467)
T PRK10458 167 IPDHDVLLAGFPCQ 180 (467)
T ss_pred CCCCCEEEEcCCCC
Confidence 12578888765544
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.2 Score=30.80 Aligned_cols=91 Identities=12% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCCCEEEeCCCCc-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-CCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSI-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l 83 (210)
.++++|.|+|.|-= ..+..++++|. .++++|+++. +.+ ..++++..|+.+.. .. =..-|+|.+
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a~--~g~~~v~DDitnP~-~~iY~~A~lIYS---- 76 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TAP--EGLRFVVDDITNPN-ISIYEGADLIYS---- 76 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cCc--ccceEEEccCCCcc-HHHhhCccceee----
Confidence 35679999999874 45566677786 8999999886 111 45789999988732 11 123567765
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ ++.++++..+-.+.+.+ |..+++..++
T Consensus 77 --i----RpppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 77 --I----RPPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred --c----CCCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 2 34467777777777754 4556666554
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.64 Score=38.07 Aligned_cols=93 Identities=14% Similarity=0.277 Sum_probs=56.4
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+||-.|||. |..+..+++. +...+++++.++...+.+++... . .++..+ ..... ...+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~--~--~vi~~~~~~~~~~~-~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA--D--ETVNLARDPLAAYA-ADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC--C--EEEcCCchhhhhhh-ccCCCccEEEECC
Confidence 345788888765 5566666665 54468999999888886655321 1 112111 11121 1224599998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. ...++++.+.|+++|+++...
T Consensus 240 g~-------------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GA-------------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CC-------------HHHHHHHHHHHhcCCEEEEEe
Confidence 21 234678889999999997664
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.34 Score=39.17 Aligned_cols=43 Identities=19% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
...|||.=||+|..+....+.+- +.+|+|++++.++.|++++.
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 34699999999999988877766 89999999999999999974
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.075 Score=42.88 Aligned_cols=69 Identities=12% Similarity=0.020 Sum_probs=51.5
Q ss_pred CCEEEeCCCCchhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
-.|.|+=+|-|.++. .+...+.+.|+++|.+|-.++..++..+.. .+.....+|-+... ++...|-|..
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnL 268 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNL 268 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheee
Confidence 357899999999999 666778889999999999999998887543 33445556655543 5666776664
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.98 Score=37.32 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCEEEeCCCC-chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+||=+|||. |.++..+++. +..+++++|.++.-++.+++ . ... .. . .++. .+..+|+|+..-.-
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~~~-~~-~--~~~~--~~~g~d~viD~~G~-- 232 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---DET-YL-I--DDIP--EDLAVDHAFECVGG-- 232 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---Cce-ee-h--hhhh--hccCCcEEEECCCC--
Confidence 4788899865 5555555553 45589999999988887764 2 111 11 1 1111 12248999863220
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
......+.+..++|++||+++++...
T Consensus 233 --------~~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 233 --------RGSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred --------CccHHHHHHHHHhCcCCcEEEEEeec
Confidence 11245678888999999999877643
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.36 E-value=2.5 Score=34.78 Aligned_cols=89 Identities=10% Similarity=-0.001 Sum_probs=54.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+||=.|+|. |..+..+++....++++++.++.-.+.+++.-.. .++ |..+. ..+.+|+++.... .
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~~---~ 233 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFAP---A 233 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECCC---c
Confidence 34788888753 4455555655333799999999888888764321 111 11111 1235787764321 1
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...+....+.|++||.++++-.
T Consensus 234 ----------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ----------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ----------HHHHHHHHHhhCCCcEEEEEec
Confidence 2357788899999999987654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.98 Score=39.65 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-----------CC-C----
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 68 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 68 (210)
...+|+=+|+|. |..+..+++. |. .|+.+|.++..++.+++.- .+++..|... +. .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lG-----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMG-----AEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEeccccccccccccceeecCHHHHHH
Confidence 346899999987 5666656655 54 7999999999888777621 2232222211 00 0
Q ss_pred ----CC--CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 ----FE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ----~~--~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+. -..+|+|+....+..- +.+.-..+++.+.+|||+.++-+.
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG~-------~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPGK-------PAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCCC-------CCCeeehHHHHhhCCCCCEEEEee
Confidence 11 2459999876543221 233456788899999999976544
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.8 Score=36.66 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-ccc-CCC-CCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDV-RDM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~-~~~-~~~~~~~fD~Vi~~~~l 83 (210)
.+||=+|+|. |.++..+++. +..+|+++|.++.-.+.+++.-.. .++. .+. ... .......+|+|+....
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 4688888754 4555555555 554599999999888887764321 1111 010 000 0012346899986321
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....++...+.|+++|.++++..
T Consensus 197 ------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13357777889999999987763
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.52 Score=36.84 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=37.9
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
..|||.=||+|..+....+.+. +++|+|+++...+.+.++...
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 4699999999999988888776 899999999999999988743
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.3 Score=28.97 Aligned_cols=88 Identities=16% Similarity=0.108 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCccchhccC
Q 028385 16 APSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGTLDSLMCG 89 (210)
Q Consensus 16 cG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~l~~~~~~ 89 (210)
||.|.++..+++. ...+++.+|.+++.++.+++.. +.++.+|..+.. ...-+..|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 5667777777654 3347999999999988887653 789999998843 123456887776322
Q ss_pred CCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 90 TNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 90 ~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.......+....|-+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 12333444455566677777765543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.9 Score=34.71 Aligned_cols=94 Identities=12% Similarity=0.024 Sum_probs=55.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~ 80 (210)
..+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-. . .++...-.+. .......+|+|+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA--T--HTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC--c--eEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 34688888754 5555666665 55459999999998888865321 1 1111110110 00123468999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-. -...+....+.+++||+++++..
T Consensus 253 ~g-------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG-------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC-------------CHHHHHHHHHHhccCCEEEEECC
Confidence 21 12346667789999999987653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=6 Score=31.88 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCccc
Q 028385 8 TRDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 8 ~~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
...+|-.|++.|. ++..+++.|. +|+.++.++..++...+.......+..+.+|+.+.... .-+..|
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3467877765542 2333444566 89999999887776655443223455556888764200 115689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 99987665
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.5 Score=35.31 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=55.4
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~~ 82 (210)
.+||=.|+|. |..+..+++. +..+|+++|.++.-.+.+++.-.. .++..+-.+. .....+.+|+|+..-.
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT----ATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc----eEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 4677788754 5555556665 554699999999988888653211 1111111110 0011236899986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.+++...
T Consensus 269 -------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12356677788999999987654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.7 Score=33.80 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~ 79 (210)
...+||-.|+|+ |.....+++....++++++.++...+.+++.... .+. +..+.. ....+.+|+|+.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~d~vi~ 207 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVI--DYKEEDLEEELRLTGGGGADVVID 207 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eec--cCCcCCHHHHHHHhcCCCCCEEEE
Confidence 345799999986 5566666665335899999998887777554211 111 111111 013457999986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- ...+..+.+.|+++|.++....
T Consensus 208 ~~~~-------------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 208 AVGG-------------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCC-------------HHHHHHHHHhcccCCEEEEEcc
Confidence 4221 1346677888999999977653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.68 E-value=5.7 Score=29.75 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=58.5
Q ss_pred EEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------------------CCCcEEEEcccCCCCCC
Q 028385 11 TCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------------------IPQLKYLQMDVRDMSFF 69 (210)
Q Consensus 11 vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------~~~v~~~~~d~~~~~~~ 69 (210)
|.=+|+|+ | .++..++..|. +|+.+|.+++.++.++++... ..++. ...|+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~--- 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA--- 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence 55577765 2 44444555676 999999999999988776532 02233 22333322
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
. ..|+|+-.-. +.+ +-.+++++++.+++.|+-.+...+.+-+.
T Consensus 77 ~--~adlViEai~-E~l-------~~K~~~~~~l~~~~~~~~ilasnTSsl~i 119 (180)
T PF02737_consen 77 V--DADLVIEAIP-EDL-------ELKQELFAELDEICPPDTILASNTSSLSI 119 (180)
T ss_dssp C--TESEEEE-S--SSH-------HHHHHHHHHHHCCS-TTSEEEE--SSS-H
T ss_pred h--hhheehhhcc-ccH-------HHHHHHHHHHHHHhCCCceEEecCCCCCH
Confidence 1 5788885432 223 77899999999999999998766654443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=5.3 Score=30.67 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=59.9
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
.+||-.|++. .++..+ ++.+. +|++++.++.-.+...+......++.++.+|+.+.... .-+..|
T Consensus 6 ~~vlItGa~g-~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 6 KKVAIIGVSE-GLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred cEEEEECCCc-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4688888754 333333 34466 89999999877665544433224678889998864200 013468
Q ss_pred EEEECCccchhccCCCc-----------hHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 76 AVIDKGTLDSLMCGTNA-----------PISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~-----------~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++........ ..... ......+++.+.+.++++|.+++++.
T Consensus 84 ~ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 84 GLVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred EEEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 77765432110 00000 01122345666667778888777653
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.9 Score=33.84 Aligned_cols=101 Identities=14% Similarity=0.253 Sum_probs=63.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~~ 68 (210)
+|-=||+|+ +.++..++..|. +|+..|.+++.++.++++..+. .+++ ...|....
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~-- 82 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF-- 82 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh--
Confidence 678889884 455555666676 8999999999999877654211 1111 12222111
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhc-cCCcEEEEEEcCCchhhH
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDPKARM 125 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~L-kpgG~~~~~~~~~p~~~~ 125 (210)
..-|+|+-. +.+ ..+-.+.++.++.+.+ +|+..+...+.+.|....
T Consensus 83 ---~~~d~ViEa-v~E-------~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 83 ---ADRQLVIEA-VVE-------DEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred ---CCCCEEEEe-ccc-------CHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 346888753 222 2366778889999998 788777655544454433
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=7.6 Score=30.53 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCEEEeCCCCc-hhHH----HHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcc
Q 028385 9 RDTCRRAAPSI-VMSE----DMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G-~~~~----~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
..+|-.|+++| .++. .+++.|. +|+.++.++...+..++..+....+.++.+|+.+... -.-+..
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 35788887652 4444 4445566 7888888765433222222222335577888877430 012568
Q ss_pred cEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+..+... ...+.+.++.. .+.+.+...|+.+|.++.++
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 90 DFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 999987654211 01111223332 23466677777788876654
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.5 Score=33.36 Aligned_cols=89 Identities=20% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCCEEEeCCCC-chhHHH-HHHcCCCcEEEEeCCHHHH-------------------HHHHHhhcCC-CCcEEEEcccCC
Q 028385 8 TRDTCRRAAPS-IVMSED-MVKDGYEDIVNIDISSVAI-------------------DMMKMKYEEI-PQLKYLQMDVRD 65 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~~-------------------~~a~~~~~~~-~~v~~~~~d~~~ 65 (210)
..+|+=+|+|. |.|... |++.|..+++.+|.+...+ +.+++++... |++++...+..-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 35688888865 777755 4566878899888776543 3334444332 666655544332
Q ss_pred CC----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHH
Q 028385 66 MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR 105 (210)
Q Consensus 66 ~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r 105 (210)
.+ .+-...||+|++ +++.+ .....++..+++
T Consensus 110 t~en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~ 144 (263)
T COG1179 110 TEENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRR 144 (263)
T ss_pred CHhHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHH
Confidence 21 244558999996 34444 444555555554
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=89.12 E-value=5.7 Score=29.33 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=59.7
Q ss_pred CCCEEEeCCCCchhHHHHHH--cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVK--DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
..+|+-|||-+-... +.+ ....+++..|++...-... .+ .|+.-|..... ..-.++||+|++...
T Consensus 26 ~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPP 95 (162)
T PF10237_consen 26 DTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEPEELPEELKGKFDVVVIDPP 95 (162)
T ss_pred CCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCChhhhhhhcCCCceEEEECCC
Confidence 357888888764333 333 2445899999987653321 22 46666665522 112579999999877
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ + ..+-..+....+..++|+++.+++++
T Consensus 96 F--l-----~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 96 F--L-----SEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred C--C-----CHHHHHHHHHHHHHHhCccceEEEec
Confidence 6 2 33555666777777779989887776
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=89.09 E-value=3.1 Score=33.95 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-----CcEEEEcccCCCC--------CCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMS--------FFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~--------~~~~~~ 73 (210)
+...|+-+|||--.-...+-......|+-+|. |+.++.=++.+++.. +++++..|+.+.. +|..+.
T Consensus 92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 34568999998754433332211124555553 556665555555443 7899999998532 244555
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-=++++-+++-++ +.+...++++.|...+.||..++...
T Consensus 171 pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 171 PTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 5678888888887 78899999999999998888875543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.3 Score=33.31 Aligned_cols=84 Identities=12% Similarity=-0.062 Sum_probs=52.5
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|.=||+|. |.++..+.+.+. +|+++|.++..++.+.+.. .+.....+. . .-...|+|+..-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp----- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALP----- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCC-----
Confidence 566788876 566666666666 8999999998888776542 111111111 1 1134688886433
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
.....++++++...++++..+
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCcEE
Confidence 244566788888888877544
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=88.86 E-value=7.4 Score=31.62 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=55.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~~~ 82 (210)
..+||-+|+|. |..+..+++. +...++.++.+++..+.+++... . .++..+-.+. .....+.+|+|+....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA--T--ETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC--e--EEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 35788888642 4555555555 44338999999988887754321 1 1221111110 0013457999996321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.++.+.|+++|.++.+..
T Consensus 236 -------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 12457777899999999977653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.63 E-value=11 Score=31.20 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCCCCCCCCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------C--------CCcEEEEccc
Q 028385 1 MATPSTGTRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------I--------PQLKYLQMDV 63 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~--------~~v~~~~~d~ 63 (210)
|.+| ..-.+|.=||+|+ ..++..++..|. +|+..|.+++.++.++++... . .++.+. .|+
T Consensus 1 ~~~~-~~i~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l 77 (321)
T PRK07066 1 MAVI-TDIKTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATI 77 (321)
T ss_pred CCCC-CCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCH
Confidence 3455 2334688899984 455666667777 899999999988876654321 0 112211 111
Q ss_pred CCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 64 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 64 ~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.+ .-..-|+|+-.- .+.+ .-...+++++.+.++|+.++..
T Consensus 78 ~~----av~~aDlViEav-pE~l-------~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 78 EA----CVADADFIQESA-PERE-------ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred HH----HhcCCCEEEECC-cCCH-------HHHHHHHHHHHHhCCCCeEEEE
Confidence 11 113458887542 2222 5677889999999999975533
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.54 E-value=8.4 Score=31.45 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHh--h--cCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMK--Y--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~--~--~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
++|+=+|+|. |.++..|.+.|. +|+.++.+++-++..++. . .............. .+ -..+.||+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~-~~-~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAE-TA-DAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCC-Cc-ccccccCEEEEECC
Confidence 5799999985 566666766665 899999987666666542 1 00011011111111 11 12357998875311
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.+...+++.+...+.++..++.+.-+
T Consensus 80 ----------~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 80 ----------AYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----------HHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 124567888899999999988776644
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.53 E-value=6.5 Score=32.46 Aligned_cols=79 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCCCCEEEeCCCCchh---HHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCC---------C
Q 028385 4 PSTGTRDTCRRAAPSIVM---SEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------E 70 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~---~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~ 70 (210)
++.....||=.|+..|.- +..+++.|. +|+.++.++..++...+.... ..++.++.+|+.+.... .
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 344445688888655432 233445566 799999998777665554432 24677888998774300 1
Q ss_pred CCcccEEEECCcc
Q 028385 71 DESFDAVIDKGTL 83 (210)
Q Consensus 71 ~~~fD~Vi~~~~l 83 (210)
-+.+|+++.+...
T Consensus 83 ~g~iD~lInnAg~ 95 (334)
T PRK07109 83 LGPIDTWVNNAMV 95 (334)
T ss_pred CCCCCEEEECCCc
Confidence 2468999887653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=9.2 Score=29.88 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=46.6
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----CC------CCcccE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FE------DESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~~------~~~fD~ 76 (210)
++|-.|++.| .++..+++.+. +|+.++.++..++...+... ..++.++.+|+.+... +. .+.+|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 4777776543 23334445566 89999999887776655443 2468889999987430 00 356899
Q ss_pred EEECCcc
Q 028385 77 VIDKGTL 83 (210)
Q Consensus 77 Vi~~~~l 83 (210)
|+.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 9887654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.38 E-value=3.1 Score=34.10 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCCCCC-CCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
..+||=+|+|. |..+..+++. +..++++++.+++-.+.+++.-. . .++.. +...+.. .....+|+|+...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga--~--~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA--D--FVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 34677778753 4555555655 55349999999988888765321 1 11111 1111100 1234699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. -...+....+.|+++|.+++...
T Consensus 240 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 240 G-------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 2 12345667788999999987654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.9 Score=34.67 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=49.5
Q ss_pred CCEEEeCCCC-chhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC--CCCcccEEEECCcc
Q 028385 9 RDTCRRAAPS-IVMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Vi~~~~l 83 (210)
.+||=||||. |... ..+++++..+|+..|.|.+..+.+..... .+++..+.|+.+.+.. --+.+|+|++-..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 5799999965 3333 33355564689999999988887766543 3688899999886410 11345999885443
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.4 Score=33.01 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc-----cCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.-. . .++... ... ......+.+|+|+.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga--~--~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI--T--DFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC--c--EEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 34688888754 5555555655 54469999999998888865321 1 122111 111 00011226999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
... ....+....+.+++| |.++++..
T Consensus 275 ~~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 275 CAG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CCC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 322 123466677788887 98877654
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.03 E-value=6.5 Score=31.03 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+||-.|+|. |..+..+++. +..++++++.+++..+.+++.- ....+ ... .... .....+|+|+....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~~~~--~~~--~~~~-~~~~~~d~vl~~~~--- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PADPV--AAD--TADE-IGGRGADVVIEASG--- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CCccc--ccc--chhh-hcCCCCCEEEEccC---
Confidence 34677778754 5555556655 5423999999988888766542 00111 100 0011 13446899986321
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.++.+..
T Consensus 169 ----------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ----------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ----------ChHHHHHHHHHhcCCcEEEEEec
Confidence 12356777889999999977643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=8.3 Score=30.24 Aligned_cols=74 Identities=8% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC--------CCCcccEE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--------EDESFDAV 77 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~--------~~~~fD~V 77 (210)
..+|=.|++.| .++..+++.|. +|++++.++..++...+......++.++.+|+.+.... ..+..|++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 45777776553 23344455576 79999999877766655442224688888998874300 02467999
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+.....
T Consensus 85 v~~ag~ 90 (263)
T PRK09072 85 INNAGV 90 (263)
T ss_pred EECCCC
Confidence 887554
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.9 Score=32.56 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=46.0
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
++++=+|||. +.++..|.+.+. +|+.+|.+++.++...+.. .....+++|..+.. ...-..+|++++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADE---LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhh---cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 3577788875 345555555666 8999999999877743321 34678899988843 234567898886
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.28 Score=40.47 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=71.0
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHH-------HhhcCC---C-CcEEEEcccCCCCCCCCCcccEEE
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMK-------MKYEEI---P-QLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-------~~~~~~---~-~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
-|.|-=.|||.+....+..|. -|.|.||+-.++...+ +++++. + -+.+..+|..+.+...+..||.|+
T Consensus 211 ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIv 289 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIV 289 (421)
T ss_pred EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeEEE
Confidence 479999999999888888776 8999999999888442 222222 2 367889999887733456899999
Q ss_pred ECCccchhc----cCC----C-----------c-------hHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLM----CGT----N-----------A-------PISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~----~~~----~-----------~-------~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
|.....--. .+. + + ..-...++.=..+.|..||++++.
T Consensus 290 cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 290 CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 964331100 000 0 0 012345577788899999998775
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.61 E-value=7.9 Score=31.63 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=53.5
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCC-CC-CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MS-FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~-~~-~~~~~~fD~Vi~~ 80 (210)
..+||-.|+|. |..+..+++. +...+++++.++...+.+++... . .++.. +... +. ...++.+|+|+..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~i~~~~~~~~~d~vld~ 243 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA--T--DIINPKNGDIVEQILELTGGRGVDCVIEA 243 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC--c--EEEcCCcchHHHHHHHHcCCCCCcEEEEc
Confidence 34677767642 5555666665 43468888888877776664321 1 11111 1100 00 0233579999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..- ...+.+..+.|+++|+++...
T Consensus 244 ~g~-------------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 244 VGF-------------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred cCC-------------HHHHHHHHHHhhcCCEEEEEc
Confidence 211 135777888999999987654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.6 Score=31.84 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---------------CCcEEEEcccCCCCCCCC
Q 028385 9 RDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---------------PQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 9 ~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---------------~~v~~~~~d~~~~~~~~~ 71 (210)
++|-=+|.|. | .++..+++.|. +|+|+|+++.-++...+..... .++.+. .|.... -
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a----i 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA----I 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH----H
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh----h
Confidence 3566677775 3 33444566677 9999999999888776543110 122221 222220 1
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhH
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 125 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~ 125 (210)
...|+++..-.-..-..+..+.....++++.+.+.++++-.+++-+...|....
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 235665542111100111223456889999999999997666555544555443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=7 Score=32.15 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCCC-CCCCCCccc-EEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDM-SFFEDESFD-AVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~~-~~~~~~~fD-~Vi~~ 80 (210)
..+||=.|+|. |..+..+++. +...+++++.++.-.+.+++.-. . .++.. +.... .......+| +|+..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga--~--~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA--M--QTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--eEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 34677778754 5555555655 55348899999988887754321 1 11111 10111 001234577 66652
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .-...+.+..+.|++||.+++...
T Consensus 237 -----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 237 -----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 2 113467778899999999987653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.28 E-value=6.8 Score=35.28 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=56.5
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
.+|+=+|+| ..+..+++ ++. +++.+|.+++.++.+++. ...++.+|+.+.. ...-+..|.+++..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 456666655 44444443 355 899999999999988752 4678999998853 12344677777521
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. + .+....+-...|.+.|...++.....
T Consensus 473 ~---------d-~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 473 N---------E-PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred C---------C-HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 1 1 22222333344556788777665433
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=9 Score=32.82 Aligned_cols=112 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcE-----E-EEcccCCCCCCCCCcccEEE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-----Y-LQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~-----~-~~~d~~~~~~~~~~~fD~Vi 78 (210)
.+|.=||.|. +.++..+++.|. +|+++|.++..++..+...... +.+. . ..+...... ..+.-|+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~--~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT--TPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec--ccccCCEEE
Confidence 5677788875 345555666676 8999999999888643221000 0000 0 000000000 012457776
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
..-.-..-..+.........+++.+.+.+++|..++..+...|..
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 532211000011122566777888999999887776655545543
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.10 E-value=8.5 Score=31.23 Aligned_cols=93 Identities=9% Similarity=-0.040 Sum_probs=54.3
Q ss_pred CCCEEEeCCC-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAP-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+||-.|+| .|..+..+++.-..++++++.++...+.+++... . .+....-.....-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~--~--~~~~~~~~~~~~~~~~~~d~vi~~~~---- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA--D--EVVDSGAELDEQAAAGGADVILVTVV---- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC--c--EEeccCCcchHHhccCCCCEEEECCC----
Confidence 3568888886 4555555666533379999999988887754321 1 11111100000001246899886321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+..+.+.|+++|.++.+.
T Consensus 235 ---------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---------cHHHHHHHHHhcccCCEEEEEC
Confidence 1235677788999999997764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.04 E-value=8.9 Score=29.57 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=45.1
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CCc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~~ 73 (210)
..++|=.|+ +|.++..++ +.+. +++.++.++..++...+.... ..++.++.+|+.+... +. -+.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456787775 444444444 4465 789999888766655444322 2468888999887430 00 146
Q ss_pred ccEEEECCc
Q 028385 74 FDAVIDKGT 82 (210)
Q Consensus 74 fD~Vi~~~~ 82 (210)
.|+|+....
T Consensus 85 id~vi~~ag 93 (250)
T PRK12939 85 LDGLVNNAG 93 (250)
T ss_pred CCEEEECCC
Confidence 899887654
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.54 E-value=15 Score=29.55 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=54.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----------------------CCcEEEEcccCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----------------------PQLKYLQMDVRD 65 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------~~v~~~~~d~~~ 65 (210)
+|.=||+|+ +.++..++..+. +|+.+|.+++.++.++++.... .++.+. .|...
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 82 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYES 82 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHHH
Confidence 577888885 345555666676 8999999999998765533210 011111 11111
Q ss_pred CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 66 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 66 ~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
. ...|+|+..-. + .......+++++.+.++++..+.
T Consensus 83 ---~--~~aDlVieav~-e-------~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 83 ---L--SDADFIVEAVP-E-------KLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ---h--CCCCEEEEcCc-C-------cHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 24688875321 1 11346788888999988887664
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=14 Score=28.97 Aligned_cols=106 Identities=10% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
..+|=.|+..| .++..+++.|. +|+.+|.++.-++...+... .++.++.+|+.+... + .-+..|+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 83 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVDI 83 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 46777776543 23333444566 89999998765554443331 357788899887530 0 0146899
Q ss_pred EEECCccchhccCCCchHHH-----------HHHHHHHHHhc-cCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISA-----------SQMLGEVSRLL-KPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~-----------~~~l~~i~r~L-kpgG~~~~~~ 117 (210)
++.+........-..+.++. ..+++.+.+.+ +++|.++.++
T Consensus 84 lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~is 136 (261)
T PRK08265 84 LVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFT 136 (261)
T ss_pred EEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 88875432110001122222 23444555555 5678776654
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.26 E-value=11 Score=30.30 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=53.6
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEE-E-cccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL-Q-MDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~-~-~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|+=+|+|. +.++..+++.+. +|+.++.++..++..++.......-... . .-..+.. ....+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 678889876 344455555565 8999999877766655432100000000 0 0011111 1257898886322
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
......+++.+...+.++..+++..-
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 13457778888888888777765543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.25 E-value=7.3 Score=31.72 Aligned_cols=89 Identities=16% Similarity=0.077 Sum_probs=52.8
Q ss_pred CCEEEeCCCC--chhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|.=||+|. +.++..+.+.+. .+|+++|.++...+.+++.- . ......+... .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g---~-~~~~~~~~~~----~~~~aDvViiavp~-- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG---L-GDRVTTSAAE----AVKGADLVILCVPV-- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC---C-CceecCCHHH----HhcCCCEEEECCCH--
Confidence 5788899886 344455555553 37999999998877765421 0 1111112111 11347988864332
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.....++.++...+++|..++.
T Consensus 77 --------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 --------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred --------HHHHHHHHHHHhhCCCCCEEEe
Confidence 3345667778788899886643
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.19 E-value=11 Score=30.91 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=54.6
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~~ 81 (210)
.+||-.|+|. |..+..+++. +...++++|.++...+.+++.-. . .++..+-.+. .......+|+|+...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~--~--~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA--T--DIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC--c--eEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 4677777653 4555555655 55469999999888777765321 1 1111111111 001234699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. -...+.++.+.|+++|.++.+..
T Consensus 244 g-------------~~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 244 G-------------GQDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 1 12457788899999999876543
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=86.16 E-value=5.3 Score=29.89 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=53.6
Q ss_pred CEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCC--------CCCCCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS--------FFEDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~--------~~~~~~fD 75 (210)
.|+.+|||--.....+.... ...++-+|. |++++.-++..+.. .+.+++.+|+.+.. ++..+.--
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred EEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 69999999988888887753 335555553 44555555444332 23678999998732 24456666
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHH
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEV 103 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i 103 (210)
++++-+++.++ +.+....+++.+
T Consensus 160 l~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 160 LFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp EEEEESSGGGS------HHHHHHHHHHH
T ss_pred EEEEcchhhcC-----CHHHHHHHHHHh
Confidence 88888888888 666777776654
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.13 E-value=8.6 Score=35.16 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFD 75 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD 75 (210)
..||=.|++.| ++..+ ++.|. +|+.+|.++..++.+.+......++.++.+|+.+... + ..+.+|
T Consensus 423 k~vLVTGasgg-IG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 423 KVALVTGAAGG-IGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CEEEEecCCCH-HHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 45777776443 33333 34466 8999999988776665544322467888889876420 1 123689
Q ss_pred EEEECCccchhc-cCCCchH-----------HHHHHHHHHHHhccC---CcEEEEEE
Q 028385 76 AVIDKGTLDSLM-CGTNAPI-----------SASQMLGEVSRLLKP---GGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~-~~~~~~~-----------~~~~~l~~i~r~Lkp---gG~~~~~~ 117 (210)
+|+.+...-... ....+.. ....+++.+.+.+++ ||.+++++
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 999876532110 0001111 234556677777766 67777654
|
|
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.65 E-value=14 Score=30.23 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=54.2
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-------CC-CCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-------MS-FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-------~~-~~~~~~fD~V 77 (210)
..+||-.|+|. |..+..+++. |...++.++.++...+.+++... . .++..+-.+ +. ......+|+|
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~--~--~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA--T--HTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC--c--EEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 34666677654 5555666665 54238999888887777654311 1 111111111 10 0234569999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+....- ...+.+..+.|+++|+++....
T Consensus 239 ld~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 239 IECTGA-------------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred EECCCC-------------HHHHHHHHHHhhcCCEEEEEcc
Confidence 964221 2257778899999999876643
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.3 Score=34.56 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=42.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~ 65 (210)
.-|.+||.|.|..+..+.+.+..+...++.++.++.-.+-..+.. .+..++.+|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 348999999999999999988878999999988776655444332 245566666654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=15 Score=33.35 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=45.2
Q ss_pred CCCEEEeCCCC-chhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~-l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
..+|+=+|||. |..... +.+.+. +++.+|.+++.++.+++. ...++.+|..+.. ...-+..|.+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 35788888875 443333 333355 899999999999988652 4678999999853 123346777775
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=85.42 E-value=6.4 Score=33.71 Aligned_cols=87 Identities=9% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+=+|+|. |......++. |. +|+.+|.++.-...|++. ..... +..+. . ...|+|+..-.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-----G~~~~--~~~e~--v--~~aDVVI~atG--- 266 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-----GYEVM--TMEEA--V--KEGDIFVTTTG--- 266 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-----CCEEc--cHHHH--H--cCCCEEEECCC---
Confidence 35789999987 5555555554 55 899999999877777642 12222 12111 1 24799986321
Q ss_pred hccCCCchHHHHHHHH-HHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLG-EVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~-~i~r~LkpgG~~~~~~~~ 119 (210)
. ..++. +..+.+|+||+++.+...
T Consensus 267 ---------~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 ---------N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred ---------C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 22344 458899999999777643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.73 E-value=19 Score=28.89 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=57.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------C------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------I------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------~------------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|. +.++..++..+. +|+++|.+++.++.++++.++ . .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577788884 566666667776 899999999998765532210 0 02221 122211
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+..|+|+..-. ....-...+++++.+.++++..+...+
T Consensus 80 --~~~aDlVi~av~--------e~~~~k~~~~~~l~~~~~~~~il~s~t 118 (282)
T PRK05808 80 --LKDADLVIEAAT--------ENMDLKKKIFAQLDEIAKPEAILATNT 118 (282)
T ss_pred --hccCCeeeeccc--------ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 134688875311 112445689999999999988774433
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.5 Score=35.57 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhc---CCCCcEE----EEcccCCCC----CCCCCcccEEEEC
Q 028385 16 APSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYE---EIPQLKY----LQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 16 cG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~---~~~~v~~----~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
.|+|.++..+.++ +..+++.+|.++..+-..++.+. ..+++.+ +.+|+.+.. .+.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 3667777777664 44589999999999988888773 2244654 488887743 2566789999999
Q ss_pred CccchhccCC
Q 028385 81 GTLDSLMCGT 90 (210)
Q Consensus 81 ~~l~~~~~~~ 90 (210)
..+-|+...+
T Consensus 85 AA~KhVpl~E 94 (293)
T PF02719_consen 85 AALKHVPLME 94 (293)
T ss_dssp -----HHHHC
T ss_pred hhcCCCChHH
Confidence 9998885333
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=84.58 E-value=5.2 Score=31.80 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHH
Q 028385 22 SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQML 100 (210)
Q Consensus 22 ~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l 100 (210)
+..+.+.+ ..+|+|.|.++..++.|++.- -+.-...+.+.. ..+|+|+..-. ......++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g----~~~~~~~~~~~~-----~~~DlvvlavP----------~~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG----IIDEASTDIEAV-----EDADLVVLAVP----------VSAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT----SSSEEESHHHHG-----GCCSEEEE-S-----------HHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC----CeeeccCCHhHh-----cCCCEEEEcCC----------HHHHHHHH
Confidence 44555665 358999999999998886542 111122222212 23599987543 36678999
Q ss_pred HHHHHhccCCcEEEE
Q 028385 101 GEVSRLLKPGGIYML 115 (210)
Q Consensus 101 ~~i~r~LkpgG~~~~ 115 (210)
+++...+++|+.+.=
T Consensus 63 ~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHCGS-TTSEEEE
T ss_pred HHhhhhcCCCcEEEE
Confidence 999999999987743
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=12 Score=29.99 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~~f 74 (210)
.++|-.|++.|. ++..+++.+. +|+.++.++. ..+...+.... ..++.++.+|+.+... +. -+..
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~i 125 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGRL 125 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 457888765542 3334445566 7888887642 23322222222 2457788899877430 10 1368
Q ss_pred cEEEECCccchhc--cCCCc-----------hHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLM--CGTNA-----------PISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~--~~~~~-----------~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+|+.+....... ....+ ......+++.+.+.++++|.+++++
T Consensus 126 D~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 126 DILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 9888765432110 11111 1234455667777777888877765
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.51 E-value=3.3 Score=34.91 Aligned_cols=102 Identities=11% Similarity=0.152 Sum_probs=54.2
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|+=+|+|. |..+...+.. |. +|+.+|.++...+.+...... .+.....+..++. -.-..+|+|+..-.+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--~v~~~~~~~~~l~-~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--RIHTRYSNAYEIE-DAVKRADLLIGAVLIP 241 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--eeEeccCCHHHHH-HHHccCCEEEEccccC
Confidence 346799998874 4555544444 55 799999998877666554421 1111111111111 0113589999743210
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+. ..+.-+-++..+.+|||+.++-+.+.
T Consensus 242 ----g~---~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 242 ----GA---KAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred ----CC---CCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 10 01111235555668999988765543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.27 E-value=12 Score=31.46 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-----ccCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~fD~Vi~ 79 (210)
..+||=.|+|. |..+..+++. +...++++|.++.-.+.+++.-. . .++.. +... +.....+.+|+|+.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa--~--~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV--T--DFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--EEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 34678888754 4555555554 55468999999988887755321 1 11111 1101 00011236899986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-. ....+....+.+++| |.++++-.
T Consensus 270 ~~G-------------~~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG-------------DTGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCC-------------ChHHHHHHHHhhccCCCEEEEECC
Confidence 322 123466677888998 99976543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.17 E-value=17 Score=28.02 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCH-HHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CC
Q 028385 8 TRDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISS-VAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DE 72 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~-~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~ 72 (210)
..++|-.|+..| ++..+ ++.+. +|++++.+. ...+......+. ..++.++.+|+.+... +. -+
T Consensus 6 ~k~vlItGasgg-iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSRG-IGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCCc-HHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 356888886443 33333 34465 788887653 233333222221 1357788889887430 00 13
Q ss_pred cccEEEECCccchhcc-C-----CCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~-~-----~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..|+|+.+........ . ..+......+++.+.+.++.+|.+++++
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 5888886653211000 0 0112234567777777777677776654
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.06 E-value=5.7 Score=32.29 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=54.0
Q ss_pred CCCCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---------CCCCCcc
Q 028385 7 GTRDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---------FFEDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---------~~~~~~f 74 (210)
....||-=|.|+| .++.++++++. .++..|+++.....-.+..++...++...+|+.+.. .-.-+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 3345777788777 34556666776 899999998877777666654346888999998853 0124679
Q ss_pred cEEEECCcc
Q 028385 75 DAVIDKGTL 83 (210)
Q Consensus 75 D~Vi~~~~l 83 (210)
|+++.+..+
T Consensus 116 ~ILVNNAGI 124 (300)
T KOG1201|consen 116 DILVNNAGI 124 (300)
T ss_pred eEEEecccc
Confidence 999998665
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=83.96 E-value=0.71 Score=32.51 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=41.1
Q ss_pred CcEEEEcccCC-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhccccc
Q 028385 55 QLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133 (210)
Q Consensus 55 ~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~ 133 (210)
.+++..+|+.+ ++ --...||+|+..+ +.....+.-=-..++++++++++|||.+ .+|+........+. ..
T Consensus 32 ~L~L~~gDa~~~l~-~l~~~~Da~ylDg----FsP~~nPelWs~e~~~~l~~~~~~~~~l--~Tys~a~~Vr~~L~--~a 102 (124)
T PF05430_consen 32 TLTLWFGDAREMLP-QLDARFDAWYLDG----FSPAKNPELWSEELFKKLARLSKPGGTL--ATYSSAGAVRRALQ--QA 102 (124)
T ss_dssp EEEEEES-HHHHHH-HB-T-EEEEEE-S----S-TTTSGGGSSHHHHHHHHHHEEEEEEE--EES--BHHHHHHHH--HC
T ss_pred EEEEEEcHHHHHHH-hCcccCCEEEecC----CCCcCCcccCCHHHHHHHHHHhCCCcEE--EEeechHHHHHHHH--Hc
Confidence 45778888866 33 2247899998532 2222222222368999999999999987 55554444433332 34
Q ss_pred ceEE
Q 028385 134 NWKI 137 (210)
Q Consensus 134 ~~~~ 137 (210)
++.+
T Consensus 103 GF~v 106 (124)
T PF05430_consen 103 GFEV 106 (124)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 5554
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=83.92 E-value=2.1 Score=34.21 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=38.0
Q ss_pred CCEEEeCCCCchhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~ 67 (210)
.-++|+|||.|.++..+++.- ...++.||....-. .+..+.... +.+.-+..|+.++.
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 468999999999999998752 34799999865322 222222221 35666777777754
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.83 E-value=16 Score=29.49 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=55.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|. +.++..+++.+. +|+.+|.+++.++.+.++.... .++++. .|...
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA--- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH---
Confidence 467788874 345555566676 8999999999998876542110 012211 22211
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-..-|+|+..-. + .......++.++.+.++++..+.+.+
T Consensus 78 -~~~~aD~Vi~avp-e-------~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 -AVADADLVIEAVP-E-------KLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred -hhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1134688885322 1 11345677888889998887664433
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=5.2 Score=33.16 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc----ccCC-CCCCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |.|..+..+++.-..++++++.++.-.+.+++.... . .++.. +... +.....+.+|+|+..
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa-~--~vi~~~~~~~~~~~i~~~~~~gvD~v~d~- 235 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF-D--EAFNYKEEPDLDAALKRYFPEGIDIYFDN- 235 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC-C--EEEECCCcccHHHHHHHHCCCCcEEEEEC-
Confidence 46888887 357777777776334799999998887777643321 1 11211 1111 000112468999863
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . ...+....++|++||.++++-
T Consensus 236 ----v-------G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 ----V-------G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred ----C-------C--HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 135677888999999997654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.55 E-value=5.1 Score=32.15 Aligned_cols=67 Identities=15% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+.-.|+|+-.|.++-.+.+++- .|+++|.-+-+-.... .+.|+....|..... -.....|-.+|.
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~d-----tg~v~h~r~DGfk~~-P~r~~idWmVCD 277 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLMD-----TGQVTHLREDGFKFR-PTRSNIDWMVCD 277 (358)
T ss_pred CCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhhc-----ccceeeeeccCcccc-cCCCCCceEEee
Confidence 446679999999999999999877 8999997664433322 245666666665543 124456665553
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.25 E-value=18 Score=29.17 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---------CC----------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------EI----------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~----------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|. +.++..++..+. +|+..|.+++.++.+.++.. .. .++.+. .|...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 4577788875 344555556666 89999999998887654321 00 112221 22211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
-...|+|+..-. + .......+++++...++++..++.
T Consensus 81 ---~~~aD~Vieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 ---LADCDLVIEAAT-E-------DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ---hcCCCEEEEcCc-C-------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 124688885321 1 113356778889999999887753
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=83.21 E-value=12 Score=30.38 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=55.3
Q ss_pred CCCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc----cCC-CCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD----VRD-MSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d----~~~-~~~~~~~~fD~Vi~~ 80 (210)
..+||=.|+ |.|..+..+++....++++++.+++-.+.+++.-. . .++..+ ... ......+.+|+|+..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa--~--~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF--D--VAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--C--EEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 346877774 35777777777633479999999888887754221 1 111111 111 000123469999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .. ..+....++|+++|+++...
T Consensus 215 -----~-------G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 215 -----V-------GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred -----C-------CH--HHHHHHHHHhCcCcEEEEec
Confidence 2 11 23577888999999998654
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=83.20 E-value=16 Score=29.77 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=55.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC----C-CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----M-SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~----~-~~~~~~~fD~Vi~~~ 81 (210)
..+||-.|+|. |..+..+++.-..+++++..+++..+.+++... . +++...-.+ + ...++..+|+++...
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~--~--~v~~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA--D--DTINVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC--C--EEecCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 34788888753 566666666633479999888888777754321 1 111111111 1 002345699998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. -...+.++.+.|+++|.++...
T Consensus 236 g-------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 236 G-------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred C-------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 1 1234677888999999987654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=83.19 E-value=27 Score=29.61 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCEEEeC-CC-CchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCC---CcEEEEcccC---CCC----C-CCCC
Q 028385 9 RDTCRRA-AP-SIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVR---DMS----F-FEDE 72 (210)
Q Consensus 9 ~~vLdiG-cG-~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~v~~~~~d~~---~~~----~-~~~~ 72 (210)
.+||=+| +| -|..+..+++. +..+|+++|.++.-++.+++...... .......|.. +.. . ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 4677786 34 46777777775 23479999999999998887532100 1111111111 110 0 1234
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.+|+|+.... ....+....+.++++|.+++.
T Consensus 257 g~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 6898886311 124567778889988876554
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.12 E-value=7.4 Score=32.40 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=49.5
Q ss_pred CCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=.|+|. |..+..+++.-..++++++.++.-...+.+.... . .++. .+........ +.+|+|+....
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga-~--~vi~~~~~~~~~~~~-~~~D~vid~~g---- 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA-D--SFLVSTDPEKMKAAI-GTMDYIIDTVS---- 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC-c--EEEcCCCHHHHHhhc-CCCCEEEECCC----
Confidence 3577788764 5565666665333788888776543322222211 1 1111 1111111011 24899986321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+.+..+.|++||.++.+..
T Consensus 257 ---------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 ---------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred ---------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12356778889999999987653
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=82.95 E-value=16 Score=33.82 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=64.9
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|+ +.++..++..|. +|+.+|.+++.++.++++.... .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 3688889986 455555666677 8999999999998877654210 122222 12111
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
-..-|+|+-. +.+.+ +-.++++.++.++++|+.++...+.+-+.
T Consensus 390 ---~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 390 ---FDNVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred ---hcCCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1357888754 33444 77889999999999999888654443333
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=21 Score=28.05 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCEEEeCCCCchhHHH----HHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSIVMSED----MVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~----l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
.++|-.|. +|.++.. ++..+. +|+.++.+++-++...+.... ..++.++.+|+.+... + ..+..
T Consensus 10 k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 10 KNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 45777775 4444444 344465 799999988766554433322 2356788888876320 0 12358
Q ss_pred cEEEECC
Q 028385 75 DAVIDKG 81 (210)
Q Consensus 75 D~Vi~~~ 81 (210)
|+++.+.
T Consensus 88 D~vi~~a 94 (264)
T PRK07576 88 DVLVSGA 94 (264)
T ss_pred CEEEECC
Confidence 9998765
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=82.19 E-value=3.7 Score=33.63 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |.|..+..+++. |..+|++++.+++-.+.+++.... . .++..+-.++. ...++.+|+|+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa-~--~vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF-D--AAINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC-c--EEEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 46877876 456777777776 443799999998877777654321 1 11211111110 01225699998632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . ..+.+..+.|+++|.++.+.
T Consensus 233 g------------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G------------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred C------------c--HHHHHHHHHhccCCEEEEEe
Confidence 1 1 12467788999999998654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.01 E-value=17 Score=30.16 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=54.3
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~~ 82 (210)
.+||-.|+|. |..+..+++. |...++++|.++...+.+++.-. ..++..+-.+. .......+|+|+..-.
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~----~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA----THVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----cEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 4677777653 5555556665 55469999999988877765321 11221111111 0011346899986321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+.++.+.|+++|.++...
T Consensus 264 -------------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 264 -------------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred -------------CcHHHHHHHHHhccCCEEEEeC
Confidence 1234678888999999987654
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.92 E-value=7.2 Score=31.45 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=55.0
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--------------------CCcEEEEcccCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------~~v~~~~~d~~~~~ 67 (210)
+|.=||+|. +.++..+++.+. +|+.+|.+++.++.++++.... .++.+ ..|....
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH-
Confidence 577788875 344455555566 8999999999888887653100 12221 1222211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
-..-|+|+..-. +.+ +-...+++++...++++-.+..
T Consensus 82 ---~~~aDlVieavp-e~~-------~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ---VKDADLVIEAVP-EDP-------EIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ---hcCCCEEEEecc-CCH-------HHHHHHHHHHHhhCCCCCEEEE
Confidence 134588876422 111 4567888899888887776533
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=81.92 E-value=5 Score=34.46 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=44.7
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
.+|+=+|+ |.++..+++ .+. +++.+|.+++.++..++.. .++.++.+|..+.. ...-+.+|.|++
T Consensus 232 ~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 232 KRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL---PNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC---CCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 45777777 555555544 344 8999999999988877654 45678899987642 123456888875
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=20 Score=28.19 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=43.9
Q ss_pred CEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCC---------CCCccc
Q 028385 10 DTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
+||-.|+.+ .++..+ ++.+. +|+.++.+..-.+...+.... ..++.+..+|+.+.... ..+.+|
T Consensus 2 ~vlVtGasg-gIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITGAAS-GLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 467677644 444444 44566 799999887766655443322 24677888898764300 114689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 80 ~lI~~ag~ 87 (270)
T PRK05650 80 VIVNNAGV 87 (270)
T ss_pred EEEECCCC
Confidence 99887554
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.32 E-value=15 Score=28.77 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=43.5
Q ss_pred CEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCC---------CCCccc
Q 028385 10 DTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
.||=.|+ +|.++..+ ++.+. +|+.++.++...+...+..... .++.+..+|+.+.... .-+..|
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4676665 44444444 34465 8999999977665554443222 4677888998774300 013579
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+|+.....
T Consensus 81 ~vi~~ag~ 88 (263)
T PRK06181 81 ILVNNAGI 88 (263)
T ss_pred EEEECCCc
Confidence 98876543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=23 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC----C-----CCCc
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----F-----EDES 73 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~----~-----~~~~ 73 (210)
..+||=.|+ +|.++..++ +.|. +|+.++.++..++...+..+.. .++.++.+|+.+... + .-+.
T Consensus 10 ~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 356888885 455554444 4466 7999999987766555554332 357788888887420 0 1245
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+|+.+...
T Consensus 88 ~d~li~~ag~ 97 (255)
T PRK07523 88 IDILVNNAGM 97 (255)
T ss_pred CCEEEECCCC
Confidence 8988887544
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=81.22 E-value=7.8 Score=32.71 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=61.1
Q ss_pred CCCCCCCEEEeCCCCchhH----HHHHHc----CCCcEEEEeC----CHHHHHHHHHhhcCC---CC--cEEEEc---cc
Q 028385 4 PSTGTRDTCRRAAPSIVMS----EDMVKD----GYEDIVNIDI----SSVAIDMMKMKYEEI---PQ--LKYLQM---DV 63 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~----~~l~~~----~~~~v~~vD~----s~~~~~~a~~~~~~~---~~--v~~~~~---d~ 63 (210)
.......|+|+|.|.|.-- ..++.+ +.-++|+++. +...++.+.++..+. -+ .+|... ++
T Consensus 107 ~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~ 186 (374)
T PF03514_consen 107 EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESL 186 (374)
T ss_pred ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCch
Confidence 3445667999999998433 333443 2236999999 777888777765321 12 334332 22
Q ss_pred CCCC----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 64 RDMS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 64 ~~~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+++. ....+..=+|-+...||++........++...+-...|.|+|.-..++
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 2221 122333334445666788753322223333444455557799855433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=28 Score=30.98 Aligned_cols=63 Identities=8% Similarity=0.056 Sum_probs=42.8
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
.+|+=+|||. .+..+++ ++. +++.+|.+++.++.+++ .....+.+|+.+.. ...-+..|.++.
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~-----~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGI-PLVVIETSRTRVDELRE-----RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-----CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 4566666654 4444443 354 89999999999888875 25788999998843 123457886664
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.00 E-value=21 Score=29.41 Aligned_cols=41 Identities=24% Similarity=0.123 Sum_probs=30.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMK 49 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~ 49 (210)
..+||=.|+|. |..+..+++. +. +++++|.++.-++.+++.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh
Confidence 35788899855 6666666665 54 799999999988888653
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=19 Score=27.47 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=41.4
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEEE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVID 79 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi~ 79 (210)
.||=.|+..| .++..+++.|. +|++++.++.-.+..++ ..++.+..+|+.+.. .+..+.+|+|+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~ 77 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQA----LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFV 77 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHh----ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence 4666666433 23444555576 89999988765443322 135677788887642 122357899887
Q ss_pred CCc
Q 028385 80 KGT 82 (210)
Q Consensus 80 ~~~ 82 (210)
+..
T Consensus 78 ~ag 80 (225)
T PRK08177 78 NAG 80 (225)
T ss_pred cCc
Confidence 654
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.80 E-value=15 Score=30.55 Aligned_cols=93 Identities=19% Similarity=0.104 Sum_probs=51.0
Q ss_pred CCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||-.|+|. |..+..+++.-..+++.++.+++....+.+.+.. . .++. .+...+... ...+|+|+..-.
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga-~--~~i~~~~~~~~~~~-~~~~D~vid~~g---- 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA-D--DYLVSSDAAEMQEA-ADSLDYIIDTVP---- 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC-c--EEecCCChHHHHHh-cCCCcEEEECCC----
Confidence 4577667643 5555666665333688888887766555444321 1 1111 111111101 125888886321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....+....+.|+++|.++.+..
T Consensus 254 ---------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ---------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---------chHHHHHHHHHhccCCEEEEECC
Confidence 12356667789999999877653
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.64 E-value=35 Score=31.56 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|.=||+|+ ..++..++..|. +|+..|.+++.++.++++.... .++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 3688899987 455555666677 8999999999998876653210 123222 222211
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
..-|+|+-. +.+-+ +-.+++++++.++++|+.++...+.+-|
T Consensus 391 ----~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 391 ----ERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred ----cCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 346888753 33334 7788999999999999988755444333
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=28 Score=28.00 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=51.4
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEE-EEcc-cCCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKY-LQMD-VRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~-~~~d-~~~~~~~~~~~fD~Vi~~~~ 82 (210)
++|+=+|+|. +.++..+++.+. +|+.++. +..++..++.--.. ..-.. .... ..+.. -....+|+|+..--
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vilavk 77 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPE-ELTGPFDLVILAVK 77 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHH-HccCCCCEEEEEec
Confidence 3678888886 345555566665 7999998 66666554321000 00000 0000 11111 11256898775311
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
......+++++...+.++..++...
T Consensus 78 ----------~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 78 ----------AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ----------ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 1345677888888888877665554
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=80.40 E-value=16 Score=33.83 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------------------CCcEEEEcccCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------------------PQLKYLQMDVRDMS 67 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------------~~v~~~~~d~~~~~ 67 (210)
.+|-=||+|+ +.++..++..|. +|+..|.+++.++.+.++..+. .++++. .|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH--
Confidence 3588889986 445555566677 8999999999999877654211 122222 12221
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+ ..-|+|+-. +.+.+ +-.+++++++.++++|+.++...+.+-+.
T Consensus 412 -~--~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i 455 (737)
T TIGR02441 412 -F--KNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSALPI 455 (737)
T ss_pred -h--ccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 1 346777743 33434 77889999999999999888665544333
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.37 E-value=14 Score=30.16 Aligned_cols=98 Identities=8% Similarity=0.066 Sum_probs=52.7
Q ss_pred CCCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCC-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEI-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..++|+=+|+|. +.++..|++.+. +|+.+..++. +..+++. ... .+..+....+...+ -....+|+|+..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 346899999985 556666666665 7888887652 2222211 000 11111101111111 123568988753
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
--- .....+++.+...+++++.++...-
T Consensus 80 vK~----------~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 80 LKT----------TANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred ecC----------CChHhHHHHHhhhcCCCCEEEEecC
Confidence 211 2335677788888999998766543
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=80.35 E-value=25 Score=30.94 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=65.2
Q ss_pred CCEEEeCCCCchhHHHHHHc---C--CCcEEEEeCCHHHHHHHHHhh--cCC--CCcEEEEcccCCCCCC-CCCcccEEE
Q 028385 9 RDTCRRAAPSIVMSEDMVKD---G--YEDIVNIDISSVAIDMMKMKY--EEI--PQLKYLQMDVRDMSFF-EDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~---~--~~~v~~vD~s~~~~~~a~~~~--~~~--~~v~~~~~d~~~~~~~-~~~~fD~Vi 78 (210)
..|.|..||+|.+.....+. + ...++|.+..+.+...++.+. ... +......+|-...+.+ ....||+|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 47999999999988655432 1 235999999999999998764 111 2222333333222112 245699999
Q ss_pred ECCccchh-ccCC-----------------CchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSL-MCGT-----------------NAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~-~~~~-----------------~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++..+.-. ..+. .....-..++..+..+|++||...++
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 87654321 0010 00123346688888999999975544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=80.35 E-value=21 Score=30.21 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=57.0
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc---ccCC-CCC-CCCCcccEEEECC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~fD~Vi~~~ 81 (210)
.+||=.|+|. |..+..+++. +...++.+|.++.-++.+++.-. . .+... +... +.. .....+|+|+..-
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga--~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC--E--TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC--e--EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3555577754 5555555554 55457777888888888876421 1 11111 1111 100 1234689998743
Q ss_pred ccchhcc-CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~-~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-..... .+....+....+++..+++++||.++++-..
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 263 GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 3110000 0000012235788888999999999887653
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.20 E-value=12 Score=30.32 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=69.8
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCC-CCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~ 85 (210)
+|+=+| -.-..+.+++-. -..++..+|+++..++.-.+-.++ ..|+.....|+++. |.-....||+.+...+ +-
T Consensus 155 ~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-eT 232 (354)
T COG1568 155 EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-ET 232 (354)
T ss_pred eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-hh
Confidence 377777 233333333332 234899999999999988776643 36789999999882 3222468999886432 12
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC---cEEEEEEcCCchhhHhhh
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYGDPKARMIHL 128 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg---G~~~~~~~~~p~~~~~~~ 128 (210)
+ .....++.+=...||.- |+|.+.....+...+..+
T Consensus 233 i-------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei 271 (354)
T COG1568 233 I-------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI 271 (354)
T ss_pred H-------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence 2 55667777767777766 788776655554443333
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.10 E-value=12 Score=27.77 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=23.3
Q ss_pred CEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCH
Q 028385 10 DTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISS 40 (210)
Q Consensus 10 ~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~ 40 (210)
+|+=+|||. | ..+..+++.|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578899984 4 455666677887899999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=80.09 E-value=13 Score=30.33 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=53.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCCC-CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~~-~~~~~~~fD~Vi~~~ 81 (210)
..+||-.|+|. |..+..+++. +...+++++-++...+.+++.-. ..++..+ ...+ .......+|+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~~~~~~~~~~~~d~vld~~ 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGA----DDTINPKEEDVEKVRELTEGRGADLVIEAA 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----CEEecCccccHHHHHHHhCCCCCCEEEECC
Confidence 34688888654 5555556665 54239999988887776643211 1111111 0111 101234599998641
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ....+..+.++|+++|.++.+.
T Consensus 236 g-------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 G-------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred C-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1235677889999999987664
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 210 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 2e-18 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-36
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 21/162 (12%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+S ++ G+ ++ ++D SSV + M+ Y +PQL++ MDVR + F SFD V++K
Sbjct: 56 LSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEK 114
Query: 81 GTLDSLMCGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 132
GTLD+L+ G P + S Q+L EVSR+L PGG ++ +T P R H
Sbjct: 115 GTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAY 174
Query: 133 YNWKIE-----------LYIIARPGFEKPGGCSSSMKSYLEP 163
Y W + LY++ + G + + L P
Sbjct: 175 YGWSLRHATYGSGFHFHLYLMHKGG-KLSVAQLALGAQILSP 215
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-12
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 32 DIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 90
I+IS + + + E +L + D+R + F +DES V GT+
Sbjct: 48 KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPF-KDESMSFVYSYGTI-----FH 101
Query: 91 NAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 140
+ + E+ R+LKPGG+ + R + ++L
Sbjct: 102 MRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLE 151
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-11
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 29 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88
G+ D++ D+ + ID K + P+ +++ D+ + FD ++ + ++M
Sbjct: 68 GH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQI-SETDFDLIV---SAGNVM- 118
Query: 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127
G A L + R L G +I +G + +
Sbjct: 119 GFLAEDGREPALANIHRALGADGR-AVIGFGAGRGWVFG 156
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 6e-11
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+ + + GY+ V +DIS V I K + E P L +++ D+ + F E+E F+A++
Sbjct: 67 GTYKLSRTGYK-AVGVDISEVMIQKGKERGEG-PDLSFIKGDLSSLPF-ENEQFEAIM-- 121
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133
++ + L E+ R+LK G + G + ++Y
Sbjct: 122 ----AINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 7e-11
Identities = 17/127 (13%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 25 MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84
+ G+ I ++ ++ +++ + + P + + + D+S + + ++
Sbjct: 59 LASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLSD-SPKRWAGLL---AWY 110
Query: 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-YGDPKARMIHLKWKVYNWKIELY--I 141
SL+ + L + ++ GG ++ G M H Y W +
Sbjct: 111 SLIHMGPGELPD--ALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQA 168
Query: 142 IARPGFE 148
+ GF+
Sbjct: 169 LETAGFQ 175
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 6e-10
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDES 73
+S ++ GY + IDI+S AI + + + ++ + +SF D S
Sbjct: 44 ISLELASKGYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-HDSS 101
Query: 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133
FD + L + P S+++ EV R+LKPG L+ +G ++ K ++
Sbjct: 102 FDFAV---MQAFLTSVPD-PKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLH 157
Query: 134 NWKI 137
++ I
Sbjct: 158 DFPI 161
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 8e-10
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVID 79
S + G+E +V +DIS I + + ++++ D R +SF ED++FD VI
Sbjct: 52 FSFLLEDYGFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSF-EDKTFDYVI- 108
Query: 80 KGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYMLITY 118
+ + +Q+ EV R+LKP G +++
Sbjct: 109 -----FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 5e-09
Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
IDI S ++M + ++ + D+ F + +FD + + + +
Sbjct: 80 HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF-PENNFDLIYSRDAI----LALS 134
Query: 92 APISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133
+ +++ + + LKP G ++ Y + ++K Y
Sbjct: 135 LE-NKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY 175
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 1e-08
Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 33 IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNA 92
+D+S +++ K ++ ++KY++ D F +E +D V+ ++ L
Sbjct: 71 FTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF--EEKYDMVVSALSIHHL-----E 123
Query: 93 PISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 133
++ +LK GI++ + I K
Sbjct: 124 DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 36 IDISSVAIDMMKM--KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 93
D ++++I ++ E + L +D+ +++F D +D ++ L L
Sbjct: 60 WDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--DRQYDFILSTVVLMFL-----EA 112
Query: 94 ISASQMLGEVSRLLKPGGIYMLITYGDP 121
+ ++ + R KPGG +++ D
Sbjct: 113 KTIPGLIANMQRCTKPGGYNLIVAAMDT 140
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 9/126 (7%)
Query: 27 KDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83
+ G + +DI+ V+I+ +++ + ++ + D + FD + +
Sbjct: 84 RAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS---SQ 140
Query: 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIA 143
S + S ++R L+PGG +++ P +I ++K + Y I
Sbjct: 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV---PSRDVILERYKQGRMSNDFYKIE 197
Query: 144 RPGFEK 149
E
Sbjct: 198 LEKMED 203
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-07
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 33 IVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 90
I +IDIS +++ + E+ I +K+LQ ++ + F ED SFD + L
Sbjct: 64 ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF-EDSSFDHIF---VCFVLEHLQ 119
Query: 91 NAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYI 141
+ P A L + ++LKPGG + + GD + H + K I
Sbjct: 120 S-PEEA---LKSLKKVLKPGGT-ITVIEGDHGSCYFHPEGKKAIEAWNCLI 165
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 8e-07
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVID 79
+ ++ + GY ++V +D+ + + + K +E ++++LQ DV +++F FDAV
Sbjct: 55 PTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVTM 111
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115
++M ++ +V+ LKPGG+++
Sbjct: 112 --FFSTIMYFDEE--DLRKLFSKVAEALKPGGVFIT 143
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 9e-07
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+ G + ++ ID+S + K K P + Y Q + D++ E ++++ V+
Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS-PVVCYEQKAIEDIAI-EPDAYNVVL-- 113
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117
+ +L + + +V LK G ++
Sbjct: 114 -SSLALHYIASFD----DICKKVYINLKSSGSFIFSV 145
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-06
Identities = 11/104 (10%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
++++++ Y ++ ++ K + +P K++ + + ++D ++ +
Sbjct: 107 ITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL-PPNTYDLIVIQ 165
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124
T L + + L P G R
Sbjct: 166 WTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKENCSTGDR 204
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 14/107 (13%)
Query: 22 SEDMV---KDGYEDIVNIDISSVAIDMMKMKYEEIPQ---LKYLQMDVRDMSFFEDESFD 75
D+V +V +DIS A+ Y P+ +++ DV + E FD
Sbjct: 78 GHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT--WRPTELFD 134
Query: 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122
+ D ++ P + LLKP G + + Y
Sbjct: 135 LIFDYVFFCAI-----EPEMRPAWAKSMYELLKPDGELITLMYPITD 176
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 22/168 (13%), Positives = 52/168 (30%), Gaps = 12/168 (7%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDA- 76
++ + + ++ +D+S A+++ + + Y +D E DA
Sbjct: 70 QTKFLSQFFPR-VIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDAN 127
Query: 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWK 136
+ + + + + LL G LI G + + Y
Sbjct: 128 IYMRTGFHHIPVEKRELL-----GQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQL 182
Query: 137 IELYIIARPGFEKPGGCSSSMKSYLEP-VPITDDGQLPAEFVLEDPDS 183
++ +PG ++ P I G+ + + + PD
Sbjct: 183 PYELLLVMEHGIRPGIFTAEDIELYFPDFEILSQGEGLFQSIHKLPDG 230
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88
+ I IS ++ + ++ + D D+ F ED SFDAV +L
Sbjct: 86 RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF-EDASFDAVW------ALES 138
Query: 89 GTNAPISASQMLGEVSRLLKPGGIYMLITY 118
+ P + L E++R+L+PGG + +
Sbjct: 139 LHHMP-DRGRALREMARVLRPGGTVAIADF 167
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-06
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 20 VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79
+E + + + ID+ AI + + + + D+ F E FD ++
Sbjct: 64 AFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQ--FSTAELFDLIV- 119
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGI 112
+ L + + + ++L PGG
Sbjct: 120 --VAEVLYYLED-MTQMRTAIDNMVKMLAPGGH 149
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-06
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 33 IVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 89
+ +D S ID+ + ++ + + D+ F +E D + +G + +
Sbjct: 72 VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF-RNEELDLIWSEGAIYN---- 126
Query: 90 TNAPISASQMLGEVSRLLKPGGIYML 115
I + L E + LK GG +
Sbjct: 127 ----IGFERGLNEWRKYLKKGGYLAV 148
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-06
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+ + + +D S+ I + +++ Q D+ D + D +DAV
Sbjct: 60 WTRHLSGLADR-VTALDGSAEMIAEAGRH--GLDNVEFRQQDLFDWTP--DRQWDAVF-- 112
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 127
L + A V + PGG+ + D + R+
Sbjct: 113 -FAHWLAHVPDDRFEA--FWESVRSAVAPGGVVEFVDVTDHERRLEQ 156
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-06
Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
S + + G+E +V +D S +M+++ E+ + ++ D+ F +F+AV+
Sbjct: 68 WSLFLQERGFE-VVLVDPSK---EMLEVAREKGVK-NVVEAKAEDLPF-PSGAFEAVL-- 119
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 135
L ++ A E+ R+L P G+ + ++ ++
Sbjct: 120 -ALGDVLSYVENKDKA---FSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQ 170
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
E K+ D +++S DM+ + +P Q D+RD F AV+
Sbjct: 54 HLEHFTKEFG-DTAGLELSE---DMLTHARKRLPDATLHQGDMRDFRL--GRKFSAVVS- 106
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115
S+ + + L+PGG+ ++
Sbjct: 107 -MFSSVGYLKTTE-ELGAAVASFAEHLEPGGVVVV 139
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-06
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 55 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114
+ ++ ED S+D + + D+ + ++P ++ E +R+LKP G+
Sbjct: 133 NITVKYGSFLEIPC-EDNSYDFIW---SQDAFL---HSP-DKLKVFQECARVLKPRGVMA 184
Query: 115 LITY 118
+
Sbjct: 185 ITDP 188
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-06
Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 21/109 (19%)
Query: 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMD 62
+G A K I +D S ++ + +++ +Q D
Sbjct: 52 SGPGALSIALA----------KQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101
Query: 63 VRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 111
V ++ ED D ++ + S+ + E+ R+LK GG
Sbjct: 102 VHNIPI-EDNYADLIV---SRGSVFFWEDVA----TAFREIYRILKSGG 142
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-06
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 32 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88
I ID+ I++ + ++K + + ++ F ++E D + +G + +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF-QNEELDLIWSEGAIYN--- 126
Query: 89 GTNAPISASQMLGEVSRLLKPGGIYML 115
I + + E S+ LK GG +
Sbjct: 127 -----IGFERGMNEWSKYLKKGGFIAV 148
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-06
Identities = 18/120 (15%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMSFFEDESFD 75
++ + G+ ++ +++S+ + + + E P + +Q D+ + D+ F
Sbjct: 96 LTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL--DKRFG 152
Query: 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 135
V+ + S+ A + V L+PGG + L++ +A +
Sbjct: 153 TVVI--SSGSINELDEA--DRRGLYASVREHLEPGGKF-LLSLAMSEAAESEPLERKQEL 207
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-06
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 29 GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87
GYE + +D SSV + K +E ++ +Q ++ D ++++ ++
Sbjct: 51 GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI-VADAWEGIVS-----IFC 103
Query: 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITY 118
++ + +V + LKPGG+++L +
Sbjct: 104 HLPSSLRQQ--LYPKVYQGLKPGGVFILEGF 132
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 9e-06
Identities = 23/115 (20%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 55 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114
++ ++ D F + + A +S M + + E SR LK GG Y+
Sbjct: 168 HVRSRVCNMLDTPF-DKGAVTAS---WNNESTM-----YVDLHDLFSEHSRFLKVGGRYV 218
Query: 115 LITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSY-LEPVPITD 168
IT KW +I + +M L P I D
Sbjct: 219 TITGCWNPRYGQPSKWVS---QINAHFE--CNIHSRREYLRAMADNRLVPHTIVD 268
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-05
Identities = 8/81 (9%), Positives = 19/81 (23%), Gaps = 17/81 (20%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGT 90
D S + + + P + + + + F ++
Sbjct: 72 RWAAYDFSPELLKLARANA---PHADVYEWNGKGELPAGLGAPFGLIVS----------R 118
Query: 91 NAPISASQMLGEVSRLLKPGG 111
P S + + L P
Sbjct: 119 RGPTSV---ILRLPELAAPDA 136
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 27 KDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85
D Y ++ +D+S +++ + K E + + D+R++ E DA+ DS
Sbjct: 52 ADHY-EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL--PEPVDAITI--LCDS 106
Query: 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138
L Q +RLL GG +L P K Y E
Sbjct: 107 LNYLQTEA-DVKQTFDSAARLLTDGGK-LLFDVHSPYKMETLFNGKTYATHAE 157
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-05
Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 24 DMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGT 82
++ +G + ID + + + +P ++L+ D ++ ++ +D I
Sbjct: 42 PLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL--NDKYDIAI---C 95
Query: 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYII 142
L+ + + ML ++ +K GG + +L + +
Sbjct: 96 HAFLL---HMT-TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGV 151
Query: 143 ARPGFEK 149
+ FE
Sbjct: 152 LQKLFES 158
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 22 SEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 81
+ G ++ +D+S + + + + Y + D+ + +SFD
Sbjct: 58 CRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLHL-PQDSFDLAY--- 112
Query: 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117
+ +L + ++ V + L PGG ++ T
Sbjct: 113 SSLALHYVEDVA----RLFRTVHQALSPGGHFVFST 144
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 16/96 (16%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVID 79
++E++ + +D+S + + K+ + + D+ +++ + FD +
Sbjct: 51 LTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI--NRKFDLIT- 106
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115
LDS + + VS LK GG+++
Sbjct: 107 -CCLDSTNYIID-SDDLKKYFKAVSNHLKEGGVFIF 140
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
++ ++ G + I+ S + K K + + + D S D ++
Sbjct: 59 LTNKLLLAGRT-VYGIEPSREMRMIAKEKLPK--EFSITEGDFLSFEV--PTSIDTIV-- 111
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119
+ + T+ + + + S+LL GG +
Sbjct: 112 -STYAFHHLTDDEKNV--AIAKYSQLLNKGGKIVFADTI 147
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80
+ + +++S+ DM+ + P D+RD S F AV
Sbjct: 64 HLRHLADSFG-TVEGLELSA---DMLAIARRRNPDAVLHHGDMRDFSL--GRRFSAVTC- 116
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115
S+ L + + P G+ ++
Sbjct: 117 -MFSSIGHLAG-QAELDAALERFAAHVLPDGVVVV 149
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 31/133 (23%)
Query: 33 IVNIDISSVAIDMMKM--KYEEIPQLKYLQMDVRDMSFFEDESFDAVI----------DK 80
+ D+ + + + + +++L+ D R + D ++ K
Sbjct: 231 VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-PRFFPEVDRILANPPHGLRLGRK 289
Query: 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL-------KWKVY 133
L L L LL PGG L+T + V
Sbjct: 290 EGLFHLY---------WDFLRGALALLPPGGRVALLTLRPALLKRALPPGFALRHARVVE 340
Query: 134 NWKIE--LYIIAR 144
+ ++++ +
Sbjct: 341 QGGVYPRVFVLEK 353
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-05
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
V ++ S M+ + P+ +++ + F ESFD V+ TL
Sbjct: 58 QKVGVEPSE---AMLAVGRRRAPEATWVRAWGEALPF-PGESFDVVLLFTTL------EF 107
Query: 92 APISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 144
++L E R+L+PGG +++ + + L ++ + + AR
Sbjct: 108 VE-DVERVLLEARRVLRPGG-ALVVGVLEALSPWAALYRRLGEKGVLPWAQAR 158
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-05
Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 36 IDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 93
ID+ ++ K + + ++ L+ + + D + D + + +
Sbjct: 68 IDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL-PDNTVDFIF-------MAFTFHEL 119
Query: 94 ISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFE 148
+ L E+ R+ KP +I + + +VY+ I+ G
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIR 174
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-05
Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 13/121 (10%)
Query: 32 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88
+V ID A+D Q+ + D + E +D + S
Sbjct: 145 QLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--REGYDLLT------SNGL 196
Query: 89 GTNAPISAS--QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPG 146
P A ++ + LKPGG + P A W + + +
Sbjct: 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLV 256
Query: 147 F 147
F
Sbjct: 257 F 257
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-05
Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 10/132 (7%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVI 78
+++ ++ + ++ +DI+ + K E Y ++D + E +S+D +
Sbjct: 93 ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP-EPDSYDVIW 151
Query: 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138
+ + L ++ L L+P GI ++ + ++ ++
Sbjct: 152 IQWVIGHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLD 206
Query: 139 LY--IIARPGFE 148
+ II G
Sbjct: 207 VVRRIICSAGLS 218
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-05
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 20/103 (19%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+++ D ++ M++ + P L + D R+ D+ DAV +N
Sbjct: 81 EVLGTDNAA---TMIEKARQNYPHLHFDVADARNFRV--DKPLDAVF-----------SN 124
Query: 92 API----SASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKW 130
A + + + + LK GG ++ G + I
Sbjct: 125 AMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-05
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 25 MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84
M+ G+ D+ D S + M + +++DAV L
Sbjct: 61 MLAAGF-DVDATDGSPELAAEASRR----LGRPVRTMLFHQLDA--IDAYDAVWAHACLL 113
Query: 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115
+ + +L + R LKPGG++
Sbjct: 114 HVP-----RDELADVLKLIWRALKPGGLFYA 139
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 7e-05
Identities = 16/106 (15%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFE-------DE 72
S +V++G+ + ++D S + + + + + + + ++ +
Sbjct: 71 DSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGD 129
Query: 73 SFDAVIDKGTLDSLMCGTNAPISAS---QMLGEVSRLLKPGGIYML 115
FDAVI +S ++ S L ++ +++PGG+ ++
Sbjct: 130 GFDAVIC--LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 8e-05
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 21 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVID 79
++ ++ GY + +D + +++ + K + +++ +Q D R + DES VI
Sbjct: 53 IALPLIARGYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPL-PDESVHGVI- 109
Query: 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121
+ P ++L E R+LKPGG +
Sbjct: 110 -----VVHLWHLVP-DWPKVLAEAIRVLKPGGALLEGWDQAE 145
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 8e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQL--------------KYLQMDVRDMSFFEDESFDAV 77
+V ++S A++ + E P + + D ++ + A
Sbjct: 46 HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAF 105
Query: 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 125
D+ + +L + + + L+ +LIT +A +
Sbjct: 106 YDRAAMIALP-----ADMRERYVQHLEALMPQACSGLLITLEYDQALL 148
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 1e-04
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 21/150 (14%)
Query: 30 YEDIVNIDIS----SVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAVIDK 80
+E I+ D+S A + + + + + D F + + D +
Sbjct: 61 FEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMIT-- 118
Query: 81 GTLDSLMCGTNAP-ISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 139
A + L+ G + Y DP +
Sbjct: 119 -------AVECAHWFDFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYG 171
Query: 140 YIIARPGFEKPGGCSSSMKSYLEPVPITDD 169
P +E+PG +++ L+ + +
Sbjct: 172 KQGLGPYWEQPGRS--RLRNMLKDSHLDPE 199
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 1e-04
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+D+S VAI +Y PQ+ + + F D S DA+I
Sbjct: 111 TTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPF-SDTSMDAIIR------------ 154
Query: 92 APISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYN 134
I A E++R++KPGG + T G ++ LK +YN
Sbjct: 155 --IYAPCKAEELARVVKPGGWVITATPGP--RHLMELKGLIYN 193
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 36 IDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI 94
+D +D + E+ Y Q+ + +D + +L+
Sbjct: 80 VDGDRTLVDAARAAGAGEVHLASYAQLAEAK--VPVGKDYDLIC---ANFALL-----HQ 129
Query: 95 SASQMLGEVSRLLKPGG 111
++L + LL PGG
Sbjct: 130 DIIELLSAMRTLLVPGG 146
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 45/125 (36%)
Query: 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMM-----KMKYEEIPQLKYLQ 60
G T +P ++ + +D + +M+ + + + +++ Q
Sbjct: 30 AGAGHTALAFSPY-----------VQECIGVDATK---EMVEVASSFAQEKGVENVRFQQ 75
Query: 61 MDVRDMSFFEDESFDAVI---------DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 111
+ F D+SFD + D + + EV+R+LK G
Sbjct: 76 GTAESLPF-PDDSFDIITCRYAAHHFSDVR----------------KAVREVARVLKQDG 118
Query: 112 IYMLI 116
++L+
Sbjct: 119 RFLLV 123
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+ ++ S ++ + + + L+ ++ +DESFD + T+ C +
Sbjct: 67 IKIGVEPSERMAEIARKR-----GVFVLKGTAENLPL-KDESFDFALMVTTI----CFVD 116
Query: 92 APISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 144
P A L E R+LK GG ++ + + +++ K Y AR
Sbjct: 117 DPERA---LKEAYRILKKGGYLIVGIV--DRESFLGREYEKNKEKSVFYKNAR 164
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 45/125 (36%)
Query: 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMM-----KMKYEEIPQLKYLQ 60
TG AP + +V D++ D++ ++ Q++Y+Q
Sbjct: 46 TGGGHVANAFAPF-----------VKKVVAFDLTE---DILKVARAFIEGNGHQQVEYVQ 91
Query: 61 MDVRDMSFFEDESFDAVI---------DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 111
D M F DE F V + + E R+LK GG
Sbjct: 92 GDAEQMPF-TDERFHIVTCRIAAHHFPNPA----------------SFVSEAYRVLKKGG 134
Query: 112 IYMLI 116
+L+
Sbjct: 135 QLLLV 139
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 38.1 bits (89), Expect = 6e-04
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 32 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 91
+ IDI+ +A+ +K K++ + + + D D S D ++ +S +
Sbjct: 41 KLYCIDINVIALKEVKEKFDSV-------ITLSDPKEIPDNSVDFIL---FANSF-HDMD 89
Query: 92 APISASQMLGEVSRLLKPGGIYMLITY 118
++ EV R+LK G ++I +
Sbjct: 90 DK---QHVISEVKRILKDDGRVIIIDW 113
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 9e-04
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 128
EDES D + SLM GTN L E +R+LKPGG+ + + +R +
Sbjct: 111 LEDESVDVAV---FCLSLM-GTNIR----DFLEEANRVLKPGGLLKVA---EVSSRFEDV 159
Query: 129 KW 130
+
Sbjct: 160 RT 161
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 210 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.87 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.86 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.85 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.84 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.81 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.81 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.81 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.81 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.81 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.8 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.8 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.79 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.79 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.79 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.79 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.79 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.79 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.78 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.78 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.78 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.78 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.78 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.78 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.78 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.78 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.78 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.77 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.77 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.77 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.77 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.77 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.76 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.76 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.76 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.76 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.76 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.76 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.76 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.76 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.76 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.76 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.75 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.74 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.74 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.74 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.73 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.73 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.72 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.72 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.72 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.72 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.7 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.7 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.7 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.69 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.69 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.69 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.69 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.68 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.68 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.68 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.68 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.67 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.67 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.67 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.67 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.67 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.66 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.66 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.66 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.66 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.65 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.65 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.65 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.65 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.65 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.64 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.64 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.64 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.64 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.64 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.64 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.64 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.63 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.63 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.63 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.62 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.62 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.62 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.62 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.62 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.62 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.62 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.61 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.61 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.61 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.61 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.61 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.61 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.61 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.6 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.6 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.59 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.59 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.59 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.59 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.58 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.58 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.58 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.58 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.57 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.57 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.57 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.57 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.57 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.57 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.56 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.56 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.56 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.56 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.56 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.56 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.55 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.55 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.55 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.55 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.55 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.55 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.55 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.55 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.54 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.54 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.54 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.53 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.53 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.53 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.53 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.53 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.52 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.51 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.5 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.5 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.5 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.5 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.5 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.5 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.5 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.49 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.49 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.49 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.49 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.49 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.49 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.49 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.49 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.48 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.48 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.48 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.48 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.48 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.47 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.47 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.47 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.47 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.47 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.47 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.47 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.46 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.46 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.46 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.46 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.46 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.45 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.44 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.44 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.44 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.44 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.43 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.43 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.42 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.42 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.42 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.41 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.41 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.41 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.41 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.41 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.41 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.41 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.4 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.4 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.37 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.36 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.35 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.33 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.33 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.32 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.31 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.31 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.3 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.3 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.28 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.26 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.24 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.23 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.23 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.23 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.2 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.19 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.17 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.17 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.16 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.15 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.14 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.13 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.13 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.08 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.05 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.96 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.95 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.94 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.94 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.91 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.89 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.88 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.88 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.88 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.85 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.84 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.82 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.8 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.8 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.77 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.73 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.72 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.66 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.62 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.61 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.59 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.57 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.46 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.46 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.44 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.39 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.3 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.3 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.26 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.08 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.98 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.94 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.91 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.81 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.75 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.69 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.55 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.53 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.47 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.44 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.38 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.38 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.29 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.11 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.8 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.78 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.46 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.45 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.44 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.3 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 96.25 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.24 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.0 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.9 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.79 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.7 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.66 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.34 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.33 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.26 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.23 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.92 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.86 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.8 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.79 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.65 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.62 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.58 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.38 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.38 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 94.35 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.33 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.11 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.01 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.94 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.94 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 93.81 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.78 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 93.77 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.71 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.7 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.69 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.68 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.64 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.41 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.4 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 93.36 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.28 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.09 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 93.06 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.01 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.99 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 92.95 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.64 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.56 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 92.41 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.4 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.38 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 92.31 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.25 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.14 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.98 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.95 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.67 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.61 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.42 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.18 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.12 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.08 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.08 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.05 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 91.04 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 90.94 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 90.9 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 90.83 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.83 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.76 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 90.72 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.69 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.59 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.46 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.22 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.12 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.08 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 90.05 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.97 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 89.97 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 89.78 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.72 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.59 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.58 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.58 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 89.47 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 89.45 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.17 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.15 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.96 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 88.87 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 88.83 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 88.66 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 88.38 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 88.33 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.32 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 88.1 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 87.98 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 87.66 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 87.59 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 87.43 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 87.4 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 87.15 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 87.11 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.87 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 86.84 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 86.63 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 86.54 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 86.23 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 86.15 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 85.92 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 85.91 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 85.45 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 85.41 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 85.16 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 85.15 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.1 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 84.98 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 84.96 | |
| 3trk_A | 324 | Nonstructural polyprotein; hydrolase; 2.40A {Chiku | 84.9 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 84.83 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 84.71 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.68 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.34 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.3 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 84.17 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.08 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 83.44 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 83.44 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 83.41 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 83.32 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 83.3 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 83.13 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 83.02 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 82.95 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 82.93 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 82.91 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 82.86 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 82.34 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 82.13 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 82.06 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 81.89 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 81.88 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 81.75 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 81.6 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 81.56 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 80.83 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 80.72 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 80.67 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 80.61 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 80.56 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 80.48 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 80.26 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 80.1 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 80.01 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-21 Score=145.03 Aligned_cols=131 Identities=33% Similarity=0.602 Sum_probs=110.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.++++....+++++.++|+.+++ +++++||+|+++.+++++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~ 120 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDAL 120 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC-SCSSCEEEEEEESHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC-CCCCcccEEEECcchhhh
Confidence 4468999999999999999998765899999999999999999876678999999999988 888999999999999887
Q ss_pred ccCCC--------chHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 87 MCGTN--------APISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 87 ~~~~~--------~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
.+... ...+..++++++.++|||||.+++.++..+......+....+.|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 180 (215)
T 2pxx_A 121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLR 180 (215)
T ss_dssp TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGGCEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhccccCcEEE
Confidence 32211 13578999999999999999999999988877766665555667764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=148.47 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=90.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------------CCCcEEEEcccCCCCCCCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQLKYLQMDVRDMSFFED- 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------~~~v~~~~~d~~~~~~~~~- 71 (210)
...+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++... ..+++++++|+.+++ +.+
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~ 99 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT-ARDI 99 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST-HHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC-cccC
Confidence 446899999999999999999877 899999999999999988642 368999999999988 665
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++||+|++..+++|+ +..+..+++++++|+|||||+++++.
T Consensus 100 ~~fD~v~~~~~l~~l-----~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 100 GHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp HSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred CCEEEEEECcchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 799999999999998 55677889999999999999855554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=153.86 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=89.8
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++ .++++++++|+++++ +++++||+|++..++||+
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h~~- 112 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTG-LPPASVDVAIAAQAMHWF- 112 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC----CTTEEEEECCTTCCC-CCSSCEEEEEECSCCTTC-
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh----cCCceeehhhhhhhc-ccCCcccEEEEeeehhHh-
Confidence 46899999999999999998875 89999999999987754 378999999999999 999999999999999887
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+..+++++++|+|||||.+++..++.+
T Consensus 113 -------~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 113 -------DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 356899999999999999999887654
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=149.38 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=91.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++.+.. .+++++++|+.+++ + +.||+|++.
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~--~~~d~v~~~ 146 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I--ENASMVVLN 146 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-C--CSEEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-c--cccccceee
Confidence 3468999999999999999886 2348999999999999999987543 57999999999887 5 469999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.++||+ +..+...++++++|+|||||.+++.+...
T Consensus 147 ~~l~~~-----~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 147 FTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp SCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeeeec-----CchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 999998 55677889999999999999999987654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=148.69 Aligned_cols=104 Identities=14% Similarity=0.206 Sum_probs=91.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------------------CCCCcEEEEcccCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------------------EIPQLKYLQMDVRDMS 67 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------------------~~~~v~~~~~d~~~~~ 67 (210)
...+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++.. ...+++|+++|+.+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 446899999999999999999987 89999999999999987763 2367999999999988
Q ss_pred CCCC-CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 68 FFED-ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 68 ~~~~-~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.+ ++||+|++..+++++ +..+...+++++.++|||||++++++
T Consensus 147 -~~~~~~FD~V~~~~~l~~l-----~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 147 -RANIGKFDRIWDRGALVAI-----NPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp -GGCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -cccCCCEEEEEEhhhhhhC-----CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 554 899999999999998 55678899999999999999997654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=144.75 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=93.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.++++.. ..+++.++++|+.+++ +++++||+|++..+++
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fD~V~~~~~l~ 114 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAAH 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCGG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCCCCEEEEEEhhhhH
Confidence 456899999999999999988865 99999999999999998873 2367999999999998 8999999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...+++++.++|||||.+++.+..
T Consensus 115 ~~-------~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 115 HF-------PNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp GC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hc-------CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 99 78899999999999999999987644
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=142.27 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=94.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.++++.. ..++.+.++|+.+++ +++++||+|++..+++|+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA-IEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC-CCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC-CCCCCeEEEEEchhhhhh
Confidence 557899999999999999999876689999999999999999876 468999999999998 889999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+..+++++++++|||||.+++...
T Consensus 122 -------~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 122 -------ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8899999999999999999988653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=138.43 Aligned_cols=103 Identities=10% Similarity=0.158 Sum_probs=94.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++. +++.++++|+.+++ +++++||+|++..+++|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLS-DSPKRWAGLLAWYSLIHM- 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGG-GSCCCEEEEEEESSSTTC-
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC---CCCeEEeCcccccc-cCCCCeEEEEehhhHhcC-
Confidence 56899999999999999999866 8999999999999999885 67999999999988 888999999999999998
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+..+...+++++.++|||||.+++..+..
T Consensus 116 ----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 116 ----GPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp ----CTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred ----CHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 44589999999999999999999887654
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-19 Score=136.23 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=94.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. ..+++++.++|+.+++ +++++||+|++..+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LPDNTVDFIFMAFT 115 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SCSSCEEEEEEESC
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CCCCCeeEEEeehh
Confidence 45689999999999999998874 3589999999999999999873 3357999999999988 88999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++|+ .+...+++++.++|||||.+++.++..
T Consensus 116 l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 146 (219)
T 3dh0_A 116 FHEL-------SEPLKFLEELKRVAKPFAYLAIIDWKK 146 (219)
T ss_dssp GGGC-------SSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hhhc-------CCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence 9999 788999999999999999999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=141.76 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=97.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||+|||+|.++..+++....+|+++|+|+.+++.++++....++++++++|+.+++ +++++||+|++..+++|
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 132 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE-FPENNFDLIYSRDAILA 132 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC-CCTTCEEEEEEESCGGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC-CCCCcEEEEeHHHHHHh
Confidence 34568999999999999999987233899999999999999999866578999999999998 88999999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ +..+...+++++.++|||||.+++.++.
T Consensus 133 ~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 133 L-----SLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp S-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-----ChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 8 6789999999999999999999998754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-19 Score=138.11 Aligned_cols=109 Identities=18% Similarity=0.296 Sum_probs=95.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.....++.++++|+.+++ ++ ++||+|++..+++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FE-EKYDMVVSALSIH 120 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CC-SCEEEEEEESCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CC-CCceEEEEeCccc
Confidence 44578999999999999999987 245899999999999999999876668999999999988 66 8999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
|+ +......++++++++|||||.+++.+...+
T Consensus 121 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 121 HL-----EDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 99 444556799999999999999999886543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=140.68 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=96.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||+|||+|.++..+++.+..+++++|+|+.+++.++++....++++++++|+.+++ +++++||+|++..+++|
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC-CCCCCeEEEEEcchhhh
Confidence 34578999999999999999887665799999999999999999866578999999999988 88899999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+ +..+...+++++.++|||||.+++.+.
T Consensus 171 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 L-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp S-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8 556789999999999999999998874
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=139.43 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||||||+|.++..+++.+. +++|+|+|+.+++.|+++... +++++++|+.++. ++++||+|++.++++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC--CSSCEEEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHcC--cCCcccEEEEhhHHHhh
Confidence 446899999999999999988766 899999999999999998754 7999999998873 67899999999999999
Q ss_pred ccCCCchHHHHHHHHHHH-HhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVS-RLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~-r~LkpgG~~~~~~~~~ 120 (210)
.+...++++++ ++|||||.+++.....
T Consensus 117 -------~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 117 -------DDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp -------SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred -------cCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 78899999999 9999999999887543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=138.85 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=94.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
....+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ..+++.+.++|+.+++ +++++||+|++..++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAA 97 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCG
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCch
Confidence 3456899999999999999988765 89999999999999998863 3367999999999998 889999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .+...+++++.++|||||.+++.+...
T Consensus 98 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 98 HHF-------SDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp GGC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred hhc-------cCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 999 788999999999999999999987653
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-19 Score=134.99 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. .++++.++|+.+++ ++ ++||+|++..+++|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFE-VP-TSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCC-CC-SCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcC-CC-CCeEEEEECcchhcC
Confidence 456899999999999999999865 89999999999999999875 57999999999988 77 999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+......+++++.++|||||.+++.+..
T Consensus 120 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 120 -----TDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp -----CHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred -----ChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 3333344999999999999999998744
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-19 Score=139.33 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=93.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++.+.. ++++++++|+.+++ +++++||+|++..+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEGA 123 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEESSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-CCCCCEEEEEEcCC
Confidence 445689999999999999999986669999999999999999987432 56999999999988 88999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ +...+++++.++|||||.+++.+.
T Consensus 124 ~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 124 IYNI--------GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp GGGT--------CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred ceec--------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9987 368899999999999999998875
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=137.83 Aligned_cols=104 Identities=25% Similarity=0.392 Sum_probs=94.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ..+++++++|+.+++ +++++||+|++..+++|+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLP-FENEQFEAIMAINSLEWT 129 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCS-SCTTCEEEEEEESCTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCC-CCCCCccEEEEcChHhhc
Confidence 346899999999999999999866 89999999999999998852 368999999999998 889999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++..+..
T Consensus 130 -------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 130 -------EEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred -------cCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 888999999999999999999887543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=136.63 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=93.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||+|||+|.++..+++.+. +++++|+|+.+++.++++....++++++++|+.+++ ++++||+|++..+++|
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS--TAELFDLIVVAEVLYY 126 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC--CSCCEEEEEEESCGGG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC--CCCCccEEEEccHHHh
Confidence 3456899999999999999998865 899999999999999999877678999999999986 5789999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .......++++++.++|||||.+++.+..
T Consensus 127 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 L----EDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp S----SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred C----CCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 8 11244578899999999999999887644
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-19 Score=135.91 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=93.5
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.... ++++++++|+.+++ +++++||+|++..+++|+
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~ 124 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVFFW 124 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGGGC
T ss_pred EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHhhc
Confidence 89999999999999999874458999999999999999987432 57999999999998 889999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.+...++++++++|||||.+++.+...+
T Consensus 125 -------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 125 -------EDVATAFREIYRILKSGGKTYIGGGFGN 152 (219)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred -------cCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence 8899999999999999999988865443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-19 Score=138.64 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=92.9
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
.....+|||+|||+|.++..+++.+. +++++|+|+.+++.++++... .+++.+.++|+.+++ +++++||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCch
Confidence 34556899999999999999998864 899999999999999998732 368999999999988 889999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
||+ .+...+++++.++|||||.+++.
T Consensus 115 ~~~-------~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLV-------PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGC-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhc-------CCHHHHHHHHHHHCCCCcEEEEE
Confidence 999 78899999999999999999877
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=132.93 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=90.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-------CCcEEEEcccCCCCCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
...+|||+|||+|.++..+++.+ ..+++++|+|+.+++.++++.... +++++.++|+...+ .++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD-KRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC-GGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc-ccCCCcCEEe
Confidence 34689999999999999999874 358999999999999999987533 27999999998776 6778999999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+++|+ +.++..++++++.++|||||.+++..
T Consensus 108 ~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 108 VIEVIEHL-----DLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred eHHHHHcC-----CHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 99999999 44567999999999999999776554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=139.21 Aligned_cols=104 Identities=19% Similarity=0.123 Sum_probs=91.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++....+++++|+|+.+++.++++.... +++.++++|+.+++ + +++||+|++..+
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-A-NEKCDVAACVGA 112 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-C-SSCEEEEEEESC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-c-CCCCCEEEECCC
Confidence 345689999999999999998874348999999999999999887432 47999999999988 6 889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ .+..+++++++++|||||.+++.+.
T Consensus 113 ~~~~-------~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 113 TWIA-------GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp GGGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHhc-------CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 9998 7889999999999999999988763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-19 Score=134.23 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=92.8
Q ss_pred CCCCEEEeCCCCchhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++. .+.+.+. +++++|+|+.+++.++++... ..++++.++|+.+++ +++++||+|++..+++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGTIF 100 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcChHH
Confidence 34689999999999854 4444454 899999999999999988642 257899999999988 8889999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
|+ +..+..+++++++++|||||.+++.+++.+.
T Consensus 101 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 101 HM-----RKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 98 5678999999999999999999998876544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.6e-19 Score=139.60 Aligned_cols=106 Identities=20% Similarity=0.297 Sum_probs=94.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++....+|+++|+|+.+++.++++... . +++.++++|+.+++ +++++||+|++..+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-FEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-CCCCCccEEEEech
Confidence 34568999999999999999886445999999999999999988743 2 47999999999998 88999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ .+...+++++.++|||||.+++.++.
T Consensus 139 l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 139 LHHM-------PDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTTS-------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhC-------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 9999 77899999999999999999988754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-19 Score=140.79 Aligned_cols=104 Identities=17% Similarity=0.296 Sum_probs=93.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++.... ++++++++|+.+++.+.+++||+|++..+++
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~ 147 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVLE 147 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCGG
T ss_pred CCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchhh
Confidence 46899999999999999999865 8999999999999999987543 5799999999987646788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...+++++.++|||||.+++..+.
T Consensus 148 ~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 148 WV-------ADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GC-------SCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cc-------cCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99 78899999999999999999988754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=135.38 Aligned_cols=103 Identities=16% Similarity=0.244 Sum_probs=93.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.++++... .++++.++|+.+++ +++++||+|++..+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLH-LPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCC-CCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhcc-CCCCCceEEEEecccccc
Confidence 4568999999999999999988665899999999999999988754 47999999999988 888999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+...+++++.++|||||.+++...
T Consensus 121 -------~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 121 -------EDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------chHHHHHHHHHHhcCcCcEEEEEeC
Confidence 7889999999999999999988764
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=125.82 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=89.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+++.+++.++++. +++++..+| .+ +++++||+|++..+++|+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~v~~~~~d---~~-~~~~~~D~v~~~~~l~~~ 88 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKF---DSVITLSDP---KE-IPDNSVDFILFANSFHDM 88 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHC---TTSEEESSG---GG-SCTTCEEEEEEESCSTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhC---CCcEEEeCC---CC-CCCCceEEEEEccchhcc
Confidence 446899999999999999998875 9999999999999999983 789999999 56 778999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++.++..
T Consensus 89 -------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 89 -------DDKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred -------cCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 788999999999999999999987654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=133.15 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-------CCcEEEEcccCCCCCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
...+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.++++.... ++++++++|+...+ +++++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~ 107 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD-KRFSGYDAAT 107 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC-GGGTTCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc-cccCCCCEEE
Confidence 34689999999999999999874 358999999999999999987432 27999999998777 7788999999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+++|+ +.++..++++++.++|||||.+++..
T Consensus 108 ~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 108 VIEVIEHL-----DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EHHHHHhC-----CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 99999999 44566899999999999999765543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=137.03 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=91.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.... ++++++++|+.+++ +++++||+|++..+
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-FQNEELDLIWSEGA 123 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-SCTTCEEEEEEESC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-CCCCCEEEEEecCh
Confidence 344689999999999999999985559999999999999999987432 35999999999998 88999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ +...+++++.++|||||++++.+.
T Consensus 124 l~~~--------~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 124 IYNI--------GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SCCC--------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred Hhhc--------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9987 367899999999999999999874
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=129.69 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=92.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.. ..+++++.++|+.+++ + +++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT-F-DRQYDFILSTVVLM 108 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC-C-CCCEEEEEEESCGG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC-C-CCCceEEEEcchhh
Confidence 446899999999999999999865 89999999999999998863 3357999999999988 6 88999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ +..+...+++++.++|||||.+++++..
T Consensus 109 ~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 109 FL-----EAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp GS-----CGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 98 4458899999999999999998887643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=131.75 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=93.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.+++ ...++++++++|+.++ +++++||+|++..+++|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC--CCSSCEEEEEEESCGGGS
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC--CCCCceeEEEEechhhcC
Confidence 345899999999999999998865 89999999999999988 3336899999999886 578899999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
+.+....+++++.++|||||.+++.+...+..
T Consensus 121 -----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 152 (218)
T 3ou2_A 121 -----PDDRFEAFWESVRSAVAPGGVVEFVDVTDHER 152 (218)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-
T ss_pred -----CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCcc
Confidence 44446999999999999999999998876543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=139.81 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=90.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++. +++++++|+.+++ +++++||+|++..+++|
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 106 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA-LPDKSVDGVISILAIHH 106 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC-SCTTCBSEEEEESCGGG
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC-CCCCCEeEEEEcchHhh
Confidence 3456899999999999999998654 9999999999998876553 8999999999998 88999999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ .+...++++++++|| ||++++.++..
T Consensus 107 ~-------~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 107 F-------SHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp C-------SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred c-------cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 9 889999999999999 99888888753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=136.03 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.... .++.++++|+.+++ +++++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcchhh
Confidence 35689999999999999988876668999999999999999987542 46899999999988 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ +.+....+++++.++|||||.+++.+..
T Consensus 158 ~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 158 HL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 98 3344679999999999999999987754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=124.60 Aligned_cols=104 Identities=16% Similarity=0.256 Sum_probs=91.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC-Cccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK-GTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~-~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +++++|+++.+++.++++. +++.+.++|+.+.+ +++++||+|++. .+++|
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSC-CCCCCEEEEEECCCCGGG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCC-CCCCceeEEEECCcHHhh
Confidence 346899999999999999999865 8999999999999999887 56899999999988 788899999998 67887
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ +.++...+++++.++|||||.+++.....
T Consensus 121 ~-----~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 121 L-----AEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp S-----CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred c-----ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 7 55678999999999999999998876543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-19 Score=140.73 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=93.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +. +++++|+|+.+++.++++... . ++++++++|+.+++ +++++||+|++..
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 158 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQD 158 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-CCCCCEeEEEecc
Confidence 44568999999999999999987 55 899999999999999988632 2 57999999999998 8899999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++|+ .+...+++++.++|||||.+++.+..
T Consensus 159 ~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 159 AFLHS-------PDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp CGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99999 77899999999999999999998754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=132.64 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=91.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+ +..+++++|+|+.+++.++++. +++.++++|+.+++ +++++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALP-FPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCC-SCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCC-CCCCcEEEEEEcChhhhc
Confidence 4568999999999999877 4448999999999999999987 67899999999998 888999999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.+..++++++.++|||||.+++.+....
T Consensus 109 -------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 109 -------EDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred -------CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 7889999999999999999999887643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=135.36 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=89.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC--CCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM--SFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~--~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++ ++++++|+.+. + +++++||+|++..+++
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~-~~~~~fD~i~~~~~l~ 112 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKS-LPDKYLDGVMISHFVE 112 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT------SEEECSCHHHHHHT-SCTTCBSEEEEESCGG
T ss_pred CCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------cceeeccHHHHhhh-cCCCCeeEEEECCchh
Confidence 446899999999999999998866 899999999999999865 78899998885 6 7889999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|+ +.++...+++++.++|||||.+++.....
T Consensus 113 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 113 HL-----DPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp GS-----CGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred hC-----CcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99 44577999999999999999998877553
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=132.34 Aligned_cols=108 Identities=27% Similarity=0.429 Sum_probs=93.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------CCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .++.+.++|+..++ +++++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-FHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-SCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-CCCCceeEEEE
Confidence 446899999999999999999866 8999999999999999987543 25799999999988 88999999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
..+++|+ ........+++++.++|||||.+++.++..
T Consensus 108 ~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 108 QAFLTSV----PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp ESCGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cchhhcC----CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 9999998 112334499999999999999999988764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=136.93 Aligned_cols=101 Identities=19% Similarity=0.347 Sum_probs=90.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.++++. +++.+.++|+.+++ + +++||+|++..+++|+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~fD~v~~~~~l~~~ 130 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY---PHLHFDVADARNFR-V-DKPLDAVFSNAMLHWV 130 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCC-C-SSCEEEEEEESCGGGC
T ss_pred CCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCC-c-CCCcCEEEEcchhhhC
Confidence 44689999999999999999854 48999999999999999886 67899999999988 6 6799999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...++++++++|||||++++.....
T Consensus 131 -------~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 131 -------KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred -------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 788999999999999999998877653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=135.16 Aligned_cols=104 Identities=19% Similarity=0.193 Sum_probs=91.7
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.... .+++++++|+.+++ ++++||+|++..+++|
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--PTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--CSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--CCCCeeEEEEChhhhc
Confidence 5899999999999999987655 8999999999999999998653 46999999999876 4569999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ +..+...+++++.++|||||.+++..+..
T Consensus 145 ~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 145 I-----EPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp S-----CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred C-----CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 8 44589999999999999999999887653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-19 Score=138.79 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC------------------------------
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP------------------------------ 54 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------------------------ 54 (210)
.....+|||||||+|.++..++..+..+|+|+|+|+.|++.|+++.+..+
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 34456899999999988877777776689999999999999998753321
Q ss_pred -CcE-EEEcccCCC-CCC---CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 55 -QLK-YLQMDVRDM-SFF---EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 55 -~v~-~~~~d~~~~-~~~---~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++. ++++|+.+. + + ..++||+|+++.++||+.. ..++..+++++++++|||||.|++....
T Consensus 133 ~~i~~~~~~D~~~~~~-~~~~~~~~fD~V~~~~~l~~i~~---~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNP-LAPAVLPLADCVLTLLAMECACC---SLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHEEEEEECCTTSSST-TTTCCCCCEEEEEEESCHHHHCS---SHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhhheEEeccccCCCC-CCccccCCCCEeeehHHHHHhcC---CHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 133 889999884 3 3 3579999999999998511 2467889999999999999999988643
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=139.33 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=92.0
Q ss_pred CCCCEEEeCCCCchhHHHHHH--cCCCcEEEEeCCHHHHHHHHHhhcC----CCCcEEEEcccCCCCCCCC------Ccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK--DGYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFFED------ESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~----~~~v~~~~~d~~~~~~~~~------~~f 74 (210)
...+|||+|||+|.++..+++ .+..+|+|+|+|+.+++.|+++... .++++++++|+.+++ +++ ++|
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~f 114 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK-FLGADSVDKQKI 114 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-GGCTTTTTSSCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-ccccccccCCCe
Confidence 457899999999999999996 3566999999999999999998643 378999999999988 666 899
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|+|++..++||+ +...+++++.++|||||.+++.++..
T Consensus 115 D~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 115 DMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp EEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred eEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999999986 57899999999999999999866553
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=135.07 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECC-ccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG-TLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~-~l~~~ 86 (210)
..+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++. +++.++++|+.+++ + +++||+|++.. +++|+
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRN---PDAVLHHGDMRDFS-L-GRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTCC-C-SCCEEEEEECTTGGGGS
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC---CCCEEEECChHHCC-c-cCCcCEEEEcCchhhhc
Confidence 46899999999999999998865 8999999999999999987 47999999999988 6 78999999998 99998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+..+...+++++.++|||||.+++..+..+.
T Consensus 125 ----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 125 ----AGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp ----CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred ----CCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 12247789999999999999999887654443
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=136.84 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=93.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++.... .++++.++|+.+++ + +++||+|++..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~~ 98 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-L-NDKYDIAICHAF 98 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-C-SSCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-c-CCCeeEEEECCh
Confidence 45578999999999999999886 3 358999999999999999988654 48999999999988 6 469999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ .+...++++++++|||||++++.+..
T Consensus 99 l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 99 LLHM-------TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGGC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcC-------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 9999 88899999999999999999988754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=138.29 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=92.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++.... ++++++++|+.+++ +++++||+|++..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWNNE 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEECC
Confidence 34568999999999999999987 54 8999999999999999987432 47999999999998 8899999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++|+ . ...+++++.++|||||++++.+..
T Consensus 194 ~l~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 194 STMYV-------D-LHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp CGGGS-------C-HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhC-------C-HHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99998 3 899999999999999999988743
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=140.63 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=84.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CcEEEEccc------CCCC-CCCCC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDV------RDMS-FFEDE 72 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~v~~~~~d~------~~~~-~~~~~ 72 (210)
..+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++..... +++|.+.|+ .+++ .++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 46899999999987777777665589999999999999999874321 256888887 3221 15678
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+||+|+|..++|++... .+...++++++++|||||++++.+..
T Consensus 129 ~FD~V~~~~~lhy~~~~----~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHP----RHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp CEEEEEEESCGGGTCST----TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CeeEEEECchHHHhCCH----HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999999999875211 24579999999999999999887754
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-19 Score=136.22 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=89.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCC--CCCCCCcccEEEE-CCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDM--SFFEDESFDAVID-KGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~--~~~~~~~fD~Vi~-~~~ 82 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.|++.|+++.... .++.++++|+.++ + +++++||+|++ .+.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc-cCCCceEEEEECCcc
Confidence 34689999999999999998766568999999999999999987543 6799999999987 7 88999999999 554
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ +... ........++++++|+|||||++++.++.
T Consensus 139 ~-~~~~--~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 L-SEET--WHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp C-BGGG--TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred c-chhh--hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3 2100 12356678899999999999999887654
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=132.47 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=91.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
....+|||+|||+|.++..+++. +..+++++|+|+.|++.++++. +++.+.++|+.+++ ++++||+|++..+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK--PAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC--CSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC--ccCCcCEEEEeCchh
Confidence 34568999999999999999887 3458999999999999999884 68999999999876 578999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...++++++++|||||.+++....
T Consensus 107 ~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 107 WV-------PDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp GS-------TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred hC-------CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99 88999999999999999999887753
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=143.83 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=92.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC----------CCCcEEEEcccCCC------CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE----------IPQLKYLQMDVRDM------SF 68 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----------~~~v~~~~~d~~~~------~~ 68 (210)
...+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.+. .++++|+++|+.++ +
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~- 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG- 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC-
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC-
Confidence 4568999999999999999886 345899999999999999988631 16899999999987 7
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++++||+|+++.+++|+ .+...++++++++|||||++++.++.
T Consensus 162 ~~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLS-------TNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcC-------CCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 889999999999999999 78899999999999999999987643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-18 Score=135.68 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=93.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCC-CCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFF-EDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~-~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++.... .++.+.++|+.+.+ + ++++||+|++..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-cCCCCCcCEEEECch
Confidence 34689999999999999988877668999999999999999988543 46899999999987 7 6889999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+||.. .+..+...+++++.++|||||.+++....
T Consensus 143 l~~~~---~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 143 FHYAF---STSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 98721 13378999999999999999999887754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=129.21 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=90.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. ++.+..+|+.+++ .+++||+|++..+++|+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~ 115 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL----GRPVRTMLFHQLD--AIDAYDAVWAHACLLHV 115 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC--CCSCEEEEEECSCGGGS
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc----CCceEEeeeccCC--CCCcEEEEEecCchhhc
Confidence 346899999999999999999866 8999999999999999986 5778899999887 67899999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+..+...+++++.++|||||.+++....
T Consensus 116 -----~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 143 (211)
T 3e23_A 116 -----PRDELADVLKLIWRALKPGGLFYASYKS 143 (211)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----CHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence 4558999999999999999999887643
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=135.90 Aligned_cols=105 Identities=26% Similarity=0.372 Sum_probs=93.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++..+++.. ..+++++|+|+.+++.++++... .+++.+.++|+.+++ +++++||+|++..+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHIFVCFV 114 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-SCTTCEEEEEEESC
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-CCCCCeeEEEEech
Confidence 345689999999999999999873 45899999999999999998743 368999999999988 88999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|+ .+...+++++.++|||||.+++.+.
T Consensus 115 l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 115 LEHL-------QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhc-------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999 7888999999999999999998763
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=130.26 Aligned_cols=104 Identities=25% Similarity=0.313 Sum_probs=92.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCc--cc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGT--LD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~--l~ 84 (210)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... ++++++++|+.+++ +++++||+|+++.+ ++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~~~ 116 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDSIVHF 116 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTCEEEEEEESCGGGC
T ss_pred CCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-CCCCcEEEEEEcCchHhC
Confidence 56899999999999999998866 8999999999999999887432 68999999999988 78889999999999 55
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+. .+..++++++.++|||||.+++.+...
T Consensus 117 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 117 EP-------LELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp CH-------HHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CH-------HHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 55 788999999999999999998887653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=135.16 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=92.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .++++.++|+.+.+ + +++||+|++..+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-I-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-C-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-c-cCCccEEEEccchhh
Confidence 456899999999999999999876 8999999999999999987433 38999999999987 5 889999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+ +.+....+++++.++|||||.++++..
T Consensus 197 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 L-----NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp S-----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8 557788999999999999999877654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=132.87 Aligned_cols=109 Identities=11% Similarity=0.039 Sum_probs=93.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC-----CcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-----ESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-----~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++... .+++++++|+.+.+ +.. ..||+|++.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPE-QAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-TTEEEEECCTTCHH-HHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-cCceEEECcccccc-cccccccccCccEEEEc
Confidence 3456899999999999999999876 899999999999999998843 58999999998865 221 249999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.++||+ +..+...+++++.++|||||.+++.++..+.
T Consensus 132 ~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 132 TGFHHI-----PVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp SSSTTS-----CGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred chhhcC-----CHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 999999 4458999999999999999999999887654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-18 Score=135.27 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=91.7
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCcccEEEEC-Cc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFDAVIDK-GT 82 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~Vi~~-~~ 82 (210)
.+|||||||+|.++..+++.+. +|+++|+|+.+++.|+++.... .+++++++|+.+++ + +++||+|++. .+
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~~~ 160 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-L-DKRFGTVVISSGS 160 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-C-SCCEEEEEECHHH
T ss_pred CcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-c-CCCcCEEEECCcc
Confidence 4899999999999999999865 8999999999999999988654 57999999999988 6 7899988865 56
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++++ +..+...+++++.++|||||.+++..+..+.
T Consensus 161 ~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 161 INEL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp HTTS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred cccC-----CHHHHHHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 6666 4567899999999999999999888776544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-18 Score=134.92 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC-CCCCCcccEEEE-----C
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS-FFEDESFDAVID-----K 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~-~~~~~~fD~Vi~-----~ 80 (210)
.++|||||||+|..+..+++....+++++|+|+.+++.|+++.+.. .++.++.+|+.+.. .+++++||.|+. .
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~ 140 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 140 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred CCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecc
Confidence 4689999999999999998875558999999999999999988544 57889999987642 378899999975 3
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++|+ .+...++++++|+|||||+|++..
T Consensus 141 ~~~~~~-------~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 141 EETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cchhhh-------cchhhhhhhhhheeCCCCEEEEEe
Confidence 444555 889999999999999999998754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=134.11 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=87.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--------------------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-------------------------------- 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-------------------------------- 53 (210)
...+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 3568999999999999999987 4559999999999999999886421
Q ss_pred ----------------------------CCcEEEEcccCCCC----CCCCCcccEEEECCccchhccCCCchHHHHHHHH
Q 028385 54 ----------------------------PQLKYLQMDVRDMS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 101 (210)
Q Consensus 54 ----------------------------~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~ 101 (210)
.+++|.++|+...+ .+.+++||+|++..+++|+-. ..+..+..++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl-~~~~~~~~~~l~ 204 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL-NWGDEGLKRMFR 204 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH-HHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhh-cCCHHHHHHHHH
Confidence 37999999997643 246789999999999977600 001128899999
Q ss_pred HHHHhccCCcEEEEEE
Q 028385 102 EVSRLLKPGGIYMLIT 117 (210)
Q Consensus 102 ~i~r~LkpgG~~~~~~ 117 (210)
+++++|||||++++..
T Consensus 205 ~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHEEEEEEEEEEC
T ss_pred HHHHHhCCCcEEEEec
Confidence 9999999999997753
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=124.59 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=85.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECC-cc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKG-TL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~-~l 83 (210)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++.+ ..+++++++.|..+++.+.+++||+|+++. .+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 34689999999999999999884 489999999999999999874 336899999888875434578999998862 22
Q ss_pred chhc-cCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLM-CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~-~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++-. .-.........+++++.++|||||.+++..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2100 00002256778899999999999999998775
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-18 Score=133.70 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=90.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCC------------------------------
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQ------------------------------ 55 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------------------------ 55 (210)
....+|||+|||+|.++..+++.+..+|+++|+|+.|++.++++....+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 34468999999999999988877656899999999999999988765331
Q ss_pred -c-EEEEcccCCCCCCCC---CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 56 -L-KYLQMDVRDMSFFED---ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 56 -v-~~~~~d~~~~~~~~~---~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ .+.++|+.+...+++ ++||+|++..+++++. ....+...+++++.++|||||.+++....
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC---PDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 7 899999988642355 8999999999999431 01278999999999999999999888743
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=126.24 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=88.7
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .++.+.++|+.+.+ +++++||+|++... |+
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~--~~-- 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSIFC--HL-- 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEECC--CC--
T ss_pred CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEEhh--cC--
Confidence 899999999999999998866 8999999999999999887432 37899999999988 88899999998543 33
Q ss_pred CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 89 GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 89 ~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+..+...+++++.++|||||.+++.++..
T Consensus 106 ---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 106 ---PSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp ---CHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred ---CHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 34789999999999999999999988764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=130.98 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=90.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++.... +++++..+|+.+++ ++||+|++..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~fD~v~~~~~ 138 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSIGA 138 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEESC
T ss_pred CcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----CCeeEEEEeCc
Confidence 4468999999999999999854 55 9999999999999999987532 57999999997643 78999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++|+ +..+...+++++.++|||||.+++.+...
T Consensus 139 l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 139 FEHF-----GHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp GGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred hhhc-----ChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 9998 44678999999999999999999987654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=133.09 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=92.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||+|.++..+++. + .+|+|+|+|+.+++.|+++.... .++++.++|+.++ +++||+|++..
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v~~~~ 145 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRIVSLG 145 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEEEEES
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEEEEcc
Confidence 34468999999999999999988 7 58999999999999999987432 3799999999764 68999999999
Q ss_pred ccchhccCC--CchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLMCGT--NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~~~~--~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++|+.... .+..+...+++++.++|||||.+++.++..+.
T Consensus 146 ~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 146 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 999982110 02356689999999999999999998876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-18 Score=134.90 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=82.5
Q ss_pred CCCCEEEeCCCCchhHHHHH----Hc-CCCc--EEEEeCCHHHHHHHHHhhcC---CCCcE--EEEcccCCCC-----CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMV----KD-GYED--IVNIDISSVAIDMMKMKYEE---IPQLK--YLQMDVRDMS-----FF 69 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~----~~-~~~~--v~~vD~s~~~~~~a~~~~~~---~~~v~--~~~~d~~~~~-----~~ 69 (210)
...+|||||||+|.++..++ .. +... ++++|+|+.|++.|+++... .+++. +..+++.+++ .+
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 44689999999998765433 22 3333 39999999999999998743 24554 4455555432 14
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++++||+|++..++||+ +++.+++++++|+|||||++++.....
T Consensus 132 ~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp CCCCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred CCCceeEEEEeeeeeec-------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 67899999999999999 899999999999999999999876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=128.48 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=90.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECC-ccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG-TLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~-~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.++++.... .++.+.++|+.+++ ++ ++||+|++.. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-IN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CS-CCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-cc-CCceEEEEcCcccc
Confidence 446899999999999999998865 8999999999999999987433 37999999999988 66 8999999998 999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+ .+..+...+++++.++|||||.+++...
T Consensus 114 ~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 114 YI----IDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GC----CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc----CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 87 2236789999999999999999987443
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-18 Score=135.27 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=90.9
Q ss_pred CCCCEEEeCCCCchhHHHHH--HcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMV--KDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~--~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..++ ..+..+|+++|+|+.+++.|+++.... .+++++++|+.+++ ++ ++||+|+++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-cc-CCeEEEEECC
Confidence 34689999999999999884 345568999999999999999998643 35999999999998 77 9999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+++|+ ........+++++.++|||||++++.++..+
T Consensus 196 ~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 196 LNIYE----PDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp SGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred hhhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 99987 1123344589999999999999999876643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=127.56 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----CCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ++..++.+.+. ..+++||+|++..
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~~~~fD~Vv~~~ 118 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKELAGHFDFVLNDR 118 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGGTTCCSEEEEES
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccccCCCccEEEEhh
Confidence 3456899999999999999999876 8999999999999999988543 23444444430 1257899999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++|+ ..++...+++++.++| |||++++..
T Consensus 119 ~l~~~-----~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 119 LINRF-----TTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred hhHhC-----CHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 99998 5678889999999999 999998754
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-18 Score=134.94 Aligned_cols=112 Identities=16% Similarity=0.224 Sum_probs=90.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCC--CCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMS--FFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~--~~~~~~fD~Vi 78 (210)
...+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++... ..++.+..+|+.+++ .+++++||+|+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~ 135 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence 346899999999999999999876 999999999999999887511 146889999987753 13678999999
Q ss_pred EC-CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~-~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+. .+++|+........+..+++++++++|||||++++...+
T Consensus 136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98 899998221112245999999999999999999877643
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=122.15 Aligned_cols=107 Identities=8% Similarity=0.060 Sum_probs=89.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.+. .++++++++|+.+.. .+++++||+|+++..+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY 123 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence 3468999999999999988888777899999999999999998743 358999999998853 1447899999998887
Q ss_pred chhccCCCchHHHHHHHHHHHH--hccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~~~~ 119 (210)
++. ..+..++++++.+ +|||||.+++....
T Consensus 124 ~~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 124 NVD------SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TSC------HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred Ccc------hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 652 2678899999999 99999999886643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=133.51 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=82.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------------------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-------------------------------- 54 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------------------------- 54 (210)
...+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 446899999999996554444344589999999999999988653210
Q ss_pred CcEEEEcccCC-CC----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 55 QLKYLQMDVRD-MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 55 ~v~~~~~d~~~-~~----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+.++.+|+.+ ++ .+++++||+|+++.+++|+. ....+..+++++++++|||||++++..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhc---CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 14577779887 54 13456799999999999930 011789999999999999999998874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=130.52 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=92.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +. +|+++|+|+.+++.++++.... +++++.++|+.+++ ++||+|++..+
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~fD~v~~~~~ 164 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----EPVDRIVSIEA 164 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----CCCSEEEEESC
T ss_pred CcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----CCcCEEEEeCh
Confidence 4468999999999999999987 65 8999999999999999987543 46999999997654 68999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++|+ +..+...+++++.++|||||.+++.+...+.
T Consensus 165 l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 165 FEHF-----GHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp GGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred HHhc-----CHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 9998 5568899999999999999999998876443
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.1e-17 Score=126.01 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=89.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEE-CCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID-KGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~-~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. +++.+.++|+.+++ + +++||+|++ ..+++|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL---PDATLHQGDMRDFR-L-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC---TTCEEEECCTTTCC-C-SSCEEEEEECTTGGGG
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC---CCCEEEECCHHHcc-c-CCCCcEEEEcCchHhh
Confidence 346899999999999999998865 8999999999999999886 57899999999987 6 779999996 458888
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+ ....+...+++++.++|||||.+++..+..+
T Consensus 114 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 114 L----KTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp C----CSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred c----CCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 7 1236788999999999999999988765543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-17 Score=127.81 Aligned_cols=102 Identities=18% Similarity=0.270 Sum_probs=87.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.|++.++++... .+.++|+.+++ +++++||+|++..++.|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~----~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----NVVEAKAEDLP-FPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----CEEECCTTSCC-SCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC----CEEECcHHHCC-CCCCCEEEEEEcchhhhc
Confidence 456899999999999999998865 899999999999999988752 28999999988 888999999998876664
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
. .+...+++++.++|||||.+++...+.
T Consensus 128 -----~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 128 -----V-ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp -----C-SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred -----c-ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 1 348899999999999999998877553
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=123.47 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=87.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-CCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+..+|+++|+++.+++.|+++.... .+++++++|+.+.+ .+++++||+|+++..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 45689999999999999999886558999999999999999987532 46999999999865 245789999999876
Q ss_pred cchh-ccCCC------------chHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSL-MCGTN------------APISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~-~~~~~------------~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+... ..+.. ...+...+++++.++|||||+++++..
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 177 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR 177 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc
Confidence 6432 11111 124567899999999999999988653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=126.95 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=90.5
Q ss_pred CCCCEEEeCCCC---chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----------CCCCC
Q 028385 7 GTRDTCRRAAPS---IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----------FFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~---G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----------~~~~~ 72 (210)
+..+|||||||+ |.++..+.+. +..+|+++|+|+.|++.|+++....++++++++|+.+.+ .++.+
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 446899999999 9888766654 445899999999999999999865578999999997631 13335
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+||+|++..++||+ +..+...++++++++|||||++++.++..
T Consensus 157 ~~d~v~~~~vlh~~-----~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYL-----SPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGS-----CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhC-----CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 89999999999999 33348999999999999999999988765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.5e-17 Score=129.85 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------CCCcEEEEcccCCCC---CC--CCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------IPQLKYLQMDVRDMS---FF--EDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------~~~v~~~~~d~~~~~---~~--~~~ 72 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.|++.++++... ..+++++++|+.+.+ .+ +++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 3468999999999999999987666899999999999999988642 247899999999864 13 345
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+||+|++..++||+. .+..+...+++++.++|||||.+++.+.+.
T Consensus 114 ~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 114 CFDICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp CEEEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CEEEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 999999999998751 123667899999999999999998887654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=125.10 Aligned_cols=103 Identities=23% Similarity=0.398 Sum_probs=86.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECC-ccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG-TLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~-~l~ 84 (210)
...+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.... .++.++++|+.+++ ++ ++||+|++.. .++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CC-SCEEEEEECSSGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-cC-CCccEEEEcCCchh
Confidence 346899999999999999999876 8999999999999999887432 47999999999987 54 6899999874 344
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++ +..+..++++++.++|||||.+++..
T Consensus 118 ~~-----~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 118 YF-----DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 44 44688999999999999999997643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-17 Score=123.74 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=86.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||+|||+|.++..+++. +++|+|+.+++.++++ ++.+.++|+.+++ +++++||+|++..+++|+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 115 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDFALMVTTICFV- 115 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEEEEEESCGGGS-
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----CCEEEEcccccCC-CCCCCeeEEEEcchHhhc-
Confidence 568999999999999888654 9999999999999886 5899999999988 888899999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++.....
T Consensus 116 ------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 116 ------DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp ------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 788999999999999999999887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=125.62 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+. +++++|+|+.+++.++++ .++.+..+|+.++ +...+++||+|++..+++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh----cccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 47899999999999999998866 899999999999999987 5678888888876 412345599999999998
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
. .+...++++++++|||||++++.+...
T Consensus 128 -~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 128 -H-------QDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp -S-------SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred -h-------hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 5 678899999999999999999988654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=122.40 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=78.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.+..+...++.++.+|+... + +. ++||+|++..
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~-~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSG-IV-EKVDLIYQDI 134 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTT-TC-CCEEEEEECC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcc-cc-cceeEEEEec
Confidence 4468999999999999999876 33489999999998876665554446789999998874 3 44 7999999872
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++ .....++++++++|||||++++..
T Consensus 135 -~~~--------~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 135 -AQK--------NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -CST--------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -cCh--------hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 111 345567999999999999998874
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=123.61 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=87.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECC-ccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG-TLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~-~l~~ 85 (210)
..+|||+|||+|.++..+++. .+++++|+|+.+++.|+++.... .++++.++|+.+++ ++ ++||+|++.. +++|
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~~~~~ 109 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LP-EPVDAITILCDSLNY 109 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CS-SCEEEEEECTTGGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CC-CCcCEEEEeCCchhh
Confidence 368999999999999999887 58999999999999999887432 57999999999887 65 7899999986 8887
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ .+..+...+++++.++|||||.+++..
T Consensus 110 ~----~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 110 L----QTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp C----CSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 6 234678899999999999999997644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-17 Score=123.44 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=87.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC--CCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++. .++.++|+.+ .+ +++++||+|++..+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~-~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMP-YEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCC-SCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCC-CCCCccCEEEECChhh
Confidence 45689999999999999999886 59999999999999998765 3788999987 45 7788999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ .+...+++++.++|||||.+++....
T Consensus 105 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 105 HL-------FDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp GS-------SCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred hc-------CCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99 77889999999999999999887644
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=129.15 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=91.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC--CCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM--SFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~--~~~~~~~fD~Vi~~ 80 (210)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.|+++.... ++++++.+|+.+. | ++ ++||+|++.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~p-~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-FP-TGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-CC-CCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-CC-CCcCEEEEe
Confidence 4568999999999999999885 4458999999 99999999987543 4799999999885 4 55 789999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.++|++ +.++..+++++++++|||||++++.+...
T Consensus 256 ~vlh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (363)
T 3dp7_A 256 QFLDCF-----SEEEVISILTRVAQSIGKDSKVYIMETLW 290 (363)
T ss_dssp SCSTTS-----CHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred chhhhC-----CHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence 999988 55677899999999999999999988653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=117.64 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=89.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCC--cEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQ--LKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~--v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. ..+++++|+++.+++.++++... ..+ +++.++|+.+. +++++||+|+++.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~ 128 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDRKYNKIITNPP 128 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTSCEEEEEECCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc--cccCCceEEEECCC
Confidence 4568999999999999999888 44899999999999999998742 344 99999999874 45789999999988
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+++. ......+++++.++|||||.+++.....
T Consensus 129 ~~~~------~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 129 IRAG------KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp STTC------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred cccc------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 8761 2778899999999999999999888764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=115.85 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=85.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+ ..+++++|+|+.+++.|+++.. ..++++++++|+.+.. ...++||+|++...+
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL-DDLPDPDRVFIGGSG 118 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC-TTSCCCSEEEESCCT
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh-hcCCCCCEEEECCCC
Confidence 44689999999999999999874 4589999999999999998874 3368999999997654 334789999987765
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+ +...+++++.++|||||++++....
T Consensus 119 ~----------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 119 G----------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp T----------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred c----------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 3 4578999999999999999887655
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=131.14 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=92.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.... .+++++++|+.+.. .++++||+|+++.++|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCchhh
Confidence 446899999999999999999865 9999999999999999987533 35899999999987 66689999999999887
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. ..........+++++.++|||||.++++...
T Consensus 311 ~--~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 311 G--GAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp T--CSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred c--ccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 2 0112378899999999999999999887643
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=138.89 Aligned_cols=106 Identities=10% Similarity=0.110 Sum_probs=90.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhc--------CCCCcEEEEcccCCCCCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYE--------EIPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~--------~~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
...+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|+++.. ..++++|+++|+.+++ +.+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp-~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD-SRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC-TTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC-cccCCeeE
Confidence 456899999999999999998862 489999999999999988542 2368999999999998 88899999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|++..+++|+ +......+++++.++|||| .+++.+..
T Consensus 800 VV~~eVLeHL-----~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 800 GTCLEVIEHM-----EEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEEESCGGGS-----CHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEEeCchhhC-----ChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999999 4455667999999999999 66666543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.1e-17 Score=121.34 Aligned_cols=112 Identities=16% Similarity=0.128 Sum_probs=88.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|.++..+++. +..+++++|+++.+++.|+++.... ++++++++|+.+++.+.+++||+|++...
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 102 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG 102 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence 468999999999999999887 4458999999999999999987532 57999999998875355689999998765
Q ss_pred cchhcc--CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC--GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~--~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+..... ......+..++++++.++|||||++++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 103 YLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp BCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 511000 0012346678999999999999999988764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=121.14 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=88.2
Q ss_pred CCCCEEEeCCC-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAP-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+||| +|.++..+++....+|+++|+|+.+++.|+++.... .+++++++|+..+..+++++||+|+++..++
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 45689999999 999999999873348999999999999999987433 3799999998654336678999999987776
Q ss_pred hhcc------------CCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMC------------GTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~------------~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+... +.........+++++.++|||||++++.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 182 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK 182 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 5311 11122345889999999999999998875444
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=125.12 Aligned_cols=103 Identities=15% Similarity=0.254 Sum_probs=84.3
Q ss_pred CCCEEEeCCCCch----hHHHHHHc-C----CCcEEEEeCCHHHHHHHHHhhc------------------------C--
Q 028385 8 TRDTCRRAAPSIV----MSEDMVKD-G----YEDIVNIDISSVAIDMMKMKYE------------------------E-- 52 (210)
Q Consensus 8 ~~~vLdiGcG~G~----~~~~l~~~-~----~~~v~~vD~s~~~~~~a~~~~~------------------------~-- 52 (210)
..+|||+|||||. ++..+++. + ..+|+|+|+|+.|++.|+++.. .
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999998 55555554 3 2389999999999999998641 0
Q ss_pred C-------CCcEEEEcccCCCCCCC-CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 53 I-------PQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 53 ~-------~~v~~~~~d~~~~~~~~-~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. .++.|.++|+.+.+ ++ .++||+|+|.++++|+ +.+...++++++++.|||||++++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~-~~~~~~fDlI~crnvliyf-----~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCC-CCcCCCeeEEEECCchHhC-----CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 0 26899999999866 65 5789999999999998 5567799999999999999999763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-15 Score=117.39 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=84.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
..+|||||||+|.++..+++. +..+++|+|+|+.+++.|+++.. +.+++.++++|+.+++ .+++++||.|++.+..
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 457999999999999999886 45589999999999999998874 3468999999998854 2567899999875443
Q ss_pred chhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+.... ...+-....+++++.++|||||.+++.+-.
T Consensus 119 p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 119 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 221000 000001468899999999999999887633
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-16 Score=121.67 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCC---CCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFE---DESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~---~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..++.. +..+|+++|+|+.|++.++++.. ...+++++++|+.+++ +. +++||+|++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-QRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-TCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc-ccccccCCccEEEEe
Confidence 4468999999999999999863 44589999999999999998764 3357999999998876 53 6799999986
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. + .+...+++++.++|||||.+++..-
T Consensus 149 ~----~-------~~~~~~l~~~~~~LkpgG~l~~~~g 175 (240)
T 1xdz_A 149 A----V-------ARLSVLSELCLPLVKKNGLFVALKA 175 (240)
T ss_dssp C----C-------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred c----c-------CCHHHHHHHHHHhcCCCCEEEEEeC
Confidence 5 2 4578999999999999999987653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=121.02 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCCC-CCCCCc-ccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDMS-FFEDES-FDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~~-~~~~~~-fD~Vi~~~ 81 (210)
..+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++.+ .. ++++++++|+.+.. .+.+++ ||+|++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 45899999999999998888776689999999999999999874 22 47999999998753 124678 99999987
Q ss_pred ccchhccCCCchHHHHHHHHHH--HHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i--~r~LkpgG~~~~~~~~~ 120 (210)
.++ . .....+++.+ .++|||||.+++.....
T Consensus 134 ~~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 134 PFH-F-------NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CSS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 754 3 5677888888 67899999998776543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=126.44 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=88.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CC-CcEEEEeCCHH------HHHHHHHhhcCC---CCcEEEEcc---cCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GY-EDIVNIDISSV------AIDMMKMKYEEI---PQLKYLQMD---VRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~vD~s~~------~~~~a~~~~~~~---~~v~~~~~d---~~~~~~~~~~ 72 (210)
...+|||||||+|.++..+++. +. .+|+++|+|+. +++.++++.... +++++.++| ...++ ++++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~ 121 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IADQ 121 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GTTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CCCC
Confidence 4468999999999999999987 32 58999999997 999999987543 579999998 44455 7789
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+||+|++..+++|+ .+...+++.+.++++|||.+++.++..
T Consensus 122 ~fD~v~~~~~l~~~-------~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 122 HFDRVVLAHSLWYF-------ASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp CCSEEEEESCGGGS-------SCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred CEEEEEEccchhhC-------CCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 99999999999998 666677777888888899999988764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=129.29 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=85.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCc-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGT- 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~- 82 (210)
...+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++.+. . ++++++++|+.+++ +++++||+|++..+
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~ 141 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMG 141 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCB
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcCch
Confidence 3468999999999999999998766899999997 99999988743 2 68999999999988 88889999999763
Q ss_pred --cchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 83 --LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 83 --l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+++. .....++.++.++|||||.++
T Consensus 142 ~~l~~~-------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 142 YFLLFE-------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TTBTTT-------CHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCH-------HHHHHHHHHHHhhcCCCcEEE
Confidence 4443 678889999999999999987
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=121.82 Aligned_cols=100 Identities=8% Similarity=0.080 Sum_probs=82.5
Q ss_pred CCCCCEEEeCCCCchhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~-~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++. .+++....+|+++|+|+.|++.|+++.+ ...+++|+++|+.+++ +++||+|++...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---d~~FDvV~~~a~ 197 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---GLEFDVLMVAAL 197 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG---GCCCSEEEECTT
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC---CCCcCEEEECCC
Confidence 445789999999987764 4555445599999999999999999874 3378999999998764 689999997544
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ++..++++++.|+|||||++++...
T Consensus 198 ---~-------~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---A-------EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---C-------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---c-------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 3 6788999999999999999988764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=123.19 Aligned_cols=107 Identities=16% Similarity=0.082 Sum_probs=84.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC-C-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM-S-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~-~-~~~~~~fD~Vi~~~~ 82 (210)
..+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++.. ...|+.++++|+.++ + .+++++||.|++++.
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~ 114 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP 114 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence 457999999999999999976 44579999999999999998874 346899999999884 2 167899999998744
Q ss_pred cchhccCCCchHHH------HHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISA------SQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~------~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+. ..... ..+++++.++|||||.+++.+-.
T Consensus 115 ~p~~-----~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~ 152 (218)
T 3dxy_A 115 DPWH-----KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW 152 (218)
T ss_dssp CCCC-----SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCcc-----chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3221 00111 25999999999999999887743
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-16 Score=129.75 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=85.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++.+. . ++++++++|+.+++ +++++||+|++..+.+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccccc
Confidence 468999999999999999999777999999995 99999988743 2 45999999999998 8889999999976544
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++. .......++.++.++|||||+++.
T Consensus 145 ~l~----~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 145 CLF----YESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp TBT----BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccc----CchhHHHHHHHHHHhCCCCCEEcc
Confidence 331 226778899999999999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=120.63 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=85.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.. ...++++.++|+.+. .+++||+|+++..++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD---VDGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT---CCSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc---CCCCceEEEECCcHH
Confidence 346899999999999999998877799999999999999999874 334599999999764 358999999987765
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++ ..+++++.++|||||.+++.++.
T Consensus 137 ~~----------~~~l~~~~~~L~~gG~l~~~~~~ 161 (205)
T 3grz_A 137 IL----------LDLIPQLDSHLNEDGQVIFSGID 161 (205)
T ss_dssp HH----------HHHGGGSGGGEEEEEEEEEEEEE
T ss_pred HH----------HHHHHHHHHhcCCCCEEEEEecC
Confidence 54 78899999999999999887654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=121.11 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=82.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC----CCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~----~~~~~~~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+++.++.+|+.+ .+ +. ++||+|+.
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~-~~~D~v~~- 149 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN-IV-EKVDVIYE- 149 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT-TS-CCEEEEEE-
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc-cC-ccEEEEEE-
Confidence 34568999999999999999987 5458999999999999999988666889999999988 66 55 78999993
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++ ........+++++.++|||||.+++.
T Consensus 150 ----~~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 ----DV----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ----CC----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ec----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 22 01134477899999999999999886
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=125.85 Aligned_cols=107 Identities=8% Similarity=0.057 Sum_probs=90.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++. +..+++++|+ +.+++.++++... . ++++|+.+|+. .+ ++. .||+|++.++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DP-LPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SC-CCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CC-CCC-CCcEEEEehh
Confidence 3468999999999999999875 4558999999 9999999988642 2 67999999997 34 555 8999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+|++ +.+...+++++++++|||||++++.+...+.
T Consensus 245 lh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 245 LHDW-----DDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp GGGS-----CHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred hccC-----CHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 9998 4555799999999999999999998876543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-15 Score=117.13 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=85.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---C---CCcEEEEcccCCCC------CCCCC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---I---PQLKYLQMDVRDMS------FFEDE 72 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~---~---~~v~~~~~d~~~~~------~~~~~ 72 (210)
....+|||+|||+|.++..+++.. ..+++++|+++.+++.|+++... . .+++++++|+.+.. .++++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 345689999999999999998873 45899999999999999999865 3 35999999998861 15678
Q ss_pred cccEEEECCccchhccCC------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGT------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+||+|+++..+.... +. ........+++++.++|||||.++++.
T Consensus 115 ~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp CEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999986554321 00 011236788999999999999998765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-16 Score=118.70 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=76.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..++ .+++++|+|+. ++.+.++|+.+++ +++++||+|++..++| .
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-------------~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~-~ 127 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR----NPVHCFDLASL-------------DPRVTVCDMAQVP-LEDESVDVAVFCLSLM-G 127 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-------------STTEEESCTTSCS-CCTTCEEEEEEESCCC-S
T ss_pred CCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-------------CceEEEeccccCC-CCCCCEeEEEEehhcc-c
Confidence 44689999999999988772 48999999986 5788999999988 8889999999999986 3
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+...+++++.++|||||.+++.++..
T Consensus 128 -------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 128 -------TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred -------cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 577899999999999999999987643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-17 Score=138.43 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=85.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||||||+|.++..+++.+. +++|+|+|+.+++.|+++........+...++..++ +++++||+|++.++++|+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~-~~~~~fD~I~~~~vl~h~ 184 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVR-RTEGPANVIYAANTLCHI 184 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHH-HHHCCEEEEEEESCGGGC
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcc-cCCCCEEEEEECChHHhc
Confidence 456899999999999999999876 899999999999999987311111223345555566 678899999999999999
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++..++++++++|||||++++...
T Consensus 185 -------~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 185 -------PYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp -------TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999999999999988654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=116.65 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=85.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-CCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.|+++.... ++++++++|+.+ ++ ..+++||+|++...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID-CLTGRFDLVFLDPP 109 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-HBCSCEEEEEECCS
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH-hhcCCCCEEEECCC
Confidence 44689999999999999999887668999999999999999988544 468999999987 33 33467999999877
Q ss_pred cchhccCCCchHHHHHHHHHHH--HhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~~~~~ 120 (210)
++. ......++.+. ++|||||.+++.....
T Consensus 110 ~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 110 YAK--------ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SHH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCc--------chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 642 45566677776 9999999998876543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-16 Score=120.22 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=84.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++.....++++.++|+.+.. ..+++||+|++..+++|+
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAPTL 147 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBSSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHHHH
Confidence 44689999999999999999887 5899999999999999999865458999999998733 346789999999999988
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
. .++.++|||||++++.....
T Consensus 148 -------~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 148 -------L------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp -------C------HHHHHTEEEEEEEEEEECSS
T ss_pred -------H------HHHHHHcCCCcEEEEEEcCC
Confidence 2 46899999999998876443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=117.67 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=86.4
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEEC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDK 80 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~ 80 (210)
.....+|||+|||+|.++..+++. +..+|+++|+++.|++.++++.++.+|+..+.+|..+.. .+..+++|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 344568999999999999999986 445899999999999999999887789999999987632 2667899999864
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. +. .+...++.++++.|||||++++..
T Consensus 155 ~~--~~-------~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 155 VA--QP-------EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CC--CT-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc--CC-------hhHHHHHHHHHHhccCCCEEEEEE
Confidence 33 33 567889999999999999998764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=116.48 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=85.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..+++. +..+++|+|+|+.+++.|+++.. ..+++.++++|+.+++ .+++++||+|+++...
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~ 121 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 121 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC
Confidence 457999999999999999886 44589999999999999998874 3368999999998864 2567899999987654
Q ss_pred chhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+.... ...+.....+++++.++|||||.+++.+-
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 322000 00000236799999999999999988753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=113.19 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=84.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++. +..+++++|+|+.+++.++++... ..++++.++|+.+.+ +.++||+|++...
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--ccCCcCEEEEecc--
Confidence 468999999999999999886 456899999999999999988743 356999999998865 4678999997542
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+...+++++.++|||||.+++.......
T Consensus 142 ---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 170 (207)
T 1jsx_A 142 ---------ASLNDMVSWCHHLPGEQGRFYALKGQMPE 170 (207)
T ss_dssp ---------SSHHHHHHHHTTSEEEEEEEEEEESSCCH
T ss_pred ---------CCHHHHHHHHHHhcCCCcEEEEEeCCCch
Confidence 34578999999999999999887644433
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=130.16 Aligned_cols=108 Identities=7% Similarity=-0.035 Sum_probs=87.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc---------C--CCCcEEEEcccCCCCCCCC--
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE---------E--IPQLKYLQMDVRDMSFFED-- 71 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~---------~--~~~v~~~~~d~~~~~~~~~-- 71 (210)
....+|||||||+|.++..++.. +..+++|+|+++.+++.|+++.+ . ..+++|+++|+.+++ +.+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp-~~d~~ 250 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE-WRERI 250 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH-HHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc-ccccc
Confidence 34568999999999999999865 55469999999999999987431 1 268999999999987 644
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
..||+|+++..++ . ++....|.+++++|||||++++.+...|.
T Consensus 251 ~~aDVVf~Nn~~F-~-------pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 251 ANTSVIFVNNFAF-G-------PEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp HTCSEEEECCTTC-C-------HHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred CCccEEEEccccc-C-------chHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 4799999987753 3 68888999999999999999887655443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=119.09 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=84.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
....+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++... .+++++..+|+.+.. ..+++||+|++..++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAAP 153 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSBC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccch
Confidence 345689999999999999999885 4899999999999999998753 368999999998866 567899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++ . +++.++|||||++++....
T Consensus 154 ~~~-------~------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 154 PEI-------P------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp SSC-------C------THHHHTEEEEEEEEEEECS
T ss_pred hhh-------h------HHHHHhcccCcEEEEEEcC
Confidence 988 2 2689999999999876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=125.34 Aligned_cols=108 Identities=10% Similarity=0.184 Sum_probs=92.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||+|||+|.++..+++. +..+++++|++ .+++.++++... . .+++++.+|+.+.+ ++++ ||+|++..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~-~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-YGND-YDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCSC-EEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-CCCC-CcEEEEcc
Confidence 45578999999999999999886 34589999999 999999988632 2 46999999998876 6554 99999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++|++ +.++..+++++++++|||||++++.+...+
T Consensus 241 ~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 241 FLHHF-----DVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hhccC-----CHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 99998 566778999999999999999999887644
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=119.88 Aligned_cols=91 Identities=7% Similarity=0.137 Sum_probs=78.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc-CCCCCCC-CCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV-RDMSFFE-DESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~-~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++. ++++++++|+ ..++ ++ +++||+|+++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~-~~~~~~fD~v~~~~--- 119 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANA---PHADVYEWNGKGELP-AGLGAPFGLIVSRR--- 119 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHC---TTSEEEECCSCSSCC-TTCCCCEEEEEEES---
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhC---CCceEEEcchhhccC-CcCCCCEEEEEeCC---
Confidence 346899999999999999999865 8999999999999999984 6899999999 5577 77 88999999862
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+...+++++.++|||||.++.
T Consensus 120 ----------~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 120 ----------GPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp ----------CCSGGGGGHHHHEEEEEEEEE
T ss_pred ----------CHHHHHHHHHHHcCCCcEEEE
Confidence 334668899999999999973
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-16 Score=137.47 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
..++|||||||+|.++..|++.|. +|+|+|.++.+++.|+.+.... .+++|.+++++++. .+.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 347899999999999999999988 8999999999999999887543 47899999999872 1567899999999999
Q ss_pred chhccCCCchHHHH--HHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISAS--QMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~--~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ .+.. ..+..+.+.|+++|..++..+..
T Consensus 145 ehv-------~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 145 HHI-------VHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHH-------HHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hcC-------CCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 999 5443 33556777788888777766543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-16 Score=118.30 Aligned_cols=102 Identities=5% Similarity=0.003 Sum_probs=83.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCC-CCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++.+.. ++++++++|+.+ ++ ..+++||+|++...++
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-QKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-SCCCCEEEEEECCSSS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-hcCCCCCEEEECCCCC
Confidence 4589999999999999888877668999999999999999987433 589999999987 45 5677999999987744
Q ss_pred hhccCCCchHHHHHHHHHHHH--hccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~~~ 118 (210)
. .....+++++.+ +|||||.+++...
T Consensus 134 -~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 134 -R-------GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -T-------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -C-------CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 3 455677777765 5999999987654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=118.61 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=84.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++. +..+++++|+++.+++.|+++.+.. +++++.++|+.+ + +++++||+|++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~-~~~~~fD~Vi~- 185 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-F-ISDQMYDAVIA- 185 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-C-CCSCCEEEEEE-
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-c-CcCCCccEEEE-
Confidence 34468999999999999999886 3458999999999999999987543 689999999987 4 67789999997
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++ ++...+++++.++|||||++++.+..
T Consensus 186 ----~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 186 ----DI-------PDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp ----CC-------SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred ----cC-------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 23 44568899999999999999888754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=114.72 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=81.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++.+. .+ +++++++|+.+.. .....||+|++...+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~~~ 132 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL-ADLPLPEAVFIGGGG 132 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG-TTSCCCSEEEECSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc-ccCCCCCEEEECCcc
Confidence 3468999999999999999998 44899999999999999998743 34 7999999998843 234579999986533
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+.. +++++.++|||||++++....
T Consensus 133 -----------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 133 -----------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp -----------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred -----------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 234 899999999999999887755
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=124.30 Aligned_cols=107 Identities=10% Similarity=0.047 Sum_probs=90.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++... .++++++.+|+. .+ ++. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~-~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ET-IPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TC-CCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CC-CCC-CceEEEhhh
Confidence 34578999999999999999886 4458999999 9999999988742 267999999998 44 555 899999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++|++ +.+...+++++++++|||||++++.+...+
T Consensus 277 vlh~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 277 VLHDW-----DDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp CGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred hhccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99998 455566999999999999999999886543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=112.92 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=81.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCC-CCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRD-MSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~-~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.... + ++ ++.+|+.+ ++ ..+++||+|++..
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~-~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFD-DVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGG-GCCSCCSEEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhh-ccCCCCCEEEECC
Confidence 4468999999999999999887 4558999999999999999987543 3 67 88888754 33 2238999999988
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+++ ..+++++.++|||||.+++.....
T Consensus 103 ~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 103 GLTA-----------PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp -TTC-----------TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred cccH-----------HHHHHHHHHhcCCCCEEEEEeecc
Confidence 8765 467999999999999998887654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=118.64 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=81.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--------CCCCcEEEEcccCC-CC-CCCCCcccE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--------EIPQLKYLQMDVRD-MS-FFEDESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--------~~~~v~~~~~d~~~-~~-~~~~~~fD~ 76 (210)
..+|||||||+|.++..+++. +...++|+|+|+.|++.|+++.. ...|+.++++|+.+ ++ .+++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 457999999999999999886 45589999999999999987642 34789999999987 43 156889999
Q ss_pred EEECCccchhccC-CCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 77 VIDKGTLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 77 Vi~~~~l~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|++.+.-.+.... ...+-....+++++.++|||||.+++.+..
T Consensus 127 v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 127 MFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 9875433221000 000001147999999999999999887643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-16 Score=117.67 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=82.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+|||+|.++..++.. +..+|+++|+|+.|++.++++.... . ++.+ .|.... .+.++||+|++..++
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~--~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD--VYKGTYDVVFLLKML 125 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH--HTTSEEEEEEEETCH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc--CCCCCcChhhHhhHH
Confidence 568999999999999999776 4449999999999999999998532 2 4544 555443 357889999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|++ ++.+..+.++.+.|||||.|+...
T Consensus 126 HlL-------~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 126 PVL-------KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHH-------HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred Hhh-------hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 999 888889999999999999997654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=125.30 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=90.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||||||+|.++..+++. +..+++++|+ +.+++.++++.... ++++++.+|+.+.+.+..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 578999999999999999886 4458999999 88999999876432 469999999987542245679999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
|++ +.++..+++++++++|||||++++.+...+
T Consensus 259 h~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 259 HYF-----DAREAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp GGS-----CHHHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred ccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 998 556679999999999999999999886543
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=118.05 Aligned_cols=101 Identities=9% Similarity=-0.008 Sum_probs=81.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC---CCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD---MSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~---~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+|+++|+|+.+++.+.++.+..+++.++++|+.+ ++ +.+++||+|++..
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~-~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYR-MLIAMVDVIFADV 155 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGG-GGCCCEEEEEECC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhc-ccCCcEEEEEEcC
Confidence 4568999999999999999987 3458999999999888777666544789999999987 34 4578999999854
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .. .....++.++.++|||||.+++..
T Consensus 156 ~--~~-------~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 156 A--QP-------DQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp C--CT-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--Cc-------cHHHHHHHHHHHHcCCCeEEEEEE
Confidence 4 11 445667899999999999998853
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=126.70 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=86.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++.+..+|+|+|+| .|++.|+++.+.. ++++++++|+.+++ ++ ++||+|++..+
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~D~Iv~~~~ 138 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-LP-EKVDVIISEWM 138 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CS-SCEEEEEECCC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cC-CcceEEEEcCh
Confidence 3456899999999999999999877799999999 9999999887432 45999999999988 66 89999999765
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+++ ........+++++.++|||||.+++..
T Consensus 139 ~~~l----~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 GYFL----LRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTB----TTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcc----cchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5443 122457889999999999999997643
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-15 Score=122.76 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||+|.++..+++. +..+++++|+ +.+++.++++.+. . ++++++.+|+.+.+ +++. |+|++..
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~--D~v~~~~ 264 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPEA--DAVLFCR 264 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-CCCC--SEEEEES
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-CCCC--CEEEEec
Confidence 34568999999999999999886 3458999999 9999999988742 2 45999999999876 6554 9999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++|++ +.+...+++++++++|||||++++.++..+
T Consensus 265 vlh~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 265 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp CGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred hhccC-----CHHHHHHHHHHHHHhcCCCCEEEEEecccC
Confidence 99998 445589999999999999999999886654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-15 Score=125.33 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=85.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++.... .+++|..+|+.+ + +++++||+|+++.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~-~~~~~fD~Ii~np 300 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-G-VEPFRFNAVLCNP 300 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-T-CCTTCEEEEEECC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-c-CCCCCeeEEEECC
Confidence 3789999999999999999873 558999999999999999987432 258889999987 4 6788999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+|+... .......++++++.++|||||.++++...
T Consensus 301 pfh~~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 301 PFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp CC---------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CcccCcc--cCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 9876311 12234567899999999999999887644
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=118.64 Aligned_cols=104 Identities=10% Similarity=0.059 Sum_probs=85.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCC---CCcccEEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFE---DESFDAVID 79 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~---~~~fD~Vi~ 79 (210)
....+|||||||+|..+..++.. +..+|+++|+|+.+++.++++.. ...+++++++|+.+++ .. +++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~-~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLA-REAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHT-TSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhh-cccccCCCceEEEE
Confidence 34568999999999999999876 55689999999999999999874 3357999999998876 32 479999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
..+ .+...+++.+.++|||||++++..-..+
T Consensus 158 ~a~-----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~ 188 (249)
T 3g89_A 158 RAV-----------APLCVLSELLLPFLEVGGAAVAMKGPRV 188 (249)
T ss_dssp ESS-----------CCHHHHHHHHGGGEEEEEEEEEEECSCC
T ss_pred CCc-----------CCHHHHHHHHHHHcCCCeEEEEEeCCCc
Confidence 643 3457899999999999999988764333
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=123.81 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+++|+| .|++.|+++.+. . ++++++.+|+.+++ +++++||+|++..+.+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 45899999999999999999877789999999 599999888743 2 56999999999988 7878999999986544
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++. .......++.++.++|||||.++
T Consensus 117 ~l~----~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 117 FLL----YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBS----TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hcc----cHHHHHHHHHHHHhhcCCCeEEE
Confidence 331 12567789999999999999986
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-15 Score=123.18 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=87.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++... . ++++++.+|+.+ + ++. .||+|++..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~-~~D~v~~~~ 256 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-LPV-TADVVLLSF 256 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CSC-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c-CCC-CCCEEEEec
Confidence 34568999999999999999886 3458999999 9999999988743 2 479999999976 3 444 399999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++|++ +.....+++++++++|||||++++.+.
T Consensus 257 vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 257 VLLNW-----SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99998 445556999999999999999999887
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=111.20 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||+|||+|.++..+++.+ +|+|+|+|+.|++. .++++++++|+.+ + +++++||+|+++..+++..
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-------~~~~~~~~~d~~~-~-~~~~~fD~i~~n~~~~~~~ 92 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-------HRGGNLVRADLLC-S-INQESVDVVVFNPPYVPDT 92 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-------CSSSCEEECSTTT-T-BCGGGCSEEEECCCCBTTC
T ss_pred CCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-------ccCCeEEECChhh-h-cccCCCCEEEECCCCccCC
Confidence 4589999999999999999877 89999999999987 2678999999988 4 5678999999998887641
Q ss_pred cC--CCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 88 CG--TNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 88 ~~--~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.. .....+...+++++.+.| |||.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 93 DDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp CCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred ccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 10 001123456788888888 99999887754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-15 Score=117.63 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=82.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.|+++. +++.+..+|+.+++ +++++||+|++.++.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCEEEEEEESCC--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCC-CCCCceeEEEEeCCh--
Confidence 4468999999999999999987 3458999999999999999886 67899999999988 888999999986542
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
..++++.++|||||.+++.+...
T Consensus 159 ------------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ------------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ------------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ------------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 23789999999999999887654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=118.44 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=88.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..++... ..+++|+|+++.+++.|+++.+.. .+++|.++|+.+++ .+.+.||+|+++.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~-~~~~~~D~Ii~np 280 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP-RFFPEVDRILANP 280 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG-GTCCCCSEEEECC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc-cccCCCCEEEECC
Confidence 345689999999999999998863 358999999999999999987533 47999999999987 6677899999986
Q ss_pred ccchhccCC-CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGT-NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~-~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+....... ........+++++.++|||||.+++++..
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 654321000 01133578999999999999999888743
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=112.89 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=84.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCC-CcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFED-ESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~-~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.. .+++++|+|+.+++.++++... . +++.+.++|+.+ + ++. ++||+|++..+
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A-LCKIPDIDIAVVGGS 109 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H-HTTSCCEEEEEESCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h-cccCCCCCEEEECCc
Confidence 44689999999999999999887 6999999999999999988743 2 578999999877 2 233 58999999877
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++++ ..+++++.++|+|||.+++..+.
T Consensus 110 ~~~~----------~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 110 GGEL----------QEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp TTCH----------HHHHHHHHHTEEEEEEEEEEECB
T ss_pred hHHH----------HHHHHHHHHhcCCCcEEEEEecC
Confidence 6544 78899999999999999887765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=122.48 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=88.7
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++... .++++++.+|+.+ + ++ +.||+|++..++|
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~-~~~D~v~~~~vl~ 244 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-VP-SNGDIYLLSRIIG 244 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-CC-SSCSEEEEESCGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-CC-CCCCEEEEchhcc
Confidence 78999999999999999886 4458999999 9999999988642 2579999999987 5 55 6799999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++ +.+...+++++++++|||||++++.+...
T Consensus 245 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 245 DL-----DEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp GC-----CHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred CC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 88 44566799999999999999999988653
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.5e-16 Score=115.02 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=83.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCC-C--CCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMS-F--FEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~-~--~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++... . ++++++++|+.+.. . +.+++||+|++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 4468999999999999998887766899999999999999988743 2 47999999987732 0 226789999998
Q ss_pred CccchhccCCCchHHHHHHHHHH--HHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i--~r~LkpgG~~~~~~~~ 119 (210)
.+++. ......++.+ .++|||||.+++....
T Consensus 124 ~~~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYAK--------QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCc--------hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 77542 2345556666 8999999999877644
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-17 Score=127.11 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.... ++++++++|+.+++ ++++||+|+++.++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCCc
Confidence 35689999999999999999987 49999999999999999987432 47999999998875 56799999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++. ......+.+++++|||||.+++
T Consensus 155 ~~~-------~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 155 GGP-------DYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp SSG-------GGGGSSSBCTTTSCSSCHHHHH
T ss_pred CCc-------chhhhHHHHHHhhcCCcceeHH
Confidence 887 5555577789999999998644
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-16 Score=117.98 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=78.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh------cCCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY------EEIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.++. ...+++.++++|+.+++ +++++ |.|..
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEEEE
Confidence 44689999999999999999873 458999999999888643222 22368999999999998 77777 77764
Q ss_pred CCcc-----chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTL-----DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l-----~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.... +|+ .+...++++++++|||||.+++.
T Consensus 105 ~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 105 LMPWGSLLRGVL-------GSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp ESCCHHHHHHHH-------TSSSHHHHHHHHTEEEEEEEEEE
T ss_pred Eccchhhhhhhh-------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 3321 134 44589999999999999999874
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=123.49 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++.+..+|+++|+|+ +++.|+++.+ .. ++++++.+|+.+++ ++ ++||+|++..++
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~-~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPMG 126 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEEECCCB
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-CC-CceeEEEEeCch
Confidence 4468999999999999999998777999999996 8888888764 22 67999999999987 55 689999999888
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+|+ ..+.....+.++.++|||||.+++.
T Consensus 127 ~~~-----~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YML-----FNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTB-----TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcC-----ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 876 3345677888999999999999753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=122.65 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=86.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ + ++++ |+|++..++|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFD-G-VPKG--DAIFIKWICH 272 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCC-C-CCCC--CEEEEechhh
Confidence 45578999999999999999886 4558999999 8888766532 689999999987 6 6654 9999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++ +.++..+++++++++|||||++++.+...+
T Consensus 273 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 273 DW-----SDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp GB-----CHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 98 556778999999999999999999987643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=115.45 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=85.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCC-CCCCC----CCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRD-MSFFE----DESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~-~~~~~----~~~fD~ 76 (210)
...+|||+|||+|..+..+++. ...+|+++|+++.+++.|+++.+. . ++++++++|+.+ ++.+. .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 3468999999999999999985 245899999999999999998742 2 469999999866 33122 278999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|++....++. .+..+++.++ ++|||||++++.+...
T Consensus 138 V~~d~~~~~~-------~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRY-------LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGH-------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccc-------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9998888777 6777888888 9999999998866543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=121.88 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=86.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..+++.+ ..+++++|+|+.|++.++++.... .++.+..+|+.+. .+++||+|+++.++|+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE---VKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT---CCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc---ccCCeeEEEECCCccc
Confidence 4689999999999999998874 348999999999999999987432 3467888888653 3679999999999875
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
... .......++++++.++|||||.++++...
T Consensus 274 g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 274 GMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred Ccc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 100 02267899999999999999999888654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=111.65 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=81.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++.+..++++++++|+.+.. ....++||+|++..
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~ 151 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence 34568999999999999999976 3 35899999999999999988876688999999998732 02246899999764
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. .. .....++.++.++|||||.+++.
T Consensus 152 ~--~~-------~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 152 A--QP-------TQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp C--ST-------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred C--CH-------hHHHHHHHHHHHhcCCCCEEEEE
Confidence 4 11 33455699999999999999887
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-16 Score=120.51 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=70.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CcEEEEcccCCCCCCCC-----CcccEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFED-----ESFDAVI 78 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~-----~~fD~Vi 78 (210)
....+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++..... +++++++|+.+ + +++ ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-W-LIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-H-HHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-h-hhhhhhccCcccEEE
Confidence 345689999999999999999873 3489999999999999998875432 68899999887 4 555 8999999
Q ss_pred ECCccchhcc-------------------CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMC-------------------GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~-------------------~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++..+++... +.........+++++.++|||||+++++.+.
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 9766543210 0011122388999999999999995565544
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=115.64 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=84.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeC-CHHHHHHHHHhh-----cCC-------CCcEEEEcccCCCC-CC---
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDI-SSVAIDMMKMKY-----EEI-------PQLKYLQMDVRDMS-FF--- 69 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~-----~~~-------~~v~~~~~d~~~~~-~~--- 69 (210)
...+|||+|||+|.++..+++.+..+|+++|+ |+.+++.++++. +.. +++++...|..+.. .+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 34589999999999999999887668999999 899999999987 322 26888877765531 11
Q ss_pred -CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhcc---C--CcEEEEEE
Q 028385 70 -EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK---P--GGIYMLIT 117 (210)
Q Consensus 70 -~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lk---p--gG~~~~~~ 117 (210)
.+++||+|++..++++. .+...+++++.++|| | ||.++++.
T Consensus 159 ~~~~~fD~Ii~~dvl~~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH-------QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp HSCSSBSEEEEESCCSCG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred ccCCCCCEEEEeCcccCh-------HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 36789999999999888 889999999999999 9 99876643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-15 Score=120.22 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=87.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.++++... . ++++++.+|+.+ + ++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P-LPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C-CCC-CccEEEEcc
Confidence 34568999999999999999886 3458999999 9999999988743 2 479999999876 3 444 499999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|++ +..+..+++++++++|||||++++.+..
T Consensus 258 vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 258 VLLNW-----PDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 99998 4455679999999999999999998876
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=121.79 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++|+.+|+.+ + ++.+ |+|++..++|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~-~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK-E-VPSG--DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-C-CCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC-C-CCCC--CEEEehHHhc
Confidence 45578999999999999999876 5558999999 888876654 2689999999988 6 7755 9999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++ +.++..+++++++++|||||++++.+...+
T Consensus 271 ~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 271 DW-----SDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp GS-----CHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 88 567788999999999999999999987643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=118.55 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=83.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.+ +. ++++++++|+.+.+ . +++||+|++....
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~-~-~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-G-ENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-C-CSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc-c-cCCccEEEECCch-
Confidence 46899999999999999999876579999999999999999874 33 34899999999987 4 7899999986442
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....++.++.++|||||.+++.++.
T Consensus 203 ----------~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 203 ----------RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp ----------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----------hHHHHHHHHHHHCCCCeEEEEEEee
Confidence 2356788999999999999988765
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-15 Score=112.44 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=82.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||+|||+|.++..+++... .+|+++|+++.+++.++++.. ..+++++..+|+.... ..+++||+|++..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIYTTA 154 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEEECC
Confidence 3456899999999999999988742 589999999999999998864 3357999999986532 2367899999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+++++ . +++.++|||||.+++.....
T Consensus 155 ~~~~~-------~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 155 AGPKI-------P------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp BBSSC-------C------HHHHHTEEEEEEEEEEESSS
T ss_pred chHHH-------H------HHHHHHcCCCcEEEEEECCC
Confidence 99988 2 48899999999998876433
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=117.13 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=84.7
Q ss_pred CCCCEEEeCCCC--chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC---CC--CCccc
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF---FE--DESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~---~~--~~~fD 75 (210)
+..+|||||||+ +.++..+++. +..+|+++|.|+.|++.|+++.... .++.|+++|+.+.+. .+ .+.||
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 445799999997 4444555443 5568999999999999999998654 369999999988520 11 34555
Q ss_pred -----EEEECCccchhccCCCchHH-HHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 76 -----AVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 76 -----~Vi~~~~l~~~~~~~~~~~~-~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.|+++.+|||+ +..+ +..+++++.+.|+|||+|++.+....
T Consensus 158 ~~~p~av~~~avLH~l-----~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFV-----LDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGS-----CGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcC-----CchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 68899999999 2222 68899999999999999999887653
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=113.63 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=82.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhhcC-------CCCcEEEEcccCCCCCCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GY-EDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~fD~V 77 (210)
...+|||+|||+|..+..+++. +. .+|+++|+++.+++.++++... ..++.+.++|+...+ ..+++||+|
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i 155 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDAI 155 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCcCEE
Confidence 4468999999999999999876 32 4899999999999999988643 357999999998765 456789999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++...++++ ++++.++|||||.+++....
T Consensus 156 ~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 156 HVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred EECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 999888776 46889999999999887643
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=114.82 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=75.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCC-HHHHHHH---HHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDIS-SVAIDMM---KMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s-~~~~~~a---~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+|||||||+|.++..+++. +..+|+|+|+| +.|++.| +++.. ..+++.+.++|+.+++....+.+|.|.++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 457999999999999999864 44589999999 7777776 65543 33689999999998761112556666655
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.+.+... ....+...++++++|+|||||.+++.
T Consensus 105 ~~~~~~~~--~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 105 FPWGTLLE--YVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp SCCHHHHH--HHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcHHhh--hhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 43322100 00012356899999999999999883
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-15 Score=114.93 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCC-CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.|+++.+.. ++++++++|+.+... ..+++||+|++..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 3468999999999999999984 3458999999999999999987432 489999999987531 1267999999754
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. .....+++++.++|||||++++-.
T Consensus 151 ~~----------~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 AK----------AQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TS----------SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cH----------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 32 456779999999999999997743
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=114.01 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=84.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC-----C-C----------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI-----P-Q---------------------- 55 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~-----~-~---------------------- 55 (210)
...+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++.... . +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4468999999999999999875 2348999999999999999876433 1 1
Q ss_pred ---cE-------------EEEcccCCCCCC----CCCcccEEEECCccchhccC--CCchHHHHHHHHHHHHhccCCcEE
Q 028385 56 ---LK-------------YLQMDVRDMSFF----EDESFDAVIDKGTLDSLMCG--TNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 56 ---v~-------------~~~~d~~~~~~~----~~~~fD~Vi~~~~l~~~~~~--~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
++ +.++|+.+.... ..++||+|+++..+.+...- .........+++++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 66 999998774201 34589999998776543110 112467889999999999999999
Q ss_pred EEEEc
Q 028385 114 MLITY 118 (210)
Q Consensus 114 ~~~~~ 118 (210)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 88543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=118.96 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||||||+|.++..+++. +..+++++|++ .++. +++.+. .++++++.+|+. .+ ++ +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~-~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-RE-VP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TC-CC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CC-CC--CCcEEEEeh
Confidence 34568999999999999999886 44579999994 4444 322221 257999999997 34 55 899999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++|++ +..+..+++++++++|||||++++.+...
T Consensus 256 vlh~~-----~d~~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 256 ILHNW-----GDEDSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred hccCC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 99998 44555899999999999999999988653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=107.20 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=81.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++ +..+++++|+|+.+++.++++.... +++++.++|+.+ + +++++||+|++..+ +
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~D~i~~~~~-~ 110 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V-LDKLEFNKAFIGGT-K 110 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H-GGGCCCSEEEECSC-S
T ss_pred CCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c-ccCCCCcEEEECCc-c
Confidence 446899999999999999998 5559999999999999999987433 679999999988 5 66789999999876 2
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+...+++++.++ |||.+++....
T Consensus 111 ----------~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 111 ----------NIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp ----------CHHHHHHHHHHT--TCCEEEEEESC
T ss_pred ----------cHHHHHHHHhhC--CCCEEEEEecc
Confidence 346788888888 99999888754
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-15 Score=119.54 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=82.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+. .+|+++|+|+.+++.|+++.+ ..+++++.++|+.+.+ ..+++||+|++..+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIFVTVG 153 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSB
T ss_pred CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCCCeEEEEEcCC
Confidence 446899999999999999988733 359999999999999999874 3367999999998865 45678999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++|+ . +++.++|||||++++..
T Consensus 154 ~~~~-------~------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 154 VDEV-------P------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp BSCC-------C------HHHHHHEEEEEEEEEEB
T ss_pred HHHH-------H------HHHHHhcCCCcEEEEEE
Confidence 9998 2 57889999999998774
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-15 Score=124.55 Aligned_cols=97 Identities=21% Similarity=0.202 Sum_probs=79.8
Q ss_pred CCCCEEEeCCC------CchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC------CC
Q 028385 7 GTRDTCRRAAP------SIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE------DE 72 (210)
Q Consensus 7 ~~~~vLdiGcG------~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~------~~ 72 (210)
...+||||||| +|..+..+++. +..+|+|+|+|+.|. ...++++|+++|+.+++ +. ++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~dlp-f~~~l~~~d~ 287 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQNDAE-FLDRIARRYG 287 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTCHH-HHHHHHHHHC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccccc-hhhhhhcccC
Confidence 34689999999 66667677654 456899999999973 12378999999999987 66 68
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+||+|++... |+. .+..+++++++++|||||++++.++.
T Consensus 288 sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 288 PFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 9999999754 566 78899999999999999999988754
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.6e-15 Score=120.00 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=84.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ + ++. ||+|++..++||
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p~--~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-S-IPN--ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-C-CCC--CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-C-CCC--ccEEEeehhhcc
Confidence 3468999999999999999876 4458999999 9998877652 569999999976 5 553 999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccC---CcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKP---GGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkp---gG~~~~~~~~~ 120 (210)
+ +.....+++++++++||| ||++++.+...
T Consensus 259 ~-----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 259 W-----TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp S-----CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred C-----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 8 334455999999999999 99999988653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-15 Score=116.60 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=82.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.... ..+++.++|+.+. +++++||+|+++...+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLYAE- 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECCHH-
T ss_pred CCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCCEEEECCcHH-
Confidence 346899999999999999999877 9999999999999999987432 1289999998762 3467899999976544
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....++.++.++|||||++++..+.
T Consensus 196 ---------~~~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 196 ---------LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp ---------HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ---------HHHHHHHHHHHHcCCCCEEEEEeec
Confidence 3478899999999999999887654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.4e-15 Score=121.93 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=83.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + ++. ||+|++..++|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-S-VPQ--GDAMILKAVCH 278 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-C-CCC--EEEEEEESSGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-C-CCC--CCEEEEecccc
Confidence 34578999999999999999887 3457899999 998887654 2679999999987 6 665 99999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ +.....+++++++++|||||++++.++.
T Consensus 279 ~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 279 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 98 3344559999999999999999998754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=124.97 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=85.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++.+..+|+++|+|+ +++.|+++.+. . ++++++.+|+.+++ ++ ++||+|++..++
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-~~-~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPMG 234 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCH
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-cC-CCeEEEEEeCch
Confidence 3468999999999999999988777999999998 99999887643 2 67999999999876 54 589999998887
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+++ ..+.....+.++.++|||||.+++
T Consensus 235 ~~~-----~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YML-----FNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHH-----TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred Hhc-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 776 335667788899999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-15 Score=120.64 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=80.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...|||||||+|.++...++.|.++|+++|.|+ |++.|++..+. . .+++++.+|++++. ++ ++||+|++-..-.
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-LP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-CC-ccccEEEeecccc
Confidence 347999999999999999999888999999996 78888877642 2 57999999999987 65 6899999843322
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.+ .....+..++....|+|||||.++-
T Consensus 161 ~l----~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 161 GL----LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp TB----TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cc----cccchhhhHHHHHHhhCCCCceECC
Confidence 21 1225678889999999999998754
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=111.63 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=80.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc----------CCCCcEEEEcccCC-CC-CCCCCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE----------EIPQLKYLQMDVRD-MS-FFEDES 73 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~----------~~~~v~~~~~d~~~-~~-~~~~~~ 73 (210)
...+|||||||+|.++..+++.+ ..+++|+|+|+.+++.++++.. ..+++.++++|+.+ ++ .++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 34579999999999999999874 4489999999999999988753 34689999999987 43 256789
Q ss_pred ccEEEECCccchhccC-CCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~-~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|.|+....--+.-.. ...+.....+++++.++|||||.+++.+
T Consensus 129 ~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 129 LSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp EEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 9999853221110000 0000001589999999999999998865
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=112.91 Aligned_cols=102 Identities=7% Similarity=0.063 Sum_probs=82.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCC-CCCCC-CCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRD-MSFFE-DESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~-~~~~~-~~~fD~Vi~ 79 (210)
...+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++... . +++++.++|+.+ ++.+. .++||+|++
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 3468999999999999999986 2 45899999999999999998742 2 479999999977 33122 348999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.... .....+++++.++|||||++++.+.
T Consensus 143 d~~~----------~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DADK----------PNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSCG----------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCch----------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 6532 5567899999999999999987654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=109.45 Aligned_cols=104 Identities=13% Similarity=-0.006 Sum_probs=77.0
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC--CCCCcccEEEEC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDK 80 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~~ 80 (210)
.....+|||+|||+|.++..+++. +..+|+++|+|+.|++.+.+..+...|+.++++|+..... ...++||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 344578999999999999999875 3458999999999876554443333789999999987431 224689999987
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... . .....+...+.++|||||++++..
T Consensus 154 ~a~--~-------~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 154 IAQ--P-------DQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CCC--T-------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCC--h-------hHHHHHHHHHHHhCCCCeEEEEEE
Confidence 543 1 334445566777999999998764
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=7e-15 Score=113.38 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C--CCcEEEEcccCCC-CCCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~--~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~ 81 (210)
.+|||+|||+|..+..+++. +..+|+++|+++.+++.|+++.+. . ++++++++|+.+. +.+++++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 48999999999999999885 245899999999999999998743 2 3799999998774 224478999999865
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. .+...+++++.++|||||++++-+
T Consensus 138 ~~----------~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 138 SP----------MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CT----------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cH----------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 42 445678999999999999998743
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.1e-15 Score=117.62 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=74.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcE-EEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLK-YLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~-~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||||.++..+++.+..+|+|+|+|+.|++.+.++. +++. +...|+..++ .++..+||+|++..++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf 161 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSF 161 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGGCTTCCCSEEEECCSS
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhhCCCCCCCEEEEEeeH
Confidence 34589999999999999999988779999999999999865432 3332 2234444433 1345569999998877
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+++ ..++.+++|+|||||.++++
T Consensus 162 ~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 162 ISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp SCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred hhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 654 67899999999999999887
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=112.47 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=79.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCC-cccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++....+|+++|+++.+++.|+++.+. ..++++..+|+ ..+ ++++ .||+|++..++
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~-~~~~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKG-FPPKAPYDVIIVTAGA 168 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGC-CGGGCCEEEEEECSBB
T ss_pred CCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccC-CCCCCCccEEEECCcH
Confidence 4468999999999999999887425899999999999999998743 35799999998 333 4444 59999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++ . +++.++|||||++++....
T Consensus 169 ~~~-------~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 169 PKI-------P------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp SSC-------C------HHHHHTEEEEEEEEEEECS
T ss_pred HHH-------H------HHHHHhcCCCcEEEEEEec
Confidence 887 2 3789999999999877643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-15 Score=110.03 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CcEEEEcccCCC-CCC--CCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDM-SFF--EDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~v~~~~~d~~~~-~~~--~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..+++.+. +++++|+|+.+++.|+++..... ++++.++|+.+. +.. ..++||+|++..+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 345899999999999999999876 59999999999999998874322 789999998873 211 1348999999876
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++ - ......+.+.+ .++|||||.+++.....
T Consensus 120 ~~-~-----~~~~~~~~~~~-~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 120 YA-M-----DLAALFGELLA-SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp TT-S-----CTTHHHHHHHH-HTCEEEEEEEEEEEETT
T ss_pred Cc-h-----hHHHHHHHHHh-hcccCCCcEEEEEeCCc
Confidence 64 1 11233333333 49999999998876544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=114.13 Aligned_cols=100 Identities=10% Similarity=0.135 Sum_probs=84.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++.+. .+++++..+|+.+.+ +++++||+|++.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-~~~~~~D~v~~~- 173 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE-LEEAAYDGVALD- 173 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC-CCTTCEEEEEEE-
T ss_pred CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC-CCCCCcCEEEEC-
Confidence 4468999999999999999987 3 45899999999999999988642 368999999999887 778899999972
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. .+...+++++.++|||||.+++....
T Consensus 174 ----~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 174 ----L-------MEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp ----S-------SCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred ----C-------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 2 34557899999999999999888754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=117.49 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=81.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCC-CCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSF-FEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~-~~~~~fD~Vi 78 (210)
...+|||||||+|.++..+++. +..+++++|+++.+++.|+++.. ..++++++.+|+.+... ..+++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 3468999999999999999987 45689999999999999998762 23689999999987541 1478999999
Q ss_pred ECCccchhccCCCchHHH--HHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+....++. +.... .+++++++++|||||++++..
T Consensus 175 ~d~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 175 IDTTDPAG-----PASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EECC--------------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccc-----cchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 96654332 11111 688999999999999998765
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=104.94 Aligned_cols=105 Identities=18% Similarity=0.171 Sum_probs=80.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC-------CCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~fD~V 77 (210)
...+|||+|||+|.++..+++. + ..+++++|+++ +++. +++++.++|+.+.+. +++++||+|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i 92 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhccCCCCceeEE
Confidence 3458999999999999999887 3 35899999999 6532 678999999987530 356799999
Q ss_pred EECCccchhccCCCchHH------HHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 78 IDKGTLDSLMCGTNAPIS------ASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~------~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+++.++++... ..... ...+++++.++|||||.+++..+..+.
T Consensus 93 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 93 MSDMAPNMSGT--PAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EECCCCCCCSC--HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EECCCccccCC--CccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 99888776410 01111 168999999999999999988776543
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-14 Score=118.87 Aligned_cols=103 Identities=9% Similarity=-0.023 Sum_probs=81.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHH-------HHhhc--C--CCCcEEEEcccCCCC-CC--CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMM-------KMKYE--E--IPQLKYLQMDVRDMS-FF--ED 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a-------~~~~~--~--~~~v~~~~~d~~~~~-~~--~~ 71 (210)
...+|||+|||+|.++..+++. +..+|+|+|+++.+++.| +++.. + ..+++++++|....+ .+ ..
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~~ 321 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI 321 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccccc
Confidence 4568999999999999999986 555799999999999988 66653 2 358999987654221 01 24
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++||+|+++..+ +. .+...+++++.++|||||.+++.+
T Consensus 322 ~~FDvIvvn~~l-~~-------~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 322 PQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp GGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CCCCEEEEeCcc-cc-------ccHHHHHHHHHHhCCCCeEEEEee
Confidence 689999987665 23 677888999999999999998874
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=112.34 Aligned_cols=109 Identities=11% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. ..++++++++|+.+. +++++||+|+++..+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~~fD~Iv~npPy 186 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNPPY 186 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTCCEEEEEECCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh--cccCCccEEEECCCC
Confidence 3468999999999999999865 55689999999999999999874 335799999999773 446789999998554
Q ss_pred chhc------------------cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLM------------------CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~------------------~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.... .+..+......+++++.++|||||++++..
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 3210 000112467889999999999999997754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=115.21 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=84.3
Q ss_pred CCCEEEeCCCCchhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCC-CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l 83 (210)
..+|||||||+|.++..+++ .+..+++++|+++.+++.|+++... .++++++.+|+.... .+++++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45899999999999999998 4555899999999999999998853 368999999998742 2457899999986433
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+.. ....-...+++++++++|||||++++....
T Consensus 170 ~~~---~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 170 GAI---TPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp TSC---CCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccc---cchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 211 000011268999999999999999876643
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.6e-14 Score=105.53 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=75.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.++++.. +++++++|+.+++ ++||+|+++.++++.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~~----~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEIS----GKYDTWIMNPPFGSV 123 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGCC----CCEEEEEECCCC---
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHCC----CCeeEEEECCCchhc
Confidence 446899999999999999998866579999999999999999874 7899999998754 689999999999887
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
......++++++.+++ |+.+++.
T Consensus 124 -----~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 124 -----VKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ---------CHHHHHHHHHHE--EEEEEEE
T ss_pred -----cCchhHHHHHHHHHhc--CcEEEEE
Confidence 1122357899999998 5544333
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=112.08 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=81.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C------CCcEEEEeCCHHHHHHHHHhhcC-------CCCcEEEEcccCCCCCCCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G------YEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFED- 71 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~------~~~v~~vD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~- 71 (210)
...+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++... .+++++..+|+.+ + +++
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~ 161 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-G-YPPN 161 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-C-CGGG
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-C-CCcC
Confidence 3468999999999999999875 3 14899999999999999988643 3589999999987 3 444
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++||+|++...++++ .+++.++|||||++++...
T Consensus 162 ~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEe
Confidence 789999999999887 3788999999999987653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=114.40 Aligned_cols=100 Identities=16% Similarity=0.232 Sum_probs=84.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++. +..+++++|+++.+++.|+++... .+++++.++|+.+.+ +++++||+|++
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-~~~~~~D~v~~ 177 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRAVL 177 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC-CCCCceeEEEE
Confidence 4458999999999999999985 345899999999999999988732 368999999999887 77889999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. + .+...+++++.++|||||.+++....
T Consensus 178 ~-----~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 178 D-----M-------LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp E-----S-------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred C-----C-------cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 3 2 34457899999999999999887754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=109.10 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCC-CCC---CCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMS-FFE---DESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~-~~~---~~~fD~V 77 (210)
...+|||+|||+|..+..+++. + ..+++++|+++.+++.|+++.. .. ++++++++|+.+.. .+. .++||+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 3468999999999999999987 2 4589999999999999998874 23 45999999987631 011 2679999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
++.... .....+++++.++|||||.+++.+.
T Consensus 138 ~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDADK----------QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSCG----------GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCCc----------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986552 4567899999999999998877543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=111.28 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=89.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
+..+|||||||+|.++..+++. +..+++..|. |.+++.++++.+. .++++++.+|+...+ .+ .+|+|+.+.+|
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-LP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-CC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-CC--CceEEEeeeec
Confidence 3457999999999999999886 5557888886 8899999988743 278999999998755 44 47999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
|++ +.++..++|+++++.|+|||++++++...
T Consensus 255 h~~-----~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 255 HDW-----ADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp GGS-----CHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred ccC-----CHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 998 66777899999999999999999998753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-14 Score=115.48 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=82.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCC-CCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~fD~Vi 78 (210)
...+|||||||+|.++..+++. +..+|+++|+|+.+++.|+++... .++++++++|+.+. +.+++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3468999999999999999987 446899999999999999998742 26899999998764 214467899999
Q ss_pred ECCccchhccCCCchHH--HHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+......- .... ...+++++.++|||||++++.
T Consensus 200 ~d~~~p~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 200 VDSSDPIG-----PAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp ECCCCTTS-----GGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCCccC-----cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 86542110 0011 478999999999999999775
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-14 Score=109.05 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=79.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++.+.. ++++++++|+.+. + ..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA-GQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT-TCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc-cCCC-CCEEEEcC
Confidence 468999999999999999886 2 458999999999999999887422 4689999999764 4 3456 99999763
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . .+...+++++.++|||||.+++.+
T Consensus 135 ~---~-------~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D---V-------FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T---T-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C---h-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 1 456789999999999999997754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=109.65 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=81.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-CCCC----CCcccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-SFFE----DESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~~~~----~~~fD~V 77 (210)
..+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++.+. . ++++++++|+.+. +.+. .++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 458999999999999999986 2 45899999999999999998743 2 4699999998653 2111 1789999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++.... .+...+++++.++|||||++++.+..
T Consensus 145 ~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 145 YIDADK----------ANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EECSCG----------GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EECCCH----------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 975432 56788999999999999999886543
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=112.18 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=77.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC---CCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~fD~Vi~ 79 (210)
..+|||||||+|..+..+++. +..+|+++|+|+.|++.|+.. .++++++++|+.+. +...+.+||+|++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---CCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 358999999999999999875 345899999999999888732 26899999999884 4123347999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHH-hccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r-~LkpgG~~~~~~~ 118 (210)
... | .+...++.++.+ +|||||++++.++
T Consensus 159 d~~--~--------~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 159 DNA--H--------ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp ESS--C--------SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCc--h--------HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 654 2 245779999997 9999999988653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=114.26 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCC--CcEEEEcccCCCCCC---CCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIP--QLKYLQMDVRDMSFF---EDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~--~v~~~~~d~~~~~~~---~~~~fD~Vi~~ 80 (210)
..+|||+|||+|.++..+++.+. +|+++|+|+.+++.|+++.+ ... +++++++|+.+.... .+++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 35899999999999999999877 99999999999999999874 223 489999999874301 15689999996
Q ss_pred CccchhccC---CCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCG---TNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~---~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
......... .....+...+++++.++|||||.+++....
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 542111000 001267889999999999999997665533
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=115.62 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-------CCCcEEEEcccCC-CCCCCCCcccEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRD-MSFFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~-~~~~~~~~fD~Vi 78 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|+++... .++++++.+|+.+ ++ ..+++||+|+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Ii 156 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE-RTEERYDVVI 156 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH-HCCCCEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHH-hcCCCccEEE
Confidence 468999999999999999987 456899999999999999987632 3689999999987 34 3567899999
Q ss_pred ECCccchhccCCCchHH--HHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+....+....+ +... ..+++++++++|||||++++..
T Consensus 157 ~d~~~~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTDPVGEDN--PARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCCCBSTTC--GGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCcccccC--cchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 97654330000 1111 4789999999999999998764
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=109.56 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=81.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC------CcEEEEeCCHHHHHHHHHhhcC-------CCCcEEEEcccCCCCC---CC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY------EDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSF---FE 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~---~~ 70 (210)
...+|||+|||+|.++..+++... .+|+++|+++.+++.|+++... ..++++..+|+.+... ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 346899999999999999988632 4899999999999999988642 3579999999887320 13
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++||+|++...++++ ++++.++|||||++++...
T Consensus 160 ~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEc
Confidence 5689999999988876 5788999999999987753
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-14 Score=110.17 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCC--CCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFE--DESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~--~~~fD~Vi~~ 80 (210)
..+|||+|||+|..+..+++. +..+|+++|+++.+++.|+++.... +++.+.++|+.+. + .. +++||+|++.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE-KLELYPLFDVLFID 133 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH-HHTTSCCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH-hcccCCCccEEEEC
Confidence 458999999999999999887 3458999999999999999987432 4699999999874 3 22 5789999986
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
... .+...+++++.++|||||.+++.+.
T Consensus 134 ~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 134 AAK----------GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GGG----------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCH----------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 553 3567899999999999999987643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=112.21 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=84.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++.+ ...++.++++|+.+++ ..+++||+|++...
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-cccccCCEEEEeCC
Confidence 3468999999999999999875 33589999999999999999874 3357999999999876 44678999998533
Q ss_pred cchhc-cCCCc-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLM-CGTNA-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~-~~~~~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..... ....+ . ....++++++.++|||||++++.+++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 21110 00000 0 12368999999999999999988775
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=109.26 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=82.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc--CCC-CcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE--EIP-QLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~--~~~-~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++.+ ..+ ++++.++|+.+. +++++||+|++.
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~- 169 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG--IEEENVDHVILD- 169 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC--CCCCSEEEEEEC-
T ss_pred CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc--cCCCCcCEEEEC-
Confidence 4468999999999999999987 3 5589999999999999999874 233 499999999864 577889999973
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. .+...+++++.++|||||.+++....
T Consensus 170 ----~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 170 ----L-------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp ----S-------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ----C-------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 2 34467899999999999999887643
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=104.79 Aligned_cols=102 Identities=12% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----------------
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----------------- 67 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----------------- 67 (210)
..+|||+|||+|.++..+++. + ..+|+|+|+|+.+ ..+++.+.++|+.+.+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~ 93 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNS 93 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC-----------CH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhccccccccccchh
Confidence 358999999999999999886 3 4589999999831 2367899999998753
Q ss_pred -------CCCCCcccEEEECCccchhccCCCchH------HHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 68 -------FFEDESFDAVIDKGTLDSLMCGTNAPI------SASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 68 -------~~~~~~fD~Vi~~~~l~~~~~~~~~~~------~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.+++++||+|++...+++.. ..... ....+++++.++|||||.+++..+..
T Consensus 94 ~~~~~~~~~~~~~fD~v~~~~~~~~~g--~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 94 VDYKLKEILQDKKIDIILSDAAVPCIG--NKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCCCCS--CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hHHHHHhhcCCCcccEEEeCCCcCCCC--CcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 03567999999988766520 00001 12358999999999999998876654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=101.30 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-----------CCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-----------DESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~fD 75 (210)
...+|||+|||+|.++..+++. ..+|+|+|+++. ...++++++++|+.+.+ .. .++||
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~---------~~~~~v~~~~~D~~~~~-~~~~~~~~~~~~~~~~~D 93 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM---------EEIAGVRFIRCDIFKET-IFDDIDRALREEGIEKVD 93 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC---------CCCTTCEEEECCTTSSS-HHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc---------ccCCCeEEEEccccCHH-HHHHHHHHhhcccCCcce
Confidence 3468999999999999999988 448999999974 12368999999998754 11 14899
Q ss_pred EEEECCccchhccCC------CchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 76 AVIDKGTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+|++....... +. ........+++.+.++|||||.|++..+..+.
T Consensus 94 ~Vlsd~~~~~~--g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 94 DVVSDAMAKVS--GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp EEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred EEecCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 99997543211 00 01123567899999999999999988876655
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-14 Score=110.68 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=84.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++.+ +..++.++++|+.+.+ . .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c-cCCceEEEECCcc
Confidence 4468999999999999999987 45589999999999999999874 3367899999998875 4 6789999986543
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+...++.++.+.|||||.+++.++..
T Consensus 197 -----------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 -----------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -----------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -----------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 34567889999999999998877643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=105.05 Aligned_cols=119 Identities=8% Similarity=-0.016 Sum_probs=92.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||||||+|.++..+++.+ ..+|+++|+++.+++.|+++.+.. .++++.++|+.+.. .+++.||+|+..++.
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-EEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-ccccccCEEEEeCCc
Confidence 3589999999999999999985 457999999999999999988533 46999999998865 444579998864432
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
-.....++.+..+.|+++|+|++...........++. ..+|.+.
T Consensus 101 ---------g~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~--~~Gf~i~ 144 (230)
T 3lec_A 101 ---------GRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLA--ANDFEIV 144 (230)
T ss_dssp ---------HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH--HTTEEEE
T ss_pred ---------hHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHH--HCCCEEE
Confidence 2457888999999999999998877666555555542 3456654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=114.27 Aligned_cols=104 Identities=14% Similarity=0.252 Sum_probs=82.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCC-CCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~fD~Vi~ 79 (210)
..+|||||||+|.++..+++. +..+++++|+|+.+++.|+++... .++++++++|+.+. + ..+++||+|++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLE-NVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHH-HCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHh-hcCCCceEEEE
Confidence 468999999999999999987 456899999999999999998754 36899999998763 3 34678999998
Q ss_pred CCccchhccCCCchHHH--HHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... +++ + +.... .++++++.++|||||++++..
T Consensus 196 d~~-~p~--~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 196 DSS-DPI--G--PAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp ECC-CSS--S--GGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCc-CCC--C--cchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 643 111 0 11222 789999999999999998764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=113.34 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=80.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~-~~~~~~~~fD~Vi~ 79 (210)
..+|||+|||+|.++..+++. +..+|+++|+++.+++.|+++... .++++++.+|+.+ ++ ..+++||+|++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-KFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-GCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCceEEEE
Confidence 368999999999999999987 556899999999999999988632 3689999999877 34 34678999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...-+++ +........++++++.++|||||++++..
T Consensus 170 d~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 5432112 00000012688999999999999998764
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=113.96 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=82.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|+++.++|+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-S-IP--SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-C-CC--CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-C-CC--CceEEEEcccccC
Confidence 3468999999999999999886 4458999999 788876654 3579999999987 6 66 4999999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccC---CcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKP---GGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkp---gG~~~~~~~~ 119 (210)
+ +.....+++++++++||| ||++++.++.
T Consensus 264 ~-----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 264 W-----NDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp S-----CHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred C-----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 8 334455999999999999 9999998765
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-14 Score=111.57 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc----C--CCCcEEEEcccCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE----E--IPQLKYLQMDVRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~----~--~~~v~~~~~d~~~-~~~~~~~~fD~Vi~ 79 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|+++.. . .++++++.+|+.. ++ ..+++||+|++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~fD~Ii~ 154 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA-KSENQYDVIMV 154 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH-TCCSCEEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-hCCCCeeEEEE
Confidence 468999999999999999987 56699999999999999998762 1 3689999999877 34 34678999999
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+.. . ...-...++++++.++|||||++++..
T Consensus 155 d~~~~~~-~--~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVG-P--AVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCS-C--CCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCC-c--chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 6543211 0 000012578999999999999997764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=112.62 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=80.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCC-CCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRD-MSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+| |+|.++..+++.+. .+|+++|+|+.|++.|+++.+. ..+++++++|+.+ ++...+++||+|+++.++
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 46899999 99999999988754 6899999999999999998742 3479999999998 651135689999998876
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
+.. ....+++++.++|||||.+
T Consensus 252 ~~~--------~~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 252 TLE--------AIRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp SHH--------HHHHHHHHHHHTBCSTTCE
T ss_pred chH--------HHHHHHHHHHHHcccCCeE
Confidence 653 3588999999999999954
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=106.75 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=81.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++. ..+++++|+++.+++.|+++... . +++++..+|+.+.. ++++.||+|++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~--- 165 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVD--- 165 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEEC---
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEEC---
Confidence 4468999999999999999988 45899999999999999988743 2 57899999998753 367789999973
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. .+...+++++.++|||||.+++....
T Consensus 166 --~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 166 --V-------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp --S-------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred --C-------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 34457799999999999999887753
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-14 Score=113.61 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=80.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCC-CCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRD-MSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~-~~~~~~~~fD~Vi~ 79 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|+++... .++++++.+|+.+ ++ ..+++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~-~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK-QNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-TCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh-hCCCCceEEEE
Confidence 468999999999999999987 446899999999999999988642 3789999999876 34 45678999998
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....+.. ........++++++.++|||||++++..
T Consensus 175 d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSDPMG---PAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC--------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCC---cchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6543211 0000123578999999999999998765
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-13 Score=101.57 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=79.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+..+++++|+|+.+++.++++..... +++++++|+.+++ ++||+|+++..+++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC----CCCCEEEEcCCCcc
Confidence 346899999999999999999876689999999999999999875432 7999999998865 38999999988776
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .......+++++.+++ |+.+ +..
T Consensus 125 ~-----~~~~~~~~l~~~~~~l--~~~~-~~~ 148 (207)
T 1wy7_A 125 Q-----RKHADRPFLLKAFEIS--DVVY-SIH 148 (207)
T ss_dssp S-----STTTTHHHHHHHHHHC--SEEE-EEE
T ss_pred c-----cCCchHHHHHHHHHhc--CcEE-EEE
Confidence 5 2233457788899988 5544 444
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=111.45 Aligned_cols=101 Identities=18% Similarity=0.205 Sum_probs=77.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhhcC-------------CCCcEEEEcccCCCC-CCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GY-EDIVNIDISSVAIDMMKMKYEE-------------IPQLKYLQMDVRDMS-FFE 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~-------------~~~v~~~~~d~~~~~-~~~ 70 (210)
...+|||+|||+|.++..+++. +. .+|+++|+++.+++.|+++... ..++++..+|+.+.. .++
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 3458999999999999999986 43 5899999999999999998642 257999999998862 266
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+++||+|++... ....++.++.++|||||.+++....
T Consensus 185 ~~~fD~V~~~~~------------~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 185 SLTFDAVALDML------------NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ---EEEEEECSS------------STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCCeeEEEECCC------------CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 778999998532 2233789999999999999877643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-14 Score=113.33 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCC-CCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~fD~Vi~ 79 (210)
..+|||||||+|..+..+++. +..+++++|+++.+++.|+++... .++++++.+|+.+. + ..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~-~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLK-NHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHH-HCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHH-hcCCCceEEEE
Confidence 468999999999999999987 456899999999999999998753 26799999998773 3 34678999998
Q ss_pred CCccchhccCCCchHHH--HHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... +++ + +.... .++++++.++|||||++++..
T Consensus 188 d~~-~~~--~--~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 188 DSS-DPV--G--PAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CCC------------------HHHHHHHHEEEEEEEEEEC
T ss_pred cCC-CCC--C--cchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 653 222 0 11111 788999999999999997653
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-14 Score=111.79 Aligned_cols=105 Identities=12% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+|||||||+|.++..+++. +..+++++|+++.+++.|+++... .++++++.+|+.+.....+++||+|++.
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 468999999999999999887 356899999999999999998753 3689999999877320236789999985
Q ss_pred CccchhccCCCchHHH--HHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+.. +.... .+++++++++|||||++++..
T Consensus 159 ~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 159 SSDPIG-----PAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp CCCTTT-----GGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 443221 11222 689999999999999997764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-14 Score=110.42 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=84.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCC----CCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF----EDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~----~~~~fD~Vi 78 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+. ..+++++++|+.+++ . ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~-~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYK-DYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHH-HHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcc-hhhhhccccCCEEE
Confidence 3458999999999999999874 435899999999999999998743 358999999998765 3 267899999
Q ss_pred ECCccchhccCC-----------CchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMCGT-----------NAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~~~-----------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+.........-. .......++++++.++|||||.+++.+++
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 863322110000 00024578999999999999999988765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.1e-15 Score=114.22 Aligned_cols=102 Identities=11% Similarity=0.047 Sum_probs=82.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCC-----CCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFE-----DESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~-----~~~fD~ 76 (210)
+..+|||+|||+|..+..+++. ...+|+++|+++.+++.|+++.+. . ++++++++|+.+..... +++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 3468999999999999999985 245899999999999999988743 2 58999999997642011 478999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|++.... .+...+++++.++|||||++++.+.
T Consensus 140 V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDADK----------TNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCCh----------HHhHHHHHHHHHhcCCCeEEEEECC
Confidence 9976542 5667899999999999999988553
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=104.45 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=90.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||||||+|.++..+++.+ ..+|+++|+++.+++.|+++.+.. .++++.++|+.+.. .++++||+|+..++-
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-~~~~~~D~IviagmG 100 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-EKKDAIDTIVIAGMG 100 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGGCCCEEEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-CccccccEEEEeCCc
Confidence 3589999999999999999985 447999999999999999997432 46999999998764 334469998864332
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 137 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~ 137 (210)
......++.+..+.|+++|+|++...........++. ..+|.+
T Consensus 101 ---------g~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~--~~Gf~i 143 (244)
T 3gnl_A 101 ---------GTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE--QNNWLI 143 (244)
T ss_dssp ---------HHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH--HHTEEE
T ss_pred ---------hHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH--HCCCEE
Confidence 2457888999999999999998877655555544542 335555
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=111.60 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=80.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc------------CCCCcEEEEcccCCC-CCCCCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE------------EIPQLKYLQMDVRDM-SFFEDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~v~~~~~d~~~~-~~~~~~~f 74 (210)
..+|||||||+|.++..+++.+..+++++|+++.+++.|+++.. ..++++++.+|+.+. + . +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~-~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK-N-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH-H-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhc-c-cCCe
Confidence 46899999999999999998866689999999999999998871 236799999998763 3 2 6789
Q ss_pred cEEEECCccchhccCCCchHH--HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+|++....+ . + +... ..++++++.++|||||++++..
T Consensus 154 D~Ii~d~~~~-~--~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDP-V--G--PAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCC-C---------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCC-C--C--cchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865432 1 0 1112 3678999999999999997754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=105.70 Aligned_cols=99 Identities=11% Similarity=0.147 Sum_probs=81.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++.+.. +++++..+|+.+. +++++||+|++.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V~~~- 188 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFLD- 188 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEEC-
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEEEEC-
Confidence 3458999999999999999887 3 458999999999999999987432 5789999999875 456789999973
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. ++...+++++.++|||||.+++.+..
T Consensus 189 ----~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 189 ----V-------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp ----C-------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred ----C-------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 34457899999999999999887753
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.1e-14 Score=109.96 Aligned_cols=110 Identities=9% Similarity=0.135 Sum_probs=74.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC---CCCC---CCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM---SFFE---DESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~---~~~~---~~~fD~ 76 (210)
...+|||+|||+|.++..+++. +..+|+++|+|+.|++.|+++... . .+++++++|+.+. + ++ +++||+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA-LKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT-STTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhh-hhcccCCcccE
Confidence 3458999999999999888875 335899999999999999998743 2 3599999998762 3 44 368999
Q ss_pred EEECCccchhcc--CCCc------hHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMC--GTNA------PISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~--~~~~------~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++..+++... .... ......++.+++++|||||.+.++.
T Consensus 144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 999977765410 0000 0122356778889999999876553
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-14 Score=115.69 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=86.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC--CcEEEEcccCCC-CCC--CCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP--QLKYLQMDVRDM-SFF--EDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~--~v~~~~~d~~~~-~~~--~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.+. .. +++|+++|+.+. +.+ ..++||+|++
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 3458999999999999999987766899999999999999998742 33 899999998773 211 2458999998
Q ss_pred CCccchh--ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 80 KGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~--~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
....... ...........+++.++.++|+|||.+++.+...
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6544211 0111233677788999999999999998877553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-14 Score=109.40 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=81.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCC-----CCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-----EDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~-----~~~~fD 75 (210)
+..+|||||||+|..+..+++. + ..+++++|+++.+++.|+++.+.. ++++++.+|+.+. +.+ .+++||
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 3468999999999999999886 2 458999999999999999987432 4799999998763 212 157899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|++.... .+...+++++.++|||||++++..
T Consensus 159 ~V~~d~~~----------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDADK----------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSCS----------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCch----------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 99986432 456789999999999999997754
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=6.9e-13 Score=102.06 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=88.7
Q ss_pred CCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCC-cccEEEECCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDE-SFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l 83 (210)
.+|||||||+|.++..+++.+ ..+|+++|+++.+++.|+++.+.. .++++..+|+.+. ++.+ .||+|+..++-
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~--l~~~~~~D~IviaG~G 94 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA--FEETDQVSVITIAGMG 94 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh--cccCcCCCEEEEcCCC
Confidence 589999999999999999975 457999999999999999988533 4699999998642 2333 69988864431
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 138 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~ 138 (210)
......++.+..+.|+++|++++...........++. ..+|.+.
T Consensus 95 ---------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~--~~Gf~i~ 138 (225)
T 3kr9_A 95 ---------GRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQ--DHGFQIV 138 (225)
T ss_dssp ---------HHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHH--HTTEEEE
T ss_pred ---------hHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHH--HCCCEEE
Confidence 1447889999999999999998876655554444442 3355553
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=105.44 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=81.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-C-------------C
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-S-------------F 68 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~-------------~ 68 (210)
..+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++... . .++.+.++|+.+. + .
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 468999999999999999987 2 45899999999999999998743 2 3489999998652 1 1
Q ss_pred CCC--CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 69 FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 69 ~~~--~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|++ ++||+|++.... .+...+++++.++|||||++++.+.
T Consensus 141 f~~~~~~fD~I~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADK----------ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TCCSTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccCCCCCcCEEEEeCCH----------HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 233 789999987543 4556889999999999999988653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-14 Score=112.75 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=73.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---CC-CCcEEE--EcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---EI-PQLKYL--QMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~-~~v~~~--~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|.++..+++. .+|+|+|+++ |+..++++.. .. .++.++ ++|+.+++ +++||+|++..
T Consensus 83 g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~Vvsd~ 156 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME---PFQADTVLCDI 156 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC---CCCCSEEEECC
T ss_pred CCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC---CCCcCEEEECC
Confidence 458999999999999999988 4899999999 5433322211 01 178999 99998764 67999999976
Q ss_pred ccchhccCCCchHHH--HHHHHHHHHhccCCc--EEEEEEcC
Q 028385 82 TLDSLMCGTNAPISA--SQMLGEVSRLLKPGG--IYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG--~~~~~~~~ 119 (210)
. ++. +....... ..+++++.++||||| .|++..+.
T Consensus 157 ~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESN--PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCC--SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCC--CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 6 321 00000111 147999999999999 99887766
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=115.48 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=87.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCCCC-CC--CCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMS-FF--EDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~-~~--~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.+.. . +++++++|+.+.. .+ .+++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 44689999999999999999987668999999999999999987432 3 7999999987753 01 25789999986
Q ss_pred CccchhccC--CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~--~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
......... .........++.++.++|||||.+++.+++.
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 543211000 0011567889999999999999998887753
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=109.88 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=83.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++..++..+. .+++|+|+|+.|++.|+++.... +++++.++|+.+++ +++++||+|+++..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QYVDSVDFAISNLP 295 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GTCSCEEEEEEECC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cccCCcCEEEECCC
Confidence 456899999999999999998754 48999999999999999987432 47999999999998 77889999999876
Q ss_pred cchhccCCCchH-HHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~-~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+..-........ ...++++++.++| ||.+++++.
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 543211111122 3478899999999 555555553
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-14 Score=108.40 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||||||+|.++..+++.+..+|+|+|+|+.|++.++++.... .++.+.. ..+ ++...||.+.+..
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~d~~~~D~ 111 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAV--LAD---FEQGRPSFTSIDV 111 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCC--GGG---CCSCCCSEEEECC
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeC--HhH---cCcCCCCEEEEEE
Confidence 34589999999999999999987669999999999999988765321 1222222 111 1122245544443
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++.++ ..++.+++|+|||||.+++..
T Consensus 112 v~~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 112 SFISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp SSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred EhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 33332 678999999999999998863
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-14 Score=111.36 Aligned_cols=103 Identities=8% Similarity=-0.063 Sum_probs=73.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---C-CCcEEE--EcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---I-PQLKYL--QMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~-~~v~~~--~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||+|||+|.++..+++. .+|+|+|+++ |+..++++... . .++.++ ++|+.+++ +++||+|++..
T Consensus 75 g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~V~sd~ 148 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---VERTDVIMCDV 148 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---CCCCSEEEECC
T ss_pred CCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---CCCCcEEEEeC
Confidence 458999999999999999987 5899999998 53322211100 0 178999 89998764 67999999976
Q ss_pred ccchhccCCCchHHH--HHHHHHHHHhccCCc--EEEEEEcC
Q 028385 82 TLDSLMCGTNAPISA--SQMLGEVSRLLKPGG--IYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~--~~~l~~i~r~LkpgG--~~~~~~~~ 119 (210)
. ++. +....... ..++.++.++||||| .|++..+.
T Consensus 149 ~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESS--PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCC--SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccC--CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 6 321 00000111 138999999999999 99887766
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.7e-14 Score=105.15 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---CCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||. +++|+|+.|++.|+++... ++++.++|+.+++ + ++++||+|++..++|
T Consensus 13 g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~-~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 13 GQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLL-QSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp TSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGG-GGCCCSSCEEEEEECCSTT
T ss_pred CCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCc-cccCCCCCEeEEEECChhh
Confidence 35799999986 2399999999999998753 5899999999987 6 789999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+. .+..+++++++|+|||||++++..
T Consensus 75 ~~~------~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 75 STT------LHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CCC------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcc------cCHHHHHHHHHHHCCCCEEEEEEc
Confidence 861 245889999999999999998854
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=118.54 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=86.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCC-CCCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++.+ .. .+++++++|+.+ ++ ...++||+|++...
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~-~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLR-EANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHH-HCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-hcCCCccEEEECCc
Confidence 45899999999999999998877679999999999999999874 22 379999999987 33 34678999998654
Q ss_pred cchhcc----CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~----~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...-.- ......+..+++.++.++|||||.+++.+..
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 211000 0012278889999999999999999876543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-13 Score=101.71 Aligned_cols=102 Identities=15% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CC---------CcEEEEeCCHHHHHHHHHhhcCCCCcEEE-EcccCCCC-------CC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GY---------EDIVNIDISSVAIDMMKMKYEEIPQLKYL-QMDVRDMS-------FF 69 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~---------~~v~~vD~s~~~~~~a~~~~~~~~~v~~~-~~d~~~~~-------~~ 69 (210)
..+|||+|||+|.++..+++. +. .+|+++|+|+.+ ..+++++. .+|+.+.+ .+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRILEVL 93 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHHHhc
Confidence 468999999999999999987 43 589999999831 12578889 88887643 03
Q ss_pred CCCcccEEEECCccchhccCCCchHHH-------HHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISA-------SQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~-------~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++++||+|++...+++... ...+. ..+++++.++|||||.+++..+..+
T Consensus 94 ~~~~fD~V~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (196)
T 2nyu_A 94 PGRRADVILSDMAPNATGF---RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS 149 (196)
T ss_dssp GGGCEEEEEECCCCCCCSC---HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred CCCCCcEEEeCCCCCCCCC---cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 4568999999765443100 00222 5889999999999999998877654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=104.86 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=80.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCC-CC--CCC--CcccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDM-SF--FED--ESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~-~~--~~~--~~fD~V 77 (210)
..+|||+|||+|..+..+++. + ..+++++|+++.+++.|+++.. .. +++++.++|+.+. +. ..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 458999999999999999986 2 3589999999999999998863 22 4689999997552 10 223 789999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++.... .+...+++++.++|||||.+++.+..
T Consensus 153 ~~d~~~----------~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 153 FIDADK----------RNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EECSCG----------GGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EECCCH----------HHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 976542 56788999999999999999886543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=103.61 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=77.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.... ++++++++|+.+.+ ++ +||+|+++..
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~-~~--~fD~vv~nlp 102 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP--FFDTCVANLP 102 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--CCSEEEEECC
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-ch--hhcEEEEecC
Confidence 3446899999999999999999865 8999999999999999987543 57999999999877 54 7999999877
Q ss_pred cchhccCCCchHHHHHHH--------------HHH--HHhccCCcEEE
Q 028385 83 LDSLMCGTNAPISASQML--------------GEV--SRLLKPGGIYM 114 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l--------------~~i--~r~LkpgG~~~ 114 (210)
++.. .+....++ +++ ++++||||.++
T Consensus 103 y~~~------~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 103 YQIS------SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp GGGH------HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred cccc------hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 6653 11222333 223 36899999873
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-13 Score=111.94 Aligned_cols=113 Identities=16% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC-C-CcEEEEcccCCCC-CC--CCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI-P-QLKYLQMDVRDMS-FF--EDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~-~-~v~~~~~d~~~~~-~~--~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.+ .. . +++++++|+.+.. .+ .+++||+|++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 345899999999999999999876689999999999999999874 33 3 7899999998752 01 1468999998
Q ss_pred CCccchhcc--CCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMC--GTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~--~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
........- -.........++.++.++|+|||.+++.+..
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 754311100 0011257789999999999999999887765
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=110.60 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=72.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeC----CHHHHHHHHHhhcCC--CCcEEEEc-ccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDI----SSVAIDMMKMKYEEI--PQLKYLQM-DVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~----s~~~~~~a~~~~~~~--~~v~~~~~-d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+|||+|||+|.++..+++. .+|+++|+ ++.+++.+ ..+.. +++.++++ |+..++ .++||+|++.
T Consensus 83 g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~---~~~fD~V~sd 155 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP---PERCDTLLCD 155 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC---CCCCSEEEEC
T ss_pred CCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC---cCCCCEEEEC
Confidence 458999999999999999987 47999999 55443211 11111 57899998 887654 5689999997
Q ss_pred Cccc---hhccCCCchHHH---HHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLD---SLMCGTNAPISA---SQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~---~~~~~~~~~~~~---~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
..++ +. .+. ..++.++.++|||||.|++..+..
T Consensus 156 ~~~~~g~~~-------~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 156 IGESSPNPT-------VEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCCSSHH-------HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CccccCcch-------hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 6653 22 222 258899999999999998766544
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=111.43 Aligned_cols=110 Identities=10% Similarity=-0.006 Sum_probs=82.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+.. |+++|+|+.+++.|+++.+.. ....+.++|+.+......+.||+|++......-
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 468999999999999999998774 999999999999999987422 123577899877420113349999987543110
Q ss_pred ccCC----CchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 87 MCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 87 ~~~~----~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+. .......+++..+.++|||||.+++.+++.
T Consensus 294 --~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 294 --RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp --SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred --CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 00 012466789999999999999998887764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-13 Score=105.67 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--C-CcEEEEcccCCCCCCCCCcc---cEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESF---DAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~f---D~Vi~~~ 81 (210)
..+|||+|||+|.++..+++.+..+|+++|+|+.+++.|+++.... . +++|+++|+.+. ++ ++| |+|+++.
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~--~~-~~f~~~D~IvsnP 200 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP--FK-EKFASIEMILSNP 200 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG--GG-GGTTTCCEEEECC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh--cc-cccCCCCEEEEcC
Confidence 3589999999999999998874458999999999999999987432 3 599999999873 22 478 9999985
Q ss_pred ccchhcc----C--CCch------HHHHHHHHHHH-HhccCCcEEEEE
Q 028385 82 TLDSLMC----G--TNAP------ISASQMLGEVS-RLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~----~--~~~~------~~~~~~l~~i~-r~LkpgG~~~~~ 116 (210)
.+..... . ..+. .+...+++++. +.|+|||++++.
T Consensus 201 Pyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 201 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 4332100 0 0000 11227899999 999999999764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=105.29 Aligned_cols=102 Identities=10% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCCC----CcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFED----ESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~~----~~fD~ 76 (210)
...+|||+|||+|..+..+++. + ..+++++|+++.+++.|+++.+.. .+++++++|+.+. +.+.. ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 3468999999999999999986 2 458999999999999999887432 5799999998653 11211 68999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|++.... .....+++++.++|||||.+++.+.
T Consensus 149 v~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 149 AVVDADK----------ENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEECSCS----------TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEECCCH----------HHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9986542 4567889999999999999988653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-13 Score=107.91 Aligned_cols=93 Identities=9% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|||||||+|.++..+++.+ .+++++|+++.+++.|+++... .++++++.+|+... . ++||+|++..
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~-~~fD~Ii~d~ 147 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---I-KKYDLIFCLQ 147 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---C-CCEEEEEESS
T ss_pred CCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---H-hhCCEEEECC
Confidence 3689999999999999998886 7999999999999999987643 26799999998764 2 7899999852
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. +...+++++.++|||||++++..
T Consensus 148 ~------------dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 148 E------------PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp C------------CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred C------------ChHHHHHHHHHhcCCCcEEEEEc
Confidence 1 12248999999999999997754
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=112.46 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=85.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CC--CCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FF--EDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~--~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++.+ ...+++++++|+.+.. .+ .+++||+|++...
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP 288 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 288 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence 457999999999999999987 5589999999999999999874 3356999999998753 01 2578999998643
Q ss_pred cchhccC--CCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 83 LDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 83 l~~~~~~--~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.....-. .........++.++.++|+|||.+++.++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2111000 0011567889999999999999998887653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.4e-13 Score=104.26 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=81.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-CCC-----CCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-SFF-----EDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~~~-----~~~~fD 75 (210)
+..+|||||||+|..+..+++. + ..+++++|+++.+++.|+++.+. . ++++++++|+.+. +.+ ..++||
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 3468999999999999999886 3 45899999999999999988743 2 4699999998763 212 257899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|++... ..+...+++++.++|||||++++..
T Consensus 150 ~I~~d~~----------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDAD----------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECSC----------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECCc----------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9997543 2567889999999999999997754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.3e-13 Score=104.81 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=80.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..+++.+..+|+++|+|+.+++.++++.+ +. ++++++++|+.+++ ..+.||.|+......
T Consensus 126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~~~~D~Vi~~~p~~ 203 (278)
T 3k6r_A 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILMGYVVR 203 (278)
T ss_dssp TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEECCCSS
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--cccCCCEEEECCCCc
Confidence 45799999999999999999887799999999999999999874 33 56899999999875 567899999765432
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...++..+.++||+||++.+.++
T Consensus 204 -----------~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 204 -----------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp -----------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----------HHHHHHHHHHHcCCCCEEEEEee
Confidence 23457778899999999876554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=108.77 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCC-CCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF-FEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|..+..+++. +..+++++|+++.+++.++++.+ +..++.+.++|+.+.+. +++++||+|++..
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~ 338 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDA 338 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEEC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcC
Confidence 3458999999999999999885 32589999999999999999874 33689999999988652 4457899999743
Q ss_pred ccchhcc-CCCch--------------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMC-GTNAP--------------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~-~~~~~--------------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....... ...+. ....++++++.++|||||.+++.+++
T Consensus 339 Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 339 PCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 2211100 00000 01267899999999999999988876
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=98.97 Aligned_cols=101 Identities=15% Similarity=-0.024 Sum_probs=81.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||||||+|.++..+. +...|+++|+++.+++.+++.... ..+..+..+|....+ +.++||+|++.-++|+
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--PAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC--CCCBCSEEEEESCHHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC--CCCCcchHHHHHHHHH
Confidence 45689999999999998887 556899999999999999998743 367889999998876 4459999999999998
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ ..... ...-++...|+++|.++...
T Consensus 181 L-----E~q~~-~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 L-----EREQA-GSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp H-----HHHST-THHHHHHHHCBCSEEEEEEE
T ss_pred h-----hhhch-hhHHHHHHHhcCCCEEEEcC
Confidence 8 22222 33448888999999886654
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=101.20 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=83.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||||||+|.++..+... +..+|+++|+++.|++.++++.... .+..+...|...-+ +.+.||+|++.-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCCCcchHHHHHHHHH
Confidence 568999999999999988876 6668999999999999999998432 45788888887654 6788999999999999
Q ss_pred hccCCCchHHH--HHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISA--SQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~--~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+ ++. ...+ ++...|+++|.++....
T Consensus 211 L-------e~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 211 L-------ETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp H-------HHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred h-------hhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 9 443 2444 89999999999976554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=108.29 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=84.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +...|+++|+|+.+++.++++.+ ...++.++++|+.+++...+++||.|++...
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 4468999999999999999886 33589999999999999999874 3468999999998865114678999998432
Q ss_pred c------chhccCC--Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 L------DSLMCGT--NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l------~~~~~~~--~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. ....... ... ....++++++.++|||||+++..+++
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 1 1100000 001 12457899999999999999988775
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=103.84 Aligned_cols=97 Identities=21% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++.. ++ +..+|+++|+|+.+++.++++.+. . ++++++++|+.+.. ++||+|++....
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMNLPK 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEECCTT
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcEEEECCcH
Confidence 446899999999999999 77 566899999999999999998743 2 47999999998753 789999986432
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
. ...++.++.++|+|||.+++.++..
T Consensus 269 ~-----------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 F-----------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp T-----------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred h-----------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 1 2367889999999999998887664
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=98.63 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=81.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC------CcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY------EDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~------~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||+|||+|.++..+++... .+++|+|+++.+++.|+.+... ..++.+.++|.... ...++||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~--~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN--LLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC--CCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc--cccCCccEEEE
Confidence 446899999999999998887521 4799999999999999987631 12688999998763 35678999999
Q ss_pred CCccchhccC----------CCchH-HHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCG----------TNAPI-SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~----------~~~~~-~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+.++... ..+.. ....++.++.+.|||||+++++.
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9887654100 00001 12368999999999999998876
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=99.53 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +|+++|+++.+++.++++.. ..++++++++|+.+.+ + .+||+|+++..++
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-F--PKFDVCTANIPYK 117 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-C--CCCSEEEEECCGG
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC-c--ccCCEEEEcCCcc
Confidence 446899999999999999998754 89999999999999998873 3368999999998876 4 3899999987765
Q ss_pred h
Q 028385 85 S 85 (210)
Q Consensus 85 ~ 85 (210)
.
T Consensus 118 ~ 118 (299)
T 2h1r_A 118 I 118 (299)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=94.50 Aligned_cols=75 Identities=11% Similarity=0.171 Sum_probs=62.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC-CcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-ESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++....++++++++|+.+++ +++ ..| .|+++..++
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSY-KIFGNIPYN 105 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCC-EEEEECCGG
T ss_pred CCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC-cccCCCe-EEEEeCCcc
Confidence 44689999999999999999987 4899999999999999998866578999999999987 664 456 566655543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=108.33 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=84.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+ ...++.+.++|+.+++...+++||+|++...
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaP 184 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAP 184 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCC
Confidence 4468999999999999999875 34589999999999999999874 3367999999988764123578999998543
Q ss_pred cchhcc-CCCch--------------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMC-GTNAP--------------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~-~~~~~--------------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...... ...+. ....+++.++.++|||||.++..+++
T Consensus 185 CSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 185 CSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 211100 00000 12348899999999999999887775
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=107.13 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=83.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|..+..+++. +...|+++|+|+.+++.++++.+ ... +.++++|+.+++.+.+++||+|++...
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCC
Confidence 4468999999999999999875 33589999999999999999874 335 899999988764224678999997433
Q ss_pred cchhc-cCCCc-------h-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLM-CGTNA-------P-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~-~~~~~-------~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..... ....+ . ....++++++.++|||||+++..+++
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 21100 00000 0 12478999999999999999987775
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=100.79 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=67.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||||||+|.++..+++.+. +|+++|+++.+++.++++....++++++++|+.+++ +++.+||+|+++..++.
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~-~~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVD-LNKLDFNKVVANLPYQI 126 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSC-GGGSCCSEEEEECCGGG
T ss_pred CcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCC-cccCCccEEEEeCcccc
Confidence 446899999999999999999854 899999999999999998865578999999999988 77788999999877653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=103.72 Aligned_cols=113 Identities=15% Similarity=0.137 Sum_probs=83.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC-CCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-FEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~-~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++.+.. .++.+.++|+.+.+. +++++||+|++....
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 325 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPC 325 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECCC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeCCC
Confidence 34589999999999999999863 258999999999999999987432 357899999987641 345789999974332
Q ss_pred chhcc-CCCch--------------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMC-GTNAP--------------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~-~~~~~--------------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..... ...+. ....++++++.++|||||++++.+++
T Consensus 326 sg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 326 SATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp CCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred CcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11100 00010 12358899999999999999998865
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-13 Score=104.29 Aligned_cols=101 Identities=12% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC-CcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++....++++++++|+.+++ +++ ++| .|+++..++.
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~f-~vv~n~Py~~ 105 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRY-KIVGNIPYHL 105 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEE-EEEEECCSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC-cccCCCc-EEEEeCCccc
Confidence 44589999999999999999887 5899999999999999887764468999999999987 664 689 6777654332
Q ss_pred hccCCCchHHHHHH----------H----HHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQM----------L----GEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~----------l----~~i~r~LkpgG~~~~~ 116 (210)
. ......+ + +.+.|+|||||.+.+.
T Consensus 106 ~------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 106 S------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp C------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred c------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 1 1112222 2 6689999999987654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-11 Score=99.54 Aligned_cols=97 Identities=7% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC----CCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM----SFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++.+ ...+++|+++|+.+. + +.+++||+|+++
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~-~~~~~fD~Vv~d 363 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP-WAKNGFDKVLLD 363 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG-GGTTCCSEEEEC
T ss_pred CCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh-hhcCCCCEEEEC
Confidence 44689999999999999999884 489999999999999999874 336899999999882 3 456789999986
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...... ..+++.+.+ ++|++.+++.
T Consensus 364 PPr~g~----------~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 364 PARAGA----------AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp CCTTCC----------HHHHHHHHH-HCCSEEEEEE
T ss_pred CCCccH----------HHHHHHHHh-cCCCeEEEEE
Confidence 543322 245555544 6888877654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=99.08 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.+ +.. ++|+++|+.+.. +. +||+|++.....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~--~~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS--VK-GFDTVIVDPPRA 364 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC--CT-TCSEEEECCCTT
T ss_pred CCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC--cc-CCCEEEEcCCcc
Confidence 346899999999999999998754 89999999999999998874 334 899999998864 22 899999865432
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. ...+++.+. .|+|||.+++..
T Consensus 365 g~---------~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 365 GL---------HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp CS---------CHHHHHHHH-HHCCSEEEEEES
T ss_pred ch---------HHHHHHHHH-hcCCCcEEEEEC
Confidence 11 123445454 489999987653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=95.82 Aligned_cols=99 Identities=12% Similarity=-0.015 Sum_probs=69.8
Q ss_pred CCCCEEEeCCCC------chhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCcEE-EEcccCCCCCCCCCcccEE
Q 028385 7 GTRDTCRRAAPS------IVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKY-LQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~------G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~-~~~d~~~~~~~~~~~fD~V 77 (210)
...+|||+|||+ |. ..+++. + ..+|+|+|+|+. . +++++ +++|+.+.+ ++ ++||+|
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~-~~-~~fD~V 127 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVH-TA-NKWDLI 127 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCC-CS-SCEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCC-cc-CcccEE
Confidence 345899999955 66 333333 3 358999999987 1 47889 999999876 54 689999
Q ss_pred EECCccchh----ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 78 IDKGTLDSL----MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 78 i~~~~l~~~----~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+++...+.. ............+++++.++|||||.|++..+..
T Consensus 128 vsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 128 ISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp EECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred EEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 997542211 0111122446789999999999999999866543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=101.60 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||+|||+|.++..+++. +..+++|+|+++.+++.| .+++++++|+.+.. +.++||+|+++..+..
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~~--~~~~fD~Ii~NPPy~~ 110 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--PGEAFDLILGNPPYGI 110 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--CSSCEEEEEECCCCCC
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhcC--ccCCCCEEEECcCccC
Confidence 458999999999999999875 445899999999998766 46899999998865 4578999999765532
Q ss_pred hccCC-----CchH-----------------HHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGT-----NAPI-----------------SASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~-----~~~~-----------------~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..... .... ....+++.+.++|+|||.++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 111 VGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp BSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 21100 0011 123679999999999999988763
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=96.04 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=83.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDMM 46 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~~~~a 46 (210)
.+..+|||++||+|.++..++..+. .+|+|+|+++.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4457899999999999988876521 3699999999999999
Q ss_pred HHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccC--CcEEEEEEcC
Q 028385 47 KMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYG 119 (210)
Q Consensus 47 ~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp--gG~~~~~~~~ 119 (210)
+++... . .+++|.++|+.+++ . .++||+|+++..+..- .....+...+.+++.+.||+ ||.+++++-.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~-~-~~~~D~Iv~NPPyg~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFK-S-EDEFGFIITNPPYGER---LEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCC-C-SCBSCEEEECCCCCCS---HHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHHHHcCCCCceEEEECChhhcC-c-CCCCcEEEECCCCcCc---cCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 998742 2 37999999999987 4 4589999998765321 01124567778888888877 8888877643
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-11 Score=93.28 Aligned_cols=74 Identities=12% Similarity=0.265 Sum_probs=62.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC----CCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE----DESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~----~~~fD~Vi~~~~ 82 (210)
...+|||||||+|.++..+++.+ .+|+++|+++.|++.++++....++++++++|+.+++ ++ +++|| |+++..
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFD-FSSVKTDKPLR-VVGNLP 105 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCC-GGGSCCSSCEE-EEEECC
T ss_pred CcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCC-HHHhccCCCeE-EEecCC
Confidence 34589999999999999999887 4899999999999999999876678999999999986 43 35788 666655
Q ss_pred c
Q 028385 83 L 83 (210)
Q Consensus 83 l 83 (210)
+
T Consensus 106 Y 106 (255)
T 3tqs_A 106 Y 106 (255)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-10 Score=94.48 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=81.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDMM 46 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~~~~a 46 (210)
.+...|||.+||+|.++...+..+. .+|+|+|+++.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 3456899999999999988876421 2599999999999999
Q ss_pred HHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccC--CcEEEEEEcC
Q 028385 47 KMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYG 119 (210)
Q Consensus 47 ~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp--gG~~~~~~~~ 119 (210)
+++... . .++++.++|+.+++ . .++||+|+++..+..- .........+.+++.+.||+ ||.+++++-.
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~-~-~~~fD~Iv~NPPYg~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 352 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQ-T-EDEYGVVVANPPYGER---LEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY 352 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCC-C-CCCSCEEEECCCCCCS---HHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred HHHHHHcCCCCceEEEECChHhCC-C-CCCCCEEEECCCCccc---cCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998743 2 35999999999987 4 4589999998654211 00124556667777777776 8888887743
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-10 Score=93.14 Aligned_cols=109 Identities=13% Similarity=0.137 Sum_probs=83.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDMM 46 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~~~~a 46 (210)
.+...|||.+||+|.++...+..+. .+++|+|+++.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 3456899999999999988876421 2599999999999999
Q ss_pred HHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccC--CcEEEEEEcC
Q 028385 47 KMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYG 119 (210)
Q Consensus 47 ~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp--gG~~~~~~~~ 119 (210)
+++... . .++++.++|+.+++ .+ ++||+|+++..+..- .....+...+.+++.+.||+ ||.+++++..
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~-~~-~~fD~Iv~NPPYG~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 345 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFK-TN-KINGVLISNPPYGER---LLDDKAVDILYNEMGETFAPLKTWSQFILTND 345 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCC-CC-CCSCEEEECCCCTTT---TSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred HHHHHHcCCCCceEEEECChHHCC-cc-CCcCEEEECCchhhc---cCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence 998743 2 35999999999987 44 589999998665321 12335677788888888876 9988888743
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=92.39 Aligned_cols=72 Identities=6% Similarity=0.058 Sum_probs=63.3
Q ss_pred CEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC-cccEEEECCccc
Q 028385 10 DTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTLD 84 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l~ 84 (210)
+|||||||+|.++..+++.+. +|+++|+++.|++.++++... .+++++++|+.+++ +++. .+|.|+++..++
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~-~~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYP-WEEVPQGSLLVANLPYH 121 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSC-GGGSCTTEEEEEEECSS
T ss_pred eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCC-hhhccCccEEEecCccc
Confidence 899999999999999999874 899999999999999998864 68999999999987 5542 689999987654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=96.58 Aligned_cols=98 Identities=7% Similarity=0.138 Sum_probs=75.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCC--------------
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFED-------------- 71 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~-------------- 71 (210)
.+|||+|||+|.++..+++.. .+|+++|+|+.+++.|+++.+ +..+++|+++|+.+.. .+..
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~-~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~ 293 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF-DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 293 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS-SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred CEEEEccCCCCHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence 579999999999999888754 489999999999999998874 3368999999987642 0111
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
++||+|+....-. .+..++.+.|+++|.++.++++.
T Consensus 294 ~~fD~Vv~dPPr~-------------g~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 294 YQCETIFVDPPRS-------------GLDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CCEEEEEECCCTT-------------CCCHHHHHHHTTSSEEEEEESCH
T ss_pred CCCCEEEECcCcc-------------ccHHHHHHHHhCCCEEEEEECCH
Confidence 3799999754322 12455677778999998888763
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=98.38 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------------CCCcEEEEeCCHHHHHHHHHhhc--CCC--CcEEEEcccCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------------GYEDIVNIDISSVAIDMMKMKYE--EIP--QLKYLQMDVRDMSF 68 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------------~~~~v~~vD~s~~~~~~a~~~~~--~~~--~v~~~~~d~~~~~~ 68 (210)
...+|||.|||+|.++..+++. ...+++|+|+++.+++.|+.+.. ... ++++.++|....+
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~- 249 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE- 249 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc-
Confidence 3468999999999999888763 22479999999999999998762 322 6789999988766
Q ss_pred CCCCcccEEEECCccchhccCCC----------chHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTN----------APISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~----------~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .++||+|+++..+........ .......+++++.++|||||++.++.
T Consensus 250 ~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 250 P-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp C-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 3 348999999987765321110 01123578999999999999998876
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=96.74 Aligned_cols=99 Identities=15% Similarity=0.044 Sum_probs=77.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------------CCCCcEEEEcccCCCCCC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------------EIPQLKYLQMDVRDMSFF 69 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-----------------~~~~v~~~~~d~~~~~~~ 69 (210)
..+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+ +..+++++++|+.+....
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 458999999999999999987 55589999999999999998873 223589999998775311
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+.||+|+.... .....+++.+.+.||+||.++++.
T Consensus 128 ~~~~fD~I~lDP~-----------~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDPF-----------GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECCS-----------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCCC-----------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 2457999996421 122577888999999999876654
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-09 Score=87.02 Aligned_cols=111 Identities=8% Similarity=-0.040 Sum_probs=79.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCC---CcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFED---ESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~---~~fD~Vi~ 79 (210)
...+|||+|||+|..+..+++. +..+|+++|+++.+++.++++.+. ..++.++++|+.+++ ... ++||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~-~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS-PSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC-TTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC-ccccccCCCCEEEE
Confidence 3458999999999999999875 445899999999999999998853 368999999998875 322 57999997
Q ss_pred CCccchhccC-C------------Cch----HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCG-T------------NAP----ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~-~------------~~~----~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.......... . ... ....++++++.++|+ ||+++..+++
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 5332111000 0 000 123457888888887 9998877765
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=93.85 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc--CCCC--cEEEEcccCCCCC-CCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE--EIPQ--LKYLQMDVRDMSF-FEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~--~~~~--v~~~~~d~~~~~~-~~~~~fD~Vi~~ 80 (210)
..+|||++||+|.++..++.. +..+|+++|+++.+++.++++.+ +..+ ++++++|+.+... ...+.||+|+..
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 468999999999999999985 44689999999999999999885 3344 8999999876421 114579999976
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . .....++..+.+.|++||++++..
T Consensus 133 P-~----------g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P-F----------GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C-S----------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-C----------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 1 112457888999999999876654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.1e-09 Score=93.70 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=76.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-------------------------------------------CCcEEEEeCCHHHH
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-------------------------------------------YEDIVNIDISSVAI 43 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-------------------------------------------~~~v~~vD~s~~~~ 43 (210)
+...|||.+||+|.++...+..+ ...++|+|+++.|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45689999999999998877531 13799999999999
Q ss_pred HHHHHhhcC--C-CCcEEEEcccCCCC-CCCCCcccEEEECCccchhccCCCchHHHHHH---HHHHHHhccCCcEEEEE
Q 028385 44 DMMKMKYEE--I-PQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLMCGTNAPISASQM---LGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 44 ~~a~~~~~~--~-~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~---l~~i~r~LkpgG~~~~~ 116 (210)
+.|+++... . ..++|.++|+.++. ....++||+|+++..+..-. ....+...+ +.++.+.+.|||.++++
T Consensus 270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rl---g~~~~l~~ly~~l~~~lk~~~~g~~~~il 346 (703)
T 3v97_A 270 QRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERL---DSEPALIALHSLLGRIMKNQFGGWNLSLF 346 (703)
T ss_dssp HHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccc---cchhHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 999998743 2 34899999999874 13344899999986643210 112334444 44555555689999888
Q ss_pred E
Q 028385 117 T 117 (210)
Q Consensus 117 ~ 117 (210)
+
T Consensus 347 t 347 (703)
T 3v97_A 347 S 347 (703)
T ss_dssp E
T ss_pred e
Confidence 6
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=83.49 Aligned_cols=73 Identities=8% Similarity=0.133 Sum_probs=59.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC--cccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE--SFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~--~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++.+..+|+++|+++.+++.++++ ...+++++++|+.+++ +++. .| .|+++..+
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~~-~~~~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKFP-FCSLGKEL-KVVGNLPY 105 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTCC-GGGSCSSE-EEEEECCT
T ss_pred CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhCC-hhHccCCc-EEEEECch
Confidence 4468999999999999999998656999999999999999887 3468999999999987 5432 33 66665554
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.6e-10 Score=86.72 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=58.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCc--EEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC-----CcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-----ESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-----~~fD~Vi~ 79 (210)
...+|||||||+|.++. +.+ + .+ |+++|+++.|++.++++....++++++++|+.+++ +++ +..|.|++
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~-~~~~~~~~~~~~~vvs 96 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN-FGELAEKMGQPLRVFG 96 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC-HHHHHHHHTSCEEEEE
T ss_pred CcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCC-HHHhhcccCCceEEEE
Confidence 44689999999999999 654 3 36 99999999999999988765568999999999876 432 23468888
Q ss_pred CCccc
Q 028385 80 KGTLD 84 (210)
Q Consensus 80 ~~~l~ 84 (210)
+..+.
T Consensus 97 NlPY~ 101 (252)
T 1qyr_A 97 NLPYN 101 (252)
T ss_dssp ECCTT
T ss_pred CCCCC
Confidence 76643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-10 Score=89.01 Aligned_cols=77 Identities=9% Similarity=-0.049 Sum_probs=61.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCH-------HHHHHHHHhhcC--C-CCcEEEEcccCCC-CCCCC--Ccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISS-------VAIDMMKMKYEE--I-PQLKYLQMDVRDM-SFFED--ESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~-------~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~~~~~--~~f 74 (210)
..+|||+|||+|..+..+++.+. +|+++|+++ .+++.|+++.+. . .+++++++|+.+. +.+++ ++|
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f 162 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred cCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence 46899999999999999999865 899999999 999999876532 2 3499999999874 21334 789
Q ss_pred cEEEECCccch
Q 028385 75 DAVIDKGTLDS 85 (210)
Q Consensus 75 D~Vi~~~~l~~ 85 (210)
|+|++..++.+
T Consensus 163 D~V~~dP~~~~ 173 (258)
T 2r6z_A 163 DIVYLDPMYPE 173 (258)
T ss_dssp SEEEECCCC--
T ss_pred cEEEECCCCCC
Confidence 99999877655
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=85.75 Aligned_cols=74 Identities=7% Similarity=0.022 Sum_probs=58.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCC---cEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC------cccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYE---DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE------SFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~------~fD~V 77 (210)
...+|||||||+|.++..+++.+.. +|+++|+++.|++.++++. .++++++++|+.+++ +++- ..+.|
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~~~-~~~~~~~~~~~~~~v 118 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALTFD-FGSIARPGDEPSLRI 118 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGGCC-GGGGSCSSSSCCEEE
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhcCC-hhHhcccccCCceEE
Confidence 3468999999999999999987542 2999999999999999884 468999999999987 4321 23467
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+++..+
T Consensus 119 v~NlPY 124 (279)
T 3uzu_A 119 IGNLPY 124 (279)
T ss_dssp EEECCH
T ss_pred EEccCc
Confidence 766554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=83.47 Aligned_cols=115 Identities=13% Similarity=-0.033 Sum_probs=79.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc------------------CCCcEEEEeCC-----------HHHHHHHHHhhcCCCCcEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD------------------GYEDIVNIDIS-----------SVAIDMMKMKYEEIPQLKY 58 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~------------------~~~~v~~vD~s-----------~~~~~~a~~~~~~~~~v~~ 58 (210)
..+|+|+||++|.++..+... +.-+|+..|.. +.+.+.+++......+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999887653 11257888887 6666555443322123456
Q ss_pred EEcccCCCC--CCCCCcccEEEECCccchhccCCCc--------------------------------hHHHHHHHHHHH
Q 028385 59 LQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNA--------------------------------PISASQMLGEVS 104 (210)
Q Consensus 59 ~~~d~~~~~--~~~~~~fD~Vi~~~~l~~~~~~~~~--------------------------------~~~~~~~l~~i~ 104 (210)
+.+...++- -|++++||+|+++.+|||+.-.... ..+...+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655531 2889999999999999997422111 123344588889
Q ss_pred HhccCCcEEEEEEcCCch
Q 028385 105 RLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 105 r~LkpgG~~~~~~~~~p~ 122 (210)
+.|+|||++++...+.+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELISRGRMLLTFICKED 230 (384)
T ss_dssp HHEEEEEEEEEEEECCCT
T ss_pred HHhccCCeEEEEEecCCC
Confidence 999999999998877654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=80.99 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=81.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
..+||-||.|.|..+..++++ +..+++.+|+++.+++.+++... +-++++++.+|+...-.-..++||+|+.
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~ 163 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS 163 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence 468999999999999999987 45689999999999999998752 1278999999998853245678999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
... +....+ ..---...++.+++.|+|||+++..
T Consensus 164 D~~-dp~~~~--~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 164 DCT-DPIGPG--ESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp SCC-CCCCTT--CCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred eCC-CcCCCc--hhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 532 111000 0011246789999999999999764
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=92.77 Aligned_cols=111 Identities=9% Similarity=-0.016 Sum_probs=80.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc----C---------------CCcEEEEeCCHHHHHHHHHhhc--CCCC-----cEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD----G---------------YEDIVNIDISSVAIDMMKMKYE--EIPQ-----LKYLQ 60 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~----~---------------~~~v~~vD~s~~~~~~a~~~~~--~~~~-----v~~~~ 60 (210)
...+|||.+||+|.++..+++. . ...++|+|+++.+++.|+.+.. ...+ ..+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 3468999999999999877653 1 1369999999999999998763 2233 78899
Q ss_pred cccCCCCCCCCCcccEEEECCccchhccCC-------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 61 MDVRDMSFFEDESFDAVIDKGTLDSLMCGT-------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 61 ~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~-------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|....+....++||+|+++..+....... ........++.++.+.|||||++.++.
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 998664313457899999987765431110 001223478999999999999988876
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-10 Score=91.94 Aligned_cols=75 Identities=7% Similarity=-0.025 Sum_probs=61.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc----CCCCcEEEEcccCCC-CCCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE----EIPQLKYLQMDVRDM-SFFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~ 82 (210)
..+|||+|||+|..+..+++.+. +|+++|+|+.+++.|+++.+ +..+++++++|+.+. +.+.+++||+|++...
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDPP 172 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECCE
T ss_pred CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECCC
Confidence 46899999999999999988765 89999999999999999875 336899999999874 3112458999998654
Q ss_pred c
Q 028385 83 L 83 (210)
Q Consensus 83 l 83 (210)
.
T Consensus 173 r 173 (410)
T 3ll7_A 173 R 173 (410)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=92.88 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCEEEeCCCCchhHHHHHHc---CCC--cEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD---GYE--DIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~---~~~--~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..|||+|||+|.++...++. +.. +|++||-|+.+.. +++..+ +. +.|+++.+|++++. .| +++|+||+-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~-a~~~v~~N~~~dkVtVI~gd~eev~-LP-EKVDIIVSE 435 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVV-TLENWQFEEWGSQVTVVSSDMREWV-AP-EKADIIVSE 435 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHH-HHHHHHHHTTGGGEEEEESCTTTCC-CS-SCEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHH-HHHHHHhccCCCeEEEEeCcceecc-CC-cccCEEEEE
Confidence 46999999999996555443 332 6899999986554 444432 22 67999999999987 54 689999983
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
. +..++.. +....++....|.|||||.+
T Consensus 436 w-MG~fLl~----E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 436 L-LGSFADN----ELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp C-CBTTBGG----GCHHHHHHHHGGGEEEEEEE
T ss_pred c-Ccccccc----cCCHHHHHHHHHhcCCCcEE
Confidence 2 2222222 22346888899999999986
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-09 Score=83.15 Aligned_cols=108 Identities=6% Similarity=-0.068 Sum_probs=70.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.|+..+++. +...+.++|++..+............++.....++.... +.++.||+|++....+
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~DlVlsD~apn-- 151 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHR-LEPVKCDTLLCDIGES-- 151 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEECCCCC--
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehh-cCCCCccEEEecCccC--
Confidence 347999999999999988775 555788999885431000000000025566667665555 7788999999987554
Q ss_pred ccCCCchHHH--HHHHHHHHHhccCC-cEEEEEEcC
Q 028385 87 MCGTNAPISA--SQMLGEVSRLLKPG-GIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~--~~~l~~i~r~Lkpg-G~~~~~~~~ 119 (210)
.|....+.. ..+++.+.++|||| |.|++-.|.
T Consensus 152 -sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 152 -SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred -cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 111111221 23578899999999 999886665
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-09 Score=85.46 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=61.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC----CCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----FEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~----~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+|+++|+|+.|++.|+++.... .+++++++|+.+++. ...++||.|++.
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence 3468999999999999999987 3458999999999999999988543 689999999988641 112589999874
Q ss_pred C
Q 028385 81 G 81 (210)
Q Consensus 81 ~ 81 (210)
.
T Consensus 106 ~ 106 (301)
T 1m6y_A 106 L 106 (301)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-08 Score=83.16 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=77.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc----------------CCCcEEEEeCCHHHHHHHHHhhcCC--------------CCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD----------------GYEDIVNIDISSVAIDMMKMKYEEI--------------PQL 56 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~----------------~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~v 56 (210)
...+|+|+|||+|.++..+... +.-+|..-|...+.-...=+..... .+-
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3578999999999999887321 2236888887766544333332210 011
Q ss_pred EEEEcccCC---CCCCCCCcccEEEECCccchhccCCC-------------------------------chHHHHHHHHH
Q 028385 57 KYLQMDVRD---MSFFEDESFDAVIDKGTLDSLMCGTN-------------------------------APISASQMLGE 102 (210)
Q Consensus 57 ~~~~~d~~~---~~~~~~~~fD~Vi~~~~l~~~~~~~~-------------------------------~~~~~~~~l~~ 102 (210)
.|..+...+ -. ||+++||+|+++.+|||+.-... ...+...+|+.
T Consensus 132 ~f~~gvpgSFy~rl-fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 132 YFVAGVPGSFYRRL-FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp SEEEEEESCTTSCC-SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhccc-CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 244444333 23 88999999999999999841110 01266778999
Q ss_pred HHHhccCCcEEEEEEcCCch
Q 028385 103 VSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 103 i~r~LkpgG~~~~~~~~~p~ 122 (210)
.++.|+|||++++...+.+.
T Consensus 211 ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCC
T ss_pred HHHHhCCCCEEEEEEecCCC
Confidence 99999999999988876543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-09 Score=92.28 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=72.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc----C----------CCcEEEEeCCHHHHHHHHHhhc-CC-CCcEEEEcccCCCCCCC-
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----G----------YEDIVNIDISSVAIDMMKMKYE-EI-PQLKYLQMDVRDMSFFE- 70 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~----------~~~v~~vD~s~~~~~~a~~~~~-~~-~~v~~~~~d~~~~~~~~- 70 (210)
...|||+|||+|.++...++. + ..+|++||.|+.++...+.+.. .. +.|+++.+|++++. .+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~-lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLP-GIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHH-HHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcc-ccc
Confidence 346999999999997543221 1 2389999999988766665543 33 56999999999986 53
Q ss_pred ----CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 71 ----DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 71 ----~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
.++.|+||+-.. ..++ ..+-...++..+.|.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElm-Gsfl----~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-GSFG----DNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-BTTB----GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-cccc----chhccHHHHHHHHHhCCCCcEEE
Confidence 578999998433 1111 11345668888899999999763
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-08 Score=73.39 Aligned_cols=96 Identities=7% Similarity=-0.084 Sum_probs=69.5
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCC---------------C
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDM---------------S 67 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~---------------~ 67 (210)
..+|||+||| ..+..+++....+|+.+|.+++..+.|++..+. ..+++++.+|+... +
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 4579999985 566666665345899999999999999988743 34799999996542 1
Q ss_pred C-------C-CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 68 F-------F-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 68 ~-------~-~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . ..++||+|+..+- .....+..+.+.|+|||++++-.
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~------------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR------------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS------------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHhhhhhccccCCCCCEEEEeCC------------CchhHHHHHHHhcCCCeEEEEeC
Confidence 0 1 2378999996542 11355666779999999996544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.3e-08 Score=83.16 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=81.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhh--cCC--CCcEEEEcccCCC--CCCCCCcccE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKY--EEI--PQLKYLQMDVRDM--SFFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~--~~~--~~v~~~~~d~~~~--~~~~~~~fD~ 76 (210)
...+|||.+||+|.+...+++. +..+++|+|+++.++..|+.+. .+. +++.+.++|.... +......||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 4568999999999998888765 2457999999999999999875 233 4678999998765 3245678999
Q ss_pred EEECCccchhc--------------cC-CCchH-HHHHHHHHHHHhcc-CCcEEEEEE
Q 028385 77 VIDKGTLDSLM--------------CG-TNAPI-SASQMLGEVSRLLK-PGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~--------------~~-~~~~~-~~~~~l~~i~r~Lk-pgG~~~~~~ 117 (210)
|+++..+..-. ++ ..+.. .--..+.++.+.|| +||++.++.
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 99987664210 01 00000 11258999999999 999988776
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.72 E-value=7e-09 Score=81.38 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=63.9
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---------C-C-CCcEEEEcccCCC-CCCCCCcccE
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------E-I-PQLKYLQMDVRDM-SFFEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~-~-~~v~~~~~d~~~~-~~~~~~~fD~ 76 (210)
.+|||+|||+|..+..++..+. +|+++|.++.+...+++..+ + . .+++++++|+.++ +.++ ++||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~-~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS-SCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCc-ccCCE
Confidence 6899999999999999999876 89999999987666554431 1 1 4689999999873 3233 47999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 111 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG 111 (210)
|+....+.+- . ...++++..++|++.+
T Consensus 168 V~lDP~y~~~-----~---~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 168 VYLDPMFPHK-----Q---KSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEECCCCCCC-----C---C-----HHHHHHHHHS
T ss_pred EEEcCCCCCc-----c---cchHHHHHHHHHHHhh
Confidence 9988766442 1 1144455555555544
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.5e-08 Score=79.33 Aligned_cols=109 Identities=18% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----------CCcEEEEcccCCCC-C--CCCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----------PQLKYLQMDVRDMS-F--FEDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~v~~~~~d~~~~~-~--~~~~~f 74 (210)
..+||-||.|.|..+..+++++..+++.+|+++.+++.+++..... ++++++..|+...- . -..++|
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~y 285 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREF 285 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCce
Confidence 3589999999999999999987778999999999999999876321 45889999987631 0 134689
Q ss_pred cEEEECCccchhcc---CCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 75 DAVIDKGTLDSLMC---GTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 75 D~Vi~~~~l~~~~~---~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
|+|+....-..... +.....-.+++++.+++.|+|||+++..
T Consensus 286 DvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 286 DYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 99997432110000 0001112357789999999999999653
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-08 Score=78.43 Aligned_cols=115 Identities=11% Similarity=-0.002 Sum_probs=84.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-----------------CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-----------------GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD- 65 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~- 65 (210)
...+|+|+||++|.++..+... +.-+|+..|...+.....-+..... .+-.|+.+...+
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4578999999999888665432 1136889999988888777766431 123566665555
Q ss_pred --CCCCCCCcccEEEECCccchhccCC--------------------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 66 --MSFFEDESFDAVIDKGTLDSLMCGT--------------------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 66 --~~~~~~~~fD~Vi~~~~l~~~~~~~--------------------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-. |+++++|+|+++.+|||+.-.. ....+...+|+..++.|+|||++++..
T Consensus 131 y~rl-fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRL-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCC-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhcc-CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34 8999999999999999974211 013467788999999999999999888
Q ss_pred cCCch
Q 028385 118 YGDPK 122 (210)
Q Consensus 118 ~~~p~ 122 (210)
.+.+.
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76544
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=82.90 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=75.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC----CCcEEEEeCCHHHHHHH--HHhhcC------CCCcEEEEcccCCCCCCCCCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG----YEDIVNIDISSVAIDMM--KMKYEE------IPQLKYLQMDVRDMSFFEDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~----~~~v~~vD~s~~~~~~a--~~~~~~------~~~v~~~~~d~~~~~~~~~~~f 74 (210)
...+|||.|||+|.++..+++.. ..+++|+|+++.+++.| +.+... .....+...|+........+.|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 35689999999999999988752 24799999999999999 443321 1223566666655321345789
Q ss_pred cEEEECCccchhccC----------------------CCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMCG----------------------TNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~----------------------~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+|+++..+-..... .........++..+.+.||+||++.++.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999776210000 0000123457889999999999998876
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-07 Score=82.33 Aligned_cols=109 Identities=13% Similarity=-0.044 Sum_probs=76.6
Q ss_pred CCEEEeCCCCchhHHHHHHc--------C--------CCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKD--------G--------YEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFF 69 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~--------~--------~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~ 69 (210)
.+|||.+||+|.+...+++. . ...++|+|+++.++..|+.+.. .. .++.+.++|....+.+
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 38999999999998776532 1 2379999999999999998762 22 2344477886655435
Q ss_pred CCCcccEEEECCccchhc-------------cC--------CCchH-HHHHHHHHHHHhccCCcEEEEEE
Q 028385 70 EDESFDAVIDKGTLDSLM-------------CG--------TNAPI-SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~-------------~~--------~~~~~-~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+.+||+|+++..+..-. ++ ..+.. .--..+.++.+.|||||++.++.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 678999999987764310 11 00011 11268999999999999988776
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-08 Score=78.08 Aligned_cols=108 Identities=9% Similarity=-0.065 Sum_probs=68.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.|+..+++. +...++|+|++..+...+........++.....++.... ++.+.+|+|+|....+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~DvVLSDmApn-- 167 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIPGDTLLCDIGES-- 167 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCCCSEEEECCCCC--
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCCcCEEEecCccC--
Confidence 347999999999999987754 666799999986532211110000123334443333334 5678999999987654
Q ss_pred ccCCCchHH--HHHHHHHHHHhccCC--cEEEEEEcC
Q 028385 87 MCGTNAPIS--ASQMLGEVSRLLKPG--GIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~--~~~~l~~i~r~Lkpg--G~~~~~~~~ 119 (210)
.|....+. ...+++-+.++|||| |.|++-.|.
T Consensus 168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 12111122 223577788999999 999887666
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-07 Score=73.86 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred CCCCEEEeCCCCchhHHHHHH--------cC-----CCcEEEEeCCH---HHHH-----------HHHHhhcC-------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK--------DG-----YEDIVNIDISS---VAID-----------MMKMKYEE------- 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~--------~~-----~~~v~~vD~s~---~~~~-----------~a~~~~~~------- 52 (210)
...+|||+|+|+|..+..+++ .+ ..+++++|..| +++. .+++..+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 346899999999998877654 22 13799999876 5444 34443221
Q ss_pred ---------CCCcEEEEcccCC-CCCCCC---CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 53 ---------IPQLKYLQMDVRD-MSFFED---ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 53 ---------~~~v~~~~~d~~~-~~~~~~---~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..++++..+|+.+ ++..++ ..||+|+.... .....+.-=...+++.+.++|||||.++ +|+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~f----sp~~~p~lw~~~~l~~l~~~L~pGG~l~--tys 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGF----APAKNPDMWTQNLFNAMARLARPGGTLA--TFT 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSS----CTTTCGGGCCHHHHHHHHHHEEEEEEEE--ESC
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCC----CcccChhhcCHHHHHHHHHHcCCCcEEE--EEe
Confidence 1357789999887 442222 37999996421 1111111114678999999999999986 455
Q ss_pred Cchh
Q 028385 120 DPKA 123 (210)
Q Consensus 120 ~p~~ 123 (210)
....
T Consensus 214 aa~~ 217 (257)
T 2qy6_A 214 SAGF 217 (257)
T ss_dssp CBHH
T ss_pred CCHH
Confidence 4443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=66.92 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCCEEEeCCCCc-hhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCC--CcccEEEECCcc
Q 028385 8 TRDTCRRAAPSI-VMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED--ESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~--~~fD~Vi~~~~l 83 (210)
..+|||||||+| ..+..|++ .+. +|+++|+++.+++ +++.|+.+.. .+ +.||+|.+..
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~-------------~v~dDiF~P~--~~~Y~~~DLIYsir-- 97 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG-------------IVRDDITSPR--MEIYRGAALIYSIR-- 97 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT-------------EECCCSSSCC--HHHHTTEEEEEEES--
T ss_pred CCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc-------------eEEccCCCCc--ccccCCcCEEEEcC--
Confidence 469999999999 69999997 666 8999999986544 7888887732 22 4799998743
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+..+++..+-++.+. -|.-+++..++.
T Consensus 98 --------PP~El~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 98 --------PPAEIHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp --------CCTTTHHHHHHHHHH--HTCEEEEECBTT
T ss_pred --------CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 235566667777664 467787776654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.2e-07 Score=71.05 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=77.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc------CCCcEEEEeCCHH--------------------------HHHHHHHhhcC--
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD------GYEDIVNIDISSV--------------------------AIDMMKMKYEE-- 52 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~------~~~~v~~vD~s~~--------------------------~~~~a~~~~~~-- 52 (210)
..++|||+|+..|..+..++.. ...+++++|..+. .++.++++++.
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 3568999999999988887642 2458999996421 35566766642
Q ss_pred C--CCcEEEEcccCC-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 53 I--PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 53 ~--~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. ++++++.+|+.+ ++.+++++||+|+..... . ......++.+...|+|||++++-++.
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y-------~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y-------ESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H-------HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c-------ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 2 679999999977 454556789999975432 2 45678899999999999999877663
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=70.22 Aligned_cols=95 Identities=11% Similarity=0.036 Sum_probs=67.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
...++||+||++|.|+..+++++. .|++||+.+-. ......++|++.++|+.... .+.+.||+|+|.....
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-----~~l~~~~~V~~~~~d~~~~~-~~~~~~D~vvsDm~~~-- 281 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-----QSLMDTGQVTWLREDGFKFR-PTRSNISWMVCDMVEK-- 281 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-----HHHHTTTCEEEECSCTTTCC-CCSSCEEEEEECCSSC--
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-----hhhccCCCeEEEeCcccccc-CCCCCcCEEEEcCCCC--
Confidence 346899999999999999999876 89999987521 11223378999999999877 6677899999976543
Q ss_pred ccCCCchHHHHHHHHHHHHhccCC---cEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPG---GIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~Lkpg---G~~~~~~~~ 119 (210)
+...+.-+.++|..+ +.++.+.+.
T Consensus 282 ---------p~~~~~l~~~wl~~~~~~~aI~~lKL~ 308 (375)
T 4auk_A 282 ---------PAKVAALMAQWLVNGWCRETIFNLKLP 308 (375)
T ss_dssp ---------HHHHHHHHHHHHHTTSCSEEEEEEECC
T ss_pred ---------hHHhHHHHHHHHhccccceEEEEEEec
Confidence 233444444444443 555555543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=68.11 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=59.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
..+.++|.+||.|..+..+++.+ .+|+|+|.++.+++.+++ ... +++.++++|+.+++ ....+++|.|+..
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHHHcCCCCcCEEEeC
Confidence 34579999999999999999984 489999999999999999 765 78999999999864 1233679999974
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=69.39 Aligned_cols=108 Identities=6% Similarity=-0.098 Sum_probs=67.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||+||++|.|+..+++. +...|+|+|+...+...... ... ..++.....++.... +..+.+|+|++...-+
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~-l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFT-MPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTT-SCCCCCSEEEECCCCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceeee-cCCCCcCEEeecCcCC
Confidence 3468999999999999999975 55578999987542110000 000 013333333333233 5678999999976544
Q ss_pred hhccCCCchH--HHHHHHHHHHHhccCC-cEEEEEEcC
Q 028385 85 SLMCGTNAPI--SASQMLGEVSRLLKPG-GIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~--~~~~~l~~i~r~Lkpg-G~~~~~~~~ 119 (210)
.|....+ ....+++-+.++|+|| |.|++-.|.
T Consensus 159 ---sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 159 ---SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp ---CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 1211111 1234577788999999 999887766
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=70.87 Aligned_cols=113 Identities=16% Similarity=0.143 Sum_probs=81.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcC--------CCCcEEEEcccCCCCCCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEE--------IPQLKYLQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~fD~V 77 (210)
...+|||+.||.|.=+..+++... ..++++|+++.-+...+++... ..++.+...|...++....+.||.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V 227 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV 227 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence 345899999999999988888633 3699999999998888876631 1468888899887542456789999
Q ss_pred EECCccchh---ccCCC-------ch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSL---MCGTN-------AP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~---~~~~~-------~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++......- ..... .. .-..++|.+..+.|||||+++-.+++
T Consensus 228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 975432110 00000 01 12457899999999999999887776
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-06 Score=66.98 Aligned_cols=74 Identities=11% Similarity=0.026 Sum_probs=57.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----CC-CCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FE-DESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~~-~~~fD~Vi~~ 80 (210)
.+.++|..||.|..+..+++. +..+|+|+|.++.+++.++ +.. ..+++++.++..++.. .. .+++|.|+..
T Consensus 58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGEYVAERDLIGKIDGILLD 135 (347)
T ss_dssp TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHHHHHHTTCTTCEEEEEEE
T ss_pred CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHHHHHhcCCCCcccEEEEC
Confidence 457899999999999999986 3458999999999999994 543 3689999999988631 11 1369988875
Q ss_pred Ccc
Q 028385 81 GTL 83 (210)
Q Consensus 81 ~~l 83 (210)
..+
T Consensus 136 LGV 138 (347)
T 3tka_A 136 LGV 138 (347)
T ss_dssp CSC
T ss_pred Ccc
Confidence 443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.5e-06 Score=63.32 Aligned_cols=103 Identities=10% Similarity=-0.080 Sum_probs=61.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCc---EEEEc-ccCCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQL---KYLQM-DVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v---~~~~~-d~~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|+|+||+.|.|+...++. +...|.|.++.... . ..-.... +++ +|.++ |+.+++ ...+|+|+|..
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~--~~P~~~~~~Gv~~i~~~~G~Df~~~~---~~~~DvVLSDM 147 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H--EEPMLMQSYGWNIVTMKSGVDVFYKP---SEISDTLLCDI 147 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S--CCCCCCCSTTGGGEEEECSCCGGGSC---CCCCSEEEECC
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c--cCCCcccCCCceEEEeeccCCccCCC---CCCCCEEEeCC
Confidence 468999999999999988876 22234455544321 0 0001111 234 44446 987754 56899999964
Q ss_pred ccchhccCCCchHH--HHHHHHHHHHhccCCc-EEEEEEcC
Q 028385 82 TLDSLMCGTNAPIS--ASQMLGEVSRLLKPGG-IYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~--~~~~l~~i~r~LkpgG-~~~~~~~~ 119 (210)
.=. .+....+. ...++.-+.++|+||| .|++=.|.
T Consensus 148 APn---SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 148 GES---SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp CCC---CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCC---CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 321 22111111 1126777779999999 88876665
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.7e-05 Score=64.25 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=73.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc----C----------CCcEEEEeCCHHHHHHHHHhh--cCCCCcEEEEcccCCCC---C
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----G----------YEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMS---F 68 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~----------~~~v~~vD~s~~~~~~a~~~~--~~~~~v~~~~~d~~~~~---~ 68 (210)
..+|+|.+||+|.+.....+. . ...++|+|+++.+...|+.+. ......++..+|....+ .
T Consensus 218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~ 297 (530)
T 3ufb_A 218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREM 297 (530)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGC
T ss_pred CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhh
Confidence 358999999999998776542 1 135999999999999998765 23334466777776544 1
Q ss_pred CCCCcccEEEECCccchhc-------c--CCCchHHHHHHHHHHHHhcc-------CCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLM-------C--GTNAPISASQMLGEVSRLLK-------PGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~-------~--~~~~~~~~~~~l~~i~r~Lk-------pgG~~~~~~ 117 (210)
.....||+|+++..+..-. + ...........++.+.+.|| +||++.++.
T Consensus 298 ~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 298 GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 2345799999997763110 0 00111223456788888887 699987775
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-06 Score=86.07 Aligned_cols=104 Identities=17% Similarity=0.126 Sum_probs=54.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C-----CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G-----YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~-----~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..++|||||.|+|..+..+.+. + ..+++..|+|+.+.+.++++++.. ++.....|..+...+...+||+|++.
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-HVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-TEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-ccccccccccccccCCCCceeEEEEc
Confidence 3568999999999877665543 1 347999999998888877776321 22222234333211455689999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.++|.. .+....+++++++|||||.+++.+.
T Consensus 1319 ~vl~~t-------~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1319 CALATL-------GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp CC---------------------------CCEEEEEEC
T ss_pred cccccc-------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 999987 7889999999999999999988763
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.81 E-value=3e-05 Score=61.10 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=65.9
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHH--HHHhhcCCCCcEEEEc-ccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDM--MKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~--a~~~~~~~~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|||+||++|.++...+.. +...|+|+|+-..--+. ..+.+ ..+.|.|..+ |+..++ ...+|+|+|.-.
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql-~w~lV~~~~~~Dv~~l~---~~~~D~ivcDig- 169 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSY-GWNIVTMKSGVDVFYRP---SECCDTLLCDIG- 169 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBT-TGGGEEEECSCCTTSSC---CCCCSEEEECCC-
T ss_pred CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhc-CCcceEEEeccCHhhCC---CCCCCEEEEECc-
Confidence 348999999999999977665 66679999987541000 00000 1133777877 887766 267999998643
Q ss_pred chhccCCCchHHH---HHHHHHHHHhccCC-cEEEEEEcCC
Q 028385 84 DSLMCGTNAPISA---SQMLGEVSRLLKPG-GIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~---~~~l~~i~r~Lkpg-G~~~~~~~~~ 120 (210)
+. .+ .+.-+. .++|+-+.++|++| |.|++--+..
T Consensus 170 eS--s~-~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 170 ES--SS-SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CC--CS-CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred cC--CC-ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 21 11 111122 23677778999999 8887644443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=54.86 Aligned_cols=104 Identities=10% Similarity=-0.050 Sum_probs=66.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHH-hhcCCCCcEEEEc-ccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKM-KYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~-~~~~~~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+||++|.++...+.. +..+|+++|+-..--+.-+- .....+.++|..+ |+..++ ..++|.|+|.-.=
T Consensus 79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~---~~~~DtllcDIge- 154 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLP---PEKCDTLLCDIGE- 154 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCC---CCCCSEEEECCCC-
T ss_pred CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecC---CccccEEEEecCC-
Confidence 348999999999999977765 66689999986531100000 0012267899999 987665 3679999985321
Q ss_pred hhccCCCchHHH---HHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISA---SQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~---~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..+ .+..+. .++|+-+.++|++ |.|++--+.
T Consensus 155 --Ss~-~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 155 --SSP-SPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp --CCS-CHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred --CCC-ChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 111 111122 2367777899998 777664443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4.5e-05 Score=60.81 Aligned_cols=43 Identities=7% Similarity=0.007 Sum_probs=39.2
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
...|||++||+|..+..+++.+. +++|+|+++.+++.|+++..
T Consensus 236 ~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 236 GDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 35799999999999999988876 89999999999999999874
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00026 Score=55.87 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=65.2
Q ss_pred CCCCCCCCCCEEEeCC------CCchhHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC
Q 028385 1 MATPSTGTRDTCRRAA------PSIVMSEDMVKD-GY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGc------G~G~~~~~l~~~-~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 72 (210)
||+|.. ++|||+|+ ..|.+. +.+. +. ..++++|+.+-. ...+ .++++|+.... ..+
T Consensus 105 ~~vp~g--mrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~---------sda~-~~IqGD~~~~~--~~~ 168 (344)
T 3r24_A 105 LAVPYN--MRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV---------SDAD-STLIGDCATVH--TAN 168 (344)
T ss_dssp CCCCTT--CEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB---------CSSS-EEEESCGGGEE--ESS
T ss_pred EeecCC--CEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc---------cCCC-eEEEccccccc--cCC
Confidence 466643 58999997 456632 2222 22 379999997632 1122 55999987654 357
Q ss_pred cccEEEECCccchhccCC------CchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 73 SFDAVIDKGTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~------~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+||+|++...=. .+|. +...-.+.++.=+.+.|+|||.|++=.+..+
T Consensus 169 k~DLVISDMAPN--tTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs 221 (344)
T 3r24_A 169 KWDLIISDMYDP--RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 221 (344)
T ss_dssp CEEEEEECCCCT--TSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred CCCEEEecCCCC--cCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence 899999953211 1111 1223467777778889999999988766543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0002 Score=58.37 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=49.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM 66 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~ 66 (210)
...|||||+|.|.++..+++. ...+|+++|+++.++...++.. ..++++++.+|+.++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccch
Confidence 357999999999999999986 3348999999999999998876 447899999999653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00017 Score=56.83 Aligned_cols=101 Identities=6% Similarity=-0.003 Sum_probs=75.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CC--CCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MS--FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~--~~~~~~fD~Vi~~~~l~ 84 (210)
...+||+=+|||.++..+++.+ .+++.+|.++..++..+++.+...+++++..|... +. .-+...||+|+....++
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe 170 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYE 170 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCC
Confidence 3568999999999999998854 69999999999999999988766789999999654 21 02345799999876654
Q ss_pred hhccCCCchHHHHHHHHHHHH--hccCCcEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSR--LLKPGGIYMLI 116 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~ 116 (210)
.- ....++++.+.+ .+.++|.+++.
T Consensus 171 ~k-------~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 171 RK-------EEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp ST-------THHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CC-------cHHHHHHHHHHHhCccCCCeEEEEE
Confidence 22 345555555554 34689998664
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00089 Score=54.25 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=81.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----------------------CCcEEEEcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----------------------PQLKYLQMD 62 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-----------------------~~v~~~~~d 62 (210)
+...|+.+|||.......+... +...++-+|. |++++.-++.+.+. ++..++.+|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3457999999999999888764 3336677776 77777766654321 578899999
Q ss_pred cCCCC-------CC-CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 63 VRDMS-------FF-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 63 ~~~~~-------~~-~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+.+.. .. ..+...++++-+++.++ +.+...++++.+.+.. |+|.+++.+...|
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-----~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-----CHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 98842 11 23567899999999998 7789999999999887 7888877776555
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=54.37 Aligned_cols=73 Identities=16% Similarity=0.238 Sum_probs=60.3
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CC-----CCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FF-----EDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~-----~~~~fD~Vi~~~ 81 (210)
++++|+-||.|.++..+.+.|...+.++|+++.+++..+.+. ++..++++|+.++. .+ ....+|+|+...
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~---~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp 79 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF---PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP 79 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC---TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC---CCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence 689999999999999998888867889999999999888876 56788899998864 01 346799999876
Q ss_pred ccc
Q 028385 82 TLD 84 (210)
Q Consensus 82 ~l~ 84 (210)
...
T Consensus 80 PCQ 82 (376)
T 3g7u_A 80 PCQ 82 (376)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0016 Score=52.57 Aligned_cols=76 Identities=12% Similarity=0.007 Sum_probs=59.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+++|+.||.|.++..+.+.|...+.++|+++.+++..+.+..... .+|+.++..-.-..+|+|+.......
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~~~~~D~l~~gpPCQ~ 83 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKTIPDHDILCAGFPCQA 83 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGGSCCCSEEEEECCCTT
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhhCCCCCEEEECCCCCC
Confidence 3457899999999999999999888789999999999999998885432 67887754111125899998766654
Q ss_pred h
Q 028385 86 L 86 (210)
Q Consensus 86 ~ 86 (210)
+
T Consensus 84 f 84 (327)
T 2c7p_A 84 F 84 (327)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00038 Score=56.67 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=57.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
..+|+|+-||.|.++..+.+.| ...+.++|+++.+++..+.+. ++..++++|+.++. .++...+|+|+.....
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~---~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPC 78 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc---cccccccCCHHHccHhHcCcCCcCEEEEcCCC
Confidence 4679999999999999998887 447999999999999999887 44567889998864 0111258999987765
Q ss_pred chh
Q 028385 84 DSL 86 (210)
Q Consensus 84 ~~~ 86 (210)
..+
T Consensus 79 q~f 81 (343)
T 1g55_A 79 QPF 81 (343)
T ss_dssp ---
T ss_pred cch
Confidence 433
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0068 Score=48.52 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-----CCCCcEEEEcccCCCC--------CCCCCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-----EIPQLKYLQMDVRDMS--------FFEDESF 74 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~v~~~~~d~~~~~--------~~~~~~f 74 (210)
...|+++|||-=.....+.......++-+| .|.+++..++.+. ...+..++.+|+.+ . .+..+.-
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence 346999999987775555421224788999 5999998888775 23678899999987 3 1333445
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
=++++-++++++ +.+....+++.+...+.||+.+++-...
T Consensus 181 t~~i~Egvl~Yl-----~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 181 TAWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEEechHhhC-----CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 578888999998 6788899999999998899888655443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0044 Score=49.42 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=71.9
Q ss_pred CCCEEEeCCCCchhHHHHHH-----cCCC--cEEEEeCCH------------HHHHHHHHhhcC--CC--CcEEEEcccC
Q 028385 8 TRDTCRRAAPSIVMSEDMVK-----DGYE--DIVNIDISS------------VAIDMMKMKYEE--IP--QLKYLQMDVR 64 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~-----~~~~--~v~~vD~s~------------~~~~~a~~~~~~--~~--~v~~~~~d~~ 64 (210)
..+|||+|=|+|.+.....+ .+.. +++.+|..+ ...+........ .. .+++..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 35799999999987644332 2222 456666421 122222222211 12 3467788887
Q ss_pred C-CCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhhcccccceEEEEEEec
Q 028385 65 D-MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIA 143 (210)
Q Consensus 65 ~-~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p 143 (210)
. ++.+.+..||+|+..+ +.....+.-=-..+++.++++++|||.+ ++|+........+. ..++.+ ..+|
T Consensus 177 ~~l~~l~~~~~Da~flDg----FsP~kNPeLWs~e~f~~l~~~~~pgg~l--aTYtaag~VRR~L~--~aGF~V--~k~~ 246 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDA----FSPYKNPELWTLDFLSLIKERIDEKGYW--VSYSSSLSVRKSLL--TLGFKV--GSSR 246 (308)
T ss_dssp HHGGGCCSCCEEEEEECC----SCTTTSGGGGSHHHHHHHHTTEEEEEEE--EESCCCHHHHHHHH--HTTCEE--EEEE
T ss_pred HHHhhhcccceeEEEeCC----CCcccCcccCCHHHHHHHHHHhCCCcEE--EEEeCcHHHHHHHH--HCCCEE--EecC
Confidence 6 4435556899998532 2222222222368999999999999988 46776555544442 344554 3444
Q ss_pred C
Q 028385 144 R 144 (210)
Q Consensus 144 ~ 144 (210)
-
T Consensus 247 G 247 (308)
T 3vyw_A 247 E 247 (308)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.013 Score=46.56 Aligned_cols=82 Identities=12% Similarity=0.035 Sum_probs=62.6
Q ss_pred CCCCCCCCEEEeCCCCchhHHHHHHcCCCc--EEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCC-CCcccEE
Q 028385 3 TPSTGTRDTCRRAAPSIVMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFE-DESFDAV 77 (210)
Q Consensus 3 ~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~--v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~-~~~fD~V 77 (210)
+......+++|+-||.|.++..+.+.|... +.++|+++.+++.-+.+. ++..+..+|+.++. .++ ...+|++
T Consensus 11 ~~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~---~~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 11 AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH---QGKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT---TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred cccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC---CCCceeCCChHHccHHHhcccCCcCEE
Confidence 444556789999999999999998888754 699999999988877776 45567889998864 011 1369999
Q ss_pred EECCccchhc
Q 028385 78 IDKGTLDSLM 87 (210)
Q Consensus 78 i~~~~l~~~~ 87 (210)
+.......++
T Consensus 88 ~ggpPCQ~fS 97 (295)
T 2qrv_A 88 IGGSPCNDLS 97 (295)
T ss_dssp EECCCCGGGB
T ss_pred EecCCCcccc
Confidence 9987665543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0026 Score=50.56 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=43.3
Q ss_pred CCcEEEEcccCC-CCCCCCCcccEEEECCccchhc-cCCC------------chHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM-CGTN------------APISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~-~~~~------------~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.++.++++|+.+ +..+++++||+|+++..+.... +... .......+++++.++|||||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 456899999987 3335678999999987764210 1000 01224567889999999999987653
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.023 Score=45.47 Aligned_cols=98 Identities=13% Similarity=0.025 Sum_probs=69.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
++|+|+=||-|.++.-+.+.|+.-+.++|+++.+.+.-+.+.. -.++.+|+.++..-.-...|+++.......++.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ 76 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPSQSWSE 76 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGGSCCCSEEECCCCGGGTEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhhCCcccEEEecCCCCCcCC
Confidence 5799999999999999988888778899999999988887763 367889998875111235899988766554431
Q ss_pred -C-----CCchHHHHHHHHHHHHhccCC
Q 028385 89 -G-----TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 89 -~-----~~~~~~~~~~l~~i~r~Lkpg 110 (210)
+ .+++..+...+-++.+.++|.
T Consensus 77 ag~~~g~~d~R~~L~~~~~r~i~~~~Pk 104 (331)
T 3ubt_Y 77 GGSLRGIDDPRGKLFYEYIRILKQKKPI 104 (331)
T ss_dssp TTEECCTTCGGGHHHHHHHHHHHHHCCS
T ss_pred CCCccCCCCchhHHHHHHHHHHhccCCe
Confidence 1 133334444444555566885
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.013 Score=45.59 Aligned_cols=105 Identities=11% Similarity=0.033 Sum_probs=71.7
Q ss_pred CCCEEEeCCCCchhHHHHHHc--------CCCcEEEEeCCHHH---------------------------HHHHH---Hh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--------GYEDIVNIDISSVA---------------------------IDMMK---MK 49 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~---------------------------~~~a~---~~ 49 (210)
++.|+|+|+-.|..+..++.. ...+++++|.-+.+ ++... ++
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 568999999999888776541 23579999921111 22111 11
Q ss_pred ---hcCC-CCcEEEEcccCCC-CC----CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 50 ---YEEI-PQLKYLQMDVRDM-SF----FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 50 ---~~~~-~~v~~~~~d~~~~-~~----~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+... ++++++.+++.+. +. .+..+||+|....-. . ......++.+...|+|||++++-++..
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y-------~~t~~~le~~~p~l~~GGvIv~DD~~~ 220 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y-------EPTKAVLEAIRPYLTKGSIVAFDELDN 220 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H-------HHHHHHHHHHGGGEEEEEEEEESSTTC
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c-------chHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 1222 6799999998873 31 345679999976532 2 567788999999999999999888754
Q ss_pred c
Q 028385 121 P 121 (210)
Q Consensus 121 p 121 (210)
+
T Consensus 221 ~ 221 (257)
T 3tos_A 221 P 221 (257)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.015 Score=47.46 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=61.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~ 81 (210)
..+||-+|+|. |..+..+++. +..+|+++|.++..++.+++.-.. .++..+-.+. ....++.+|+|+...
T Consensus 191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~~~~gg~D~vid~~ 266 (371)
T 1f8f_A 191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT----HVINSKTQDPVAAIKEITDGGVNFALEST 266 (371)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC----EEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence 35799999876 7777777775 554699999999999988765321 1222211111 001123799999743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ....++...++|+++|+++++..
T Consensus 267 g-------------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 267 G-------------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp C-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred C-------------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 2 12457888999999999977643
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=47.64 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=50.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...|+|+|+|+|.+...+++. ...+++.||+|+...+.-+++.....++.|.. ++.++| ++ .-+|++
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~~-~l~~lp---~~-~~~viA 155 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHD-SFEDVP---EG-PAVILA 155 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEES-SGGGSC---CS-SEEEEE
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEeC-ChhhcC---CC-CeEEEe
Confidence 457999999999999888752 12379999999998887777665433566552 233333 22 346666
Q ss_pred CCccchh
Q 028385 80 KGTLDSL 86 (210)
Q Consensus 80 ~~~l~~~ 86 (210)
+.+|+++
T Consensus 156 NE~fDAl 162 (387)
T 1zkd_A 156 NEYFDVL 162 (387)
T ss_dssp ESSGGGS
T ss_pred ccccccC
Confidence 6666654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.02 Score=46.17 Aligned_cols=74 Identities=8% Similarity=0.060 Sum_probs=56.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCC--CcE-EEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGY--EDI-VNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~--~~v-~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~ 82 (210)
..+++|+-||.|.++..+.+.|. ..+ .++|+++.+.+.-+.+... . +.++|+.++. .++...+|+++....
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~-~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E-VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C-CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C-cccCChhhcCHHHhccCCCCEEEecCC
Confidence 46899999999999999988874 456 7999999999998888743 2 5678888764 122236899998766
Q ss_pred cch
Q 028385 83 LDS 85 (210)
Q Consensus 83 l~~ 85 (210)
...
T Consensus 86 CQ~ 88 (327)
T 3qv2_A 86 CQP 88 (327)
T ss_dssp CTT
T ss_pred ccC
Confidence 443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.038 Score=44.62 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||-+|+|. |.++..+++. +..+|+++|.++.-++.+++.-.. .++..+-.+.. ......+|+|+.
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT----DIINYKNGDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC----EEECGGGSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc----eEEcCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 345789999876 7777777776 554899999999988888775321 22221111110 022346999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- ...++...+.|++||+++.+..
T Consensus 242 ~~g~-------------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 242 AGGD-------------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp CSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCCC-------------hHHHHHHHHHHhcCCEEEEecc
Confidence 4321 1347778899999999977654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0091 Score=48.26 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=57.9
Q ss_pred CCEEEeCCCCchhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l~ 84 (210)
.+++|+-||.|.++..+.+.|. ..+.++|+++.+.+.-+.+. ++..+...|+.++. .++...+|+++....-.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~---~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ 80 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF---PETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQ 80 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECCCGGGCCHHHHHHTTCCEEEECCCCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC---CCCceeccccccCCHHHhccCCCCEEEecCCCc
Confidence 5799999999999999988775 46899999999999888887 44567788888764 12233689999876544
Q ss_pred hh
Q 028385 85 SL 86 (210)
Q Consensus 85 ~~ 86 (210)
.+
T Consensus 81 ~f 82 (333)
T 4h0n_A 81 PF 82 (333)
T ss_dssp CS
T ss_pred ch
Confidence 33
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.038 Score=46.86 Aligned_cols=76 Identities=12% Similarity=0.023 Sum_probs=59.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCC-----------------
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE----------------- 70 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~----------------- 70 (210)
..+++|+-||.|.++.-+.+.|...+.++|+++.+.+.-+.+....++..++++|+.++. ..
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~-~~~~~~~~~~~~~~~i~~~ 166 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT-LSHQEGVSDEAAAEHIRQH 166 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHH-CTTCTTSCHHHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhh-hccccccchhhHHhhhhhc
Confidence 468999999999999999888876699999999999988888754456677888887653 11
Q ss_pred CCcccEEEECCccc
Q 028385 71 DESFDAVIDKGTLD 84 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~ 84 (210)
-..+|+++......
T Consensus 167 ~~~~Dvl~gGpPCQ 180 (482)
T 3me5_A 167 IPEHDVLLAGFPCQ 180 (482)
T ss_dssp SCCCSEEEEECCCC
T ss_pred CCCCCEEEecCCCc
Confidence 13589999866544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.05 Score=44.79 Aligned_cols=103 Identities=9% Similarity=0.070 Sum_probs=62.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-C----C-CCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-S----F-FEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-~----~-~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |.++..+++. +..+|+++|.++..++.+++.- .+++..+-.+. . . .....+|+|+.
T Consensus 186 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-----a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-----FETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-----CEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-----CcEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 35799999976 7788888775 5558999999999888886532 22232211111 0 0 11236999997
Q ss_pred CCccchhccCCCc---hHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNA---PISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~---~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-.-... +... .......+++..++|++||+++++.
T Consensus 261 ~~g~~~~--~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 261 AVGFEAH--GLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp CSCTTCB--CSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCCccc--cccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 5332100 0000 0001235788889999999987654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.097 Score=42.37 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc------cCC-C-CCCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD------VRD-M-SFFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d------~~~-~-~~~~~~~fD~V 77 (210)
..+||-+|+|. |.++..+++. |...|+++|.++.-.+.+++. . +.+.....+ +.+ + .......+|+|
T Consensus 180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~--~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv 256 (363)
T 3m6i_A 180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C--PEVVTHKVERLSAEESAKKIVESFGGIEPAVA 256 (363)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C--TTCEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c--hhcccccccccchHHHHHHHHHHhCCCCCCEE
Confidence 35788899865 7777777776 554599999999999999876 3 222222211 111 0 00234579999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+..-. -...+....++|++||+++++..
T Consensus 257 id~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 257 LECTG-------------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp EECSC-------------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred EECCC-------------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 97432 12357778899999999987654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.044 Score=44.22 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=60.9
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+||-+|+|. |..+..+++. +. +|+++|.++.-.+.+++.-. . .++ .+...+. . .+|+|+....-.
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa--~--~v~-~~~~~~~---~-~~D~vid~~g~~ 245 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGV--K--HFY-TDPKQCK---E-ELDFIISTIPTH 245 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTC--S--EEE-SSGGGCC---S-CEEEEEECCCSC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCC--C--eec-CCHHHHh---c-CCCEEEECCCcH
Confidence 345788899875 7777777775 55 89999999988888876421 1 222 3333222 2 799999743322
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..++...++|+++|+++++...
T Consensus 246 -------------~~~~~~~~~l~~~G~iv~~G~~ 267 (348)
T 3two_A 246 -------------YDLKDYLKLLTYNGDLALVGLP 267 (348)
T ss_dssp -------------CCHHHHHTTEEEEEEEEECCCC
T ss_pred -------------HHHHHHHHHHhcCCEEEEECCC
Confidence 1366788899999999876543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.075 Score=43.32 Aligned_cols=94 Identities=11% Similarity=0.127 Sum_probs=61.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CC---CCCCcccEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SF---FEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~---~~~~~fD~Vi 78 (210)
..+||-+|+|. |.++..+++. |..+|+++|.++.-.+.+++.-.. .++...-.+. .. ...+.+|+|+
T Consensus 183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence 34788899865 6777777775 555899999999999888775321 1121111110 00 2234799999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.... ....++...++|++||.++++..
T Consensus 259 d~~G-------------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 259 ECAG-------------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp ECSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred ECCC-------------CHHHHHHHHHHhccCCEEEEEec
Confidence 7422 12457788899999999977643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.069 Score=43.22 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=60.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCC----CCCCCCCcccEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRD----MSFFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~----~~~~~~~~fD~Vi 78 (210)
..+||-+|+|. |.++..+++. +..+|+++|.++.-++.+++.-. . .++..+ ..+ +.....+.+|+|+
T Consensus 172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~--~vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA--D--LVLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC--S--EEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC--C--EEEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 35799999875 7777777775 55489999999998888875432 1 222211 011 1001115699999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..-.- ...+....++|++||+++.+..
T Consensus 248 d~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 248 ECTGA-------------EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp ECSCC-------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred ECCCC-------------hHHHHHHHHHhcCCCEEEEEec
Confidence 74321 2346778899999999977643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.018 Score=46.32 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCcEEEEcccCC-CCCCCCCcccEEEECCccchhc---cCCC----chHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 54 PQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM---CGTN----APISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 54 ~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~---~~~~----~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+..++++|..+ +..+++++||+|++...+.... ++.. -.......+.+++++|||||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 457889999875 3336688999999986653210 0000 01356788999999999999987753
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.12 Score=42.37 Aligned_cols=105 Identities=9% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CC----C-CCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MS----F-FEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~----~-~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |.++..+++. |...|+++|.++.-++.+++.- .+.+...-.+ +. . .....+|+|+.
T Consensus 186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-----a~~i~~~~~~~~~~~v~~~t~g~g~Dvvid 260 (398)
T 1kol_A 186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEVDCAVD 260 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-----CcEEccCCcchHHHHHHHHhCCCCCCEEEE
Confidence 34789999876 7777778775 5557999999999999887542 1222211111 00 0 12246999998
Q ss_pred CCccchhccCC--CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGT--NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~--~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-.-....-.. ....+....++...++|++||+++++.
T Consensus 261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 54321000000 000122346788899999999997654
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.086 Score=42.30 Aligned_cols=93 Identities=11% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-CC--CCCcccEEEECC
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FF--EDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~--~~~~fD~Vi~~~ 81 (210)
...+||-.|+|. |..+..+++. +. +|+++|.+++-.+.+++.-.. .++..+-.+.. .. ..+.+|+|+...
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~~~~~~~g~~d~vid~~ 240 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAE----VAVNARDTDPAAWLQKEIGGAHGVLVTA 240 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCS----EEEETTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCC----EEEeCCCcCHHHHHHHhCCCCCEEEEeC
Confidence 345788899976 8888888876 55 899999999999988764321 12211111110 00 113689998642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ....++...++|+++|+++++.
T Consensus 241 g-------------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 241 V-------------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp C-------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred C-------------CHHHHHHHHHHhccCCEEEEeC
Confidence 2 1345778889999999997764
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.043 Score=45.51 Aligned_cols=60 Identities=7% Similarity=0.138 Sum_probs=46.6
Q ss_pred CCCCCEEEeCCCCchhHHHHH-Hc-C-CCcEEEEeCCHHHHHHHHHhhcC-----C-CCcEEEEcccCC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMV-KD-G-YEDIVNIDISSVAIDMMKMKYEE-----I-PQLKYLQMDVRD 65 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~-~~-~-~~~v~~vD~s~~~~~~a~~~~~~-----~-~~v~~~~~d~~~ 65 (210)
.....++|+||+.|..+..++ +. + ..+|+++|.+|...+..+++.+. . ++++++..-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 344579999999999999887 43 3 35899999999999999988754 3 567777665544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.62 Score=32.05 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=58.0
Q ss_pred CCCEEEeCCCC-ch-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IV-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~-~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
..+|+=+|+|. |. ++..+.+.+. +|+++|.+++.++.+++ ..+.++.+|..+.. ...-...|+|+....
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~-----~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE-----RGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH-----TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH-----cCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 45799999865 32 2233334465 89999999999888765 24678889987642 122357898886422
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
- ......+....+.+.|+..++...
T Consensus 81 ~----------~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 81 N----------GYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp C----------HHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred C----------hHHHHHHHHHHHHHCCCCeEEEEE
Confidence 1 111222334556667887765443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=0.27 Score=39.55 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=59.1
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc-CCCC----C-CC---CCcccE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV-RDMS----F-FE---DESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~-~~~~----~-~~---~~~fD~ 76 (210)
..+||-+|+|. |..+..+++. +. +|+++|.++.-.+.+++.-. + .++..+- .+.. . .. .+.+|+
T Consensus 169 g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa--~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D~ 243 (352)
T 1e3j_A 169 GTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGA--D--VTLVVDPAKEEESSIIERIRSAIGDLPNV 243 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTC--S--EEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCC--C--EEEcCcccccHHHHHHHHhccccCCCCCE
Confidence 34789999865 6677777765 55 69999999999888875422 1 2222110 1110 0 11 246999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+....- ...++...++|+++|+++.+..
T Consensus 244 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 244 TIDCSGN-------------EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EEECSCC-------------HHHHHHHHHHSCTTCEEEECSC
T ss_pred EEECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 9974321 2346778899999999977643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.13 Score=41.87 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc--cCCCC----CCCCCcccEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD--VRDMS----FFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d--~~~~~----~~~~~~fD~Vi 78 (210)
...+||-+|+|. |.++..+++. +..+|+++|.++.-++.+++.-.. .++... -.++. ...++.+|+|+
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~i~~~~~gg~D~vi 268 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN----EFVNPKDHDKPIQEVIVDLTDGGVDYSF 268 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC----EEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----EEEccccCchhHHHHHHHhcCCCCCEEE
Confidence 345799999864 6777777765 655899999999988888754211 122111 01110 01234799999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.... ....++...+.|++| |+++++..
T Consensus 269 d~~g-------------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 269 ECIG-------------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred ECCC-------------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 7422 134578888999997 99977654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.03 Score=49.62 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=67.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-----------C--CCcEEEEeC---CHHHHHHHHHhh-----------cCC------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-----------G--YEDIVNIDI---SSVAIDMMKMKY-----------EEI------ 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-----------~--~~~v~~vD~---s~~~~~~a~~~~-----------~~~------ 53 (210)
...+|+|+|-|+|.+...+.+. . ..+++.+|. +.+.+..+.+.. ...
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3458999999999888776542 1 136899998 555555433211 111
Q ss_pred ----------CCcEEEEcccCC-CCCCC---CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 54 ----------PQLKYLQMDVRD-MSFFE---DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 54 ----------~~v~~~~~d~~~-~~~~~---~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.+++..+|+.+ ++.+. +..+|.++..+. .....+..=...++..+.++++|||.+ .+++
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f----~p~~np~~w~~~~~~~l~~~~~~g~~~--~t~~ 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGF----APAKNPDMWNEQLFNAMARMTRPGGTF--STFT 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSS----CC--CCTTCSHHHHHHHHHHEEEEEEE--EESC
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCC----CCCCChhhhhHHHHHHHHHHhCCCCEE--Eecc
Confidence 135677778765 33232 468999986432 111111111367899999999999987 4555
Q ss_pred Cchhh
Q 028385 120 DPKAR 124 (210)
Q Consensus 120 ~p~~~ 124 (210)
.....
T Consensus 212 ~~~~v 216 (689)
T 3pvc_A 212 AAGFV 216 (689)
T ss_dssp CCHHH
T ss_pred CcHHH
Confidence 44433
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.19 Score=40.77 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred CCEEEeC-CCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc--cCC-CCCCCCCcccEEEECCc
Q 028385 9 RDTCRRA-APS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD--VRD-MSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d--~~~-~~~~~~~~fD~Vi~~~~ 82 (210)
.+||=.| +|. |.++..+++. +..+|+++|.+++-++.+++.-.. .++... ... +.....+.+|+|+....
T Consensus 173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad----~vi~~~~~~~~~v~~~~~~g~Dvvid~~g 248 (363)
T 4dvj_A 173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAH----HVIDHSKPLAAEVAALGLGAPAFVFSTTH 248 (363)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCS----EEECTTSCHHHHHHTTCSCCEEEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHhcCCCceEEEECCC
Confidence 4688888 544 7888888886 556999999999988888764211 112111 000 11133457999987422
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-...++...++|+++|+++++
T Consensus 249 -------------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 249 -------------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp -------------HHHHHHHHHHHSCTTCEEEEC
T ss_pred -------------chhhHHHHHHHhcCCCEEEEE
Confidence 234578888999999999766
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.16 Score=41.17 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=60.1
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||-+|+|. |..+..+++. |. +|+++|.++.-++.+++.-. -.++..+-.++. ......+|+|+.
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~~~g~g~D~vid 263 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGA----DHGINRLEEDWVERVYALTGDRGADHILE 263 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCC----CEEEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 345799999765 6777777765 55 89999999998888876432 122222111110 012347999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
... ...+....++|+++|.++++..
T Consensus 264 ~~g--------------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 264 IAG--------------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp ETT--------------SSCHHHHHHHEEEEEEEEEECC
T ss_pred CCC--------------hHHHHHHHHHhhcCCEEEEEec
Confidence 432 1236677889999999987754
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.045 Score=45.63 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCCEEEeCCCCchhHHHHHHc----C--CCcEEEEeCCHHHHHHHHHhhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----G--YEDIVNIDISSVAIDMMKMKYE 51 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~--~~~v~~vD~s~~~~~~a~~~~~ 51 (210)
..+|+|+|+|+|.+...+++. + ..+++.||+|+...+.-+++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 468999999999999888753 1 2379999999988877776653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.061 Score=43.83 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||-+|+|. |.++..+++. +. +|+++|.++.-++.+++.-. . .++...-.+ ..... +.+|+|+....-.
T Consensus 195 g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa--~--~vi~~~~~~~~~~~~-~g~Dvvid~~g~~ 268 (369)
T 1uuf_A 195 GKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGA--D--EVVNSRNADEMAAHL-KSFDFILNTVAAP 268 (369)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC--S--EEEETTCHHHHHTTT-TCEEEEEECCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC--c--EEeccccHHHHHHhh-cCCCEEEECCCCH
Confidence 35789999875 6777777765 55 79999999988888876321 1 122111001 11122 5799999743321
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++...++|+++|+++.+.
T Consensus 269 -------------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 269 -------------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp -------------CCHHHHHTTEEEEEEEEECC
T ss_pred -------------HHHHHHHHHhccCCEEEEec
Confidence 12566788999999987654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.1 Score=41.85 Aligned_cols=56 Identities=2% Similarity=-0.084 Sum_probs=43.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRD 65 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~ 65 (210)
..|||.-||+|..+....+.+. +.+|+|+++.+++.++++.... .....++.|+.+
T Consensus 254 ~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 310 (323)
T 1boo_A 254 DLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNISEEKITDIYNR 310 (323)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4699999999999998888876 8999999999999999998543 223333444433
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.22 Score=39.52 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=59.4
Q ss_pred CEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+||=.|+ |.|..+..+++. |. +|++++.+++-.+.+++.-.. .++. .+.........+.+|+|+..-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~d~v~d~~g--- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGAN----RILSRDEFAESRPLEKQLWAGAIDTVG--- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCS----EEEEGGGSSCCCSSCCCCEEEEEESSC---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC----EEEecCCHHHHHhhcCCCccEEEECCC---
Confidence 5999997 347777777776 55 899999999988888764321 1111 1111111133457999986321
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ..+++..++|+++|+++.+..
T Consensus 221 ---------~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 221 ---------D--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp ---------H--HHHHHHHHTEEEEEEEEECCC
T ss_pred ---------c--HHHHHHHHHHhcCCEEEEEec
Confidence 1 268888999999999977643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.22 Score=40.45 Aligned_cols=94 Identities=11% Similarity=0.029 Sum_probs=59.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc--CCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |.++..+++. +..+|+++|.++.-.+.+++.-.. .++..+- .++. ...++.+|+|+.
T Consensus 191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~v~~~~~~g~D~vid 266 (373)
T 2fzw_A 191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDYSFE 266 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc----eEeccccccccHHHHHHHHhCCCCCEEEE
Confidence 34789999865 6667777765 555799999999988888754321 1221110 1110 011247999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
...- ...++...++|+++ |+++++..
T Consensus 267 ~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 267 CIGN-------------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp CSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCc-------------HHHHHHHHHhhccCCcEEEEEec
Confidence 4321 23577888999999 99976543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.19 Score=40.75 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=59.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc--CCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |..+..+++. +..+|+++|.++.-.+.+++.-. . .++..+- .++. ....+.+|+|+.
T Consensus 192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~--~vi~~~~~~~~~~~~i~~~t~gg~Dvvid 267 (373)
T 1p0f_A 192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA--T--ECLNPKDYDKPIYEVICEKTNGGVDYAVE 267 (373)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC--S--EEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC--c--EEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 34799999865 6677777765 55579999999998888875321 1 1221110 1110 011247999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-.- ...++...++|+++ |+++++..
T Consensus 268 ~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 268 CAGR-------------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp CSCC-------------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCC-------------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 4321 24577888999999 99876543
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.12 Score=40.55 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCCCCcEEE-EcccCCCCCCCCCcccEEEECCc----cchh-
Q 028385 16 APSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEIPQLKYL-QMDVRDMSFFEDESFDAVIDKGT----LDSL- 86 (210)
Q Consensus 16 cG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~v~~~-~~d~~~~~~~~~~~fD~Vi~~~~----l~~~- 86 (210)
++.|.....+.+.....|..+|..-..- .++. .-.+..++. .+|+...+ ..+.+|+|++... -||.
T Consensus 150 ~~~~~~~~~~~k~~g~~vl~v~~~~~~p---~k~v~wi~Pi~GAt~~~~lDfg~p~--~~~k~DvV~SDMApn~sGh~yq 224 (320)
T 2hwk_A 150 HPQSDFSSFVSKLKGRTVLVVGEKLSVP---GKMVDWLSDRPEATFRARLDLGIPG--DVPKYDIIFVNVRTPYKYHHYQ 224 (320)
T ss_dssp CCCCCCHHHHHTSSCSEEEEEESCCCCT---TSEEEEEESSTTCSEECCGGGCSCT--TSCCEEEEEEECCCCCCSCHHH
T ss_pred cCCCCHHHHHhhCCCcEEEEEecccccC---CceeEeeccCCCceeecccccCCcc--ccCcCCEEEEcCCCCCCCcccc
Confidence 4566666666665444676666432110 1111 011334444 56665533 2367999999532 2221
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.| .+......-++.-..++|+|||.|++-.|...+
T Consensus 225 QC-~DHarii~Lal~fA~~vLkPGGtfV~KvyggaD 259 (320)
T 2hwk_A 225 QC-EDHAIKLSMLTKKACLHLNPGGTCVSIGYGYAD 259 (320)
T ss_dssp HH-HHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCS
T ss_pred cc-chHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 00 000133444778889999999999999998773
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.13 Score=41.35 Aligned_cols=93 Identities=6% Similarity=0.069 Sum_probs=61.3
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----C-CCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~fD~Vi~ 79 (210)
...+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.. .++..+- +.. . .....+|+|+.
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~----~~i~~~~-~~~~~v~~~t~g~g~d~v~d 245 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD----AAVKSGA-GAADAIRELTGGQGATAVFD 245 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS----EEEECST-THHHHHHHHHGGGCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC----EEEcCCC-cHHHHHHHHhCCCCCeEEEE
Confidence 345788899865 7777777765 456899999999999988764321 1222111 110 0 12237999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.-. ....++...++|+++|+++++.
T Consensus 246 ~~G-------------~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 246 FVG-------------AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp SSC-------------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCC-------------CHHHHHHHHHHHhcCCEEEEEC
Confidence 432 1236788889999999997764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.32 Score=39.97 Aligned_cols=100 Identities=7% Similarity=0.047 Sum_probs=58.6
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||=+|+|. |.++..+++. +..+|+++|.++.-++.+++.-.. .++..+-.+.. ......+|+|+.
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD----HVIDPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 344788899865 6666777765 555899999999999988765321 12211111110 012346999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.-.-.. .....+++.+.+.++++|+++++..
T Consensus 289 ~~g~~~--------~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 289 ATGVPQ--------LVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp CSSCHH--------HHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred CCCCcH--------HHHHHHHHHHHhccCCCcEEEEeCC
Confidence 432110 1223333333455599999977643
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.25 Score=39.73 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=59.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----C-CCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~fD~Vi~~ 80 (210)
..+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.. .++..+-.++. . .....+|+|+..
T Consensus 168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~----~~~~~~~~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGAD----YVINPFEEDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCS----EEECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence 45799999954 6666666665 544899999999988888754211 12211111110 0 123469999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
... ...++...++|+++|+++.+..
T Consensus 244 ~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 244 SGA-------------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp SCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-------------HHHHHHHHHHHhcCCEEEEEcc
Confidence 321 2457778899999999877643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.18 Score=40.94 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=59.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc--CCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |..+..+++. +..+|+++|.++.-++.+++.-. . .++..+- .++. ....+.+|+|+.
T Consensus 193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa--~--~vi~~~~~~~~~~~~~~~~~~~g~D~vid 268 (374)
T 1cdo_A 193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA--T--DFVNPNDHSEPISQVLSKMTNGGVDFSLE 268 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC--C--EEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC--c--eEEeccccchhHHHHHHHHhCCCCCEEEE
Confidence 34789999865 6677777765 55479999999998888875321 1 1221110 1110 011237999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-.- ...++...++|+++ |+++++..
T Consensus 269 ~~g~-------------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 269 CVGN-------------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp CSCC-------------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCCC-------------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 4321 23577888999999 99876543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.2 Score=36.58 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCCEEEeCCCC--chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccE
Q 028385 7 GTRDTCRRAAPS--IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~ 76 (210)
...+||..|++. |.....++.. |. +|+++|.+++..+.+++.- .. .. .|..+.. ....+.+|+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g---~~-~~--~d~~~~~~~~~~~~~~~~~~~D~ 110 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLG---VE-YV--GDSRSVDFADEILELTDGYGVDV 110 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTC---CS-EE--EETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC---CC-EE--eeCCcHHHHHHHHHHhCCCCCeE
Confidence 335799999533 5555555443 65 8999999998887765421 11 11 2332211 012346999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+.+.. ...++...++|++||+++.+.
T Consensus 111 vi~~~g--------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 111 VLNSLA--------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred EEECCc--------------hHHHHHHHHHhccCCEEEEEc
Confidence 996432 134678889999999987654
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.68 E-value=0.23 Score=40.34 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=58.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc--CCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |..+..+++. +..+|+++|.++.-++.+++.-. . .++..+- .++. ...++.+|+|+.
T Consensus 192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa--~--~vi~~~~~~~~~~~~~~~~~~~g~D~vid 267 (374)
T 2jhf_A 192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA--T--ECVNPQDYKKPIQEVLTEMSNGGVDFSFE 267 (374)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC--S--EEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--c--eEecccccchhHHHHHHHHhCCCCcEEEE
Confidence 35789999865 6677777765 54479999999988888865321 1 1221110 1110 011247999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~ 117 (210)
.-.- ...+....++|+++ |+++++.
T Consensus 268 ~~g~-------------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 268 VIGR-------------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CSCC-------------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCC-------------HHHHHHHHHHhhcCCcEEEEec
Confidence 4321 23577888999999 9987654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.098 Score=46.15 Aligned_cols=111 Identities=12% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-----------CC--CcEEEEeC---CHHHHHHHHHhhc-----------CC------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-----------GY--EDIVNIDI---SSVAIDMMKMKYE-----------EI------ 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-----------~~--~~v~~vD~---s~~~~~~a~~~~~-----------~~------ 53 (210)
...+|||+|-|+|.+.....+. .. -+++++|. +.+.+..+.+... ..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3458999999999887666442 11 25899998 7777775443211 01
Q ss_pred ----------CCcEEEEcccCC-CCCCC---CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 54 ----------PQLKYLQMDVRD-MSFFE---DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 54 ----------~~v~~~~~d~~~-~~~~~---~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.++...+|+.+ ++.+. +..||+++....- ....+.-=-..+++.+.++++|||.+ .+++
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~----p~~np~~w~~~~~~~l~~~~~~g~~~--~t~~ 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFA----PAKNPDMWTQNLFNAMARLARPGGTL--ATFT 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSC----GGGCGGGSCHHHHHHHHHHEEEEEEE--EESC
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCC----CcCChhhhhHHHHHHHHHHhCCCCEE--Eecc
Confidence 123455666655 22122 4679999864321 11111112357899999999999987 4555
Q ss_pred Cchh
Q 028385 120 DPKA 123 (210)
Q Consensus 120 ~p~~ 123 (210)
....
T Consensus 220 ~~~~ 223 (676)
T 3ps9_A 220 SAGF 223 (676)
T ss_dssp CCHH
T ss_pred CcHH
Confidence 4333
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.26 Score=39.46 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=58.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |..+..+++. +. +|+++|.++.-++.+++.-. . .+ .|..+.. ... +.+|+|+.
T Consensus 165 g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa--~--~~--~d~~~~~~~~~~~~~~-~~~d~vid 236 (339)
T 1rjw_A 165 GEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGA--D--LV--VNPLKEDAAKFMKEKV-GGVHAAVV 236 (339)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC--S--EE--ECTTTSCHHHHHHHHH-SSEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCC--C--EE--ecCCCccHHHHHHHHh-CCCCEEEE
Confidence 35799999864 6666666665 55 89999999998888865321 1 11 2322111 001 46999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- ...++...++|+++|+++.+..
T Consensus 237 ~~g~-------------~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 237 TAVS-------------KPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp SSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCCC-------------HHHHHHHHHHhhcCCEEEEecc
Confidence 4321 2357778899999999876543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.56 Score=37.50 Aligned_cols=90 Identities=16% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccE
Q 028385 7 GTRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDA 76 (210)
Q Consensus 7 ~~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~ 76 (210)
...+||-.|+ |.|.....+++. +. +|+++|.++..++.+++.-. . .++ |..+.. ......+|+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga--~--~~~--d~~~~~~~~~~~~~~~~~~~d~ 238 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGA--D--ETV--NYTHPDWPKEVRRLTGGKGADK 238 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC--S--EEE--ETTSTTHHHHHHHHTTTTCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCC--C--EEE--cCCcccHHHHHHHHhCCCCceE
Confidence 3457999998 557777777765 55 89999999998888865321 1 122 322211 012347999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+.... . ..++...+.|+++|+++.+.
T Consensus 239 vi~~~g-~-------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 239 VVDHTG-A-------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EEESSC-S-------------SSHHHHHHHEEEEEEEEESS
T ss_pred EEECCC-H-------------HHHHHHHHhhccCCEEEEEe
Confidence 997543 1 13677788999999987654
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.082 Score=42.51 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=59.4
Q ss_pred CCCCEEEeCCCC-chhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc----cc-CCCCCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DV-RDMSFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~----d~-~~~~~~~~~~fD~Vi 78 (210)
...+||-+|+|. |.++..+++.- ..+|+++|.++.-.+.+++.-.. .++.. |. ..+. ....+|+|+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~--~g~g~D~vi 243 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD----YVSEMKDAESLINKLT--DGLGASIAI 243 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS----EEECHHHHHHHHHHHH--TTCCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC----EEeccccchHHHHHhh--cCCCccEEE
Confidence 345799999964 66666776643 34899999999988888764321 12211 11 1111 133799999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..-.- ...++...++|+++|.++.+.
T Consensus 244 d~~g~-------------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 244 DLVGT-------------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp ESSCC-------------HHHHHHHHHHEEEEEEEEECC
T ss_pred ECCCC-------------hHHHHHHHHHhhcCCEEEEeC
Confidence 74321 235777889999999987754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.24 Score=39.97 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCEEEeCCCC-chhH-HHHH-Hc-CCCcEEEEeCCHH---HHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccE
Q 028385 9 RDTCRRAAPS-IVMS-EDMV-KD-GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~-~~l~-~~-~~~~v~~vD~s~~---~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~ 76 (210)
.+||-+|+|. |.++ ..++ +. +..+|+++|.+++ -.+.+++.- .+.+ |..+-. .. .+.+|+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG-----a~~v--~~~~~~~~~i~~~-~gg~Dv 245 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD-----ATYV--DSRQTPVEDVPDV-YEQMDF 245 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT-----CEEE--ETTTSCGGGHHHH-SCCEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC-----Cccc--CCCccCHHHHHHh-CCCCCE
Confidence 5799999854 6777 7777 65 5534999999887 778776532 2222 322211 01 237999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+....- ...++...++|+++|+++.+..
T Consensus 246 vid~~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 246 IYEATGF-------------PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEECSCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCC-------------hHHHHHHHHHHhcCCEEEEEeC
Confidence 9874321 2357788899999999877643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.26 Score=40.03 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc--CCCC----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|. |.++..+++. +..+|+++|.+++-.+.+++.-. . .++..+- .++. ....+.+|+|+.
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~--~vi~~~~~~~~~~~~v~~~~~~g~Dvvid 271 (376)
T 1e3i_A 196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA--T--DCLNPRELDKPVQDVITELTAGGVDYSLD 271 (376)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC--S--EEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--c--EEEccccccchHHHHHHHHhCCCccEEEE
Confidence 35789999864 6677777765 55479999999988888865321 1 1221110 1110 011237999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
.-. ....++...++|+++ |+++++..
T Consensus 272 ~~G-------------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 272 CAG-------------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp SSC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCC-------------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 422 124577888999999 99876543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.06 E-value=1.8 Score=33.17 Aligned_cols=64 Identities=6% Similarity=0.027 Sum_probs=46.7
Q ss_pred CCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
++||=.|+ |.++..+++. +. +|++++.++........ .+++++.+|+.++. -..+|+|+.....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-----~~~~~~~~D~~d~~---~~~~d~vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-----SGAEPLLWPGEEPS---LDGVTHLLISTAP 73 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-----TTEEEEESSSSCCC---CTTCCEEEECCCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-----CCCeEEEecccccc---cCCCCEEEECCCc
Confidence 57999995 7777776653 55 89999998865544332 46899999998865 3568999976553
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.64 Score=37.09 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||=.|+|. |.++..+++. +...++++|.++.-++.+++.-. ..++..+-.+.+ .-....+|+|+.
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa----~~~i~~~~~~~~~~~~~~~~~~g~d~v~d 235 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA----MQTFNSSEMSAPQMQSVLRELRFNQLILE 235 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHGGGCSSEEEEE
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC----eEEEeCCCCCHHHHHHhhcccCCcccccc
Confidence 345788889865 5555566655 66568999999998888876532 122222111110 012345888886
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
... ....++...++|++||.+++...
T Consensus 236 ~~G-------------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 236 TAG-------------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp CSC-------------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred ccc-------------ccchhhhhhheecCCeEEEEEec
Confidence 422 23457778889999999977654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.34 Score=39.52 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=59.3
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcc---cCC----C-CCCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRD----M-SFFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d---~~~----~-~~~~~~~fD~V 77 (210)
..+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-. . .++..+ -.+ + .......+|+|
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa--~--~vi~~~~~~~~~~~~~v~~~~~g~g~Dvv 271 (380)
T 1vj0_A 196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA--D--LTLNRRETSVEERRKAIMDITHGRGADFI 271 (380)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC--S--EEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC--c--EEEeccccCcchHHHHHHHHhCCCCCcEE
Confidence 34799999764 6677777765 43589999999998888875321 1 222221 011 1 00123369999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+....- ...+....++|+++|+++.+..
T Consensus 272 id~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 272 LEATGD-------------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp EECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 974321 1246778899999999876643
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.84 Score=36.47 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCCCCCCCCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----------C----------CCcEE
Q 028385 1 MATPSTGTRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------I----------PQLKY 58 (210)
Q Consensus 1 ~~~~~~~~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----------~----------~~v~~ 58 (210)
|++|..+ +|.=||+|+ ..++..++..|. +|+..|++++.++.+.++..+ . .++.+
T Consensus 1 Ma~p~~~--~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~ 77 (319)
T 3ado_A 1 MASPAAG--DVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS 77 (319)
T ss_dssp ------C--EEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE
T ss_pred CCCCCCC--eEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc
Confidence 5566544 788899986 345566667777 899999999998887665421 0 01121
Q ss_pred EEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 59 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 59 ~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
. .|+.+ .-..-|+|+-. +.+-+ +-.+++++++-++++|+.++...+.+-+.
T Consensus 78 ~-~~l~~----a~~~ad~ViEa-v~E~l-------~iK~~lf~~l~~~~~~~aIlaSNTSsl~i 128 (319)
T 3ado_A 78 C-TNLAE----AVEGVVHIQEC-VPENL-------DLKRKIFAQLDSIVDDRVVLSSSSSCLLP 128 (319)
T ss_dssp E-CCHHH----HTTTEEEEEEC-CCSCH-------HHHHHHHHHHHTTCCSSSEEEECCSSCCH
T ss_pred c-cchHh----HhccCcEEeec-cccHH-------HHHHHHHHHHHHHhhhcceeehhhhhccc
Confidence 1 22211 01235777642 23333 77889999999999999888665544333
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=1.1 Score=41.42 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=57.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC------------C--CC-
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------S--FF- 69 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~------------~--~~- 69 (210)
....+++|+-||.|.++.-+.+.|. ..+.++|+++.+.+.-+.+. ++..++..|+.++ . .+
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp 614 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN---PGSTVFTEDCNILLKLVMAGETTNSRGQRLP 614 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC---TTSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCccccccHHHHhhhccchhhhhhhhhhcc
Confidence 4456899999999999999988886 56889999999998887776 5566666664321 0 02
Q ss_pred CCCcccEEEECCccchh
Q 028385 70 EDESFDAVIDKGTLDSL 86 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~ 86 (210)
..+.+|+|+....-..+
T Consensus 615 ~~~~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 615 QKGDVEMLCGGPPCQGF 631 (1002)
T ss_dssp CTTTCSEEEECCCCTTC
T ss_pred cCCCeeEEEEcCCCcch
Confidence 23579999987665443
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.83 Score=35.69 Aligned_cols=109 Identities=12% Similarity=0.107 Sum_probs=65.7
Q ss_pred CCEEEeCCCCc-----hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSI-----VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G-----~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
..+|=.|++.| .++..+++.|. +|+.++.++...+.+++......++.++.+|+.+... + .-+..
T Consensus 32 k~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 110 (293)
T 3grk_A 32 KRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKL 110 (293)
T ss_dssp CEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 35788887633 34455666676 7999999976555444433322567889999987430 0 11478
Q ss_pred cEEEECCccchh-----ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEEc
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+++.+...... .+...+.++ ...+++.+.+.++.+|.++.++.
T Consensus 111 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 111 DFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 999987664320 011112222 23456677777888898877663
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=1.5 Score=35.32 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=73.3
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc-------------------------CCCCcEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE-------------------------EIPQLKYLQ 60 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~-------------------------~~~~v~~~~ 60 (210)
...|+-+|||.-.....+... ....++=+|. |+.++.=++... ...+.+++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 457999999998888777664 2336777776 444443222221 125678999
Q ss_pred cccCCCC---------CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 61 MDVRDMS---------FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 61 ~d~~~~~---------~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
+|+.+.. ++..+.-=++++-+++.++ +.+...++++.+.+.. |+|.+++.+...|.
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-----~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~ 234 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-----TPEQSANLLKWAANSF-ERAMFINYEQVNMG 234 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEECCTT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-----CHHHHHHHHHHHHHhC-CCceEEEEeccCCC
Confidence 9987732 2444556688888888888 7788999999999876 55666666655443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.18 Score=40.20 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CC------CCCCCcccEE
Q 028385 8 TRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MS------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~------~~~~~~fD~V 77 (210)
..+||-.|++ .|.....+++. +. +|+++|.+++.++.+++.-. . . ..|..+ -. ....+.+|+|
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~---~-~--~~d~~~~~~~~~~~~~~~~~~~d~v 218 (333)
T 1v3u_A 146 GETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGF---D-A--AFNYKTVNSLEEALKKASPDGYDCY 218 (333)
T ss_dssp SCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC---S-E--EEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCC---c-E--EEecCCHHHHHHHHHHHhCCCCeEE
Confidence 3579999983 45555555554 55 89999999988888743311 1 1 123332 11 0112479999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.+.. . ..+....++|++||+++++.
T Consensus 219 i~~~g-----------~---~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 219 FDNVG-----------G---EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EESSC-----------H---HHHHHHHTTEEEEEEEEECC
T ss_pred EECCC-----------h---HHHHHHHHHHhcCCEEEEEe
Confidence 87532 1 24678889999999997754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.32 Score=39.07 Aligned_cols=91 Identities=20% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCEEEeCCCC--chhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCC-CcccE
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFED-ESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~-~~fD~ 76 (210)
..+||-.|+|+ |.....+++. +. +|+++|.+++.++.+++.-. . .+. |..+.. .... +.+|+
T Consensus 171 g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~---~-~~~--~~~~~~~~~~~~~~~~~~~~d~ 243 (347)
T 1jvb_A 171 TKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGA---D-YVI--NASMQDPLAEIRRITESKGVDA 243 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCC---C-EEe--cCCCccHHHHHHHHhcCCCceE
Confidence 35799999984 4455555544 55 89999999998888865321 1 112 221111 0112 47999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+....- ...++...++|+++|+++.+..
T Consensus 244 vi~~~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 244 VIDLNNS-------------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEESCCC-------------HHHHTTGGGGEEEEEEEEECCS
T ss_pred EEECCCC-------------HHHHHHHHHHHhcCCEEEEECC
Confidence 9975331 2357778899999999877543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.19 Score=40.24 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCH---HHHHHHHHhhcC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISS---VAIDMMKMKYEE 52 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~---~~~~~a~~~~~~ 52 (210)
..|||.-||+|..+....+.+. +.+|+|+++ ..++.++++...
T Consensus 244 ~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 244 STVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp CEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred CEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 4699999999999998888876 899999999 999999998753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.23 Score=39.63 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
...+||-.|++ -|..+..+++. +. +|+++|.+++-++.+.+.... -.++...-.+.. ....+.+|+|+.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGF---DGAIDYKNEDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCC---SEEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC---CEEEECCCHHHHHHHHHhcCCCceEEEE
Confidence 33579999983 36666666665 55 899999999988887443321 112211111110 011357999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... ...+....+.|+++|+++++.
T Consensus 225 ~~g--------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 225 NVG--------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp SSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred CCC--------------cchHHHHHHHHhhCCEEEEEe
Confidence 432 135788889999999997654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.14 E-value=0.87 Score=34.74 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCC---------CCCcccE
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~fD~ 76 (210)
..+|=.|++.|. ++..+++.|. +|+.+|.++..++...+... .++.++.+|+.+.... .-+..|+
T Consensus 9 k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~ 85 (255)
T 4eso_A 9 KKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQTLGAIDL 85 (255)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 457888876653 3344555676 89999999988777665542 4678899998874300 0146899
Q ss_pred EEECCccchhc-cCCCchHHH-----------HHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLM-CGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~-~~~~~~~~~-----------~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++.+....... +...+.++. ..+.+.+...++.+|.++.++
T Consensus 86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 99876543210 111122222 234566777777888887765
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.28 Score=39.28 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=57.1
Q ss_pred CCCEEEeCCCC--chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
..+||-+|+|+ |..+..+++. |. +|+++|.++.-++.+++.-.. .++...-.+.. ......+|+|+.
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~----~~~~~~~~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA----YVIDTSTAPLYETVMELTNGIGADAAID 219 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc----EEEeCCcccHHHHHHHHhCCCCCcEEEE
Confidence 35799999974 6666666665 65 899999999888888764321 12221111110 012347999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- .. ..+..++|+++|+++++..
T Consensus 220 ~~g~----------~~----~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 220 SIGG----------PD----GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp SSCH----------HH----HHHHHHTEEEEEEEEECCC
T ss_pred CCCC----------hh----HHHHHHHhcCCCEEEEEee
Confidence 5331 11 2234479999999977654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.36 Score=38.62 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=57.6
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC---CC----CCCCCcccEE
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD---MS----FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~---~~----~~~~~~fD~V 77 (210)
..+||-.|+ |.|.....+++. +. +|+++|.++..++.+++.... . .+. |..+ .. ....+.+|+|
T Consensus 156 g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~-~--~~~--d~~~~~~~~~~~~~~~~~~~d~v 229 (345)
T 2j3h_A 156 GETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGF-D--DAF--NYKEESDLTAALKRCFPNGIDIY 229 (345)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCC-S--EEE--ETTSCSCSHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCC-c--eEE--ecCCHHHHHHHHHHHhCCCCcEE
Confidence 357999997 346666666664 55 899999999888888744321 1 112 3222 11 0112469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.... . ..++...++|++||+++++.
T Consensus 230 i~~~g------------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 230 FENVG------------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EESSC------------H--HHHHHHHTTEEEEEEEEECC
T ss_pred EECCC------------H--HHHHHHHHHHhcCCEEEEEc
Confidence 87432 1 35788889999999987653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=0.29 Score=39.20 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
...+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++. . . .++..+-.++. ....+.+|+|+..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a--~--~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A--D--RLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C--S--EEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H--H--hccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 345799999854 6666666665 444899999998877666543 1 1 12211111110 0013469999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..- ...++...++|+++|+++.+..
T Consensus 239 ~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 239 SGN-------------EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp SCC-------------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 321 2357778899999999876643
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=1.7 Score=33.09 Aligned_cols=108 Identities=8% Similarity=0.056 Sum_probs=65.4
Q ss_pred CCEEEeCCC--Cch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCC----C-----CCC
Q 028385 9 RDTCRRAAP--SIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF----F-----EDE 72 (210)
Q Consensus 9 ~~vLdiGcG--~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~----~-----~~~ 72 (210)
..+|=.|++ .|. ++..+++.|. +|+.++.++...+.+.+..... .++.++.+|+.+... + .-+
T Consensus 8 k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (266)
T 3oig_A 8 RNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVG 86 (266)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHS
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 457778875 332 4455566677 8999998875555544443322 368999999988530 0 013
Q ss_pred cccEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
..|+++.+...... .....+.++.. .+++.+...++++|.++.++
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 87 VIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 68999987654320 01111223322 35667777888889887776
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.16 Score=40.87 Aligned_cols=91 Identities=14% Similarity=0.178 Sum_probs=57.3
Q ss_pred CCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
..+||-+|++ .|.....+++. +. +|+++|.++...+.+++.-. . .+ .|..+.. ...++.+|+|
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~--~--~~--~d~~~~~~~~~~~~~~~~~~~D~v 242 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGG--E--VF--IDFTKEKDIVGAVLKATDGGAHGV 242 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTC--C--EE--EETTTCSCHHHHHHHHHTSCEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCC--c--eE--EecCccHhHHHHHHHHhCCCCCEE
Confidence 3579999983 45666666654 55 89999999887777765321 1 11 2333111 0011269999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+..... ...++...+.|+++|+++.+..
T Consensus 243 i~~~g~-------------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 243 INVSVS-------------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EECSSC-------------HHHHHHHTTSEEEEEEEEECCC
T ss_pred EECCCc-------------HHHHHHHHHHHhcCCEEEEEeC
Confidence 975331 2457888999999999876643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.18 E-value=0.16 Score=40.71 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=41.6
Q ss_pred cEEE-EcccCC-CCCCCCCcccEEEECCccchhc--c--CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 56 LKYL-QMDVRD-MSFFEDESFDAVIDKGTLDSLM--C--GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 56 v~~~-~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~--~--~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++ ++|... +..+++++||+|+....+.--. + ...-.......+.++.++|+|||.+++..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 4677 899866 2225678999999976653110 0 00112356788899999999999987654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.64 Score=36.88 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=58.6
Q ss_pred CCCEEEeCC-C-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 8 TRDTCRRAA-P-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
..+||-.|+ | .|..+..+++. +. +|++++.+++-++.+++.-.. .++..+-.+.. ......+|+|+.
T Consensus 141 g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~----~~~~~~~~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 141 GEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAW----ETIDYSHEDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC----EEEeCCCccHHHHHHHHhCCCCceEEEE
Confidence 357888883 3 36666666665 65 899999999988888764311 12221111110 022357999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...- ..+....+.|+++|+++++..
T Consensus 216 ~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 216 GVGQ--------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp SSCG--------------GGHHHHHTTEEEEEEEEECCC
T ss_pred CCCh--------------HHHHHHHHHhcCCCEEEEEec
Confidence 5332 246677889999999977653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.16 Score=41.02 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccC-CC-CCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-DM-SFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~-~~-~~~~~~~fD~Vi~~~~l 83 (210)
..+||-+|+|. |..+..+++. +. +|+++|.++.-++.+++.-. . .++..+-. +. .... +.+|+|+....-
T Consensus 180 g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa--~--~v~~~~~~~~~~~~~~-~~~D~vid~~g~ 253 (360)
T 1piw_A 180 GKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA--D--HYIATLEEGDWGEKYF-DTFDLIVVCASS 253 (360)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC--S--EEEEGGGTSCHHHHSC-SCEEEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCC--C--EEEcCcCchHHHHHhh-cCCCEEEECCCC
Confidence 35799999854 6666677665 65 79999999988888876321 1 22222111 11 0012 479999975332
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
- ....++...++|++||+++.+.
T Consensus 254 ~-----------~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 254 L-----------TDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp S-----------TTCCTTTGGGGEEEEEEEEECC
T ss_pred C-----------cHHHHHHHHHHhcCCCEEEEec
Confidence 0 0112455678999999987654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.74 Score=36.62 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=57.9
Q ss_pred CCCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEE
Q 028385 7 GTRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi 78 (210)
...+||-.|+ |-|..+..+++. |. +|+++|.++.-++.+++.-. -.++..+-.+.. ......+|+|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga----~~~~~~~~~~~~~~~~~~~~~~g~D~vi 222 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGA----EYLINASKEDILRQVLKFTNGKGVDASF 222 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC----cEEEeCCCchHHHHHHHHhCCCCceEEE
Confidence 3457899985 336666666665 55 89999999998888766421 122222111110 01245699999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
....- ..++...+.|++||+++.+.
T Consensus 223 d~~g~--------------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 223 DSVGK--------------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp ECCGG--------------GGHHHHHHHEEEEEEEEECC
T ss_pred ECCCh--------------HHHHHHHHHhccCCEEEEEc
Confidence 74321 34677788999999997764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=2 Score=34.01 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCC-cEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|.=||+|. +.++..+.+.+.. +|++.|.+++.++.+++.- -+.-...|..+. .-...|+|+..-..
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G----~~~~~~~~~~~~---~~~~aDvVilavp~-- 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAKV---EDFSPDFVMLSSPV-- 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCTTGG---GGGCCSEEEECSCG--
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC----CcchhcCCHHHH---hhccCCEEEEeCCH--
Confidence 5788899875 4455555555543 7999999998888776532 111122233220 11347998864332
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.....+++++...+++|..++-
T Consensus 105 --------~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 105 --------RTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp --------GGHHHHHHHHHHHSCTTCEEEE
T ss_pred --------HHHHHHHHHHhhccCCCcEEEE
Confidence 4456788899999999876643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.04 E-value=4.3 Score=31.29 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=49.7
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCC-C---CC------CCCc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM-S---FF------EDES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~-~---~~------~~~~ 73 (210)
..||=.|++.|. ++..+++.|. +|+.++.++.-.+.+.+..... .++.++.+|+.+. . .+ .-+.
T Consensus 13 k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~ 91 (311)
T 3o26_A 13 RCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGK 91 (311)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred cEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCC
Confidence 356777766552 3344455576 8999999998777666655332 4789999999886 2 00 0146
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+++.+...
T Consensus 92 iD~lv~nAg~ 101 (311)
T 3o26_A 92 LDILVNNAGV 101 (311)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCcc
Confidence 8999988764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.94 E-value=0.84 Score=36.13 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=56.2
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
..+||-.|+ |.|.....+++. +. +|+++|.+++.++.+++.-. . .+. |..+.. ......+|+|
T Consensus 141 g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~---~-~~~--~~~~~~~~~~~~~~~~~~~~D~v 213 (327)
T 1qor_A 141 DEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGA---W-QVI--NYREEDLVERLKEITGGKKVRVV 213 (327)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC---C-EEE--ECCCccHHHHHHHHhCCCCceEE
Confidence 356898884 335555555554 65 89999999988888776321 1 112 222211 0123469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.... ...++...++|+++|+++++..
T Consensus 214 i~~~g--------------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 214 YDSVG--------------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EECSC--------------GGGHHHHHHTEEEEEEEEECCC
T ss_pred EECCc--------------hHHHHHHHHHhcCCCEEEEEec
Confidence 97543 1236778899999999877643
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=1.1 Score=40.26 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV 63 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~ 63 (210)
..++|+|+=||.|.++.-+.+.| +.-+.++|+++.+++.-+.+. ++..+.+.|+
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh---p~~~~~~~di 270 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH---PQTEVRNEKA 270 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC---TTSEEEESCH
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC---CCCceecCcH
Confidence 44679999999999998887654 446889999999999888776 4445555544
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.83 E-value=2 Score=33.21 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
..+|=.|++.| .++..+++.|. +|+.+|.++..++...+... .++.++.+|+.+... + .-+..|+
T Consensus 30 k~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 106 (277)
T 3gvc_A 30 KVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIG--CGAAACRVDVSDEQQIIAMVDACVAAFGGVDK 106 (277)
T ss_dssp CEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--SSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC--CcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 34677776655 23445556676 89999999887777665552 467889999987430 0 0136899
Q ss_pred EEECCccchhc-cCCCchHHHH-----------HHHHHHHHhc--cCCcEEEEEE
Q 028385 77 VIDKGTLDSLM-CGTNAPISAS-----------QMLGEVSRLL--KPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~-~~~~~~~~~~-----------~~l~~i~r~L--kpgG~~~~~~ 117 (210)
++.+....... +...+.++.. .+.+.+.+.+ +.+|.++.++
T Consensus 107 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~is 161 (277)
T 3gvc_A 107 LVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLS 161 (277)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 99876653321 1122333332 2344555555 4567776654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=2 Score=35.54 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=60.1
Q ss_pred CCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
..+|+=+|+|. ++..++ +.+. .|+++|.+++.++.+++. .+.++.+|+.+.. ...-...|+|++.
T Consensus 4 ~~~viIiG~Gr--~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGR--FGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSH--HHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCH--HHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHHHHhcCCCccCEEEEC
Confidence 45788888864 443333 3455 899999999999988753 4667899998843 1234568888863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. .......+....|.+.|...++...
T Consensus 76 ~~----------~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 76 ID----------DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp CS----------SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CC----------ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 21 1333444555666677887776643
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.58 Score=37.81 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCH---HHHHHHHHhhcCCCCcEEEEcccCCCCCCC------CCcccE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISS---VAIDMMKMKYEEIPQLKYLQMDVRDMSFFE------DESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~---~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~------~~~fD~ 76 (210)
..+||-+|+|. |..+..+++. |. +|+++|.++ +-.+.+++.- .+.+ | .+ . +. .+.+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~g-----a~~v--~-~~-~-~~~~~~~~~~~~d~ 249 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETK-----TNYY--N-SS-N-GYDKLKDSVGKFDV 249 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHT-----CEEE--E-CT-T-CSHHHHHHHCCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhC-----Ccee--c-hH-H-HHHHHHHhCCCCCE
Confidence 45799999832 4445555554 66 899999988 7777776532 2222 3 32 2 21 146999
Q ss_pred EEECCccchhccCCCchHHHHHHH-HHHHHhccCCcEEEEEEc
Q 028385 77 VIDKGTLDSLMCGTNAPISASQML-GEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l-~~i~r~LkpgG~~~~~~~ 118 (210)
|+...... ..+ +...+.|+++|.++++..
T Consensus 250 vid~~g~~-------------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 250 IIDATGAD-------------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEECCCCC-------------THHHHHHGGGEEEEEEEEECSC
T ss_pred EEECCCCh-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 99754321 135 788899999999877643
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.72 E-value=1.9 Score=33.18 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCC------------HHHHHHHHHhhc-CCCCcEEEEcccCCCCC----
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDIS------------SVAIDMMKMKYE-EIPQLKYLQMDVRDMSF---- 68 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s------------~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~---- 68 (210)
..+|=.|++.|. ++..+++.|. +|+.+|.+ ...++.+..... ...++.++.+|+.+...
T Consensus 11 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 89 (287)
T 3pxx_A 11 KVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRE 89 (287)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 357777776653 3344555676 89999987 555555544432 22578899999987430
Q ss_pred C-----CCCcccEEEECCccchhccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 69 F-----EDESFDAVIDKGTLDSLMCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~-----~~~~fD~Vi~~~~l~~~~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ .-+..|+++.+........ ..+.++ ...+++.+.+.|+.+|.++.++
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~-~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 90 LANAVAEFGKLDVVVANAGICPLGA-HLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCT-TCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCcCcccC-cCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 0 0136899998766532211 112222 2344566777778888887765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.15 Score=41.31 Aligned_cols=92 Identities=22% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||-+|+|. |..+..+++. +. +|+++|.+++-.+.+++.... . .++.. +...+... .+.+|+|+..-.-.
T Consensus 181 g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa-~--~vi~~~~~~~~~~~-~~g~D~vid~~g~~ 255 (357)
T 2cf5_A 181 GLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGA-D--DYVIGSDQAKMSEL-ADSLDYVIDTVPVH 255 (357)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCC-S--CEEETTCHHHHHHS-TTTEEEEEECCCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCC-c--eeeccccHHHHHHh-cCCCCEEEECCCCh
Confidence 34788899754 5666666665 65 899999998877777644321 1 11111 11111101 23699999753321
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++...++|+++|+++.+.
T Consensus 256 -------------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 256 -------------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp -------------CCSHHHHTTEEEEEEEEECS
T ss_pred -------------HHHHHHHHHhccCCEEEEeC
Confidence 12455678999999997754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.59 E-value=1 Score=35.21 Aligned_cols=109 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred CCEEEeCCCC--ch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPS--IV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~--G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
..+|=.|+++ |. ++..+++.|. +|+.+|.++...+...+.......+.++.+|+.+... + .-+..
T Consensus 31 k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (296)
T 3k31_A 31 KKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSL 109 (296)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3577788753 32 4555566677 7999999875544444333222457889999987430 0 01468
Q ss_pred cEEEECCccchh-----ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEEc
Q 028385 75 DAVIDKGTLDSL-----MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 75 D~Vi~~~~l~~~-----~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+++.+...... .+...+.++ ...+++.+.+.++.+|.++.++.
T Consensus 110 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 110 DFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 999988664321 011112222 23455667777788898877663
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.46 E-value=0.88 Score=36.59 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=55.9
Q ss_pred CCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
..+||-.|++ .|.....+++. |. +|++++.+++.++.+++.-. . .+. |..+.. ......+|+|
T Consensus 171 g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga--~--~~~--d~~~~~~~~~~~~~~~~~~~D~v 243 (351)
T 1yb5_A 171 GESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGA--H--EVF--NHREVNYIDKIKKYVGEKGIDII 243 (351)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC--S--EEE--ETTSTTHHHHHHHHHCTTCEEEE
T ss_pred cCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCC--C--EEE--eCCCchHHHHHHHHcCCCCcEEE
Confidence 3579999973 35555555554 55 89999999988887765321 1 112 222211 0123469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.... . ..+....++|+++|+++++.
T Consensus 244 i~~~G------------~--~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 244 IEMLA------------N--VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EESCH------------H--HHHHHHHHHEEEEEEEEECC
T ss_pred EECCC------------h--HHHHHHHHhccCCCEEEEEe
Confidence 87422 1 24677889999999987664
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.22 E-value=0.63 Score=36.88 Aligned_cols=89 Identities=16% Similarity=0.189 Sum_probs=54.9
Q ss_pred CEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-cc-CC-CCCCCCCcccEEEECCcc
Q 028385 10 DTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DV-RD-MSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 10 ~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~-~~-~~~~~~~~fD~Vi~~~~l 83 (210)
+||-+|+ |.|..+..+++. +. +|++++.+++-++.+++.-. . .++.. +. .+ ......+.+|+|+....-
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa--~--~~i~~~~~~~~~~~~~~~~~~d~vid~~g~ 226 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGA--K--EVLAREDVMAERIRPLDKQRWAAAVDPVGG 226 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTC--S--EEEECC---------CCSCCEEEEEECSTT
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC--c--EEEecCCcHHHHHHHhcCCcccEEEECCcH
Confidence 7999997 346777777765 54 89999999887787765321 1 11111 11 01 111233579999874221
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+....++|+++|+++++.
T Consensus 227 --------------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 227 --------------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp --------------TTHHHHHHTEEEEEEEEECS
T ss_pred --------------HHHHHHHHhhccCCEEEEEe
Confidence 13667788999999997654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.26 Score=39.93 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=55.2
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||-+|+|. |..+..+++. +. +|++++.++.-.+.+++.... . .++.. +...+... .+.+|+|+......
T Consensus 188 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa-~--~v~~~~~~~~~~~~-~~~~D~vid~~g~~ 262 (366)
T 1yqd_A 188 GKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGA-D--SFLVSRDQEQMQAA-AGTLDGIIDTVSAV 262 (366)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCC-S--EEEETTCHHHHHHT-TTCEEEEEECCSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCC-c--eEEeccCHHHHHHh-hCCCCEEEECCCcH
Confidence 34788899754 5566666665 55 899999999887777644421 1 12211 10011101 13699999753321
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .++...++|+++|+++.+..
T Consensus 263 ~-------------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 263 H-------------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp C-------------CSHHHHHHEEEEEEEEECCC
T ss_pred H-------------HHHHHHHHHhcCCEEEEEcc
Confidence 1 24456788999999876643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.08 E-value=1.3 Score=33.74 Aligned_cols=110 Identities=7% Similarity=-0.003 Sum_probs=64.7
Q ss_pred CCCCEEEeCCCCch---hHHHHHHcCCCcEEEE-eCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCC
Q 028385 7 GTRDTCRRAAPSIV---MSEDMVKDGYEDIVNI-DISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~---~~~~l~~~~~~~v~~v-D~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~ 72 (210)
....+|=.|++.|. ++..+++.|. +|+.+ +.++...+...+.... ..++.++.+|+.+... + .-+
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 33467888877663 3445555677 77777 6666666655554433 2578899999987430 0 013
Q ss_pred cccEEEECCccc-hh-ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLD-SL-MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~-~~-~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..|+++.+.... .. .+...+.++ ...+.+.+.+.++++|.++.++
T Consensus 86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 689999876432 11 111222222 2345566777777788877665
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.96 Score=34.35 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=62.1
Q ss_pred CCEEEeCCCCchhHHH----HHH-cCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC---CC------CCc
Q 028385 9 RDTCRRAAPSIVMSED----MVK-DGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---FE------DES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~----l~~-~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~---~~------~~~ 73 (210)
.+||=.|+. |.++.. |++ .+. +|+.++.++...+...+.... ..++.++.+|+.+... +- -+.
T Consensus 5 k~vlITGas-ggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 5 HVALVTGGN-KGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CEEEESSCS-SHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCC-cHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 456766654 444444 445 566 899999998766655544422 2568899999887430 00 136
Q ss_pred ccEEEECCccchhccCCCc-hHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLMCGTNA-PIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~-~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|+|+.+............ ..+ ...+++.+.+.++++|.++.++
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 8999987654321111111 122 2245566667777778877765
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.97 E-value=1.6 Score=33.15 Aligned_cols=110 Identities=9% Similarity=0.033 Sum_probs=64.5
Q ss_pred CCCCEEEeCCC-CchhH----HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCC
Q 028385 7 GTRDTCRRAAP-SIVMS----EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG-~G~~~----~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~ 72 (210)
...+||=.|++ +|.++ ..+++.+. +|+.++.+....+.+++......++.++.+|+.+... + .-+
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 91 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD 91 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34568888875 23333 44455576 8999988865444444333333558889999987430 0 124
Q ss_pred cccEEEECCccchh-----ccCC-CchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 73 SFDAVIDKGTLDSL-----MCGT-NAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~-----~~~~-~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
..|+++.+...... .+.. .+.++.. .+++.+.+.++++|.++.++
T Consensus 92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 92 SLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp CEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 68999987665321 0111 2223332 34566677777788887765
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.74 Score=36.85 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
..+||-.|++ -|..+..+++. |. +|++++.+++-.+.+++.-. -.+...+ .+.. ......+|+|+.
T Consensus 160 g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga----~~v~~~~-~~~~~~v~~~~~~~g~Dvvid 233 (342)
T 4eye_A 160 GETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGA----DIVLPLE-EGWAKAVREATGGAGVDMVVD 233 (342)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC----SEEEESS-TTHHHHHHHHTTTSCEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC----cEEecCc-hhHHHHHHHHhCCCCceEEEE
Confidence 4579999973 36677777765 55 89999999988888876432 1222222 2211 022347999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...- ..+....+.|+++|+++++.
T Consensus 234 ~~g~--------------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 234 PIGG--------------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp SCC----------------CHHHHHHTEEEEEEEEEC-
T ss_pred CCch--------------hHHHHHHHhhcCCCEEEEEE
Confidence 4331 14677888999999998764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.78 E-value=5.3 Score=33.43 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=57.2
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------------C--C--CCcEEEEcccCCCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------------E--I--PQLKYLQMDVRDMSFF 69 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-------------~--~--~~v~~~~~d~~~~~~~ 69 (210)
.+|.=||+|. +.++..+++.|. +|+.+|.+++.++.+++... . . ....+ ..|...+
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~--- 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL--- 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG---
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH---
Confidence 4688899986 344555556676 89999999998887765321 0 0 11222 3343222
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
...|+|+..-. + ...-...+++++...++++.+++.
T Consensus 113 --~~aDlVIeaVp-e-------~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 --STVDLVVEAVF-E-------DMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --TTCSEEEECCC-S-------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --CCCCEEEEcCC-C-------CHHHHHHHHHHHHhhCCCCeEEEe
Confidence 24688886432 1 113456788899999999887754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.72 E-value=2 Score=34.03 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=57.1
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
..+||-.|+ |.|.....+++. +. +|+++|.+++.++.+++.-. . ... |..+.. ......+|+|
T Consensus 146 g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~---~-~~~--d~~~~~~~~~i~~~~~~~~~d~v 218 (333)
T 1wly_A 146 GDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGC---H-HTI--NYSTQDFAEVVREITGGKGVDVV 218 (333)
T ss_dssp TCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC---C-EEE--ECCCHHHHHHHHHHhCCCCCeEE
Confidence 356899985 456666666665 55 89999999988888765321 1 112 222211 0113469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+....- ..++...++|+++|+++.+.
T Consensus 219 i~~~g~--------------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 219 YDSIGK--------------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EECSCT--------------TTHHHHHHTEEEEEEEEECC
T ss_pred EECCcH--------------HHHHHHHHhhccCCEEEEEe
Confidence 975321 34677889999999987664
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.33 Score=38.37 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=55.6
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+||-+|+|. |..+..+++. |. +|++++ +++-.+.+++.-. -.++ -| .... .+.+|+|+..-.
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa----~~v~-~d---~~~v-~~g~Dvv~d~~g-- 208 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGV----RHLY-RE---PSQV-TQKYFAIFDAVN-- 208 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTE----EEEE-SS---GGGC-CSCEEEEECC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCC----CEEE-cC---HHHh-CCCccEEEECCC--
Confidence 345799999954 7777777776 66 899999 8888888876432 1122 23 2213 567999986321
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ..+.+..++|+++|+++.+.
T Consensus 209 ----------~--~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 ----------S--QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp -----------------TTGGGEEEEEEEEEEC
T ss_pred ----------c--hhHHHHHHHhcCCCEEEEEe
Confidence 1 12356788999999997763
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=1.8 Score=34.77 Aligned_cols=90 Identities=10% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 8 TRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
..+||-.|++ .|.....+++. +. +|+++|.+++.++.+++.-. . ... |..+.. ......+|+|
T Consensus 163 g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~---~-~~~--~~~~~~~~~~~~~~~~~~~~d~v 235 (354)
T 2j8z_A 163 GDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGA---A-AGF--NYKKEDFSEATLKFTKGAGVNLI 235 (354)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTC---S-EEE--ETTTSCHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC---c-EEE--ecCChHHHHHHHHHhcCCCceEE
Confidence 3468888853 35555555554 55 89999999998888854321 1 112 222111 0123469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+....- ..+....++|+++|.++++..
T Consensus 236 i~~~G~--------------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 236 LDCIGG--------------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EESSCG--------------GGHHHHHHHEEEEEEEEECCC
T ss_pred EECCCc--------------hHHHHHHHhccCCCEEEEEec
Confidence 975431 135667889999999977643
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.58 E-value=3.1 Score=30.72 Aligned_cols=90 Identities=9% Similarity=-0.073 Sum_probs=55.8
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
++|+=+|+ |.++..+++ .+. +|+.+|.+++.++...+. .++.++.+|..+.. ...-...|+|++..
T Consensus 1 M~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~----~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 1 MKVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK----LKATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CCEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH----SSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH----cCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 35777776 556655554 355 899999999988765543 24678999988732 11234689888642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
.- ......+....+.+.+...++.
T Consensus 74 ~~----------d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 74 PR----------DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp SC----------HHHHHHHHHHHHHTSCCCEEEE
T ss_pred CC----------cHHHHHHHHHHHHHcCCCeEEE
Confidence 21 2334445555555556666544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=89.47 E-value=4.4 Score=28.87 Aligned_cols=94 Identities=12% Similarity=-0.005 Sum_probs=54.8
Q ss_pred CCCEEEeCCCC-ch-hHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CC-CCCcccEEEEC
Q 028385 8 TRDTCRRAAPS-IV-MSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FF-EDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~-G~-~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~-~~~~fD~Vi~~ 80 (210)
..+|+=+|+|. |. ++..+.+. +. +|+++|.+++.++.+++. .+.++.+|..+.. .. .-+.+|+|+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-----GRNVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-----TCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-----CCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 45799998764 32 22333444 55 899999999888776642 3556777765521 12 23468988863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..- ......+-...+.+.|++.++...
T Consensus 113 ~~~----------~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 113 MPH----------HQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp CSS----------HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCC----------hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 221 122222333455566777776554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.45 E-value=3.6 Score=27.87 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=44.3
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
.+|+=+|+|. ++..+ .+.+. +|+++|.+++.++.+++. .+.++.+|..+.. ...-..+|+|+..
T Consensus 7 ~~v~I~G~G~--iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 7 YEYIVIGSEA--AGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CEEEEECCCH--HHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 4799999864 44444 34466 899999999988877653 4678888887732 1223568988864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.17 E-value=1.3 Score=35.46 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=56.9
Q ss_pred CCCEEEeC-CCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC----CCCCCCcccEEEEC
Q 028385 8 TRDTCRRA-APS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiG-cG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~ 80 (210)
..+||=+| +|. |..+..+++. |. +|+++|.++.-++.+++.-.. .++..+ .+. .....+.+|+|+..
T Consensus 151 g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~vi~~~-~~~~~~~~~~~~~g~Dvv~d~ 224 (346)
T 3fbg_A 151 GKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGAD----IVLNHK-ESLLNQFKTQGIELVDYVFCT 224 (346)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCS----EEECTT-SCHHHHHHHHTCCCEEEEEES
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc----EEEECC-ccHHHHHHHhCCCCccEEEEC
Confidence 34688884 443 6666666665 55 899999999988888874321 111111 111 01223579999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.. ....++...++|+++|+++.+
T Consensus 225 ~g-------------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 225 FN-------------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp SC-------------HHHHHHHHHHHEEEEEEEEES
T ss_pred CC-------------chHHHHHHHHHhccCCEEEEE
Confidence 22 234567888999999999654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=1.5 Score=35.38 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=58.3
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
..+||-.|+ |.|..+..+++. +. +|++++.+++-++.+++.-. . .++..+-.+.. ....+.+|+|+..
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga--~--~~~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGC--D--RPINYKTEPVGTVLKQEYPEGVDVVYES 238 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC--S--EEEETTTSCHHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCC--c--EEEecCChhHHHHHHHhcCCCCCEEEEC
Confidence 357899993 457777777775 55 89999999988888876321 1 12221111110 0113469999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. . ..++.+.++|+++|+++++.
T Consensus 239 ~g------------~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 239 VG------------G--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp SC------------T--HHHHHHHHHEEEEEEEEECC
T ss_pred CC------------H--HHHHHHHHHHhcCCEEEEEe
Confidence 32 1 35778889999999987654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.96 E-value=0.18 Score=38.99 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred cEEEEcccCC-CCCCCCCcccEEEECCccchhc--cCCC-ch----HHHHHHHHHHHHhccCCcEEEEEE
Q 028385 56 LKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM--CGTN-AP----ISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 56 v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~--~~~~-~~----~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++++|..+ +..+++++||+|+....+.--. +... .. .-....+.++.++|||||.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3567777654 2224567899999876643110 0000 11 245677888999999999987653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=1.9 Score=34.26 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=56.8
Q ss_pred CCCEEEeCCCCc-hhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC-----CCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSI-VMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G-~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~fD~Vi~~ 80 (210)
..+||=+|+|.+ .++..+++ .+..+|+++|.+++-++.+++.-.. .++...-.+. .......+|.++..
T Consensus 164 g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~----~~i~~~~~~~~~~v~~~t~g~g~d~~~~~ 239 (348)
T 4eez_A 164 GDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD----VTINSGDVNPVDEIKKITGGLGVQSAIVC 239 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS----EEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred CCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe----EEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence 346888999863 44444444 3556899999999988887765422 1221111111 00123457777653
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.. -...+....+.|+++|.+++...
T Consensus 240 ~~-------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 240 AV-------------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp CS-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred cc-------------CcchhheeheeecCCceEEEEec
Confidence 22 23457778899999999877643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.83 E-value=2.1 Score=32.64 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCC----CC-----CCc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSF----FE-----DES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~----~~-----~~~ 73 (210)
..+|=.|++.|. ++..+++.|. +|+.++.++...+...+.... ..++.++.+|+.+... +. -+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (267)
T 2gdz_A 8 KVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 86 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 467888876552 3344455576 899999998776655444432 1357888999887420 00 135
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+++.+...
T Consensus 87 id~lv~~Ag~ 96 (267)
T 2gdz_A 87 LDILVNNAGV 96 (267)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 7999987653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.66 E-value=5.4 Score=29.85 Aligned_cols=74 Identities=7% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-CCCcccEEE
Q 028385 7 GTRDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-EDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-~~~~fD~Vi 78 (210)
...+||=.|++.|. ++..+++.|. +|+.++.++..++...+... .++.+..+|+.+... + .-+..|+++
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~id~li 89 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK--DNYTIEVCNLANKEECSNLISKTSNLDILV 89 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--SSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc--cCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence 34467877776652 3344455676 89999999988777666553 367888899877420 0 124689999
Q ss_pred ECCcc
Q 028385 79 DKGTL 83 (210)
Q Consensus 79 ~~~~l 83 (210)
.+...
T Consensus 90 ~~Ag~ 94 (249)
T 3f9i_A 90 CNAGI 94 (249)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 87654
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=4 Score=38.94 Aligned_cols=77 Identities=12% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC------------C--CCC-
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------S--FFE- 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~------------~--~~~- 70 (210)
...+++|+-||.|.++.-+.+.|. ..+.++|+++.+++.-+.+. ++..+...|+.++ . .++
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~---p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~ 926 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN---PGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQ 926 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC---TTSEEECSCHHHHHHHHTTTCSBCSSCCBCCC
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC---CCCcEeeccHHHHhHhhhccchhhhhhhhccc
Confidence 456799999999999999988886 46899999999999887776 4455666554311 0 022
Q ss_pred CCcccEEEECCccchh
Q 028385 71 DESFDAVIDKGTLDSL 86 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~ 86 (210)
.+.+|+|+....-..+
T Consensus 927 ~~~vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 927 KGDVEMLCGGPPCQGF 942 (1330)
T ss_dssp TTTCSEEEECCCCTTT
T ss_pred cCccceEEecCCCccc
Confidence 3468999987665544
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.33 E-value=2.8 Score=32.59 Aligned_cols=105 Identities=14% Similarity=0.072 Sum_probs=67.4
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcccEE
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFDAV 77 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~fD~V 77 (210)
.+|=-|++.|. .+..|++.|. +|+.+|.+++.++.+.+... .++.++.+|+.+... -.-+..|++
T Consensus 31 valVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 107 (273)
T 4fgs_A 31 IAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKAEAGRIDVL 107 (273)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 35666776663 3445556677 89999999998887766653 456788899887430 012568999
Q ss_pred EECCccchh-ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSL-MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~-~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+.+...... .+.+-+.++ ...+.+.+.+.|+.+|.++.+.
T Consensus 108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 988654322 122223333 3345677788888888876654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.32 E-value=3.1 Score=34.67 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCCCEEEeCC-C-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC------------------
Q 028385 7 GTRDTCRRAA-P-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------------ 66 (210)
Q Consensus 7 ~~~~vLdiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~------------------ 66 (210)
...+||=+|+ | -|.++..+++....++++++.++.-++.+++.-.. .++...-.+.
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~----~vi~~~~~d~~~~~~~~~~~~~~~~~~~ 303 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAE----AIIDRNAEGYRFWKDENTQDPKEWKRFG 303 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCC----EEEETTTTTCCSEEETTEECHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCc----EEEecCcCcccccccccccchHHHHHHH
Confidence 3346898987 3 36777777776334899999999988888764321 1121111100
Q ss_pred ---CC-CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 67 ---SF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 67 ---~~-~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. .....+|+|+..-. . ..+....++|++||.++++.
T Consensus 304 ~~i~~~t~g~g~Dvvid~~G------------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 304 KRIRELTGGEDIDIVFEHPG------------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHTSCCEEEEEECSC------------H--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHhCCCCCcEEEEcCC------------c--hhHHHHHHHhhCCcEEEEEe
Confidence 00 12357999987322 1 45777888999999997754
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.10 E-value=6.4 Score=29.07 Aligned_cols=71 Identities=11% Similarity=-0.007 Sum_probs=47.7
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEEC
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVIDK 80 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~~ 80 (210)
.||=.|++.|. ++..+++.|. +|+.++.++..++...+... .++.++.+|+.+.. ..-.+.+|+++.+
T Consensus 3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~ 79 (230)
T 3guy_A 3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLS--NNVGYRARDLASHQEVEQLFEQLDSIPSTVVHS 79 (230)
T ss_dssp CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCS--SCCCEEECCTTCHHHHHHHHHSCSSCCSEEEEC
T ss_pred EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh--hccCeEeecCCCHHHHHHHHHHHhhcCCEEEEe
Confidence 46777876653 3344455676 79999999988877666542 46788999988743 0123345999887
Q ss_pred Ccc
Q 028385 81 GTL 83 (210)
Q Consensus 81 ~~l 83 (210)
...
T Consensus 80 Ag~ 82 (230)
T 3guy_A 80 AGS 82 (230)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=1.6 Score=34.97 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=56.1
Q ss_pred CCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEE
Q 028385 9 RDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~ 79 (210)
.+||-.|++ -|.....+++. |..+|+++|.+++-++.+++.... . .+ .|..+.. ....+.+|+|+.
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~-~--~~--~d~~~~~~~~~~~~~~~~~~d~vi~ 236 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGF-D--AA--INYKKDNVAEQLRESCPAGVDVYFD 236 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCC-S--EE--EETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-c--eE--EecCchHHHHHHHHhcCCCCCEEEE
Confidence 578989973 35555555554 544899999999888877653321 1 11 2222211 011226999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
... ...++...++|+++|+++++.
T Consensus 237 ~~G--------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 237 NVG--------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp SCC--------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCC--------------HHHHHHHHHHhccCcEEEEEC
Confidence 432 145778889999999987654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=87.66 E-value=0.9 Score=36.03 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCEEEeCC-C-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-cc--CCCCCCCCCcccEEEECCc
Q 028385 9 RDTCRRAA-P-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DV--RDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 9 ~~vLdiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~--~~~~~~~~~~fD~Vi~~~~ 82 (210)
.+||-.|+ | -|..+..+++. +. ++++++.+++-++.+++.-. . .++.. +. ........+.+|+|+....
T Consensus 152 ~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa--~--~v~~~~~~~~~~~~~~~~~~~d~vid~~g 226 (330)
T 1tt7_A 152 GSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA--S--EVISREDVYDGTLKALSKQQWQGAVDPVG 226 (330)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC--S--EEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred ceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC--c--EEEECCCchHHHHHHhhcCCccEEEECCc
Confidence 37999997 3 36666666665 65 79999999877777765321 1 11211 11 1111123457999986422
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. ..+....++|++||+++++..
T Consensus 227 ------------~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 227 ------------G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp ------------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred ------------H--HHHHHHHHhhcCCCEEEEEec
Confidence 1 247788899999999977643
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=87.59 E-value=5.2 Score=31.01 Aligned_cols=93 Identities=12% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE--------cccCCCCCCCC--CcccE
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ--------MDVRDMSFFED--ESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~--------~d~~~~~~~~~--~~fD~ 76 (210)
++|.=||+|. +.++..+++.+. +|+.+|.+++.++..++.. +.... .+..+...... ...|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNG-----LIADFNGEEVVANLPIFSPEEIDHQNEQVDL 77 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHC-----EEEEETTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCC-----EEEEeCCCeeEecceeecchhhcccCCCCCE
Confidence 5788899875 234444555566 8999999998877766542 11111 00111110111 26899
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+..-. ......+++++...++++..++.+.
T Consensus 78 vi~~v~----------~~~~~~v~~~l~~~l~~~~~iv~~~ 108 (316)
T 2ew2_A 78 IIALTK----------AQQLDAMFKAIQPMITEKTYVLCLL 108 (316)
T ss_dssp EEECSC----------HHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred EEEEec----------cccHHHHHHHHHHhcCCCCEEEEec
Confidence 886422 2456778888888898887765543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=87.43 E-value=4.7 Score=31.14 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=53.2
Q ss_pred CCEEEeCC-CC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAA-PS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGc-G~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
++|.=||+ |. +.++..+.+.+. +|+++|.++..++.+.+. .+.+ .+..+ .-...|+|+..-
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~-----g~~~--~~~~~----~~~~aDvVi~av---- 75 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGM-----GIPL--TDGDG----WIDEADVVVLAL---- 75 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHT-----TCCC--CCSSG----GGGTCSEEEECS----
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhc-----CCCc--CCHHH----HhcCCCEEEEcC----
Confidence 47899998 75 344455556666 899999999887766552 1211 12211 113579998642
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+......+++++...+++|..++
T Consensus 76 ------~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 76 ------PDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ------CchHHHHHHHHHHHhCCCCCEEE
Confidence 22446778888888888887553
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.40 E-value=4.8 Score=26.84 Aligned_cols=91 Identities=13% Similarity=-0.013 Sum_probs=52.6
Q ss_pred CCCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
.++|+=+|+| .++..+ .+.+. +|+.+|.++..++..++.. ++.++.+|..+.. ...-...|+|+..
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 3578888875 444444 34455 8999999998777665432 3556777765421 0113468988865
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-.- ......+..+.+.+.++ .++..
T Consensus 77 ~~~----------~~~~~~~~~~~~~~~~~-~ii~~ 101 (140)
T 1lss_A 77 TGK----------EEVNLMSSLLAKSYGIN-KTIAR 101 (140)
T ss_dssp CSC----------HHHHHHHHHHHHHTTCC-CEEEE
T ss_pred eCC----------chHHHHHHHHHHHcCCC-EEEEE
Confidence 321 22233455556667775 44333
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=87.15 E-value=5.6 Score=27.39 Aligned_cols=94 Identities=9% Similarity=0.024 Sum_probs=55.8
Q ss_pred CCCEEEeCCCCchhHHHHHH----cCCCcEEEEeCC-HHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVK----DGYEDIVNIDIS-SVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s-~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
..+|+=+|+ |..+..+++ .+. +|+.+|.+ ++..+...+... ..+.++.+|..+.. ...-+..|+|++
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 457888876 555555443 455 89999997 454444443322 35788999987632 012346888886
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...- ......+....+.+.|...++..
T Consensus 78 ~~~~----------d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 78 LSDN----------DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp CSSC----------HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred ecCC----------hHHHHHHHHHHHHHCCCCEEEEE
Confidence 4221 23345555666666677666543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=87.11 E-value=4.4 Score=30.68 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=48.8
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
.++|=.|++.| .++..+++.|. +|+.+|.++...+...+... .++.++.+|+.+... + .-+..|+
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 85 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI 85 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45787887655 33445556676 89999999887776665553 457889999887430 0 1236899
Q ss_pred EEECCcc
Q 028385 77 VIDKGTL 83 (210)
Q Consensus 77 Vi~~~~l 83 (210)
++.+...
T Consensus 86 lv~~Ag~ 92 (259)
T 4e6p_A 86 LVNNAAL 92 (259)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9987654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.87 E-value=2.3 Score=33.55 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCCEEEeC-CCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRA-APS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiG-cG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+||=+| +|. |..+..+++.-..+|++++ ++.-.+.+++.-. + .++..+-.+ .. -.-..+|+|+..-.
T Consensus 153 g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa--~--~~i~~~~~~~~~-~~~~g~D~v~d~~g-- 224 (321)
T 3tqh_A 153 GDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA--E--QCINYHEEDFLL-AISTPVDAVIDLVG-- 224 (321)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC--S--EEEETTTSCHHH-HCCSCEEEEEESSC--
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC--C--EEEeCCCcchhh-hhccCCCEEEECCC--
Confidence 34688886 543 7777777776333899888 5554676665422 1 222222111 11 11146999987422
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. . .+....++|+++|+++.+.
T Consensus 225 ----------~-~-~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 225 ----------G-D-VGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp ----------H-H-HHHHHGGGEEEEEEEEECC
T ss_pred ----------c-H-HHHHHHHhccCCCEEEEeC
Confidence 1 1 2377889999999997653
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.84 E-value=0.23 Score=34.44 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
++.++||.|+.-..-+. ....-..+++..+.+.|||||.|..
T Consensus 55 Lp~stYD~V~~lt~~~~-----~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 55 LENAKYETVHYLTPEAQ-----TDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCSSSCCSEEEECCCSS-----CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred CCcccccEEEEecCCcc-----chhhcCHHHHHHHHHHhCCCCEEEe
Confidence 78999999986322210 0112238899999999999999975
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=86.63 E-value=3.4 Score=30.04 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
++||=.|+ +|.++..+ ++.+. +|++++.++..+.... ++++++.+|+.+...-.-..+|+|+......
T Consensus 1 MkvlVtGa-tG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGA-TGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH------KDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC------SSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcC-CchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc------CCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 35777775 44444444 44565 8999999976544322 5789999999875410113579999765442
Q ss_pred hhccCCCchHHHHHHHHHHHHhccC--CcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKP--GGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~Lkp--gG~~~~~~ 117 (210)
.- ..........++.+.++. .+++++++
T Consensus 73 ~~-----~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 73 PD-----EAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp TT-----TTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred cc-----ccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 11 112222334444444443 35666654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=86.54 E-value=5.2 Score=33.40 Aligned_cols=103 Identities=10% Similarity=0.030 Sum_probs=58.0
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------------CCCcEEEEcccCCCCCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------------IPQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~v~~~~~d~~~~~~~~~ 71 (210)
++|.=||+|. ..++..+++.|. +|+++|.+++.++..++.... ..++.+ ..|..+. -
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea----~ 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA----V 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH----G
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH----H
Confidence 5788888875 234444555676 899999999988877663211 012222 1222211 1
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...|+|+..-.-..-..+.........+++.+.+.|++|-.++..+
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 2468877632111000011122367788899999999887665544
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=86.15 E-value=7.2 Score=29.79 Aligned_cols=85 Identities=8% Similarity=0.025 Sum_probs=52.4
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|.=||||. +.++..+.+.+. +|+++|.+++.++.+.+.- .. .. ...|... . ...|+|+..-
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g--~~-~~-~~~~~~~---~--~~~D~vi~av------ 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ--LV-DE-AGQDLSL---L--QTAKIIFLCT------ 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT--SC-SE-EESCGGG---G--TTCSEEEECS------
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCC--CC-cc-ccCCHHH---h--CCCCEEEEEC------
Confidence 577788875 234444555566 8999999998877765321 11 11 1222221 2 4679988642
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+......+++++...++++..++
T Consensus 66 ----~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 66 ----PIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp ----CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ----CHHHHHHHHHHHHhhCCCCCEEE
Confidence 22456778888888888887664
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=4.9 Score=31.15 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~-~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
..+|=.|++.|. ++..+++.|. +|+.++.++. ..+...+..+. ..++.++.+|+.+... + .-+..
T Consensus 48 k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 126 (291)
T 3ijr_A 48 KNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSL 126 (291)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 357878876653 3344555676 8999998764 33333333322 2578899999987430 0 01368
Q ss_pred cEEEECCccchh--ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSL--MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~--~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+...... .....+.++ ...+++.+.+.|+.+|.++.++
T Consensus 127 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 127 NILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp CEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 999987543211 011112222 2345667777888889887765
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.92 E-value=9.2 Score=29.32 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=62.6
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CCCcccE
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----EDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~~~fD~ 76 (210)
..+|=.|++.|. ++..+++.|. +|+.+|.++..++...+... .++.++.+|+.+... + .-+..|+
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 104 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIG--SKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV 104 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 357777876653 3444555676 89999999887776655442 467888999887430 0 0136899
Q ss_pred EEECCccchhc-cCCCchHHHH-----------HHHHHHHHhccC--CcEEEEEE
Q 028385 77 VIDKGTLDSLM-CGTNAPISAS-----------QMLGEVSRLLKP--GGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~-~~~~~~~~~~-----------~~l~~i~r~Lkp--gG~~~~~~ 117 (210)
++.+....... +...+.++.. .+.+.+.+.++. +|.++.++
T Consensus 105 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~is 159 (277)
T 4dqx_A 105 LVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTT 159 (277)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEEC
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 99876643221 1122233333 334455566644 46776654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=85.91 E-value=0.53 Score=36.91 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCCEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEccc-CCCC-CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV-RDMS-FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~-~~~~-~~~~~~fD~Vi~~~~ 82 (210)
..+||-+|+ |.|..+..+++. +. +|+++|.++...+.+++.-. . .++..+- .+.. .. +.+|+|+. ..
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga--~--~~~~~~~~~~~~~~~--~~~d~vid-~g 197 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGA--E--EAATYAEVPERAKAW--GGLDLVLE-VR 197 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTC--S--EEEEGGGHHHHHHHT--TSEEEEEE-CS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCC--C--EEEECCcchhHHHHh--cCceEEEE-CC
Confidence 357999997 336666666665 55 89999999888877765321 1 1222111 1111 02 46999986 33
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
- ..++...++|+++|+++.+.
T Consensus 198 ~--------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 198 G--------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp C--------------TTHHHHHTTEEEEEEEEEC-
T ss_pred H--------------HHHHHHHHhhccCCEEEEEe
Confidence 1 13677889999999987654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=6.1 Score=30.52 Aligned_cols=95 Identities=15% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----------C---------CCcEEEEcccCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----------I---------PQLKYLQMDVRDM 66 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~---------~~v~~~~~d~~~~ 66 (210)
.+|.=||+|+ +.++..+++.+. +|+..|.+++.++.+++.... . .++.+ ..|..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 4677888875 334444555676 899999999998888765210 0 11222 2232221
Q ss_pred CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 67 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 67 ~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-...|+|+..-.- .......+++++...++++..++..+
T Consensus 83 ----~~~aDlVi~av~~--------~~~~~~~v~~~l~~~~~~~~il~s~t 121 (283)
T 4e12_A 83 ----VKDADLVIEAVPE--------SLDLKRDIYTKLGELAPAKTIFATNS 121 (283)
T ss_dssp ----TTTCSEEEECCCS--------CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ----hccCCEEEEeccC--------cHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1346988864221 12466788899999999988764333
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=85.41 E-value=7.9 Score=28.15 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred CEEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+||=.|+ +|.++..++ +.+. +|++++.++..+.... ..+++++.+|+.+.....-+.+|+|+......+
T Consensus 2 kilVtGa-tG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 74 (224)
T 3h2s_A 2 KIAVLGA-TGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRL-----GATVATLVKEPLVLTEADLDSVDAVVDALSVPW 74 (224)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHT-----CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred EEEEEcC-CCHHHHHHHHHHHHCCC-EEEEEEeccccccccc-----CCCceEEecccccccHhhcccCCEEEECCccCC
Confidence 5777775 455554444 4466 8999999987654321 157899999998754101135799998665421
Q ss_pred hccCCCchHHHHHHHHHHHHhccC-CcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKP-GGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkp-gG~~~~~~ 117 (210)
.......-.....++.+.++. |+++++++
T Consensus 75 ---~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 75 ---GSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp ---TSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred ---CcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 111122333444556666543 46666654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.16 E-value=2.2 Score=32.37 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeC-CHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC-----CCc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDI-SSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE-----DES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~-s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~-----~~~ 73 (210)
.+||=.|++ |.++..+ ++.|. +|+.++. ++...+...+.... ..++.++.+|+.+... +. -+.
T Consensus 22 k~vlItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 99 (274)
T 1ja9_A 22 KVALTTGAG-RGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG 99 (274)
T ss_dssp CEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357767754 4444444 44566 8999998 77666554443321 2567889999887430 10 136
Q ss_pred ccEEEECCccchhc-cCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSLM-CGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~~-~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
.|+|+.+....... ....+.++.. .+++.+.+.++.+|.++.++
T Consensus 100 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~s 155 (274)
T 1ja9_A 100 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 155 (274)
T ss_dssp EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEc
Confidence 89998765432210 0011222222 33444455665568877654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=85.15 E-value=3 Score=33.01 Aligned_cols=102 Identities=6% Similarity=0.055 Sum_probs=57.8
Q ss_pred CCCCCEEEeCCCCchhHHHHH----HcCCCcEEEEeCCH----HHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMV----KDGYEDIVNIDISS----VAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDES 73 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~ 73 (210)
+...+||=.|+ +|.++..++ +.+. +|++++.++ ...+....... .+++++.+|+.+.. .+....
T Consensus 8 M~~~~IlVtGa-tG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~--~~v~~~~~Dl~d~~~l~~~~~~~~ 83 (346)
T 3i6i_A 8 SPKGRVLIAGA-TGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALED--KGAIIVYGLINEQEAMEKILKEHE 83 (346)
T ss_dssp ---CCEEEECT-TSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHH--TTCEEEECCTTCHHHHHHHHHHTT
T ss_pred CCCCeEEEECC-CcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHh--CCcEEEEeecCCHHHHHHHHhhCC
Confidence 34468998886 555555554 4465 899998865 33332222111 56899999998743 122236
Q ss_pred ccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 74 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 74 fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.|+|+.......+ .....+++.+.+. ..-.+++...++
T Consensus 84 ~d~Vi~~a~~~n~-------~~~~~l~~aa~~~-g~v~~~v~S~~g 121 (346)
T 3i6i_A 84 IDIVVSTVGGESI-------LDQIALVKAMKAV-GTIKRFLPSEFG 121 (346)
T ss_dssp CCEEEECCCGGGG-------GGHHHHHHHHHHH-CCCSEEECSCCS
T ss_pred CCEEEECCchhhH-------HHHHHHHHHHHHc-CCceEEeecccC
Confidence 8999987665444 4445555555443 112356554444
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.10 E-value=4.1 Score=33.69 Aligned_cols=93 Identities=13% Similarity=-0.014 Sum_probs=56.9
Q ss_pred CCCCEEEeCC-C-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC------------------
Q 028385 7 GTRDTCRRAA-P-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------------ 66 (210)
Q Consensus 7 ~~~~vLdiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~------------------ 66 (210)
...+||=.|+ | -|..+..+++....++++++.++.-++.+++.-.. . ++...-.+.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~---~-~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCD---L-VINRAELGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC---C-EEEHHHHTCCTTGGGCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC---E-EEecccccccccccccccccchhhhHH
Confidence 3456898987 3 36666666665334899999999988888653221 1 111110110
Q ss_pred ----CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 67 ----SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 67 ----~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.......+|+|+.... . ..++...++|++||.++.+.
T Consensus 296 ~~~v~~~~g~g~Dvvid~~G------------~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHTG------------R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHSSCCSEEEECSC------------H--HHHHHHHHHSCTTCEEEESC
T ss_pred HHHHHHHhCCCceEEEECCC------------c--hHHHHHHHHHhcCCEEEEEe
Confidence 0001346999997432 1 24677788999999997754
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=84.98 E-value=1.6 Score=33.18 Aligned_cols=106 Identities=9% Similarity=0.037 Sum_probs=58.9
Q ss_pred CCCEEEeCCC-CchhHHH----HHHcCCCcEEEEeCCHH---HHHHHHHhhcCCCCcEEEEcccCCCCC----CC-----
Q 028385 8 TRDTCRRAAP-SIVMSED----MVKDGYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMSF----FE----- 70 (210)
Q Consensus 8 ~~~vLdiGcG-~G~~~~~----l~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~~v~~~~~d~~~~~~----~~----- 70 (210)
..++|=.|++ +|.++.. +++.|. +|+.++.++. .++...+.. ..+.++.+|+.+... +.
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3468888876 2444444 444576 7999998875 222222222 347888999887430 00
Q ss_pred CCcccEEEECCccchh-----ccCCCchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 71 DESFDAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~-----~~~~~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+..|+++.+...... .+...+.++.. .+++.+.+.++.+|.++.++
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 146 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1368999987654321 01111223332 34455556666578877765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.96 E-value=12 Score=30.29 Aligned_cols=95 Identities=11% Similarity=-0.011 Sum_probs=62.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCC--CcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIP--QLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~--~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+||.++.+.|.++..++.. .++.+.-|-......+.+.. ..+ ++++... +. -....||+|+....
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~----~~-~~~~~~~~v~~~lp- 109 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS----TA-DYPQQPGVVLIKVP- 109 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET----TS-CCCSSCSEEEEECC-
T ss_pred CCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc----cc-ccccCCCEEEEEcC-
Confidence 358999999999999888654 34455335444444444442 222 3555422 22 23467999986433
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+........+.++...|++|+.+++..-
T Consensus 110 -------k~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 110 -------KTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp -------SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred -------CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 3447788899999999999999977653
|
| >3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus} | Back alignment and structure |
|---|
Probab=84.90 E-value=4.2 Score=31.60 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=37.0
Q ss_pred CcccEEEEC----CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhhHhhh
Q 028385 72 ESFDAVIDK----GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 128 (210)
Q Consensus 72 ~~fD~Vi~~----~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~~~~~ 128 (210)
+.||+|+.+ +-.||..-+++.-....-+-....+.|+|||.+++..|+-.+...+.+
T Consensus 210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~v 270 (324)
T 3trk_A 210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERV 270 (324)
T ss_dssp CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHH
T ss_pred CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHH
Confidence 789999986 334444111111134555667778899999999999998655444433
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=84.83 E-value=5.2 Score=31.22 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
++|.=||+|. +.++..+++.+. +|++.|.+++.++.+.+.- ......+..+. -...|+|+..-.-
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g-----~~~~~~~~~e~----~~~aDvvi~~vp~--- 74 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEG-----ACGAAASAREF----AGVVDALVILVVN--- 74 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-----CSEEESSSTTT----TTTCSEEEECCSS---
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC-----CccccCCHHHH----HhcCCEEEEECCC---
Confidence 5788888875 334445555676 8999999998887766541 22223333332 1346988864221
Q ss_pred ccCCCchHHHHHHH---HHHHHhccCCcEEEEEEcCCch
Q 028385 87 MCGTNAPISASQML---GEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 87 ~~~~~~~~~~~~~l---~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
......++ +++...+++|..++-.+-..|.
T Consensus 75 ------~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~ 107 (303)
T 3g0o_A 75 ------AAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSA 107 (303)
T ss_dssp ------HHHHHHHHC--CCCGGGSCTTCEEEECSCCCHH
T ss_pred ------HHHHHHHHhChhhHHhhCCCCCEEEecCCCCHH
Confidence 12344555 6667788888877544433443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.71 E-value=2.5 Score=32.97 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=57.5
Q ss_pred CCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|.=||+|. | .++..+++.+. +|++.|.+++.++.+.+. .+.+ ..|..+.. . .|+|+..-.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~-----g~~~-~~~~~~~~----~-aDvvi~~vp--- 79 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEA-----GATL-ADSVADVA----A-ADLIHITVL--- 79 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHT-----TCEE-CSSHHHHT----T-SSEEEECCS---
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC-----CCEE-cCCHHHHH----h-CCEEEEECC---
Confidence 35799999876 3 34444445566 899999999877766543 2222 12222221 2 698886422
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.......+++++...+++|..++-.+-..|.
T Consensus 80 ------~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~ 110 (296)
T 3qha_A 80 ------DDAQVREVVGELAGHAKPGTVIAIHSTISDT 110 (296)
T ss_dssp ------SHHHHHHHHHHHHTTCCTTCEEEECSCCCHH
T ss_pred ------ChHHHHHHHHHHHHhcCCCCEEEEeCCCCHH
Confidence 1235567788899999988877554433444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.56 Score=38.16 Aligned_cols=98 Identities=9% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
..+|+=+|+| ..+..+++ .|. +|+++|.++..++.+++.... .+.....+..++. -.-...|+|+.....
T Consensus 166 ~~~V~ViGaG--~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~l~-~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 166 PASVVILGGG--TVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGG--RVITLTATEANIK-KSVQHADLLIGAVLV 239 (369)
T ss_dssp CCEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SEEEEECCHHHHH-HHHHHCSEEEECCC-
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCc--eEEEecCCHHHHH-HHHhCCCEEEECCCC
Confidence 3578999985 44433332 365 899999999888777654321 1211111111111 001258999875432
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
... ....-+.++..+.||+||.++.+..
T Consensus 240 ~~~-------~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGA-------KAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp -------------CCSCHHHHTTSCTTCEEEECC-
T ss_pred Ccc-------ccchhHHHHHHHhhcCCCEEEEEec
Confidence 210 1111124667788899998866543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.34 E-value=2.4 Score=33.93 Aligned_cols=91 Identities=9% Similarity=0.052 Sum_probs=56.6
Q ss_pred CCCEEEeCC-C-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 8 TRDTCRRAA-P-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGc-G-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
..+||-.|+ | -|..+..+++. |. +|+++|.+++-++.+++.-.. .++..+-.+.. ....+.+|+|+..
T Consensus 168 g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~~~~~~~~~~~~~~~~~~~~g~Dvvid~ 242 (353)
T 4dup_A 168 GESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAK----RGINYRSEDFAAVIKAETGQGVDIILDM 242 (353)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC----EEEeCCchHHHHHHHHHhCCCceEEEEC
Confidence 346888853 2 36666666665 55 899999999998888764321 12221111110 0113569999975
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..- ..+....+.|+++|.++.+.
T Consensus 243 ~g~--------------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 243 IGA--------------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp CCG--------------GGHHHHHHTEEEEEEEEECC
T ss_pred CCH--------------HHHHHHHHHhccCCEEEEEE
Confidence 331 14667788999999987764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.30 E-value=6.3 Score=30.17 Aligned_cols=108 Identities=11% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhc-CCCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYE-EIPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
..+|=.|++.|. ++..+++.|. +|+.++.. ....+...+... ...++.++.+|+.+... + .-+..
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 110 (271)
T 3v2g_A 32 KTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGL 110 (271)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 457878877653 3445556676 78888654 454444444332 22568889999887430 0 01368
Q ss_pred cEEEECCccchhc-cCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLM-CGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~-~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+....... +...+.++ ...+++.+.+.|+++|.++.++
T Consensus 111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 111 DILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 9999876542210 11112222 3345677778888889887764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=84.17 E-value=3.1 Score=35.10 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CC-------------cEEEEcccCCCCC
Q 028385 6 TGTRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQ-------------LKYLQMDVRDMSF 68 (210)
Q Consensus 6 ~~~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~-------------v~~~~~d~~~~~~ 68 (210)
-+.++|.=||+|. | .++..+++.|. +|+++|.+++.++..++..... +. +.+ ..|....
T Consensus 6 ~~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a-- 81 (478)
T 2y0c_A 6 HGSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAA-- 81 (478)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHH--
T ss_pred CCCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHH--
Confidence 4668899999985 3 44555666677 8999999999888877642100 11 221 1121110
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-...|+|+..-.--.-..+.........+++.+.+.|++|..++..+
T Consensus 82 --~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S 128 (478)
T 2y0c_A 82 --VAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS 128 (478)
T ss_dssp --HHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred --hhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12368777532110000011122567888889999999887665443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.08 E-value=4.5 Score=30.88 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeC-CHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----C-----CCCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDI-SSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----F-----EDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~-----~~~~f 74 (210)
..+|=.|++.|. ++..+++.|. +|+.++. +....+...+.... ..++.++.+|+.+... + .-+..
T Consensus 19 k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 97 (270)
T 3is3_A 19 KVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHL 97 (270)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 356777766553 3444555676 7888775 45555544444322 2578899999987430 0 01368
Q ss_pred cEEEECCccchhc-cCCCchHH-----------HHHHHHHHHHhccCCcEEEEEEc
Q 028385 75 DAVIDKGTLDSLM-CGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 75 D~Vi~~~~l~~~~-~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
|+++.+....... +...+.++ ...+.+.+.+.++++|.++.++-
T Consensus 98 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 98 DIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp CEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 9999876543210 11112222 23456677788888998877653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.44 E-value=3.8 Score=31.81 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCC--HHHHHHHHHhhc-CCCCcEEEEcccCCCCC----C-----CCCc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDIS--SVAIDMMKMKYE-EIPQLKYLQMDVRDMSF----F-----EDES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~----~-----~~~~ 73 (210)
..+|=.|++.|. ++..+++.|. +|+.++.+ ....+...+... ...++.++.+|+.+... + .-+.
T Consensus 50 k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 128 (294)
T 3r3s_A 50 RKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGG 128 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 357878876552 3344555676 79998886 333443333332 22568888899887430 0 0146
Q ss_pred ccEEEECCccchh--ccCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 74 FDAVIDKGTLDSL--MCGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 fD~Vi~~~~l~~~--~~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.|+++.+...... .+...+.++ ...+++.+.+.++.+|.++.++
T Consensus 129 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 129 LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 8999987664221 011112222 2345667777888889887765
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.44 E-value=3.9 Score=32.46 Aligned_cols=94 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred CCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc----C--CC---CcEEEEcccCCCCCCCCCcccE
Q 028385 8 TRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE----E--IP---QLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 8 ~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~--~~---~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
.++|.=||+|. | .++..+++.+. +|+.+|.+++.++..++... . .. ++.....|..+. -...|+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~D~ 78 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA----VKDADV 78 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH----HTTCSE
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH----HhcCCE
Confidence 36899999875 2 34444555565 79999999988877765521 0 00 000011111110 135798
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
|+..-.- .....+++.+...+++|..++..
T Consensus 79 vi~~v~~----------~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 79 ILIVVPA----------IHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EEECSCG----------GGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEEeCCc----------hHHHHHHHHHHHhCCCCCEEEEc
Confidence 8864332 33467788888889988766444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.41 E-value=1.3 Score=37.18 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
.++|+=+||| ..+..+++. +. +|+.+|.+++.++.+.+++ .+.++.+|+.+.. ...-+..|++++
T Consensus 3 ~M~iiI~G~G--~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia 74 (461)
T 4g65_A 3 AMKIIILGAG--QVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY----DLRVVNGHASHPDVLHEAGAQDADMLVA 74 (461)
T ss_dssp CEEEEEECCS--HHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHS----SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred cCEEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence 4678887776 455555543 44 7999999999999887764 4788999998843 122356888886
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=83.32 E-value=3.9 Score=28.32 Aligned_cols=95 Identities=11% Similarity=-0.068 Sum_probs=50.7
Q ss_pred CCCCEEEeCCCC-chhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPS-IVMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~-~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
...+|+=+|+|. |... ..+.+.+. +|+++|.++..++.+++ ...+.++.+|..+.. ...-..+|+|+..-
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~----~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS----EFSGFTVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT----TCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh----cCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 345789998864 3222 22333465 89999999865443321 124556667754421 01124689888642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.- ......+..+.+.+.+...++..
T Consensus 93 ~~----------~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 93 ND----------DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp SC----------HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CC----------cHHHHHHHHHHHHHCCCCeEEEE
Confidence 21 23334444455555555555443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.30 E-value=13 Score=28.14 Aligned_cols=95 Identities=8% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.++|.=||+|. | .++..+.+.+...|+.+|.+++..+...+.. ++.+ ..|..+.- ...|+|+..-.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~----~~~Dvvi~av~--- 77 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV----EAEY-TTDLAEVN----PYAKLYIVSLK--- 77 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT----TCEE-ESCGGGSC----SCCSEEEECCC---
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc----CCce-eCCHHHHh----cCCCEEEEecC---
Confidence 35899999874 2 3334444556633899999998887766553 2322 22332221 25799886422
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
......+++++...+++|..++..+-+.+
T Consensus 78 -------~~~~~~v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 78 -------DSAFAELLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp -------HHHHHHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred -------HHHHHHHHHHHHhhcCCCcEEEECCCCCc
Confidence 23457777888888888876655443334
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.13 E-value=12 Score=28.48 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=52.5
Q ss_pred CEEEeCCCC--chhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC-cccEEEECCccch
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~fD~Vi~~~~l~~ 85 (210)
+|.=||+|. +.++..+.+.+. .+|+++|.++..++.+++.-. ......|.... . . ..|+|+..-
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~----~~~~~~~~~~~--~--~~~aDvVilav---- 70 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----IDEGTTSIAKV--E--DFSPDFVMLSS---- 70 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----CSEEESCGGGG--G--GTCCSEEEECS----
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCC----cccccCCHHHH--h--cCCCCEEEEcC----
Confidence 577788775 233344444453 269999999988877654311 10112222221 1 2 579988642
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+......++.++...++++..++.+
T Consensus 71 ------p~~~~~~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 71 ------PVRTFREIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp ------CHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred ------CHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2245567788888889998866443
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.02 E-value=7.6 Score=29.83 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=46.6
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeC-CHHHHHHHHHhhc-CCCCcEEEEcccCCCCCC---------CCCccc
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDI-SSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFF---------EDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~-s~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~~---------~~~~fD 75 (210)
.+|=.|++.|. ++..+++.|. +|+.+|. ++..++...+... ...++.++.+|+.+.... .-+..|
T Consensus 31 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 109 (280)
T 4da9_A 31 VAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRID 109 (280)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCC
T ss_pred EEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 47777776653 3444555676 8999985 6666665544442 225788999999885410 013689
Q ss_pred EEEECCcc
Q 028385 76 AVIDKGTL 83 (210)
Q Consensus 76 ~Vi~~~~l 83 (210)
+++.+...
T Consensus 110 ~lvnnAg~ 117 (280)
T 4da9_A 110 CLVNNAGI 117 (280)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 99987655
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.95 E-value=2.7 Score=33.94 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=53.2
Q ss_pred CCCCEEEeCC-C-CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-C-CCCCcccEEEECCc
Q 028385 7 GTRDTCRRAA-P-SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-F-FEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGc-G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~-~~~~~fD~Vi~~~~ 82 (210)
...+||=.|+ | -|..+..+++....+|++++ ++.-.+.+++.-. . .++..+-.+.. . .....+|+|+....
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa--~--~v~~~~~~~~~~~~~~~~g~D~vid~~g 257 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA--D--DVIDYKSGSVEEQLKSLKPFDFILDNVG 257 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC--S--EEEETTSSCHHHHHHTSCCBSEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC--C--EEEECCchHHHHHHhhcCCCCEEEECCC
Confidence 3457999984 4 36667777765333899998 6666666654321 1 12211111110 0 01246999997432
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
- ....+....++|++||+++.+.
T Consensus 258 ~------------~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 258 G------------STETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp T------------THHHHGGGGBCSSSCCEEEESC
T ss_pred C------------hhhhhHHHHHhhcCCcEEEEeC
Confidence 1 1123566778899999986654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=82.93 E-value=7.2 Score=29.41 Aligned_cols=73 Identities=10% Similarity=0.002 Sum_probs=45.6
Q ss_pred CCEEEeCCCCchhHHHH----HHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC----CC------CCc
Q 028385 9 RDTCRRAAPSIVMSEDM----VKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FE------DES 73 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l----~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~----~~------~~~ 73 (210)
.+||=.|++. .++..+ ++.+. +|+.++.++..++...+.... ..++.++.+|+.+... +. .+.
T Consensus 15 k~vlITGasg-giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 92 (266)
T 1xq1_A 15 KTVLVTGGTK-GIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK 92 (266)
T ss_dssp CEEEETTTTS-HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCC-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 3567666644 444444 44566 899999998766655444321 2467888999887420 10 156
Q ss_pred ccEEEECCcc
Q 028385 74 FDAVIDKGTL 83 (210)
Q Consensus 74 fD~Vi~~~~l 83 (210)
.|+|+.+...
T Consensus 93 id~li~~Ag~ 102 (266)
T 1xq1_A 93 LDILINNLGA 102 (266)
T ss_dssp CSEEEEECCC
T ss_pred CcEEEECCCC
Confidence 8999886554
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=82.91 E-value=13 Score=28.01 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=57.7
Q ss_pred CCEEEeCCCC-chhHHH----HHHcCCCcEEEEeCCH---HHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCC
Q 028385 9 RDTCRRAAPS-IVMSED----MVKDGYEDIVNIDISS---VAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FED 71 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~----l~~~~~~~v~~vD~s~---~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~ 71 (210)
.++|=.|+++ |.++.. +++.+. +|+.++.++ ..++...+.. .+..++.+|+.+... -.-
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3577778751 444444 445576 899999886 3333332222 234678889887420 112
Q ss_pred CcccEEEECCccchh-----ccCC-CchHHHH-----------HHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSL-----MCGT-NAPISAS-----------QMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~-----~~~~-~~~~~~~-----------~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..|+++.+...... .+.. .+.++.. .+++.+.+.++++|.++.++
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 468999987654321 0000 1222222 34556666666678887765
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=82.86 E-value=13 Score=27.88 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=47.5
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEccc--CCCC---C------CCCC
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV--RDMS---F------FEDE 72 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~--~~~~---~------~~~~ 72 (210)
..+|=.|++.| .++..+++.|. +|+.+|.++..++...+.... ..++.++.+|+ .+.. . -.-+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g 91 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYP 91 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCS
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCC
Confidence 35777777655 23344555676 899999998877766554422 13678889998 4421 0 0124
Q ss_pred cccEEEECCcc
Q 028385 73 SFDAVIDKGTL 83 (210)
Q Consensus 73 ~fD~Vi~~~~l 83 (210)
..|+++.+...
T Consensus 92 ~id~lv~nAg~ 102 (252)
T 3f1l_A 92 RLDGVLHNAGL 102 (252)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 68999988664
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=82.34 E-value=6.6 Score=30.14 Aligned_cols=73 Identities=7% Similarity=0.079 Sum_probs=47.3
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-CCCCcEEEEcccCCCCC---C-----CCCcccEE
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSF---F-----EDESFDAV 77 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~---~-----~~~~fD~V 77 (210)
.+|=.|++.|. ++..+++.|. +|+.+|.++...+...+... ...++.++.+|+.+... + ..+..|++
T Consensus 35 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~l 113 (275)
T 4imr_A 35 TALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVDIL 113 (275)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCCEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCCEE
Confidence 46666765542 3344455576 89999998876665555442 22578899999987530 0 01478999
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+.+...
T Consensus 114 vnnAg~ 119 (275)
T 4imr_A 114 VINASA 119 (275)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 987664
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=82.13 E-value=12 Score=27.11 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=55.1
Q ss_pred CEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC-CC--CCCCCcccEEEECCc
Q 028385 10 DTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MS--FFEDESFDAVIDKGT 82 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~-~~--~~~~~~fD~Vi~~~~ 82 (210)
+||=.|+ +|.++..+++. +. +|++++.++.. ....++++++.+|+.+ .. .-.-+.+|+|+....
T Consensus 2 ~ilItGa-tG~iG~~l~~~L~~~g~-~V~~~~R~~~~-------~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGS-TGRVGKSLLKSLSTTDY-QIYAGARKVEQ-------VPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEEST-TSHHHHHHHHHHTTSSC-EEEEEESSGGG-------SCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECC-CCHHHHHHHHHHHHCCC-EEEEEECCccc-------hhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 5777774 56666666553 54 89999988642 2222678999999988 32 011235899998665
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...-..-..+......+++.+.+. ..++++.++
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~--~~~~iv~~S 105 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKA--EVKRFILLS 105 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHh--CCCEEEEEC
Confidence 432111111223344555555432 224666554
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=82.06 E-value=4.5 Score=30.93 Aligned_cols=106 Identities=8% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCEEEeCCC-CchhHHHH----HHcCCCcEEEEeCCHH---HHHHHHHhhcCCCCcEEEEcccCCCCC----C-----CC
Q 028385 9 RDTCRRAAP-SIVMSEDM----VKDGYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMSF----F-----ED 71 (210)
Q Consensus 9 ~~vLdiGcG-~G~~~~~l----~~~~~~~v~~vD~s~~---~~~~a~~~~~~~~~v~~~~~d~~~~~~----~-----~~ 71 (210)
..+|=.|++ +|.++..+ ++.|. +|+.++.++. .++...+.. .++.++.+|+.+... + .-
T Consensus 7 k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 7 KKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 457888875 24444444 44465 8999998875 233222222 347788899887420 0 02
Q ss_pred CcccEEEECCccchh-----ccCCCchHHH-----------HHHHHHHHHhccCCcEEEEEEc
Q 028385 72 ESFDAVIDKGTLDSL-----MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~-----~~~~~~~~~~-----------~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+..|+++.+...... .+...+.++. ..+++.+.+.|+++|.++.++.
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 468999987654321 0111122322 2345566666766788877653
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=81.89 E-value=28 Score=31.08 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=64.5
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------------C----CCcEEEEcccCCCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------------I----PQLKYLQMDVRDMSFF 69 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~----~~v~~~~~d~~~~~~~ 69 (210)
.+|-=||+|+ +.++..++..|. .|+..|++++.++.+++.... . .++. ...|...+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKEL--- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE-EESCGGGG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc-ccCcHHHH---
Confidence 3678888887 344555566677 899999999999888764320 0 1111 22222222
Q ss_pred CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 70 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 70 ~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
...|+||-. +.+-+ +-.+++++++.++++|+.++..-+.+-|.
T Consensus 392 --~~aDlVIEA-V~E~l-------~iK~~vf~~le~~~~~~aIlASNTSsl~i 434 (742)
T 3zwc_A 392 --STVDLVVEA-VFEDM-------NLKKKVFAELSALCKPGAFLCTNTSALNV 434 (742)
T ss_dssp --GSCSEEEEC-CCSCH-------HHHHHHHHHHHHHSCTTCEEEECCSSSCH
T ss_pred --hhCCEEEEe-ccccH-------HHHHHHHHHHhhcCCCCceEEecCCcCCh
Confidence 246888753 34444 78899999999999999988655444333
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=81.88 E-value=2.1 Score=30.47 Aligned_cols=95 Identities=9% Similarity=0.036 Sum_probs=56.1
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-CC-CCcEEEEcccCCC-CCCC----CCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-EI-PQLKYLQMDVRDM-SFFE----DESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-~~-~~v~~~~~d~~~~-~~~~----~~~fD~Vi~ 79 (210)
++-|||+|-|+|..-..+.+. +..+++.+|-.-. -.. .. +.-.++.+|+.+. + .. ....-++.+
T Consensus 41 ~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~-------~hp~~~P~~e~~ilGdi~~tL~-~~~~r~g~~a~LaHa 112 (174)
T 3iht_A 41 SGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVA-------SHPDSTPPEAQLILGDIRETLP-ATLERFGATASLVHA 112 (174)
T ss_dssp CSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCC-------CCGGGCCCGGGEEESCHHHHHH-HHHHHHCSCEEEEEE
T ss_pred CCceEEecCCCChhHHHHHHhCCCCcEEEEEeeec-------cCCCCCCchHheecccHHHHHH-HHHHhcCCceEEEEe
Confidence 467999999999999989886 6668999995311 011 11 3456888888774 2 10 223333333
Q ss_pred CCccchhccCCCch--HHHHHHHHHHHHhccCCcEEEE
Q 028385 80 KGTLDSLMCGTNAP--ISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 80 ~~~l~~~~~~~~~~--~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
... ++.... .....+-.-+..+|.|||.++.
T Consensus 113 D~G-----~g~~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 113 DLG-----GHNREKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp CCC-----CSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ecC-----CCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 211 111111 1233344557788999998843
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=81.75 E-value=0.52 Score=38.21 Aligned_cols=100 Identities=8% Similarity=0.088 Sum_probs=54.6
Q ss_pred CCEEEeCCCC-chhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-IVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+|+=+|+|. |.....++. .|. +|+.+|.++.-++.+++.... .+.....+..++. -.-..+|+|+..-.....
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE-TAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH-HHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--eeEeeeCCHHHHH-HHHcCCCEEEECCCcCCC
Confidence 6799999854 333333333 366 899999999888877665422 2222222211111 001258999875432210
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
....-+.++..+.|++||.++-+.+.
T Consensus 244 -------~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 -------RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp -------SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred -------CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 00000133456788999988665443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=13 Score=27.03 Aligned_cols=69 Identities=6% Similarity=0.004 Sum_probs=42.7
Q ss_pred EEEeCCCCc---hhHHHHH-HcCCCcEEEEeCCHH-HHHHHHHhhcCCCCcEEEEcccCCCCCC--CCCcccEEEECCcc
Q 028385 11 TCRRAAPSI---VMSEDMV-KDGYEDIVNIDISSV-AIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGTL 83 (210)
Q Consensus 11 vLdiGcG~G---~~~~~l~-~~~~~~v~~vD~s~~-~~~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~fD~Vi~~~~l 83 (210)
||=.|+..| .+...++ +.+. +|++++.++. .++.... ...++.++.+|+.+...+ .-+..|+|+.....
T Consensus 8 vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~ 83 (221)
T 3r6d_A 8 ITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEII---DHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME 83 (221)
T ss_dssp EEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHH---TSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred EEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhcc---CCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence 888885433 2334445 4566 8999999986 5443321 225789999999874200 01357999986654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=81.56 E-value=4.8 Score=32.41 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=55.7
Q ss_pred CCCCEEEeCCC--CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAP--SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
...+||=+|++ .|..+..+++....+|+++. ++.-.+.+++.-. -.++...-.+.. ...++.+|+|+..
T Consensus 164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~~d~v~d~ 238 (371)
T 3gqv_A 164 KPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA----EEVFDYRAPNLAQTIRTYTKNNLRYALDC 238 (371)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC----SEEEETTSTTHHHHHHHHTTTCCCEEEES
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC----cEEEECCCchHHHHHHHHccCCccEEEEC
Confidence 33579999984 57777777776333788885 7877777765421 122222111110 0123459999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhc-cCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~L-kpgG~~~~~~ 117 (210)
-. -...+....+.| ++||+++.+.
T Consensus 239 ~g-------------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 239 IT-------------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp SC-------------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred CC-------------chHHHHHHHHHhhcCCCEEEEEe
Confidence 22 123466677788 6999987653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.83 E-value=24 Score=29.57 Aligned_cols=98 Identities=9% Similarity=0.081 Sum_probs=57.0
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHH-HHHHHh---h-c-C-C---------CCcEEEEcccCCCCCCC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAI-DMMKMK---Y-E-E-I---------PQLKYLQMDVRDMSFFE 70 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~-~~a~~~---~-~-~-~---------~~v~~~~~d~~~~~~~~ 70 (210)
.+|.=||+|+ +.++..+++.+. +|+..|.+++.. +..++. . + . . .++++. .|... +
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~a---l- 128 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHK---L- 128 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGG---C-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHH---H-
Confidence 4688889886 455666667777 899999998821 111111 0 0 0 0 233332 33322 2
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
...|+||..-. + ...-...+++++...++|+.++...+-+-+
T Consensus 129 -~~aDlVIeAVp-e-------~~~vk~~v~~~l~~~~~~~aIlasnTSsl~ 170 (460)
T 3k6j_A 129 -SNCDLIVESVI-E-------DMKLKKELFANLENICKSTCIFGTNTSSLD 170 (460)
T ss_dssp -TTCSEEEECCC-S-------CHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred -ccCCEEEEcCC-C-------CHHHHHHHHHHHHhhCCCCCEEEecCCChh
Confidence 24688886322 1 124567788999999999988754443333
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=80.72 E-value=8.2 Score=29.70 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEE
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVI 78 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi 78 (210)
..+|=.|++.|. ++..+++.|. +|+.++.++...+.+.+... .++.++.+|+.+.. .+ +..|+++
T Consensus 17 k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~--~~iD~lv 91 (291)
T 3rd5_A 17 RTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMA--GQVEVRELDLQDLSSVRRFADGV--SGADVLI 91 (291)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSS--SEEEEEECCTTCHHHHHHHHHTC--CCEEEEE
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc--CCeeEEEcCCCCHHHHHHHHHhc--CCCCEEE
Confidence 457777766542 3344445576 89999999887776655442 46889999998743 12 4789999
Q ss_pred ECCcc
Q 028385 79 DKGTL 83 (210)
Q Consensus 79 ~~~~l 83 (210)
.+...
T Consensus 92 ~nAg~ 96 (291)
T 3rd5_A 92 NNAGI 96 (291)
T ss_dssp ECCCC
T ss_pred ECCcC
Confidence 87664
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=80.67 E-value=7.2 Score=32.25 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=54.4
Q ss_pred CEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------------CCCcEEEEcccCCCCCCCCC
Q 028385 10 DTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------------IPQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 10 ~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~v~~~~~d~~~~~~~~~~ 72 (210)
+|.=||+|. | .++..+++.+. +|+++|.+++.++..++.... ..++.+ ..|.... -.
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~----~~ 75 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKA----VL 75 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH----HH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHH----hc
Confidence 577788876 3 44455566676 899999999988876653110 011222 1222110 11
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccC---CcEEEEE
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP---GGIYMLI 116 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp---gG~~~~~ 116 (210)
..|+|+..-.-..-..+.........+++++.+.|++ |..++..
T Consensus 76 ~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~ 122 (436)
T 1mv8_A 76 DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVR 122 (436)
T ss_dssp TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEEC
T ss_pred cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 3587776421110000111112267788899999998 6555433
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=80.61 E-value=16 Score=27.38 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=45.3
Q ss_pred EEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CC--CCCcccEEE
Q 028385 11 TCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FF--EDESFDAVI 78 (210)
Q Consensus 11 vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~--~~~~fD~Vi 78 (210)
+|=.|++.| .++..+++.|. +|+.++.++..++...+... .++.++.+|+.+.. .. .-+..|+++
T Consensus 3 vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 79 (248)
T 3asu_A 3 VLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILV 79 (248)
T ss_dssp EEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEE
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 455565444 23344555676 89999999887766655443 36788899988742 01 124789999
Q ss_pred ECCcc
Q 028385 79 DKGTL 83 (210)
Q Consensus 79 ~~~~l 83 (210)
.+...
T Consensus 80 nnAg~ 84 (248)
T 3asu_A 80 NNAGL 84 (248)
T ss_dssp ECCCC
T ss_pred ECCCc
Confidence 87654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.56 E-value=10 Score=30.98 Aligned_cols=73 Identities=14% Similarity=0.112 Sum_probs=43.1
Q ss_pred CCEEEeCCCCchhHHHHHHc----CCCcEEEEeCCHH---HHHHHHHhhc----------CCCCcEEEEcccCCCCCC-C
Q 028385 9 RDTCRRAAPSIVMSEDMVKD----GYEDIVNIDISSV---AIDMMKMKYE----------EIPQLKYLQMDVRDMSFF-E 70 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~----~~~~v~~vD~s~~---~~~~a~~~~~----------~~~~v~~~~~d~~~~~~~-~ 70 (210)
.+||=.|+ +|.++..+++. +. +|++++.++. ..+...+... ...++.++.+|+.+.+.+ .
T Consensus 70 ~~vlVTGa-tG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 147 (427)
T 4f6c_A 70 GNTLLTGA-TGFLGAYLIEALQGYSH-RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVL 147 (427)
T ss_dssp EEEEEECT-TSHHHHHHHHHHTTTEE-EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCCC
T ss_pred CEEEEecC-CcHHHHHHHHHHHcCCC-EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCCC
Confidence 46787775 56666666543 44 7999988765 3333222111 015789999999884412 2
Q ss_pred CCcccEEEECCcc
Q 028385 71 DESFDAVIDKGTL 83 (210)
Q Consensus 71 ~~~fD~Vi~~~~l 83 (210)
...+|+|+.....
T Consensus 148 ~~~~d~Vih~A~~ 160 (427)
T 4f6c_A 148 PENMDTIIHAGAR 160 (427)
T ss_dssp SSCCSEEEECCCC
T ss_pred cCCCCEEEECCcc
Confidence 4578999976554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=7.5 Score=30.24 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=55.2
Q ss_pred CCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---------C-C--------------CCcEEEEcc
Q 028385 9 RDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---------E-I--------------PQLKYLQMD 62 (210)
Q Consensus 9 ~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------~-~--------------~~v~~~~~d 62 (210)
.+|.=||+|. | .++..+++.+. +|+.+|.+++.++.+++... . . .++.+. .|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~-~~ 93 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TD 93 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe-cC
Confidence 3588899986 3 35566666676 89999999998887654221 0 0 022222 22
Q ss_pred cCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 63 VRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 63 ~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
..+. -...|+|+..-.- .......+++++...++++..++
T Consensus 94 ~~~~----~~~aD~Vi~avp~--------~~~~~~~v~~~l~~~~~~~~iv~ 133 (302)
T 1f0y_A 94 AASV----VHSTDLVVEAIVE--------NLKVKNELFKRLDKFAAEHTIFA 133 (302)
T ss_dssp HHHH----TTSCSEEEECCCS--------CHHHHHHHHHHHTTTSCTTCEEE
T ss_pred HHHh----hcCCCEEEEcCcC--------cHHHHHHHHHHHHhhCCCCeEEE
Confidence 2210 1246888864211 11335677888888898887654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=80.26 E-value=0.68 Score=37.81 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=52.4
Q ss_pred CCCEEEeCCCC-chhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPS-IVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|+=+|+|. |......++ .|. +|+++|.++..++.+++.... .+.....+..++. -.-...|+|+..-....
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~--~~~~~~~~~~~l~-~~l~~aDvVi~~~~~p~ 243 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCG--RIHTRYSSAYELE-GAVKRADLVIGAVLVPG 243 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SSEEEECCHHHHH-HHHHHCSEEEECCCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCC--eeEeccCCHHHHH-HHHcCCCEEEECCCcCC
Confidence 45789999854 333333333 365 899999999988877664421 1212111111111 00125799987432110
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ....-+.++..+.|||||.++.+.
T Consensus 244 ~-------~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 244 A-------KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp S-------CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred C-------CCcceecHHHHhcCCCCcEEEEEe
Confidence 0 000111345667889999886554
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.10 E-value=15 Score=28.79 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=57.8
Q ss_pred CCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEE-ccc-CCCCCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQ-MDV-RDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~-~d~-~~~~~~~~~~fD~Vi~~~ 81 (210)
..+|+=||+|. +.++..+++.+. +|+.+ .+++.++..++.-.. .+...+.. ..+ .+.. .-..+|+|+..-
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vilav 94 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPS--AVQGADLVLFCV 94 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGG--GGTTCSEEEECC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH--HcCCCCEEEEEc
Confidence 45789999885 345555566666 89999 888888777654210 11111110 000 1111 124689888642
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. ......+++.+...++++..++...-+
T Consensus 95 k----------~~~~~~~l~~l~~~l~~~~~iv~~~nG 122 (318)
T 3hwr_A 95 K----------STDTQSAALAMKPALAKSALVLSLQNG 122 (318)
T ss_dssp C----------GGGHHHHHHHHTTTSCTTCEEEEECSS
T ss_pred c----------cccHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 2 235678889999999998877655433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=8.6 Score=33.87 Aligned_cols=107 Identities=10% Similarity=0.155 Sum_probs=69.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-C--------CCcEEEEeCCHHHHHHHHHhhcCC------------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-G--------YEDIVNIDISSVAIDMMKMKYEEI------------------------ 53 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~--------~~~v~~vD~s~~~~~~a~~~~~~~------------------------ 53 (210)
+...|+-+|||.=.....+... + ...++=+|.. +.++.-++.+...
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p-~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYS-DLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECH-HHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccH-HHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 3456999999998888877654 2 1234555543 3333333322200
Q ss_pred --CCcEEEEcccCCCC---------CC-CCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 54 --PQLKYLQMDVRDMS---------FF-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 54 --~~v~~~~~d~~~~~---------~~-~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.+..++.+|+.+.. .+ ..+.--++++-.+|.++ +.+...++++.+.+. ++|.+++.+...|
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~~~~~--~~~~~~~~e~~~~ 258 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM-----KPERSDSIIEATSKM--ENSHFIILEQLIP 258 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS-----CHHHHHHHHHHHHTS--SSEEEEEEEECCT
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc-----CHHHHHHHHHHHhhC--CCceEEEEEeecC
Confidence 36789999998742 12 34445577888888888 778999999999865 6777777664444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 210 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.9 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.86 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.86 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.85 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.84 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.83 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.83 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.82 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.8 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.78 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.75 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.73 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.73 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.73 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.73 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.72 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.71 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.7 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.69 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.67 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.67 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.66 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.65 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.65 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.64 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.63 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.63 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.62 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.6 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.6 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.52 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.49 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.45 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.44 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.44 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.41 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.4 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.4 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.37 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.36 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.36 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.36 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.34 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.3 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.27 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.23 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.21 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.18 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.18 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.18 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.17 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.11 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.07 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.06 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.06 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.96 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.92 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.91 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.91 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.82 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.82 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.77 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.76 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.75 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.72 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.72 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.71 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.57 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.54 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.5 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.45 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.43 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.42 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.41 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.19 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.18 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.14 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.02 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.6 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.53 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.47 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.34 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.33 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.07 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.04 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.88 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.81 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.68 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.6 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.47 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.46 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.38 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.29 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.09 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.09 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.99 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.96 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.84 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.76 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.72 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.7 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.37 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.13 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.93 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.84 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.61 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.48 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.0 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.75 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.14 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.98 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.95 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.82 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.74 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.66 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.57 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.15 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.85 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.48 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.04 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 91.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.3 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.27 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.04 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.02 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.98 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.87 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.85 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 89.64 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 89.03 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.65 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.04 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.6 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.19 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 86.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.68 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 85.93 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 85.92 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.89 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.88 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.5 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.52 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 84.34 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.33 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 83.78 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.75 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 83.21 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 82.73 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 82.53 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 82.04 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 81.73 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.36 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 80.91 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 80.89 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.3 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 80.03 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.90 E-value=3e-24 Score=164.73 Aligned_cols=108 Identities=21% Similarity=0.318 Sum_probs=96.8
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..+..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.+ ..++++|+++|+.+++ +++++||+|++..+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIA 90 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESC
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccc-cccccccccccccc
Confidence 34567899999999999999998875 89999999999999998874 3478999999999999 99999999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++|+ +++.+++++++|+|||||++++.++..|
T Consensus 91 l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 91 AHHF-------PNPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccc-------CCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999 8999999999999999999999876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=8.3e-24 Score=162.92 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=96.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
....+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.. ..+++.++++|+.+++ +++++||+|++.+++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l 92 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAA 92 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeeeecee
Confidence 3456899999999999999998875 89999999999999998874 3478999999999999 999999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+|+ +++.+++++++|+|||||++++.++..
T Consensus 93 ~~~-------~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 93 HHF-------SDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp GGC-------SCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ecc-------cCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 999 889999999999999999999887654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=6.9e-23 Score=156.17 Aligned_cols=105 Identities=26% Similarity=0.378 Sum_probs=93.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++... ..++.++++|+.+++ +++++||+|++..+++|+
T Consensus 38 ~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 38 RGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTCEEEEEEESCGGGC
T ss_pred CCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc-ccCcCceEEEEecchhhC
Confidence 46899999999999999999876 899999999999999988743 367889999999999 999999999999999998
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+..+..++++++.++|||||++++...+
T Consensus 116 -----~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 -----EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -----ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 5568899999999999999999876544
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.86 E-value=2.7e-22 Score=158.53 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
+.....+|||||||+|.++..+++....+|+|+|+|+.|++.|+++.+. . ++++|+++|+.++| +++++||+|++.
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~ 142 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQ 142 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhcc
Confidence 3445679999999999999999887334899999999999999988742 2 58999999999999 999999999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+++|+ +++.+++++++++|||||++++.++
T Consensus 143 ~~l~h~-------~d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 143 DAFLHS-------PDKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp SCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhhhc-------cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999 8889999999999999999988764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.4e-22 Score=151.55 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=94.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
.+..+|||||||+|.++..+++....+|+|+|+|+.|++.|+++.... ++++|+++|+.+++ +++++||+|++.+++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc-ccccccccccccccc
Confidence 445689999999999999887766668999999999999999987543 57899999999998 889999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+|+ +.++..+++++++++|||||.+++.+..
T Consensus 138 ~h~-----~~~~~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 138 GHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp GGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccc-----hhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence 999 5566779999999999999999987643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.85 E-value=1.5e-21 Score=151.99 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=97.5
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
+..+..+|||+|||+|.++..++.....+|+++|+|+.|++.|+++....++++|.++|+.+++ +++++||+|++..++
T Consensus 90 ~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTA 168 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCG
T ss_pred CCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccceEEeeccc
Confidence 4456779999999999999988876555899999999999999999877788999999999998 889999999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+|+ +.++..+++++++++|||||.+++.+.
T Consensus 169 ~hl-----~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 169 IYL-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-----chhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999 556677999999999999999988764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.85 E-value=7.4e-21 Score=142.67 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+++|||||||+|..+..+++++. +|+|+|+|+.|++.++++.+ +.+++.+...|+.+.+ ++++||+|++..+++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMM 106 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheeccccc--ccccccEEEEeeeee
Confidence 456999999999999999999987 89999999999999988764 3477899999999886 478999999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+ +..+..++++++.++|+|||++++..+.
T Consensus 107 ~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 107 FL-----EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp GS-----CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 98 6678889999999999999999887654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.3e-21 Score=149.47 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=87.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEEC-Cccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK-GTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~-~~l~~ 85 (210)
...+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.. ..++.+|+.+++ +++++||+|++. .++||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLP-FPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SCEEECCTTSCC-SCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc----cccccccccccc-cccccccceeeecchhhh
Confidence 345899999999999999998876 89999999999999998753 246789999999 999999999985 58899
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ ++..++++++.|+|||||.+++..
T Consensus 116 ~-------~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 116 V-------ENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp C-------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred h-------hhHHHHHHHHHhhcCcCcEEEEEE
Confidence 9 888999999999999999998765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=6.7e-21 Score=147.56 Aligned_cols=103 Identities=23% Similarity=0.416 Sum_probs=89.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEEC-Cccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDK-GTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~-~~l~ 84 (210)
...+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.+.. .++++.++|+++++ ++ ++||+|++. .+++
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CC-SCEEEEEECSSGGG
T ss_pred CCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcc-cc-cccchHhhhhhhhh
Confidence 345799999999999999999887 8999999999999999987533 57999999999998 65 589999986 5667
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+ +.++..++|++++++|||||++++..
T Consensus 118 ~~-----~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 118 YF-----DEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-----ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 66 55788999999999999999997743
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.83 E-value=1.4e-20 Score=146.24 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=92.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|..+..+++.+..+|+|+|+|+.|++.|++++... .++.|.++|+...+...+++||+|++.+++|
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~ 104 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFH 104 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGG
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcceee
Confidence 3589999999999999999888778999999999999999987543 4789999999876612577899999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
|+. .+.++...+++++.++|||||++++....
T Consensus 105 ~~~---~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 105 YAF---STSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp GGG---SSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ecC---CCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 872 24567889999999999999999876643
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.4e-20 Score=142.05 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=86.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
..+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.+.++|+.+++ +++++||+|++..+|+|+
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~-~~~~~fD~I~~~~~l~h~- 104 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDFALMVTTICFV- 104 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEEEEEESCGGGS-
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-----ccccccccccccc-cccccccccccccccccc-
Confidence 4589999999999987773 578999999999999875 5899999999999 899999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 88 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 88 ~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
+++.+++++++++|||||.+++.+....
T Consensus 105 ------~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 105 ------DDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp ------SCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ------cccccchhhhhhcCCCCceEEEEecCCc
Confidence 7899999999999999999999886543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=7.3e-21 Score=147.21 Aligned_cols=103 Identities=19% Similarity=0.132 Sum_probs=90.7
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||||||+|.++..+++....+|+|+|+|+.|++.|+++.... ++++|+++|+.++. ++++||+|++..++
T Consensus 33 pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~ 110 (245)
T d1nkva_ 33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVAACVGAT 110 (245)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEEEEESCG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEEEEEehh
Confidence 34689999999999999998864358999999999999999886332 56999999999874 68899999999999
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+|+ .+..+++++++|+|||||++++.+.
T Consensus 111 ~~~-------~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 111 WIA-------GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp GGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hcc-------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 999 8899999999999999999988764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.83 E-value=1.9e-20 Score=143.18 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=89.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+.+|||||||+|.++..+++.+. +|+|+|+|+++++.|+++.. .++.+..+|+.+.+ + +++||+|++.++++|+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~-~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQ-L-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCC-C-SSCEEEEEEESCGGGC
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc--cccccccccccccc-c-ccccccccccceeEec
Confidence 456899999999999999988876 89999999999999998864 46899999999887 4 6899999999999999
Q ss_pred ccCCCchHHHHHHHHHHH-HhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVS-RLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~-r~LkpgG~~~~~~~ 118 (210)
++...++.+++ ++|||||.+++...
T Consensus 95 -------~d~~~~l~~i~~~~Lk~gG~l~i~~p 120 (225)
T d2p7ia1 95 -------DDPVALLKRINDDWLAEGGRLFLVCP 120 (225)
T ss_dssp -------SSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -------CCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 89999999998 89999999988754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.82 E-value=1.5e-20 Score=140.05 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=92.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--------------CCcEEEEcccCCCCCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--------------PQLKYLQMDVRDMSFFEDE 72 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~~~ 72 (210)
...+|||+|||+|..+..++++|+ +|+|+|+|+.|++.|+++.+.. .++++.++|+.+++.....
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 98 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 98 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccccc
Confidence 456899999999999999999988 8999999999999999987432 3468899999887634456
Q ss_pred cccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 73 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 73 ~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.||+|++..+++|+ +..+...+++++.++|||||.+++..+.
T Consensus 99 ~~D~i~~~~~l~~l-----~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 99 HCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp SEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred ceeEEEEEeeeEec-----chhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 89999999999998 6678899999999999999998887654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=5.3e-20 Score=140.56 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=90.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
...+|||+|||+|..+..+++. +..+|+|+|+|+.|++.|+++.+.. .++.+..+|+.+. +.+.+|+|++.
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---~~~~~d~i~~~ 115 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---EIKNASMVILN 115 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---CCCSEEEEEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---ccccceeeEEe
Confidence 3458999999999999999874 4458999999999999999987543 4567777777654 45689999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
.++||+ +.++..+++++++|+|||||.+++.++..+
T Consensus 116 ~~l~~~-----~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 116 FTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp SCGGGS-----CGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred eecccc-----ChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 999998 667899999999999999999999876643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=2e-20 Score=144.76 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=87.0
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEEC-Cccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDK-GTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~~-~~l~~ 85 (210)
..+|||+|||+|.++..+++.+. +|+|+|.|+.|++.|+++.+. ..+++++++|+.+++ + +++||+|+|. ++++|
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-I-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-C-SCCEEEEEECTTGGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc-c-cccccccceeeeeeec
Confidence 35799999999999999999887 899999999999999988743 257999999999987 4 5689999985 56666
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+ .+..++.+++++++++|||||.|++.
T Consensus 115 ~----~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 115 I----IDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp C----CSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred c----CCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 5 23478899999999999999998763
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.2e-20 Score=141.61 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=94.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------------------CCCcEEEEcccCCC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------------------IPQLKYLQMDVRDM 66 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------------~~~v~~~~~d~~~~ 66 (210)
....+|||+|||+|..+..|++.|. +|+|+|+|+.+++.|+++... ..++++.++|+.++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 3456999999999999999999998 899999999999999987532 14689999999887
Q ss_pred CCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 67 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 67 ~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+....+.||+|++..+++|+ +..+...+++++.++|||||.+++..+.
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~-----~~~~r~~~~~~~~~~LkpgG~~~l~~~~ 170 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAI-----NPGDRKCYADTMFSLLGKKFQYLLCVLS 170 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cccccCceeEEEEEEEEEec-----cchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence 54677899999999999998 7788999999999999999998887764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.80 E-value=7e-20 Score=144.48 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=91.7
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++.... .+++|.++|+.+++ ++ ++||+|++.+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LN-DKYDIAICHA 102 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CS-SCEEEEEEES
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-cc-CCceEEEEeh
Confidence 345678999999999999999875 2 247999999999999999988654 47899999999988 64 5799999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++|+ +++..++++++++|||||.+++.+
T Consensus 103 ~l~~~-------~d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 103 FLLHM-------TTPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp CGGGC-------SSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhcC-------CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 99999 889999999999999999998877
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.6e-19 Score=139.42 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=84.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...+|||+|||+|.++..+++.. ..+++|+|+|+.|++.|+++. +++.|.++|+.+++ +++++||+|++.++++|
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCEEEEEEESCCCC
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhcc-CCCCCEEEEeecCCHHH
Confidence 45689999999999999999873 458999999999999999876 68999999999999 99999999999887766
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
+ +++.|+|||||.+++.+.+.
T Consensus 160 ~--------------~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 160 A--------------EELARVVKPGGWVITATPGP 180 (268)
T ss_dssp H--------------HHHHHHEEEEEEEEEEEECT
T ss_pred H--------------HHHHHHhCCCcEEEEEeeCC
Confidence 4 57899999999999887543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=5.4e-18 Score=133.27 Aligned_cols=105 Identities=8% Similarity=0.033 Sum_probs=88.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||+|.++..+++....+|+|+|+|+++++.|+++.++. .++.+...|..+. +++||.|++..+
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~fD~i~si~~ 126 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVDRIVSIEA 126 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCSEEEEESC
T ss_pred CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccchhhhhHhhH
Confidence 344689999999999999998773349999999999999999988543 4567777776654 368999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ +.++...++++++++|||||++++.+..
T Consensus 127 ~eh~-----~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 127 FEHF-----GHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp GGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHh-----hhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 9999 6678899999999999999999886543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=5.6e-18 Score=134.04 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=85.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC------CCcEEEEcccCCCC--CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDMS--FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~v~~~~~d~~~~~--~~~~~~fD~Vi~ 79 (210)
..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.... ....+...++..++ ....++||+|++
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence 45899999999999999999986 8999999999999999876321 12345555554321 124678999987
Q ss_pred C-CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 K-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~-~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
. .+++|+........+...++++++++|||||.|++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 5 47888755555567899999999999999999977543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2e-18 Score=132.10 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=85.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC-CCCCCcccEEEE-----C
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS-FFEDESFDAVID-----K 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~-~~~~~~fD~Vi~-----~ 80 (210)
..+|||||||+|..+..+++.+..+++++|+|+.+++.|+++.+.. .++.++..|+.... .+++++||.|+. .
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~ 133 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLS 133 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCB
T ss_pred CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccc
Confidence 3589999999999999999876568999999999999999998654 56778888776532 277889999874 4
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..++|+ .+...++++++|+|||||+|++.+
T Consensus 134 ~~~~~~-------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 134 EETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccc-------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 566666 889999999999999999997643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=1.2e-17 Score=124.61 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=87.6
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
.....+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++.+ +. .++++..+|+.+ + +++++||+|+++
T Consensus 50 ~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~-~~~~~fD~Ii~~ 126 (194)
T d1dusa_ 50 VDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-N-VKDRKYNKIITN 126 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-T-CTTSCEEEEEEC
T ss_pred cCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-h-hccCCceEEEEc
Confidence 34556899999999999999987654 89999999999999998764 22 468999999877 4 678899999999
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.++|+. .....++++++.++|||||.++++...
T Consensus 127 ~p~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 127 PPIRAG------KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CCSTTC------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccEEec------chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 988765 234678999999999999998776543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=6.6e-18 Score=133.27 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=89.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||.|.++..+++.-.++|+|+++|++.++.++++.... ..+.+...|. + +.+++||.|++..+
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~~~fD~i~sie~ 135 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---E-EFDEPVDRIVSLGA 135 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---G-GCCCCCSEEEEESC
T ss_pred CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---c-ccccccceEeechh
Confidence 345689999999999999998763349999999999999999887432 4567776665 3 45789999999999
Q ss_pred cchhccC--CCchHHHHHHHHHHHHhccCCcEEEEEEcCCc
Q 028385 83 LDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGDP 121 (210)
Q Consensus 83 l~~~~~~--~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p 121 (210)
++|+... ....++...+++++.++|||||++++.++..+
T Consensus 136 ~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 136 FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp GGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred HHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 9998311 12235789999999999999999998776543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.8e-18 Score=134.19 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=85.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc------C-CCcEEEEeCCHHHHHHHHHhhcCC---CCc--EEEEcccCC------CC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD------G-YEDIVNIDISSVAIDMMKMKYEEI---PQL--KYLQMDVRD------MS 67 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~------~-~~~v~~vD~s~~~~~~a~~~~~~~---~~v--~~~~~d~~~------~~ 67 (210)
....+|||||||+|.++..+++. + ...++++|+|+.|++.++++.... +++ .+...+++. .+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34457999999999998887653 1 235899999999999999987544 333 334444332 23
Q ss_pred CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.++++||+|++.+++||+ +++.+++++++++|||||.++++......
T Consensus 119 -~~~~~fD~I~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 119 -KELQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp -SSCCCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred -CCCCceeEEEEccceecC-------CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 678999999999999999 88999999999999999999888766544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.5e-17 Score=130.83 Aligned_cols=105 Identities=12% Similarity=0.120 Sum_probs=90.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||||||.|.++..+++.-.++|+|+++|+..++.|+++.+.. .++++..+|..+++ ++||.|++..+
T Consensus 61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~fD~i~si~~ 136 (285)
T d1kpga_ 61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSIGA 136 (285)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEESC
T ss_pred CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc----ccccceeeehh
Confidence 445689999999999999988773359999999999999999987433 67899999987654 68999999999
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++|+ ...+...+++++.++|||||++++.++.
T Consensus 137 ~eh~-----~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 137 FEHF-----GHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp GGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhc-----CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 9998 4567789999999999999999987764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=1.5e-17 Score=127.14 Aligned_cols=108 Identities=10% Similarity=0.023 Sum_probs=93.0
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
|.....+|||+|||+|..+..+++. +...|+|+|+|+.|++.++++....+++.++..|......+.+..+|++++...
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence 4455678999999999999999987 445899999999999999999887789999999988865466778888888777
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+++. .+...++.++++.|||||.+++...
T Consensus 151 ~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 151 VAQP-------NQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccch-------HHHHHHHHHHHHhcccCceEEEEee
Confidence 8877 8899999999999999999988753
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.72 E-value=1.6e-17 Score=128.88 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=88.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++.... .+++++.+|+.+. . ..+||+|+++.
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~--~-~~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--L-PRKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--C-SSCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh--c-ccchhheeecc
Confidence 45568999999999999999986 4558999998 66888888877432 6899999998653 2 35799999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++||+ +.++..++|++++++|||||++++.+..
T Consensus 155 vlh~~-----~d~~~~~~L~~~~~~LkPGG~l~i~e~~ 187 (253)
T d1tw3a2 155 VLLNW-----PDHDAVRILTRCAEALEPGGRILIHERD 187 (253)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ccccC-----CchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence 99998 6667789999999999999999998864
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.72 E-value=9.1e-18 Score=124.47 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|.++..+++.. .+|+++|+++.+++.|+++.+.. ++++++++|+.+.. +....||.|++...
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-CKIPDIDIAVVGGS 109 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-TTSCCEEEEEESCC
T ss_pred CCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-cccCCcCEEEEeCc
Confidence 344689999999999999998875 48999999999999999987433 68999999998877 67789999999876
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.+++ ..+++.+.+.|||||++++....
T Consensus 110 ~~~~----------~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 110 GGEL----------QEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp TTCH----------HHHHHHHHHTEEEEEEEEEEECB
T ss_pred cccc----------hHHHHHHHHHhCcCCEEEEEeec
Confidence 6544 67899999999999999876543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.71 E-value=1.5e-17 Score=125.43 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=85.2
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCC---cccEEEE
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE---SFDAVID 79 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~---~fD~Vi~ 79 (210)
+.....+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++.+..+|+.++..|+.+.+ .... .+|+|+.
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~-~~~~~~~~vd~v~~ 131 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPW-KYSGIVEKVDLIYQ 131 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGG-GTTTTCCCEEEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCcc-ccccccceEEEEEe
Confidence 4455678999999999999999986 555899999999999999998877789999999998865 3333 3444433
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+.|. .+...++++++++|||||.+++...
T Consensus 132 --~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 132 --DIAQK-------NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp --CCCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccCh-------hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 34455 6788999999999999999988763
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.6e-18 Score=134.40 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=83.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-Cc-----------------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QL----------------------------- 56 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~v----------------------------- 56 (210)
...+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++.+... ..
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 345799999999999887777666689999999999999998874321 11
Q ss_pred --EEEEccc----CCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 57 --KYLQMDV----RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 57 --~~~~~d~----~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.....+. ...+ ++.++||+|++.+++||+. ...++...+++++.++|||||.+++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~---~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAP-AVLPLADCVLTLLAMECAC---CSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp EEEEEECCTTSSSTTTT-CCCCCEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhccccccccccccccc-ccCCcccEEeehhhHHHhc---ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 1111111 1123 6788999999999999982 234578899999999999999999987643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.8e-17 Score=128.24 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=81.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++.+.. -++.+.++|+.+. ++.++||+|+++...
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~fD~V~ani~~--- 194 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDLLVANLYA--- 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEEEEEECCH---
T ss_pred cCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--ccccccchhhhcccc---
Confidence 45899999999999999988876 8999999999999999987432 4678899988763 467899999997554
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.....++.++.++|||||++++..+
T Consensus 195 -------~~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 195 -------ELHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp -------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 3457788999999999999988654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=1e-16 Score=120.24 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=85.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~ 85 (210)
.|||||||+|..+..+++. +...++|+|+++.++..|.++.. +..|+.++++|+..+. .++++++|.|+..+...|
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P~ 111 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDPW 111 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCCC
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccccc
Confidence 5899999999999999886 56689999999999999988874 4479999999998753 378999999998766554
Q ss_pred hccCCCchHH------HHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPIS------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. .... ....+++++|+|||||.+++.+
T Consensus 112 ~-----k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 112 P-----KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp C-----SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred c-----hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 1111 2578999999999999998876
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.67 E-value=2.9e-16 Score=121.86 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=88.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++.+. .+++.++.+|..+ + .+ ..||+|++.+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~-~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P-LP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C-CS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c-cc-ccchhhhccc
Confidence 45568999999999999999986 5568999997 7888988887642 2678999999875 3 33 4599999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+||++ +.++..++|++++++|||||++++++..
T Consensus 156 vLh~~-----~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 156 VLLNW-----SDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccc-----CcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 99998 6677889999999999999999998864
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.5e-16 Score=123.99 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=82.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-C------------------------------
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-Q------------------------------ 55 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~------------------------------ 55 (210)
+..+|||+|||+|.++...+.....+|+++|+|+.|++.++++.++.+ .
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 456899999999988765555545589999999999999998764321 1
Q ss_pred -cEEEEcccCCCC-----CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 56 -LKYLQMDVRDMS-----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 56 -v~~~~~d~~~~~-----~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.....+|+.... ....++||+|++.+++||+. .+..+..+++++++++|||||.+++...
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~---~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS---PDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC---SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc---cCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 123445554321 14467899999999999981 1345789999999999999999988764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=1.3e-16 Score=120.63 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=81.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
....+|||||||+|.++..+++. ....|+++|+++.+++.|+++.+. ..++.++++|+.+.. ..+++||+|++.+
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-~~~~~fD~I~~~~ 152 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIFVTV 152 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECS
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-ccccchhhhhhhc
Confidence 44568999999999999999875 344799999999999999998853 478999999998876 6678999999999
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.++++ . +++.+.|||||++++.
T Consensus 153 ~~~~~-------p------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 153 GVDEV-------P------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp BBSCC-------C------HHHHHHEEEEEEEEEE
T ss_pred cHHHh-------H------HHHHHhcCCCcEEEEE
Confidence 99887 2 3567889999999764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=1.9e-15 Score=114.89 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=86.2
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEEC
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDK 80 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~ 80 (210)
.....+|||+|||+|..+..+++. +...|+++|+++.|++.++++.+...++..+..|+.... ......+|+|+..
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d 150 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence 345568999999999999999986 345899999999999999999887788889999887643 1345678888763
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+.+. .+...+++++.+.|||||.+++...
T Consensus 151 --~~~~-------~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 151 --VAQP-------TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp --CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --cccc-------chHHHHHHHHHHhcccCCeEEEEEE
Confidence 3344 6788899999999999999988754
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=1.2e-15 Score=117.45 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 81 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~ 81 (210)
...+|||+|||+|.++..+++. +..+|+++|+++++++.|+++.+.. .++++..+|+.+. ++++.||.|+..
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~fD~V~ld- 161 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIAD- 161 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEEC-
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccceeeeeeec-
Confidence 4468999999999999999985 4558999999999999999987543 6899999999875 467899999863
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ .++..++.++.++|||||++++..
T Consensus 162 ----~-------p~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 162 ----I-------PDPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp ----C-------SCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred ----C-------CchHHHHHHHHHhcCCCceEEEEe
Confidence 3 455678999999999999997754
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.63 E-value=1.6e-15 Score=113.58 Aligned_cols=108 Identities=19% Similarity=0.191 Sum_probs=84.0
Q ss_pred CEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC-CCCCCcccEEEECCccch
Q 028385 10 DTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~ 85 (210)
.|||||||+|.++..+++. +...++|+|+++.++..|.++.. +.+|+.+..+|+..+. .++++++|.|++.+.--+
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdPw 113 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPW 113 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCCC
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccccc
Confidence 5899999999999999886 66689999999999999988774 4479999999998864 378899999987655432
Q ss_pred hccCC-CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGT-NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~-~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.--.. ..+--...+++.+.++|||||.+++.+
T Consensus 114 ~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 114 PKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 20000 000012688999999999999998876
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.9e-16 Score=122.83 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=85.6
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCCCCCCCCcccEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
....+|||+|||+|.++..+++. +..+|+++|+++++++.|+++.+. ..++.+.++|+.+.+ +++++||.|+
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~-~~~~~fDaV~ 173 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRAV 173 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEEE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc-ccCCCcceEE
Confidence 34568999999999999999986 456899999999999999987642 378999999999988 8999999998
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
. ++ +++..++.++.++|||||++++..
T Consensus 174 l-----dl-------p~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 174 L-----DM-------LAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp E-----ES-------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred E-----ec-------CCHHHHHHHHHhccCCCCEEEEEe
Confidence 5 35 677889999999999999997765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.62 E-value=7.2e-16 Score=123.71 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=83.6
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.|..+|+++|.|+ +++.|++..+. ..++.++.+|+.+++ +++++||+|++..+.+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEecce
Confidence 457999999999999999999888999999997 55667665532 267999999999998 8999999999977766
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++. .......++..+.|+|||||.++
T Consensus 117 ~~~----~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 117 FLL----YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TBS----TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eec----cchhHHHHHHHHHhccCCCeEEE
Confidence 541 22567888999999999999885
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.61 E-value=9e-16 Score=116.37 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
....+|||||||+|.++..+++... +|+++|+++.+++.|+++.....|+.++.+|..... ...++||+|++...+++
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~-~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAPT 146 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBSS
T ss_pred cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcccccccccCchhhcc-hhhhhHHHHHhhcchhh
Confidence 4456899999999999999888764 899999999999999999887789999999987754 35678999999998887
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+ ...+.+.|||||++++.
T Consensus 147 i-------------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 147 L-------------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp C-------------CHHHHHTEEEEEEEEEE
T ss_pred h-------------hHHHHHhcCCCCEEEEE
Confidence 7 23567889999999775
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.1e-15 Score=116.18 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=81.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC-------CCCcEEEEcccCCCCCCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~fD~ 76 (210)
....+|||||||+|..+..+++. +..+|+++|+++++++.|+++.+. ..++.+..+|+.... ..+++||+
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-~~~~~fD~ 153 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPYDA 153 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-chhhhhhh
Confidence 34468999999999999888875 345899999999999999988742 257899999998877 67889999
Q ss_pred EEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 77 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|++...++++ ..++.+.|||||++++..
T Consensus 154 I~~~~~~~~i-------------p~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 154 IHVGAAAPVV-------------PQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEECSBBSSC-------------CHHHHHTEEEEEEEEEEE
T ss_pred hhhhcchhhc-------------CHHHHhhcCCCcEEEEEE
Confidence 9999998887 235788999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.6e-15 Score=119.58 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|.++..+++.|..+|+++|.|+.+...++...+. ..+++++++|+.+++ ++.++||+|++....+
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMGY 113 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCBT
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEEEEeeeee
Confidence 4457999999999999999999888999999999987655443322 268999999999998 8889999999976665
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++. .......++....++|||||.++
T Consensus 114 ~~~----~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 114 FLL----FESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TBT----TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ecc----cccccHHHHHHHHhcCCCCcEEe
Confidence 541 22456778888899999999886
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.9e-15 Score=120.60 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=81.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCC-CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~--~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||||||+|.++..+++.|..+|+++|.|+.+.. +++.. .+. .++.++++|+.+++ ++.++||+|++....+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~-a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY-AVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHH-HHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhh-hhhHHHHhCCccccceEeccHHHcc-cccceeEEEeeeeeee
Confidence 3569999999999999999998778999999986544 44433 222 67999999999998 8889999999976665
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
++ ........++..+.|+|||||.++
T Consensus 112 ~l----~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 112 CL----FYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp TB----TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ee----ccHHHHHHHHHHHHhcCCCCeEEE
Confidence 54 122467889999999999999886
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.7e-16 Score=123.49 Aligned_cols=103 Identities=7% Similarity=-0.006 Sum_probs=83.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCcEEEEcccCCCCCCCCCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVRDMSFFEDES 73 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-----------~~~~v~~~~~d~~~~~~~~~~~ 73 (210)
.....|||+|||+|.++..+++. +..+++|+|+|+.+++.|++..+ ...+++|+++|+.+.+ +.+..
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~-~~~~~ 228 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE-WRERI 228 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHH-HHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccc-ccccc
Confidence 44568999999999999998875 55679999999999999987642 2357999999999987 66665
Q ss_pred c--cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 74 F--DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 74 f--D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ |+|+++. +.+. ++....+.++.+.|||||++++..
T Consensus 229 ~~advi~~~~-~~f~-------~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 229 ANTSVIFVNN-FAFG-------PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHCSEEEECC-TTTC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CcceEEEEcc-eecc-------hHHHHHHHHHHHhCCCCcEEEEec
Confidence 5 5677654 4445 788999999999999999997654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=8.9e-15 Score=113.91 Aligned_cols=111 Identities=12% Similarity=0.183 Sum_probs=87.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++.+. ..+++|+++|+.+. +++++||+|+++..
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNPP 184 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTCCEEEEEECCC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc--cCCCceeEEEecch
Confidence 34578999999999999999875 566999999999999999998843 35799999998763 56789999999866
Q ss_pred cchh------------------ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~------------------~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+-.. ..|.++.....+++.++.++|+|||.+++ +++
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig 238 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG 238 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 4210 01112345678899999999999999966 443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=2.3e-14 Score=111.29 Aligned_cols=98 Identities=10% Similarity=0.142 Sum_probs=81.0
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
....+|||+|||+|.++..+++. +..+|+++|+++++++.|+++.+.. .++.+...|+... +....||.|+.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~--~~~~~~D~V~~- 178 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFL- 178 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEE-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--ccccceeeeEe-
Confidence 44568999999999999999885 3458999999999999999988543 5678888886543 56788999874
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++ +++.++++++.++|||||++++..
T Consensus 179 ----d~-------p~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 179 ----DV-------PDPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp ----CC-------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred ----cC-------CCHHHHHHHHHhhcCCCCEEEEEe
Confidence 35 667889999999999999998765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.8e-14 Score=111.80 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=76.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC-------------CCCcEEEEcccCCCC-CCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE-------------IPQLKYLQMDVRDMS-FFE 70 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~v~~~~~d~~~~~-~~~ 70 (210)
...+|||+|||+|.++..+++. +..+|+++|+++++++.|+++.+. ..|+.+...|+.+.. .++
T Consensus 98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~ 177 (324)
T d2b25a1 98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 177 (324)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC
Confidence 3468999999999999999985 445899999999999999987631 258999999998754 256
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..||.|+.. + +++..++.++.++|||||++++..
T Consensus 178 ~~~fD~V~LD-----~-------p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 178 SLTFDAVALD-----M-------LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp ---EEEEEEC-----S-------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCcceEeec-----C-------cCHHHHHHHHHHhccCCCEEEEEe
Confidence 7789999852 3 445678999999999999997754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.44 E-value=1.1e-13 Score=104.10 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=80.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||||||+|..+..+++....+|+++|.++.+++.|+++.++ ..|+.++++|..... ...++||.|++...+.
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~-~~~~pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF-PPKAPYDVIIVTAGAP 156 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEECSBBS
T ss_pred ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC-cccCcceeEEeecccc
Confidence 4468999999999999998876224799999999999999998853 489999999998865 5678999999998888
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++ + ..+.+.|||||++++.-
T Consensus 157 ~i-------p------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 157 KI-------P------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp SC-------C------HHHHHTEEEEEEEEEEE
T ss_pred cC-------C------HHHHHhcCCCCEEEEEE
Confidence 77 2 23567899999997653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.44 E-value=1.2e-13 Score=98.59 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=81.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++...+.++..+|+++|.++.+++.++++.+.. .+++++++|+... + ...++||+|+....
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~-~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID-CLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH-HBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccc-ccccccceeEechh
Confidence 45689999999999999999888889999999999999999988543 5689999998873 3 55788999998765
Q ss_pred cchhccCCCchHHHHHHHHHHH--HhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~~ 117 (210)
+.. ......+..+. ++|+|||.+++-+
T Consensus 93 y~~--------~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YAK--------ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SHH--------HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hcc--------chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 432 34555566554 5799999987643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=2.3e-13 Score=108.64 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=86.3
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC----CCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM----SFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~----~~~~~~~fD~Vi~~ 80 (210)
..+|||++||+|.++..++..+..+|+++|+|+.+++.++++... . +++++.++|+.+. + ..+++||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~-~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ-KKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH-hccCCCCchhcC
Confidence 468999999999999999998877999999999999999998842 2 5789999998763 2 346789999986
Q ss_pred CccchhccCCC----chHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 81 GTLDSLMCGTN----APISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 81 ~~l~~~~~~~~----~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.....- +.. ...+..+++..+.++|||||.+++.+++.
T Consensus 225 pP~~~~--~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 225 PPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CccccC--CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 543211 100 12356778999999999999998887664
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=2.5e-13 Score=108.17 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCC----CCCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDM----SFFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~----~~~~~~~fD~Vi~~~ 81 (210)
..+|||++||+|.++..++.. ..+|+++|+|+.+++.|+++.+ +..+++++++|+.+. + ...++||+|++..
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~-~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLE-KEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHH-HTTCCEEEEEECC
T ss_pred CCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhH-hhhcCCCEEEEcC
Confidence 468999999999999988864 4589999999999999999874 346899999998763 2 3467899999865
Q ss_pred ccchhccCCC----chHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 82 TLDSLMCGTN----APISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 82 ~l~~~~~~~~----~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
.... .+.. ......+++..+.++|||||.+++.+++.
T Consensus 224 P~~~--~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 224 PAFA--KGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCSC--CSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred Cccc--cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4221 1111 12456788999999999999998888763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=3.7e-13 Score=101.78 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=79.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C---CCcEEEEeCCHHHHHHHHHhhc-------CCCCcEEEEcccCCCCCCCC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G---YEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFED 71 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~---~~~v~~vD~s~~~~~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~ 71 (210)
....+|||||||+|..+..+++. + ..+|+++|+++++++.|+++.. +..|+.+..+|..+.. .+.
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~-~~~ 157 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY-PPN 157 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-GGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc-ccc
Confidence 45569999999999999888764 2 2379999999999999988753 2268999999998865 567
Q ss_pred CcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 72 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 72 ~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++||.|++...++++ + ..+.+.|||||++++.-
T Consensus 158 ~~fD~Iiv~~a~~~~-------p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 158 APYNAIHVGAAAPDT-------P------TELINQLASGGRLIVPV 190 (223)
T ss_dssp CSEEEEEECSCBSSC-------C------HHHHHTEEEEEEEEEEE
T ss_pred cceeeEEEEeechhc-------h------HHHHHhcCCCcEEEEEE
Confidence 799999999988877 2 34678999999997753
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=4.1e-13 Score=103.85 Aligned_cols=99 Identities=12% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC-CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+|||+|||+|.++..+++.+.++|+++|+++.+++.++++.+ +. ++++++++|+.++. ..+.||.|+....-
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~~~D~Ii~~~p~ 184 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GENIADRILMGYVV 184 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCSCEEEEEECCCS
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--cCCCCCEEEECCCC
Confidence 345799999999999999998887799999999999999999874 33 56999999998875 56789999875432
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
....++.++.++||+||++.+..+
T Consensus 185 -----------~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 185 -----------RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp -----------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred -----------chHHHHHHHHhhcCCCCEEEEEec
Confidence 223467778889999999866543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.36 E-value=2.7e-12 Score=95.00 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=77.2
Q ss_pred CCCCCCEEEeCCCCchhHHH----HHHc----C-CCcEEEEeCCHHHHHHHHHhhc------------------CC----
Q 028385 5 STGTRDTCRRAAPSIVMSED----MVKD----G-YEDIVNIDISSVAIDMMKMKYE------------------EI---- 53 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~----l~~~----~-~~~v~~vD~s~~~~~~a~~~~~------------------~~---- 53 (210)
..+..||+++|||+|.-... +.+. + ..+++|+|+|+.+++.|++..- ..
T Consensus 22 ~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 22 RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence 45667999999999974333 3322 1 1269999999999999985320 00
Q ss_pred -----------CCcEEEEcccCCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 54 -----------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 54 -----------~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
..+.+...+.......+.+.||+|+|.++|.++ +.+...++++++++.|+|||++++-
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-----~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 123455555544321346789999999999998 6778899999999999999988654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=1.2e-12 Score=96.59 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=93.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
.....+||++||+|..+..+++. +..+++|+|.++.|++.|+++.+.. .++.++++++.++. .+..++||.|+.
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~ 101 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 101 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence 34568999999999999999886 5568999999999999999998664 68999999988753 255689999987
Q ss_pred CCccch--hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 80 KGTLDS--LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 80 ~~~l~~--~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
...+.. +-...+......+.+..+.++|+|||.+++++|....
T Consensus 102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~E 146 (192)
T d1m6ya2 102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLE 146 (192)
T ss_dssp ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHH
T ss_pred ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHH
Confidence 544321 1122345578889999999999999999999987644
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.36 E-value=1.3e-12 Score=96.68 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|||+|||+|.++..++..+..+|+++|+++.+++.|+++. .+++++++|+.+++ ++||+|+++..+.
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l~----~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEIS----GKYDTWIMNPPFG 118 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGCC----CCEEEEEECCCC-
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccccEEEEehhhcC----CcceEEEeCcccc
Confidence 3579999999999999888888778999999999999999987 57899999998765 5799999987653
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.1e-12 Score=106.96 Aligned_cols=104 Identities=12% Similarity=0.044 Sum_probs=74.4
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-----------CCCcEE-EEcccCCCCC--CC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-----------IPQLKY-LQMDVRDMSF--FE 70 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~v~~-~~~d~~~~~~--~~ 70 (210)
....++||||||+|..+..++.. +.++++|+|+|+.+++.|+++.+. ...+.+ ..++....+. ..
T Consensus 215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~ 294 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL 294 (406)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence 44567999999999999999876 666899999999999999987632 112222 2333332220 01
Q ss_pred CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 71 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 71 ~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-...|+|+++.. .+. ++....+.++.+.|||||++++.+
T Consensus 295 ~~~adVV~inn~-~f~-------~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 295 IPQCDVILVNNF-LFD-------EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp GGGCSEEEECCT-TCC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccceEEEEecc-cCc-------hHHHHHHHHHHHhcCCCcEEEEec
Confidence 124678887643 345 889999999999999999997654
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.30 E-value=2.2e-12 Score=102.39 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=86.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCC-C--CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDM-S--FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~-~--~~~~~~fD~Vi~ 79 (210)
...+|||+.||+|.++..++..+..+|+++|+|+.+++.++++.+ .. .+++++++|+.+. . ....++||+|++
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 346899999999999998888887789999999999999999874 22 4789999999663 1 023568999998
Q ss_pred CCccchhc--cCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLM--CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~--~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...-..-. .-.....+..++++.+.++|+|||.+++.+++
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 64421100 00122357888999999999999999988875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.27 E-value=1.3e-11 Score=94.36 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=81.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.+..+|||||||+|.++..+++. +..+++..|.. ..++ .....++++++.+|+.+ + .+ ..|+++.+.+||
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~----~~~~~~ri~~~~gd~~~-~-~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE----NAPPLSGIEHVGGDMFA-S-VP--QGDAMILKAVCH 150 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT----TCCCCTTEEEEECCTTT-C-CC--CEEEEEEESSGG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh----ccCCCCCeEEecCCccc-c-cc--cceEEEEehhhh
Confidence 45678999999999999999876 66689999974 3332 22333789999999875 3 44 349999999999
Q ss_pred hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++ +.++..++|+++++.|+|||++++.++.
T Consensus 151 ~~-----~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 151 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 98 7788999999999999999999999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=4.8e-12 Score=92.83 Aligned_cols=102 Identities=5% Similarity=-0.018 Sum_probs=79.9
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
..+|||++||+|.++...+.+|..+|+.+|.++.+++.++++.+. ..++.++.+|+.+.....+.+||+|++...+..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~ 123 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR 123 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcccc
Confidence 457999999999999999999988999999999999999998753 367889999987642145778999998766432
Q ss_pred hccCCCchHHHHHHHHHHH--HhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~~ 117 (210)
....+++..+. .+|+++|.+++-.
T Consensus 124 --------~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 124 --------GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp --------TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --------chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 23445555554 4699999887643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=2e-11 Score=90.78 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=62.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|||+|||+|.++..++..+..+|+++|+++.+++.++++.+.. .+.++..+|+..+ ++.||+|+++..+..
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~----~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF----NSRVDIVIMNPPFGS 121 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC----CCCCSEEEECCCCSS
T ss_pred CEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh----CCcCcEEEEcCcccc
Confidence 579999999999999988888778999999999999999987543 5678899998764 357999999877643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=4.8e-11 Score=92.30 Aligned_cols=108 Identities=13% Similarity=0.115 Sum_probs=79.1
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
..+|+|+|||+|..+..+++.+..+|+++|+|+.+++.|+++.+.. .++.+..+|+.+......++||+|+++...-
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 4579999999999999998877778999999999999999988533 4677888888764213347899999985531
Q ss_pred ----------------hhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 85 ----------------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 85 ----------------~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
++..|.++..-..+++ .++|+|||++++ +++
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~-Eig 237 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSGKIVLM-EIG 237 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEE-ECC
T ss_pred CcccccceeeeeccccccccccchHHHHHHHH---HHhcCCCCEEEE-EEC
Confidence 1112334445555554 578999998754 444
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.18 E-value=4.4e-11 Score=91.43 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|||||||+|.++..+++. +..+++..|.. ..++. ....++++++.+|+.+. .+ .+|+++.+.+||+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----~~~~~rv~~~~gD~f~~--~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVEN----LSGSNNLTYVGGDMFTS--IP--NADAVLLKYILHN 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT----CCCBTTEEEEECCTTTC--CC--CCSEEEEESCGGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHh----CcccCceEEEecCcccC--CC--CCcEEEEEeeccc
Confidence 4567999999999999999886 56689999984 44432 22337899999998763 33 5799999999999
Q ss_pred hccCCCchHHHHHHHHHHHHhccCC---cEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~Lkpg---G~~~~~~~~ 119 (210)
+ +.++..++|+++++.|+|| |++++.+..
T Consensus 151 w-----~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 151 W-----TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp S-----CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred C-----ChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 8 7788899999999999999 788887753
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.18 E-value=9.6e-12 Score=91.09 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=80.7
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcEEEEcccCCC-C--CCCCCcccEEE
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDM-S--FFEDESFDAVI 78 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~~~~~d~~~~-~--~~~~~~fD~Vi 78 (210)
.....+|||+.||+|.++...+.+|..+|+++|.++.+++.++++.+. ..++++.++|+.+. . ......||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 344578999999999999999999988999999999999999998742 25789999998763 1 02356899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHH--HhccCCcEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~--r~LkpgG~~~~~ 116 (210)
....+.. ......+..+. .+|+++|.+++-
T Consensus 119 lDPPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 8776532 34556677665 479999988643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=2.1e-11 Score=88.35 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=71.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCC-C--CCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDM-S--FFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~-~--~~~~~~fD~Vi~~~~ 82 (210)
...+|||+|||+|.++...+..+. +++++|.++.+++.++++.+.. -+.++...+.... + ....++||+|++...
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 345899999999999999888887 8999999999999999887532 2234454444321 0 135678999998765
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
++. +-......+++ ..+|+|||.+++..
T Consensus 120 Y~~-----~~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 YAM-----DLAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp TTS-----CTTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred ccc-----CHHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 431 11233333333 36899999886543
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=2.2e-11 Score=95.73 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CC--CCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EI--PQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~--~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
...+|||+.||+|.++..++..+. +|++||.|+.+++.|+++.+ .. .+++|+++|+.+.- ....++||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 346899999999999999998877 89999999999999999874 22 36899999987631 023578999998
Q ss_pred CCccchhccCCC-----chHHHHHHHHHHHHhccCCcEEEEEEcCC
Q 028385 80 KGTLDSLMCGTN-----APISASQMLGEVSRLLKPGGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~~~~~~-----~~~~~~~~l~~i~r~LkpgG~~~~~~~~~ 120 (210)
...-.. .+.. -......++..+.++|+|||.+++++...
T Consensus 211 DPP~f~--~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 211 DPPKFG--RGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp CCCSEE--ECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred CCCccc--ccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 644211 1110 12455677888999999999766665443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.8e-10 Score=88.23 Aligned_cols=110 Identities=7% Similarity=-0.017 Sum_probs=78.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC-----CCCCCcccE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-----FFEDESFDA 76 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~-----~~~~~~fD~ 76 (210)
....++||+|||+|-.+..++.. +..+++|+|+|+.+++.|+++.+.. .++.+...+....- ...+++||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 34568999999999999998876 4458999999999999999998533 46777776544321 134668999
Q ss_pred EEECCccchhccC--------------------CC--------chHHHHHHHHHHHHhccCCcEEEE
Q 028385 77 VIDKGTLDSLMCG--------------------TN--------APISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 77 Vi~~~~l~~~~~~--------------------~~--------~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
|+|+..++.-... .. ...-..+++++..+.++..|++.+
T Consensus 140 ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~ 206 (250)
T d2h00a1 140 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 206 (250)
T ss_dssp EEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEE
T ss_pred EEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEE
Confidence 9999887642100 00 012366778888899999998854
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=6.6e-11 Score=88.71 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=77.6
Q ss_pred CCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--C-CCcEEEEcccCCC-C----CCCCCcccEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-S----FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~-~~v~~~~~d~~~~-~----~~~~~~fD~V 77 (210)
..+|||+|||+|..+..+++. ...+++++|.++.+++.|+++.+. . .+++++.+|..+. + .+..++||+|
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccccee
Confidence 457999999999999999875 335899999999999999987742 2 5799999998773 2 1345789999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+.-+. ......+.+..++|||||++++-+
T Consensus 137 fiD~~~~~--------~~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 137 FLDHWKDR--------YLPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EECSCGGG--------HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred eecccccc--------cccHHHHHHHhCccCCCcEEEEeC
Confidence 97643222 223345777889999999886633
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=1.9e-10 Score=86.42 Aligned_cols=103 Identities=11% Similarity=0.150 Sum_probs=81.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-C----CCCCCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-S----FFEDESFD 75 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~----~~~~~~fD 75 (210)
.+..+|||||||+|..+..+++. ...+++.+|.++...+.|++..+.. +++++..+|+.+. + ....++||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 45578999999999999999875 2458999999999999999987422 6799999998662 1 13467899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
+|+..+. ..+....++.+.++|+|||.+++-..
T Consensus 138 ~ifiD~d----------k~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 138 VAVVDAD----------KENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEEECSC----------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEeCC----------HHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 9997532 24567788899999999999977543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.06 E-value=4.2e-10 Score=85.85 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=79.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
+..+|||||||+|.++..+++. +..++++.|..+. ++ .....+++.++.+|+.+ + .|. .|+++.+.++|.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~-~-~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFV-S-IPK--ADAVFMKWICHD 151 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTT-C-CCC--CSCEECSSSSTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEecccccc-c-CCC--cceEEEEEEeec
Confidence 4567999999999999999986 6668999998653 22 22233789999999865 3 443 467788899988
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. +.++..++|+++++.|+|||++++.+..
T Consensus 152 ~-----~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 152 W-----SDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp S-----CHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 7 6788999999999999999999998753
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.06 E-value=3.7e-10 Score=85.62 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=66.5
Q ss_pred CCCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 5 STGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 5 ~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+.+|||||||+|.++..+++.+. +++++|+++.+++.++++..+.++++++.+|+.+++ ++......|+++..++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~-~~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSYKIFGNIPYN 96 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCCEEEEECCGG
T ss_pred CCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc-ccccccceeeeeehhh
Confidence 34567899999999999999999865 899999999999999999877789999999999987 6665555677776653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.96 E-value=5.1e-10 Score=86.91 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=79.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc------------CCCCcEEEEcccCCCCCCCCCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE------------EIPQLKYLQMDVRDMSFFEDESF 74 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~v~~~~~d~~~~~~~~~~~f 74 (210)
...+||.||+|.|..+..+++++..+++.+|+++.+++.|++... ..++++++.+|+...- -.+++|
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~~y 150 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KNNRGF 150 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-HHCCCE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-hccCCC
Confidence 346899999999999999988877789999999999999997552 2368999999998743 235789
Q ss_pred cEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+|+....- .. +....---.+.++.+++.|+|||++++-.
T Consensus 151 DvIi~D~~~-~~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 151 DVIIADSTD-PV--GPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEECCC-CC-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeCCC-CC--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 999974321 11 00000112578999999999999997643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.92 E-value=1.8e-09 Score=78.75 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=76.8
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEEcccCCC-C-CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDM-S-FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~-~-~~~~~~fD~Vi~~~ 81 (210)
..+|||+-||||.++.+.+.+|..+|+.+|.+..+++..+++.+.. ....+...|..+. . ......||+|+...
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 3589999999999999999999999999999999999999987532 2356666665442 1 13355799999877
Q ss_pred ccchhccCCCchHHHHHHHHHHHH--hccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSR--LLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r--~LkpgG~~~~~~ 117 (210)
.+.. .....++..+.. +|+++|.+++-.
T Consensus 124 PY~~--------~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 124 PFHF--------NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CSSS--------CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hHhh--------hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 6543 345566666654 799999886643
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.91 E-value=8.8e-10 Score=86.89 Aligned_cols=107 Identities=20% Similarity=0.234 Sum_probs=79.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCcEEEEcccCCCCCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
...+||.||.|.|..+..+++. +..+++++|+++.+++.|++... +.++++++.+|+...-...+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 3468999999999999999887 45689999999999999998762 227899999999884213457899999
Q ss_pred ECCccchhccCCC-chH--HHHHHHHHHHHhccCCcEEEEE
Q 028385 79 DKGTLDSLMCGTN-API--SASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 79 ~~~~l~~~~~~~~-~~~--~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.... +. ++.. +.. --.++++.+++.|+|||++++-
T Consensus 157 ~D~~-dp--~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 157 IDLT-DP--VGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp EECC-CC--BSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred EeCC-Cc--ccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 6432 11 1111 111 1257899999999999999763
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.91 E-value=5.9e-11 Score=90.62 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
.....|||||||+|.++..+++.+. +|+++|+++.+++.+++++...++++++++|+.+.+ ++...++.|+++..++
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~-~~~~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRYKIVGNIPYH 104 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEEEEEEECCSS
T ss_pred CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccc-cccceeeeEeeeeehh
Confidence 3456799999999999999999875 899999999999998888877789999999999988 8888888899887764
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.89 E-value=1.1e-09 Score=82.46 Aligned_cols=101 Identities=10% Similarity=0.040 Sum_probs=80.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCC-CC-----CCCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SF-----FEDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~-~~-----~~~~~fD 75 (210)
+..+|||+|+++|..+..+++. ...+++.+|.++...+.|++..+.. ++++++.+|+.+. +. ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4568999999999999999874 2358999999999999999988532 5799999998763 21 1356899
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+|+..+. .......++.+.++|+|||.+++-.
T Consensus 139 ~iFiDa~----------k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDAD----------KDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECSC----------STTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEeccc----------hhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 9996432 2456788889999999999997653
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=2.9e-08 Score=73.46 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 9 RDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.+|+|+|+|.|..+..++-. +..+++.+|.+..-+...++... +..|+++++..+++.. .+.+||+|++..+
T Consensus 67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--~~~~fD~V~sRA~--- 141 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF--- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS---
T ss_pred CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc--cccccceehhhhh---
Confidence 57999999999999998864 66699999999877776666543 3368999999999875 4678999998755
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.....++.-+...++++|.+++.--
T Consensus 142 --------~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 --------ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp --------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred --------cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5567888889999999999988763
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=2.9e-09 Score=83.03 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=79.6
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+||-||.|.|..+..++++ +..+++++|+++.+++.|++... ..++++++.+|+...-.-.+++||+|+.
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 3468999999999999999987 45689999999999999998652 2378999999998842134678999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...-... +....---.+.++.+++.|+|||++++-.
T Consensus 169 D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 169 DSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EC------------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 4321110 00000013578999999999999996543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.77 E-value=6e-09 Score=82.63 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc------CCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCCCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD------GYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~------~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~fD~Vi~ 79 (210)
...+|||.+||+|.++..+.+. ...+++|+|+++.++..|+.+... ..+..+..+|.... .+.++||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN--LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC--CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc--ccccccccccc
Confidence 3457999999999999887653 223699999999999999877631 24566777776554 35678999999
Q ss_pred CCccchhcc-----------CCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 80 KGTLDSLMC-----------GTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 80 ~~~l~~~~~-----------~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+..+..... ...........+..+.+.|+|||++.++.
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 977632100 00011123457999999999999987765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.76 E-value=6.6e-09 Score=81.44 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||-||.|.|..+..++++ +..+++.+|+++.+++.+++.... .++++++.+|+...-....++||+|+..
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D 186 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 186 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence 458999999999999999987 456899999999999999987642 2789999999887321346789999975
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
..- .. +....---.++++.+++.|+|||+++.-
T Consensus 187 ~~d-p~--~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 187 SSD-PV--GPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp CC----------------HHHHHHHHEEEEEEEEEE
T ss_pred CCC-CC--CcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 331 11 1011112456789999999999999765
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=1.1e-08 Score=78.97 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=80.5
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||-||.|.|..+..++++ +..+++.+|+++.+++.|++... +.++++++.+|+...-.-.+++||+|+..
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence 458999999999999999987 56689999999999999998752 23789999999877321346789999976
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
..- .. +....---.+.++.+++.|+|||+++.-
T Consensus 156 ~~~-p~--~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 156 STE-PV--GPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp CSS-CC--SCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CC--CcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 431 11 1000012457899999999999999764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.72 E-value=1.9e-08 Score=78.30 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=81.0
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCC-CCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMS-FFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~-~~~~~~fD~Vi 78 (210)
...+||-||-|.|..+..+++. +..+++++|+++.+++.+++... ..++++++.+|+...- ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 3468999999999999999987 55689999999999999998652 2378999999987632 13467899999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.... +.. +....---.+.++.+++.|+|||++++-.
T Consensus 160 ~D~~-dp~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 160 VDSS-DPI--GPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp ECCC-CTT--SGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCC--CcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 7432 111 10011123578999999999999997653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.72 E-value=4.4e-08 Score=71.01 Aligned_cols=114 Identities=15% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
...+.++|..+|.|..+..+++... +|+|+|.++.++..+++... +++.+++.+..++. .+..+.+|.|+...
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~~--~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLHL--PGLTVVQGNFRHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--TTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhccc--cceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence 3446799999999999999999754 89999999999999987643 68899999888854 24457899998765
Q ss_pred ccchhc--cCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 82 TLDSLM--CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 82 ~l~~~~--~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+.... ...+........|....++|++||.++++++....
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E 136 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE 136 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence 443221 11233346677899999999999999999986533
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.1e-08 Score=79.43 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=78.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCcEEEEcccCCCCCCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~ 80 (210)
..+||-||.|.|..+..+.+. +..+++.+|+++.+++.|++... ..++++++.+|+...-.-..++||+|++.
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D 158 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 158 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence 458999999999999999987 56689999999999999998752 23799999999887321345789999975
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.. +.. +....---.+.++.+++.|+|||.+++-.
T Consensus 159 ~~-~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 159 SS-DPM--GPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp CC--------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCC--CcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 32 211 10011123467999999999999997654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.57 E-value=7.1e-08 Score=71.71 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 84 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~ 84 (210)
...+|||.|||+|.++..+.+. ....++|+|+++.++..+ ....+.++|..... ....||+|+++..+.
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~--~~~~fd~ii~npP~~ 89 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--PGEAFDLILGNPPYG 89 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--CSSCEEEEEECCCCC
T ss_pred CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc--cccccceecccCccc
Confidence 3468999999999998888764 334699999998654332 33567788876654 457899999987764
Q ss_pred hhccCC----------------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 85 SLMCGT----------------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 85 ~~~~~~----------------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...... ....-....+....+.||+||++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 90 IVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp CBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 321110 000123466788999999999988876
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=3.2e-07 Score=73.23 Aligned_cols=99 Identities=9% Similarity=0.136 Sum_probs=74.1
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCC---CCCCCcccEEEEC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS---FFEDESFDAVIDK 80 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~ 80 (210)
.+..+|||+-||.|.++..+++... +|+|+|.++.+++.|+++.+ +..|+.|+.+|..+.- ......||+|+..
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD 289 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 289 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCceEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence 3456799999999999999988654 89999999999999999864 4579999999987732 1235679999863
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. |+....+.++.+.+. +|.-++++.
T Consensus 290 P----------PR~G~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 290 P----------ARAGAAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp C----------CTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred C----------CCccHHHHHHHHHHc-CCCEEEEEe
Confidence 2 344445667777764 666555443
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=1.7e-07 Score=67.71 Aligned_cols=105 Identities=21% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAV 77 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~V 77 (210)
...+|||+||+.|.|+..+.+. ....++++|..+ .+..+++.++++|+.+.. ....+.+|+|
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlV 92 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVV 92 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhhhccCcceeEE
Confidence 3457999999999999988875 445799999765 233478899999987732 1346789999
Q ss_pred EECCccchhccCCC------chHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 78 IDKGTLDSLMCGTN------APISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 78 i~~~~l~~~~~~~~------~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
++....+- .|.. ...-....+.-+.++||+||.|++=.+....
T Consensus 93 lSD~ap~~--sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 93 MSDMAPNM--SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EECCCCCC--CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred Eecccchh--cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 99866432 1111 1123446677788999999999987776433
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.2e-07 Score=72.20 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=53.1
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS 67 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~ 67 (210)
+...|||||||+|.++..+++.+. +++++|+++.+++..+++....++++++.+|+.++.
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN 80 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC
T ss_pred CCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc
Confidence 345799999999999999998865 899999999999999887765688999999998865
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4e-07 Score=70.11 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=61.5
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
....|||||+|+|.++..+++.+. +++++|+++.+++..+++.... .+++++.+|+.... ++ .++.|+++-.+
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-~~--~~~~vV~NLPY 96 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP--FFDTCVANLPY 96 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--CCSEEEEECCG
T ss_pred CCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-hh--hhhhhhcchHH
Confidence 345799999999999999999875 8999999999999999887543 57999999998866 43 35678887665
Q ss_pred c
Q 028385 84 D 84 (210)
Q Consensus 84 ~ 84 (210)
+
T Consensus 97 ~ 97 (278)
T d1zq9a1 97 Q 97 (278)
T ss_dssp G
T ss_pred H
Confidence 3
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.42 E-value=2.2e-07 Score=69.82 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCCEEEeCCCCchhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPSIVMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
+.+|||||++.|..+..++.. ..++++++|+++....... ...++++++++|..+.. .+....+|+|+.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SDMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---ccccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 457999999999776655531 3458999999875432221 12278999999987643 234556888776
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-+. |+- .....-+ +...+|++||++++-+.
T Consensus 158 D~~-H~~-------~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DNA-HAN-------TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ESS-CSS-------HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCC-cch-------HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 544 322 2222223 46789999999977653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.41 E-value=2e-07 Score=70.13 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=77.3
Q ss_pred CCCEEEeCCCCchhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhc--CCCCcEEEEcccCCCCC--CCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPSIVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF--FEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~--~~~~v~~~~~d~~~~~~--~~~~~fD~Vi~~~~ 82 (210)
..+|+|||+|.|..+..++- .+..+++.+|.+..-+...+.-.. +..++.++...++++.. -..+.||+|++..+
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv 150 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence 45799999999999998876 466789999999876665554432 34788999988877541 12468999999754
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.....++.-+...+++||.+++.-
T Consensus 151 -----------a~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 151 -----------ARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp -----------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----------hCHHHHHHHHhhhcccCCEEEEEC
Confidence 567788999999999999998775
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=3.5e-06 Score=65.92 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=80.8
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
...+|||+.||.|.=+..++.. ....+++.|.++.-+...+++.+. ..++.+...|....+ .....||.|+....
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~-~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc-cccccccEEEEccc
Confidence 3458999999999888777764 344799999999999988877643 367777778877766 56778999987433
Q ss_pred cchhccC-C-------Cch-------HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCG-T-------NAP-------ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~-~-------~~~-------~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.....- . ... ....+++.+..+.|||||.++-.+++
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 2211100 0 011 24557789999999999998877776
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.18 E-value=9.5e-06 Score=66.03 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=78.5
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C----------CCcEEEEeCCHHHHHHHHHhhc--C--CCCcEEEEcccCCCC
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G----------YEDIVNIDISSVAIDMMKMKYE--E--IPQLKYLQMDVRDMS 67 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~----------~~~v~~vD~s~~~~~~a~~~~~--~--~~~v~~~~~d~~~~~ 67 (210)
....+|+|..||+|.+...+.+. . ...+.|+|+++.+...|+.+.. . ..+..+...|....
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~- 239 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK- 239 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS-
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh-
Confidence 34568999999999999887653 1 1259999999999999987652 2 13456777777654
Q ss_pred CCCCCcccEEEECCccchhccCC----------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 68 FFEDESFDAVIDKGTLDSLMCGT----------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 68 ~~~~~~fD~Vi~~~~l~~~~~~~----------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+...||+|+++..+..-.... .........+..+.+.|++||++.++.
T Consensus 240 -~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 240 -EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp -CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3567899999998774221110 122234568999999999999987765
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.14 E-value=1.3e-06 Score=70.02 Aligned_cols=100 Identities=15% Similarity=0.030 Sum_probs=73.2
Q ss_pred CCCCEEEeCCCCchhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcC--C---------------CCcEEEEcccCCCCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEE--I---------------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~--~---------------~~v~~~~~d~~~~~~ 68 (210)
+..+|||..||+|..+..++. .+..+|+..|+|+.+++.++++.+. . ..+.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 456899999999999998766 4666899999999999999988631 1 124556666544221
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
...+.||+|.... | .....+++...+.++.||.+.++.
T Consensus 125 ~~~~~fDvIDiDP------f-----Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP------F-----GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC------S-----SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC------C-----CCcHHHHHHHHHHhccCCEEEEEe
Confidence 2346799887532 2 334568899999999999997765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4e-05 Score=59.16 Aligned_cols=112 Identities=7% Similarity=-0.049 Sum_probs=75.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCcEEEEcccCCCCCC--CCCcccEEEEC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF--EDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~--~~~v~~~~~d~~~~~~~--~~~~fD~Vi~~ 80 (210)
...+|||++||.|.=+..++.. +...++++|+++.-++.++++.+. ..++.+...|...+... ..+.||.|+..
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~D 173 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLD 173 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEEC
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeec
Confidence 3457999999999988888764 445899999999999999888753 37889999998876411 12569999986
Q ss_pred Cccchhcc-------------CCCch---H-HHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 81 GTLDSLMC-------------GTNAP---I-SASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 81 ~~l~~~~~-------------~~~~~---~-~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..-..... ..... . ...+++.+.. .++|||.++-.+++
T Consensus 174 aPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 174 PSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp CCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred CcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 43211100 00000 1 1234555555 47999988777776
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=7.6e-06 Score=63.09 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
....+|||+.+|.|.=+..+++.. ...++++|.++.-+...+++.+.. .++.....|.........+.||.|+....
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEecc
Confidence 344689999999999988888753 347999999999999888887543 44444444433221123568999997543
Q ss_pred cchhccC-CC--------------chHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCG-TN--------------APISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~-~~--------------~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-.....- .. -..-..++|.+..+.|||||.++-.+++
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 2211100 00 0123567899999999999998887776
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00014 Score=60.58 Aligned_cols=112 Identities=9% Similarity=-0.019 Sum_probs=71.8
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc----C---------------CCcEEEEeCCHHHHHHHHHhhc--CC-C----CcEEE
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD----G---------------YEDIVNIDISSVAIDMMKMKYE--EI-P----QLKYL 59 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~----~---------------~~~v~~vD~s~~~~~~a~~~~~--~~-~----~v~~~ 59 (210)
....+|+|..||+|.+.....+. . ...++|+|+++.+...|+.+.- .. . .-.+.
T Consensus 163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~ 242 (524)
T d2ar0a1 163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 242 (524)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence 33468999999999998776552 1 1258999999999999887652 11 1 11233
Q ss_pred EcccCCCCCCCCCcccEEEECCccchhccCC-------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 60 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGT-------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 60 ~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~~~-------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
..+....+......||+|+++..+..-.... ........++..+.+.||+||++.++.
T Consensus 243 ~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 243 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 3443322112456899999987763211000 111223458999999999999987765
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.53 E-value=3.3e-05 Score=57.72 Aligned_cols=106 Identities=6% Similarity=-0.114 Sum_probs=60.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-cCC--CCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-EEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~-~~~--~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
..++|+|+|||.|.++..++... ...+.|+++--..-+ .... ... +-+++...+.. .. .+.+..|+|+|...
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~~~~~~~~ni~~~~~~~dv-~~-l~~~~~D~vlcDm~ 141 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPIPMSTYGWNLVRLQSGVDV-FF-IPPERCDTLLCDIG 141 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCCCSTTGGGEEEECSCCT-TT-SCCCCCSEEEECCC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCccccccccccccchhhhhH-Hh-cCCCcCCEEEeeCC
Confidence 34579999999999999998763 236777776321000 0000 000 11233322221 11 45788999999743
Q ss_pred cchhccCCCch--HHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 83 LDSLMCGTNAP--ISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 83 l~~~~~~~~~~--~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
-. .+.... ....++++-+.++|+|||.|++=-+.
T Consensus 142 es---s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 142 ES---SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CC---CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CC---CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 21 111111 12235677888999999998775444
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.47 E-value=0.00016 Score=56.49 Aligned_cols=58 Identities=14% Similarity=0.068 Sum_probs=49.4
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 65 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~ 65 (210)
....|||||+|.|.++..+++. ...+++++|+++.+.+..++...+ .++.++.+|+..
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-SPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-SSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-CCcEEEeCchhh
Confidence 3456999999999999999886 345899999999999999888754 679999999865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.34 E-value=0.00074 Score=47.67 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=64.6
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||=+|||. |..+..+++. +..+|+++|.++.-++.+++.-. .+++...-.+.. ......+|+|+.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa----~~~i~~~~~~~~~~v~~~t~g~G~D~vid 102 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA----TDILNYKNGHIEDQVMKLTNGKGVDRVIM 102 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC----SEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc----cccccccchhHHHHHHHHhhccCcceEEE
Confidence 344788899987 7888888887 55589999999999999987532 122222211110 012345999987
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.-.- ...+++..++++|+|.++++.+.
T Consensus 103 ~~g~-------------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 103 AGGG-------------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp CSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred ccCC-------------HHHHHHHHHHHhcCCEEEEEeec
Confidence 4322 23467778999999999887543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.33 E-value=0.00015 Score=54.44 Aligned_cols=78 Identities=8% Similarity=-0.070 Sum_probs=58.3
Q ss_pred CCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---c-C-------CCCcEEEEcccCCCCCCCCCccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---E-E-------IPQLKYLQMDVRDMSFFEDESFD 75 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~---~-~-------~~~v~~~~~d~~~~~~~~~~~fD 75 (210)
...+|||.-||.|..+..++..|. +|+++|.++.+....+... . + ..+++++++|..+.-.-..+.||
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 335899999999999999999886 8999999998766555433 1 1 13789999998773213356799
Q ss_pred EEEECCccch
Q 028385 76 AVIDKGTLDS 85 (210)
Q Consensus 76 ~Vi~~~~l~~ 85 (210)
+|+...++.+
T Consensus 167 vIYlDPMFp~ 176 (250)
T d2oyra1 167 VVYLDPMFPH 176 (250)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9997666543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.07 E-value=0.0019 Score=45.01 Aligned_cols=95 Identities=16% Similarity=0.059 Sum_probs=62.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---------CCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---------FFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---------~~~~~~fD~V 77 (210)
..+||-+|||. |.++..+++....+|+++|.++.-++.+++.... .. ...+-.... ....+.+|+|
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~---~~-~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD---VT-LVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS---EE-EECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc---EE-EeccccccccchhhhhhhcccccCCcee
Confidence 34688899984 6777777766334899999999999999875421 11 222211110 0113568999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+..-. ....+....++++++|.+++....
T Consensus 103 id~~g-------------~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-------------NEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC-------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC-------------ChHHHHHHHHHHhcCCceEEEecC
Confidence 86422 235577788999999999876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.04 E-value=0.0015 Score=46.12 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCC--------CCCCCCcccEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM--------SFFEDESFDAV 77 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~--------~~~~~~~fD~V 77 (210)
..+||-+|||. |.+...+++. |..+|+++|.++..++.+++.-.. .++...-.+. .......+|+|
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD----LTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS----EEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCEEEEECCCccchhheecccccccccccccccccccccccccccce----EEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 35789999975 6777777776 555799999999999999765321 1221111110 00123469999
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+..-.- ...++...++|++||+++++-..
T Consensus 105 id~vG~-------------~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 105 LEATGD-------------SRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp EECSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred eecCCc-------------hhHHHHHHHHhcCCCEEEEEeec
Confidence 864221 23467788999999999776543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.00 E-value=0.0015 Score=45.82 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=62.8
Q ss_pred CCCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEEC
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 80 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~ 80 (210)
...+||=+|||. |..+..+++. +...++.+|.++.-++.+++.-. ..++..+-.+.. .+.++.||+|+..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga----~~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC----eEEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 345688899975 4455555554 67678899999999999887532 233433322211 1234579999964
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-. ....++...++++|+|+++++..
T Consensus 104 ~G-------------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 104 TG-------------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp SC-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred CC-------------cHHHHHHHHhcccCceEEEEEee
Confidence 22 23557788999999999987643
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.88 E-value=0.0012 Score=51.89 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=73.2
Q ss_pred CCCCEEEeCCCCchhHHHHHHc-----------------CCCcEEEEeCCHHHHHHHHHhhcCC----CCc--EEEEccc
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD-----------------GYEDIVNIDISSVAIDMMKMKYEEI----PQL--KYLQMDV 63 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~-----------------~~~~v~~vD~s~~~~~~a~~~~~~~----~~v--~~~~~d~ 63 (210)
...+|+|+||.+|..+..+.+. +.-+|..-|.-.+--...=+..... +++ .-+.+.+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 3478999999999888433221 1114666665443333222222111 122 2233444
Q ss_pred CCCCCCCCCcccEEEECCccchhc---cCC-----------------------CchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 64 RDMSFFEDESFDAVIDKGTLDSLM---CGT-----------------------NAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 64 ~~~~~~~~~~fD~Vi~~~~l~~~~---~~~-----------------------~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-+-- ||+++.|+++++.++||+. ++. ....|...+|+.-.+-|+|||+++++.
T Consensus 131 Y~rL-fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 131 YGRL-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCC-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhc-CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4433 8999999999999999974 110 123578889999999999999999988
Q ss_pred cCCch
Q 028385 118 YGDPK 122 (210)
Q Consensus 118 ~~~p~ 122 (210)
++++.
T Consensus 210 ~gr~~ 214 (359)
T d1m6ex_ 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred eccCC
Confidence 77543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.0035 Score=43.68 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=62.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi 78 (210)
.-+||=+|||. |.++..+++. +..+|+++|.++.-++.|++.-.. .+...+-.+.. .-....+|+|+
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~----~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD----LVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS----EEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc----ccccccccccccccccccccCCCCceEEE
Confidence 34688899976 5555666655 666899999999999999865321 22222222110 01134689998
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
..-. -...++...+.+++||++++....
T Consensus 103 d~~G-------------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 103 ECTG-------------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp ECSC-------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eccC-------------CchhHHHHHHHhcCCCEEEEEecC
Confidence 7422 234688889999999999887654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.68 E-value=0.0071 Score=41.72 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=59.5
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
++|.=||+|. +.++..+.+.+. +|++.|.+++.++.+++... +.....+.+.. ...|+|+..-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~----~~~~~~~~~~~-----~~~DiIilav----- 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQL----VDEAGQDLSLL-----QTAKIIFLCT----- 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTS----CSEEESCGGGG-----TTCSEEEECS-----
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhc----cceeeeecccc-----cccccccccC-----
Confidence 4677888873 556666767777 89999999998888776431 22222222222 3568888643
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+.....++++++...++++-.++-+
T Consensus 66 -----p~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 66 -----PIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp -----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred -----cHhhhhhhhhhhhhhcccccceeec
Confidence 3366788999999999988876433
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.60 E-value=0.004 Score=49.04 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=54.9
Q ss_pred CCCCEEEeCCCCchhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEE
Q 028385 7 GTRDTCRRAAPSIVMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG~G~~~~~l~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi 78 (210)
+..+|+|+|+|+|.++..+++. ...+++.+|.|+...+..+++.+...++.+. .++..++ + ..-+|+
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~-~~~~~~~---~-~~g~ii 153 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVP---E-GPAVIL 153 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSC---C-SSEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceec-cChhhcc---c-CCeEEE
Confidence 3457999999999999887653 1235899999999888888777665666654 3344433 1 236889
Q ss_pred ECCccchhc
Q 028385 79 DKGTLDSLM 87 (210)
Q Consensus 79 ~~~~l~~~~ 87 (210)
++..+++++
T Consensus 154 aNE~fDAlP 162 (365)
T d1zkda1 154 ANEYFDVLP 162 (365)
T ss_dssp EESSGGGSC
T ss_pred ecccCcccc
Confidence 998888874
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.47 E-value=0.02 Score=43.45 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=67.5
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhcc
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 88 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~~ 88 (210)
++|||+=||-|.++.-+.+.|+..+.++|+++.+.+.-+.+.. -.+..+|+.++....-...|+++....-..++.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ 76 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPCQSWSE 76 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGGSCCCSEEEECCCCTTTSS
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhHcccccEEeeccccccccc
Confidence 5799999999999988877788667899999999988887763 356789998875112236899998766554421
Q ss_pred -CC-----CchHHHHHHHHHHHHhccCC
Q 028385 89 -GT-----NAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 89 -~~-----~~~~~~~~~l~~i~r~Lkpg 110 (210)
+. +.+..+.-.+-++.+.++|.
T Consensus 77 ag~~~g~~d~r~~l~~~~~~~i~~~~Pk 104 (324)
T d1dcta_ 77 GGSLRGIDDPRGKLFYEYIRILKQKKPI 104 (324)
T ss_dssp SSCCCCSSSHHHHHHHHHHHHHHHHCCS
T ss_pred ccccccccccccchHHHHHHHHHhhCCc
Confidence 11 22223333344455666885
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.46 E-value=0.0027 Score=45.48 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=65.5
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-------CCCCCcccEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFDAVI 78 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~fD~Vi 78 (210)
..+||-+|||. |..+..+++. +..+|+++|.++.-++.|++.-. .... +-.+.+ ......+|+++
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga-----~~~~-~~~~~~~~~~i~~~t~g~g~D~vi 99 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF-----EIAD-LSLDTPLHEQIAALLGEPEVDCAV 99 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-----EEEE-TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc-----cEEE-eCCCcCHHHHHHHHhCCCCcEEEE
Confidence 34799999998 6666666654 66689999999999999987632 1111 111111 01244689999
Q ss_pred ECCccchhccCC--CchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 79 DKGTLDSLMCGT--NAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 79 ~~~~l~~~~~~~--~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..-......... .......+.++...++++|||++.++-.
T Consensus 100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 753321100000 0112235689999999999999987643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.41 E-value=0.008 Score=42.07 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=63.9
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~~ 80 (210)
..||=+|||. |.++..+++. +...|+.+|.++.-++.+++.-. ..++...-.+.. ....+.+|+|+..
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC----CcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 4688899988 8888888876 66689999999999888887532 122222111110 0124569999864
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
- .....+.+..+.+++| |.++++-.
T Consensus 106 ~-------------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-------------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp S-------------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred c-------------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 2 2345688899999996 99987654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.38 E-value=0.0055 Score=42.69 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=62.4
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECC
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKG 81 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~ 81 (210)
...||-+|+|. |.++..+++. +...++++|.++.-++.+++... ..++..+-.... ....+.+|+|+...
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA----DHVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC----SEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc----ceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 34688899976 5555666654 66689999999998888887542 233332211111 12345699999743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
. -...++...+.|++||+++++-+.
T Consensus 109 g-------------~~~~~~~a~~~l~~~G~iv~~G~~ 133 (172)
T d1h2ba2 109 G-------------SQATVDYTPYLLGRMGRLIIVGYG 133 (172)
T ss_dssp C-------------CHHHHHHGGGGEEEEEEEEECCCS
T ss_pred C-------------cchHHHHHHHHHhCCCEEEEEeCc
Confidence 2 233578889999999999876543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.29 E-value=0.0011 Score=46.27 Aligned_cols=96 Identities=15% Similarity=0.049 Sum_probs=60.5
Q ss_pred CCCCEEEeCCC-CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCCCCCCCcccEEEECCcc
Q 028385 7 GTRDTCRRAAP-SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTL 83 (210)
Q Consensus 7 ~~~~vLdiGcG-~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~fD~Vi~~~~l 83 (210)
...+||-+|+| .|.++..+++. |. +++++|.+++.++.+++.-.. .++.. +-.+......+.||+|+..-.-
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~----~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGAD----HYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS----EEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCc----EEeeccchHHHHHhhhcccceEEEEecC
Confidence 34578899998 47777777766 55 899999999999998875321 22222 1111110224579998874221
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
.+- ..+....++|+|+|+++++..
T Consensus 102 ~~~-----------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 102 LTD-----------IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp STT-----------CCTTTGGGGEEEEEEEEECCC
T ss_pred Ccc-----------chHHHHHHHhhccceEEEecc
Confidence 110 113456889999999987654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.09 E-value=0.024 Score=39.02 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=60.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
+|+=||||. +.++..+.+.+. .+|+++|.+++.++.+++... +.....+... ......|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----~~~~~~~~~~---~~~~~~dlIila~----- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----IDEGTTSIAK---VEDFSPDFVMLSS----- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----CSEEESCGGG---GGGTCCSEEEECS-----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----chhhhhhhhh---hhccccccccccC-----
Confidence 488899985 456666666654 479999999999999887631 2222222222 1234579888643
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+......++.++.+.++++..+.-+
T Consensus 71 -----p~~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 71 -----PVRTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp -----CHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred -----Cchhhhhhhhhhhcccccccccccc
Confidence 3356788899999999988766433
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.09 E-value=0.00093 Score=46.71 Aligned_cols=101 Identities=9% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCCCCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCc
Q 028385 4 PSTGTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 82 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~ 82 (210)
+...+.+|+=||+|. |..+...+..-..+|+.+|.+++.++..+..+.. ++.+...+-..+. -.-...|+||..-.
T Consensus 28 ~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~-~~~~~aDivI~aal 104 (168)
T d1pjca1 28 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE-TAVAEADLLIGAVL 104 (168)
T ss_dssp TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH-HHHHTCSEEEECCC
T ss_pred CCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH-HhhccCcEEEEeee
Confidence 344578999999997 6666666665334999999999999988877642 4555554443332 11235799998644
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
+- + .+.+.-+-+++.+.+|||..++
T Consensus 105 ip----G---~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 105 VP----G---RRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CT----T---SSCCCCBCHHHHTTSCTTCEEE
T ss_pred cC----C---cccCeeecHHHHhhcCCCcEEE
Confidence 21 1 1233344677889999999873
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.99 E-value=0.034 Score=42.38 Aligned_cols=100 Identities=11% Similarity=-0.016 Sum_probs=67.3
Q ss_pred CCCCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccch
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~ 85 (210)
...++|||+=||-|.++..+.+.|..-+.++|+++.+++.-+.+.... .++|+.++....-..+|+++.......
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~~~~~~Dll~ggpPCq~ 83 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEKTIPDHDILCAGFPCQA 83 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGGGSCCCSEEEEECCCTT
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchhhcceeeeeecccccch
Confidence 456899999999999999998888866788999999999998888432 247777754112235899998765443
Q ss_pred hccC-C-----CchHHHHHHHHHHHHhccCC
Q 028385 86 LMCG-T-----NAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 86 ~~~~-~-----~~~~~~~~~l~~i~r~Lkpg 110 (210)
++.. . +++..+...+-++.+.++|.
T Consensus 84 fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~ 114 (327)
T d2c7pa1 84 FSISGKQKGFEDSRGTLFFDIARIVREKKPK 114 (327)
T ss_dssp TCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS
T ss_pred hhhhhhhcCCcccchhHHHHHHHHHhccCCc
Confidence 3211 1 22222333344445556775
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.96 E-value=0.0086 Score=41.47 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=62.1
Q ss_pred CCCCEEEeCCC--CchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEE
Q 028385 7 GTRDTCRRAAP--SIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVI 78 (210)
Q Consensus 7 ~~~~vLdiGcG--~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi 78 (210)
...+||=+||+ .|.++..+++. +...|+.+|.++.-++.+++.-.. .++..+-.+.. ....+.||+|+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD----YVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc----eeeccCCcCHHHHHHHHhhcccchhhh
Confidence 33568999974 35555555554 666899999999999988875321 23332222211 12345699999
Q ss_pred ECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 79 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
.... -...++...+.++|||.++++.+.
T Consensus 103 d~~g-------------~~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 103 DLNN-------------SEKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp ESCC-------------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred cccc-------------cchHHHhhhhhcccCCEEEEeccc
Confidence 7432 234567778999999999877543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.012 Score=40.84 Aligned_cols=92 Identities=11% Similarity=0.104 Sum_probs=59.2
Q ss_pred CCCCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEE
Q 028385 7 GTRDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 7 ~~~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...+||-.|+ |.|..+..+++.-..++++++.+++-.+.+++.-. -.++...-.++. ....+.+|+|++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----HEVFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCc----ccccccccccHHHHhhhhhccCCceEEee
Confidence 3347999997 34667777777633489999999988888876432 122221111110 123567999997
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. . . ...+++..++|+|+|+++.+
T Consensus 104 ~-----~-------g--~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 104 M-----L-------A--NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp S-----C-------H--HHHHHHHHHHEEEEEEEEEC
T ss_pred c-----c-------c--HHHHHHHHhccCCCCEEEEE
Confidence 3 2 2 24578888999999999775
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.76 E-value=0.0066 Score=41.91 Aligned_cols=93 Identities=9% Similarity=0.057 Sum_probs=57.2
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~~ 82 (210)
..+||=+|+|. |.++..+++....+|+++|.++.-++.+++.-. ..++..+-.+.. ....+.+|.|++...
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~ 103 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----SLTVNARQEDPVEAIQRDIGGAHGVLVTAVS 103 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----cccccccchhHHHHHHHhhcCCccccccccc
Confidence 34688899876 666667776633589999999999998886532 123322222210 011233444443211
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...++...++|++||+++++-.
T Consensus 104 --------------~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 104 --------------NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp --------------HHHHHHHHTTEEEEEEEEECCC
T ss_pred --------------chHHHHHHHHhcCCcEEEEEEe
Confidence 2457778899999999977643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.01 Score=41.11 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=59.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
..+||=+|||. |.++..+++.-..+++++|.++.-.+.+++.-.. .++...-.+......+.+|+|+..-.-.
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad----~~i~~~~~~~~~~~~~~~D~vid~~g~~-- 104 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD----EVVNSRNADEMAAHLKSFDFILNTVAAP-- 104 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS----EEEETTCHHHHHTTTTCEEEEEECCSSC--
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc----EEEECchhhHHHHhcCCCceeeeeeecc--
Confidence 34688899875 6777777776334788899999888887765321 2222211111112345799998743221
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
..++...+.++++|+++++..
T Consensus 105 -----------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 105 -----------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -----------CCHHHHHTTEEEEEEEEECCC
T ss_pred -----------hhHHHHHHHHhcCCEEEEecc
Confidence 125667789999999987643
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.012 Score=45.08 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=55.7
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCC--cEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYE--DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
+++|+|+-||.|.++..+.+.|.. -+.++|+++.+++.-+.+. ++..+.+.|+.++. .++...+|+++.....
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPC 78 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhHcCCCCccEEEeeccc
Confidence 578999999999998887666652 3789999999999888876 55677888888764 1223368999987665
Q ss_pred chh
Q 028385 84 DSL 86 (210)
Q Consensus 84 ~~~ 86 (210)
..+
T Consensus 79 q~f 81 (343)
T d1g55a_ 79 QPF 81 (343)
T ss_dssp ---
T ss_pred ccc
Confidence 444
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.37 E-value=0.066 Score=37.06 Aligned_cols=96 Identities=7% Similarity=-0.051 Sum_probs=58.7
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~ 79 (210)
..+||=+|||. |..+..+++. +..+|+++|.++.-++.+++.-. ..++...-.+.. ...++.+|+|+.
T Consensus 28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa----~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC----cEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 34689999986 4455555554 76789999999999999987532 223322111110 022456899986
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccC-CcEEEEEEcCC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKP-GGIYMLITYGD 120 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~Lkp-gG~~~~~~~~~ 120 (210)
.-. ....+.+....+++ +|.++++-+..
T Consensus 104 ~~g-------------~~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 104 CAG-------------RIETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp CSC-------------CHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred cCC-------------CchHHHHHHHHHHHhcCceEEEEEec
Confidence 422 23345556666654 69988876544
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.13 E-value=0.011 Score=43.92 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=76.0
Q ss_pred CCCCCCCEEEeCCCCchhHHHHHHcC-----------------------------------------CCcEEEEeCCHHH
Q 028385 4 PSTGTRDTCRRAAPSIVMSEDMVKDG-----------------------------------------YEDIVNIDISSVA 42 (210)
Q Consensus 4 ~~~~~~~vLdiGcG~G~~~~~l~~~~-----------------------------------------~~~v~~vD~s~~~ 42 (210)
.-.+...++|--||+|.+..+.+... ...+.|.|+++.+
T Consensus 47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a 126 (249)
T d1o9ga_ 47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA 126 (249)
T ss_dssp SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence 34556679999999999998776310 0136788999999
Q ss_pred HHHHHH---hhc--CC-CCcEEEEcccCCCCC----CCCCcccEEEECCccchhcc-C-CCchHHHHHHHHHHHHhccCC
Q 028385 43 IDMMKM---KYE--EI-PQLKYLQMDVRDMSF----FEDESFDAVIDKGTLDSLMC-G-TNAPISASQMLGEVSRLLKPG 110 (210)
Q Consensus 43 ~~~a~~---~~~--~~-~~v~~~~~d~~~~~~----~~~~~fD~Vi~~~~l~~~~~-~-~~~~~~~~~~l~~i~r~Lkpg 110 (210)
++.|++ +.+ .. ..+++.+.|+.+... .+....++||++...-.-.- . ....+.+.++...+.+++...
T Consensus 127 i~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~ 206 (249)
T d1o9ga_ 127 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 206 (249)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCC
Confidence 988853 332 22 568889998866330 13456799999876654321 1 123466788888899999766
Q ss_pred cEEEEEE
Q 028385 111 GIYMLIT 117 (210)
Q Consensus 111 G~~~~~~ 117 (210)
..++++.
T Consensus 207 s~~~it~ 213 (249)
T d1o9ga_ 207 AVIAVTD 213 (249)
T ss_dssp CEEEEEE
T ss_pred cEEEEeC
Confidence 6665553
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.93 E-value=0.024 Score=42.85 Aligned_cols=43 Identities=2% Similarity=-0.002 Sum_probs=39.0
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
..|||.=||+|+.+....+.+. +.+|+|++++.++.|++|..+
T Consensus 252 diVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 252 DLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred CEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 5799999999999998888876 899999999999999999854
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.84 E-value=0.008 Score=44.80 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=41.1
Q ss_pred EEEEcccCCC-CCCCCCcccEEEECCccchhc----cCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 57 KYLQMDVRDM-SFFEDESFDAVIDKGTLDSLM----CGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 57 ~~~~~d~~~~-~~~~~~~fD~Vi~~~~l~~~~----~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-|+++|..+. ..++++++|+|+....+.--. ....-..-....+.++.|+|||+|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 3667777663 347899999999987643100 000112456788999999999999987743
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.61 E-value=0.17 Score=38.21 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=70.4
Q ss_pred CCCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----CCCcEEEEcccCCCC-------CCCCCccc
Q 028385 8 TRDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMS-------FFEDESFD 75 (210)
Q Consensus 8 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~v~~~~~d~~~~~-------~~~~~~fD 75 (210)
...|+.+|||--.-...+...+...++-+|. |++++.-++...+ ..+..++..|+.+.. ++..+.--
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 3457789999877665542223335666663 7777765555532 145677888877521 23344556
Q ss_pred EEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 76 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
++++-+++.++ +.+...++++.+.+...||+.+++-
T Consensus 169 l~i~EGvl~YL-----~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 169 AWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp EEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred EEEEccccccC-----CHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 78888888888 7789999999999999999998654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.48 E-value=0.077 Score=36.07 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=56.0
Q ss_pred CCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECCc
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKGT 82 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~~ 82 (210)
..+||=.|+|+ |.....+++....+|+++|.++.-++.+++.-.. .+....-.+.. ....+.+|+|++. .
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 102 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD----LVVNPLKEDAAKFMKEKVGGVHAAVVTA-V 102 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS----EEECTTTSCHHHHHHHHHSSEEEEEESS-C
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcc----eecccccchhhhhcccccCCCceEEeec-C
Confidence 34678889876 5666666665444899999999999988774321 11111111110 0113344444432 1
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
-...+....+.|+|+|.+++...
T Consensus 103 -------------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 -------------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp -------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred -------------CHHHHHHHHHHhccCCceEeccc
Confidence 13457888999999999987654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.25 E-value=0.12 Score=35.76 Aligned_cols=96 Identities=8% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEc-ccCCCC-----CCCCCcccEEEE
Q 028385 8 TRDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-----FFEDESFDAVID 79 (210)
Q Consensus 8 ~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~-d~~~~~-----~~~~~~fD~Vi~ 79 (210)
...||=+|||. |.++..+++. +..+|+++|.+++-++.|++.-.. .++.. |..... ....+.+|+|+.
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----ECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----EEECccccchHHHHHHHHhccccceEEEE
Confidence 34689999976 4555555555 666899999999999999987532 22221 111110 012456998886
Q ss_pred CCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 80 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
... ........+..+++.+|.++++-..
T Consensus 106 ~~g------------~~~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 106 VIG------------HLETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp CSC------------CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred eCC------------chHHHHHHHHHhhcCCeEEEEEEcc
Confidence 422 1222233334444666998876543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.00 E-value=0.39 Score=31.14 Aligned_cols=88 Identities=15% Similarity=0.002 Sum_probs=56.1
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECC
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~ 81 (210)
++|+=+|+ |.++..+++ .+. +|+.+|.+++.++.+++.. ++.++.+|..+.. ...-+..|.+++..
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh----hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 35666666 556555554 355 8999999999998877653 4678999998843 12345688888632
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 113 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~ 113 (210)
.- .....++....+.+.+.-.+
T Consensus 74 ~~----------d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 74 GK----------EEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp SC----------HHHHHHHHHHHHHTTCCCEE
T ss_pred Cc----------HHHHHHHHHHHHHcCCceEE
Confidence 11 22233445556667776443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.75 E-value=0.26 Score=33.51 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=57.3
Q ss_pred CCEEEeCCCC-chhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPS-IVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~~ 80 (210)
.+||=.|||. |.++..+++. +...|+++|.++.-.+.+++.-.. .++..+-.... ....+.+|+|+..
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~----~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc----EEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 4688888873 4444555554 767899999999999988875421 22222111110 0124569999974
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-. ....++....++++||.++++.
T Consensus 106 ~G-------------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 106 IG-------------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp SC-------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CC-------------CHHHHHHHHHhhcCCceeEEEE
Confidence 32 2345778888999998776553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.14 E-value=0.014 Score=40.98 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+||=-|++. |..+..+++....+|+++.-+++-.+.+++.-.+. -+.....+.+......++.+|+|+..-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~-vi~~~~~~~~~~~~~~~~gvD~vid~vg---- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE-VLAREDVMAERIRPLDKQRWAAAVDPVG---- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE-EEECC---------CCSCCEEEEEECST----
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce-eeecchhHHHHHHHhhccCcCEEEEcCC----
Confidence 4688888655 56667777764448999999988888887654221 0111111111111134668999997432
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
...+.+..++|++||+++.+-..
T Consensus 108 ----------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 108 ----------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp ----------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred ----------chhHHHHHHHhCCCceEEEeecc
Confidence 12377889999999999876543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.98 E-value=0.022 Score=40.02 Aligned_cols=101 Identities=11% Similarity=0.057 Sum_probs=58.4
Q ss_pred CCCCEEEeCCCC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEE--------EcccCCCC-CCC------
Q 028385 7 GTRDTCRRAAPS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL--------QMDVRDMS-FFE------ 70 (210)
Q Consensus 7 ~~~~vLdiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~--------~~d~~~~~-~~~------ 70 (210)
.+.+||=||+|. |..+...+..-..+|+.+|.++..+++.++.....-.+... .+.+..+. .+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 457899999997 56666666553349999999999999988765321111000 00111110 000
Q ss_pred ----CCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEE
Q 028385 71 ----DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 114 (210)
Q Consensus 71 ----~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~ 114 (210)
-..-|+|+....+- +. ..+.-+-+++.+.||||.+++
T Consensus 108 l~~~l~~aDlVI~talip----G~---~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIP----GK---PAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCT----TS---CCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecC----Cc---ccceeehHHHHHhcCCCcEEE
Confidence 12479998754432 11 222334567888999999873
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.95 E-value=0.026 Score=41.30 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=40.1
Q ss_pred EEEEcccCC-CCCCCCCcccEEEECCccchh---ccCCCchH----HHHHHHHHHHHhccCCcEEEEEE
Q 028385 57 KYLQMDVRD-MSFFEDESFDAVIDKGTLDSL---MCGTNAPI----SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 57 ~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~---~~~~~~~~----~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++++|..+ +..++++++|+|+......-- .....+.. -....++++.|+|||||.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 467888766 333778999999998664210 00111222 34567899999999999886554
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.82 E-value=0.22 Score=34.29 Aligned_cols=91 Identities=14% Similarity=0.019 Sum_probs=59.3
Q ss_pred CCCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEEC
Q 028385 8 TRDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVIDK 80 (210)
Q Consensus 8 ~~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~~ 80 (210)
..+||=.|++. |..+..+++....+|++++-+++-.+.+++.-. -.++..+-.+.. ....+.+|+|+..
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~ 105 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVNSLEEALKKASPDGYDCYFDN 105 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----hhhcccccccHHHHHHHHhhcCCCceeEEe
Confidence 34678777755 566666777644599999999988888776532 122322222210 1234569999973
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
-. .+.+++..++|+++|.++++
T Consensus 106 vG--------------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 106 VG--------------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp SC--------------HHHHHHHGGGEEEEEEEEEC
T ss_pred cC--------------chhhhhhhhhccCCCeEEee
Confidence 21 24678899999999999765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.74 E-value=0.044 Score=41.26 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=43.1
Q ss_pred CcEEEEcccCC-CCCCCCCcccEEEECCccchhc-c--CCCch----HHHHHHHHHHHHhccCCcEEEEEE
Q 028385 55 QLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM-C--GTNAP----ISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 55 ~v~~~~~d~~~-~~~~~~~~fD~Vi~~~~l~~~~-~--~~~~~----~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+-.++++|..+ +..++++++|+|+......-.. + +.... ....+.+.+++|+||++|.+++..
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 34788898876 3347899999999976642110 0 11111 335678999999999999987753
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.66 E-value=0.078 Score=39.06 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=38.4
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 52 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~ 52 (210)
..|||.=||+|..+....+.+. +.+|+|+++..++.|++|...
T Consensus 209 diVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 209 STVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred CEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 4699999999999988888776 899999999999999998853
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.57 E-value=0.074 Score=36.77 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEECC
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~~~ 81 (210)
.+||=.|+ |.|..+..+++.-..++++++.+++-.+.+++... -.++...-.++. ......||+|++.-
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga----~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV----EYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC----SEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CEEEEECCCCCcccccchhhccccccceeeecccccccccccccc----cccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 46777664 34667777777633488888888887787775431 122222212211 12356799999743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
. ...+++..++|+++|+++.+
T Consensus 103 g--------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 103 A--------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp C--------------THHHHHHHHTEEEEEEEEEC
T ss_pred c--------------chHHHHHHHHhcCCCEEEEE
Confidence 2 13466678999999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.61 Score=32.49 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=62.7
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC------------------------CCcEEEEccc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI------------------------PQLKYLQMDV 63 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------~~v~~~~~d~ 63 (210)
+|.=||+|+ ..++..++..|. +|+.+|.+++.++.++++..+. .++.+. .|.
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-~d~ 83 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-TDA 83 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-SCH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-chh
Confidence 677888876 344555566677 8999999999999887764210 011111 121
Q ss_pred CCCCCCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 64 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 64 ~~~~~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
.+ .-...|+|+-.-. + ..+-..++++++.+.++++..+...+-+-+.
T Consensus 84 ~~----a~~~ad~ViEav~-E-------~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i 130 (192)
T d1f0ya2 84 AS----VVHSTDLVVEAIV-E-------NLKVKNELFKRLDKFAAEHTIFASNTSSLQI 130 (192)
T ss_dssp HH----HTTSCSEEEECCC-S-------CHHHHHHHHHHHTTTSCTTCEEEECCSSSCH
T ss_pred Hh----hhcccceehhhcc-c-------chhHHHHHHHHHhhhcccCceeeccCccccc
Confidence 11 0124578875322 2 2377889999999999999888655544343
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.19 Score=34.43 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=59.0
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEECC
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVIDKG 81 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~~~ 81 (210)
-+||=.|+|+ |.....+++....+|++++.|+.-.+.+++.-.. +++..+-.++. .-..+.+|+|+...
T Consensus 30 ~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~----~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 30 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW----QVINYREEDLVERLKEITGGKKVRVVYDSV 105 (179)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS----EEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe----EEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence 4688886664 6677777776334899999999999988865321 22322212211 01356799998743
Q ss_pred ccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 82 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.- ..+....+.++++|.+++..
T Consensus 106 g~--------------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 106 GR--------------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp CG--------------GGHHHHHHTEEEEEEEEECC
T ss_pred cH--------------HHHHHHHHHHhcCCeeeecc
Confidence 31 23567888999999986643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.45 Score=34.76 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=51.7
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCC---------CCCCCcc
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS---------FFEDESF 74 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~---------~~~~~~f 74 (210)
.+|=.|++.|. .+..+++.|. +|+.+|.+++.++.+.+..+.. .++.++.+|+.+.. .-.-+..
T Consensus 12 v~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~i 90 (257)
T d1xg5a_ 12 LALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGV 90 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 47888888764 3445556677 8999999999888877665322 36778899998743 0012568
Q ss_pred cEEEECCccc
Q 028385 75 DAVIDKGTLD 84 (210)
Q Consensus 75 D~Vi~~~~l~ 84 (210)
|+++.+....
T Consensus 91 D~lVnnAg~~ 100 (257)
T d1xg5a_ 91 DICINNAGLA 100 (257)
T ss_dssp SEEEECCCCC
T ss_pred CEEEeccccc
Confidence 9999876543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.04 E-value=0.24 Score=34.33 Aligned_cols=90 Identities=9% Similarity=0.009 Sum_probs=55.7
Q ss_pred CEEEeCC--CCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEECCc
Q 028385 10 DTCRRAA--PSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDKGT 82 (210)
Q Consensus 10 ~vLdiGc--G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~~~~ 82 (210)
.||=.|+ |-|..+..+++. +...|++++.+++......+.... -.++...-.+.. ...++.+|+|+..-.
T Consensus 33 tVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 33 TMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF---DAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp EEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC---SEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc---eEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 4777763 568999999986 655688888777665554443321 122222211111 112356999986421
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
...++...++|+++|+++.+
T Consensus 110 --------------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 110 --------------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp --------------HHHHHHHHTTEEEEEEEEEC
T ss_pred --------------chhHHHHhhhccccccEEEe
Confidence 23578889999999999764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=1 Score=32.48 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=51.8
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~~ 80 (210)
.++|=.|++.| ..+..+++.|. +|+.+|.+++-++...+.. +++..++.|+.+.. .-.-++.|+++.+
T Consensus 8 K~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn 83 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLLVNN 83 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence 35777888776 44566666787 8999999998888776655 56788889988742 0122579999987
Q ss_pred Cccc
Q 028385 81 GTLD 84 (210)
Q Consensus 81 ~~l~ 84 (210)
....
T Consensus 84 Ag~~ 87 (244)
T d1pr9a_ 84 AAVA 87 (244)
T ss_dssp CCCC
T ss_pred cccc
Confidence 6554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.30 E-value=0.51 Score=30.43 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred CCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEE
Q 028385 17 PSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVID 79 (210)
Q Consensus 17 G~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~ 79 (210)
|.|.++..+++ .+. +|+.+|.+++.++.++.. ...++.+|+.+.. ...-...|.|+.
T Consensus 7 G~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi~ 70 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIV 70 (134)
T ss_dssp CCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhccCCccccEEEE
Confidence 44566665554 355 899999999998887543 2467788987754 111235787765
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.27 E-value=0.082 Score=36.38 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCCEEEeCC-CC-chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC--CCCCCcccEEEECCcc
Q 028385 8 TRDTCRRAA-PS-IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTL 83 (210)
Q Consensus 8 ~~~vLdiGc-G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~fD~Vi~~~~l 83 (210)
..+||=.|+ |. |.....+++....+|++++.+++-.+.+++.-.+ .++ |..+.. .-..+.+|+|+....
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~----~~i--~~~~~~~~~~~~~g~D~v~d~~G- 100 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE----EAA--TYAEVPERAKAWGGLDLVLEVRG- 100 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS----EEE--EGGGHHHHHHHTTSEEEEEECSC-
T ss_pred CCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc----eee--ehhhhhhhhhccccccccccccc-
Confidence 346787775 32 5666667776344899999998888877764321 111 222211 012346999986311
Q ss_pred chhccCCCchHHHHHHHHHHHHhccCCcEEEEE
Q 028385 84 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
+ .+.+..++|+|+|+++.+
T Consensus 101 ----------~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 101 ----------K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp ----------T----THHHHHTTEEEEEEEEEC
T ss_pred ----------h----hHHHHHHHHhcCCcEEEE
Confidence 1 246678899999999764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.77 Score=33.64 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=70.3
Q ss_pred CCE-EEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCCC---------CCCCcc
Q 028385 9 RDT-CRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 9 ~~v-LdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
.|| |==|++.|. .+..|++.+...|+.++.+++-++.+.+..+. ..++.++.+|+.+... -.-+..
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i 82 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 82 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 466 444665553 23445555444899999999988888776643 3678999999988530 012579
Q ss_pred cEEEECCccchhc-cCCCchHH-----------HHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLM-CGTNAPIS-----------ASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~-~~~~~~~~-----------~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|++|.+..+.... .......+ ...+.+.+...|+++|+++.++
T Consensus 83 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 83 DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp EEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred EEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9999987654321 11112222 3356777888889999987765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.02 E-value=0.64 Score=31.54 Aligned_cols=93 Identities=10% Similarity=0.024 Sum_probs=54.8
Q ss_pred CCEEEeCCCCch-hHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEE-cccCCCC-----CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIV-MSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMS-----FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~-~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~-~d~~~~~-----~~~~~~fD~Vi~~ 80 (210)
..||=+|+|.+. ....+++ .+...|+++|.++.-.+.+++.-.. .++. .+..+.. ....+.+|+|+..
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----ECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe----eEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 468999997533 3333333 3667999999999999988876421 2221 1111110 1234579999975
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEEEc
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 118 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~~~ 118 (210)
... ...++.....++++ |.+++...
T Consensus 106 ~G~-------------~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 106 IGR-------------LDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp SCC-------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred CCc-------------hhHHHHHHHHHhcCCcceEEecC
Confidence 433 23356666777776 55555443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.98 E-value=0.95 Score=32.93 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=53.4
Q ss_pred CCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC----------CCCCCcc
Q 028385 9 RDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----------FFEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~----------~~~~~~f 74 (210)
..+|=.|+..| ..+..+++.|. +|+.++.++.-++.+.+..... .++.++.+|+.+.. ...++..
T Consensus 7 K~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~i 85 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKL 85 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCCc
Confidence 35788888766 34556666787 8999999998888777666433 56788899998743 1123578
Q ss_pred cEEEECCccch
Q 028385 75 DAVIDKGTLDS 85 (210)
Q Consensus 75 D~Vi~~~~l~~ 85 (210)
|+++.+.....
T Consensus 86 dilinnag~~~ 96 (258)
T d1ae1a_ 86 NILVNNAGVVI 96 (258)
T ss_dssp CEEEECCCCCC
T ss_pred EEEeccccccc
Confidence 99988765543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.87 E-value=0.84 Score=33.36 Aligned_cols=75 Identities=11% Similarity=0.060 Sum_probs=53.5
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcccE
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~fD~ 76 (210)
..+|=.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.......+.++.+|+.+... -.-+..|+
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 85 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDI 85 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcce
Confidence 456777877763 3344556676 8999999999998888877665678889999887430 01257899
Q ss_pred EEECCccc
Q 028385 77 VIDKGTLD 84 (210)
Q Consensus 77 Vi~~~~l~ 84 (210)
++.+....
T Consensus 86 lVnnAG~~ 93 (268)
T d2bgka1 86 MFGNVGVL 93 (268)
T ss_dssp EEECCCCC
T ss_pred eccccccc
Confidence 99876543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.85 E-value=0.83 Score=30.87 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCEEEeCCCCc--hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCcE------EEEcccCCCCCCCCCcccEE
Q 028385 9 RDTCRRAAPSI--VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLK------YLQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 9 ~~vLdiGcG~G--~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~v~------~~~~d~~~~~~~~~~~fD~V 77 (210)
.+|.=||+|.- .++..|++.|. +|+.+|.++.-++..++.... .+... ....|..+ .-...|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL----AVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH----HHTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh----HhcCCCEE
Confidence 35777888762 44455556676 999999999888877765310 11111 11111111 01357888
Q ss_pred EECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEE
Q 028385 78 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 115 (210)
Q Consensus 78 i~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~ 115 (210)
+..- +......+++++...|+++-.+++
T Consensus 77 ii~v----------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIVV----------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EECS----------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEE----------chhHHHHHHHHhhhccCCCCEEEE
Confidence 8632 224568899999999999886643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.64 E-value=1.1 Score=31.30 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 028385 9 RDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMK 49 (210)
Q Consensus 9 ~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~ 49 (210)
++|.=+|+|. | .++..+++.|. +|+|+|.++.-++...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g 42 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQG 42 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhccc
Confidence 4577788886 3 34455566677 899999999988876543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=89.03 E-value=0.29 Score=33.84 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCEEEeCC--CCchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-CCCCCcccEEEECCccch
Q 028385 9 RDTCRRAA--PSIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 9 ~~vLdiGc--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~Vi~~~~l~~ 85 (210)
..||=.|+ |-|..+..+++.-..+|+++.-+++-.+.+++.-.+ .++.-+-.+.. .+....+|.|++.
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad----~vi~~~~~~~~~~l~~~~~~~vvD~----- 103 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS----RVLPRDEFAESRPLEKQVWAGAIDT----- 103 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE----EEEEGGGSSSCCSSCCCCEEEEEES-----
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc----cccccccHHHHHHHHhhcCCeeEEE-----
Confidence 35776654 246677777776444899999999888877765321 22322222211 2455678988752
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+ . ...+.+..+.|+++|+++.+-
T Consensus 104 V-------g--g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 104 V-------G--DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp S-------C--HHHHHHHHHTEEEEEEEEECC
T ss_pred c-------c--hHHHHHHHHHhccccceEeec
Confidence 2 1 235788899999999997764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.65 E-value=2.4 Score=28.96 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=62.8
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C-----------CCcEEEEcccCCCCC
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I-----------PQLKYLQMDVRDMSF 68 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~-----------~~v~~~~~d~~~~~~ 68 (210)
+|.=||+|+ ..++..++..|. +|+..|.+++.++.+.++... . .++.. ..+...
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--- 80 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLSYGD--- 80 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESSSTT---
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-cccccc---
Confidence 577788865 233445556677 899999999999888765421 0 01111 122221
Q ss_pred CCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchh
Q 028385 69 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 123 (210)
Q Consensus 69 ~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~ 123 (210)
-..-|+|+- .+.+-+ +-.+++++++.++++++-++...+-+-+..
T Consensus 81 --~~~adlViE-av~E~l-------~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~ 125 (186)
T d1wdka3 81 --FGNVDLVVE-AVVENP-------KVKQAVLAEVENHVREDAILASNTSTISIS 125 (186)
T ss_dssp --GGGCSEEEE-CCCSCH-------HHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred --ccccceeee-eecchH-------HHHHHHHHHHHhhcCCCeeEEeccccccHH
Confidence 134688885 233333 788899999999999998886655444443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.04 E-value=1.5 Score=29.49 Aligned_cols=91 Identities=9% Similarity=0.103 Sum_probs=53.1
Q ss_pred CCEEEeCCCCchhH-HHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC------CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIVMS-EDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~~~-~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~fD~Vi~~ 80 (210)
.+||=+|+|.+.++ ..+++ .+...|+++|.+++-++.+++.-.. +++..+-.+.. ....+.+|+|+..
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd----~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT----DFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC----EEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc----EEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 46888999885444 33333 3666899999999999988875321 23322211111 0123468999874
Q ss_pred CccchhccCCCchHHHHHHHHHHHHhccCC-cEEEEE
Q 028385 81 GTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLI 116 (210)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~i~r~Lkpg-G~~~~~ 116 (210)
-.- ...+....+.+++| |.+++.
T Consensus 106 ~G~-------------~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 106 VGN-------------VGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp SCC-------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred cCC-------------HHHHHHHHHHhhCCCcceeEE
Confidence 332 33456666666666 444433
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.60 E-value=1.5 Score=27.92 Aligned_cols=86 Identities=8% Similarity=-0.095 Sum_probs=56.1
Q ss_pred CCCchhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCccchhccCCC
Q 028385 16 APSIVMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGTLDSLMCGTN 91 (210)
Q Consensus 16 cG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~l~~~~~~~~ 91 (210)
||.|..+..+++. ....++.+|.++...+..+. .++.++.+|..+.. ...-+..+.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~--------- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVNLE--------- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS---------
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----cCccccccccCCHHHHHHhhhhcCcEEEEecc---------
Confidence 5778888888885 22368999999998887754 35789999988742 123345777775321
Q ss_pred chHHHHHHHHHHHHhccCCcEEEEE
Q 028385 92 APISASQMLGEVSRLLKPGGIYMLI 116 (210)
Q Consensus 92 ~~~~~~~~l~~i~r~LkpgG~~~~~ 116 (210)
.......+....|.+.|...++..
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 72 -SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp -SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred -chhhhHHHHHHHHHHCCCceEEEE
Confidence 122333344456667888776444
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.19 E-value=1.5 Score=29.75 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=59.1
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
.+|-=||+|. +.++..|++.++ +|++.|.+++.++...+......... -.....+.. ..-...|.++..-.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~-~a~~~~~~~-~~~~~~~~ii~~~~---- 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVL-GAHSLEEMV-SKLKKPRRIILLVK---- 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCE-ECSSHHHHH-HHBCSSCEEEECSC----
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcccccccc-chhhhhhhh-hhhcccceEEEecC----
Confidence 4566677765 355555666677 89999999998887766542211111 111111111 01123466654321
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCchhh
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 124 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~~~ 124 (210)
+.+.....+..+...+++|-.++-.+...|...
T Consensus 76 -----~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~ 108 (176)
T d2pgda2 76 -----AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDT 108 (176)
T ss_dssp -----TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHH
T ss_pred -----chHHHHHHHHHHHhccccCcEEEecCcchhHHH
Confidence 115666778888999999887765554455543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.77 E-value=3.5 Score=31.05 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCEEEeCCCCchhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhc-----------------------CCCCcEEEEcccC
Q 028385 9 RDTCRRAAPSIVMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYE-----------------------EIPQLKYLQMDVR 64 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~-----------------------~~~~v~~~~~d~~ 64 (210)
..|+-+|||.-.....+..... .+..+|++ |++++.=++... ..++.+.+.+|+.
T Consensus 98 ~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~ 176 (328)
T d1rjda_ 98 VQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN 176 (328)
T ss_dssp EEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred cEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCC
Confidence 4699999999888877765422 44444444 333332222210 1146788888988
Q ss_pred CCC--------CCCCCcccEEEECCccchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcC
Q 028385 65 DMS--------FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 119 (210)
Q Consensus 65 ~~~--------~~~~~~fD~Vi~~~~l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~ 119 (210)
+.. .+..+.--++++-.++.++ +.+...++++.+.+... +|.+++.+..
T Consensus 177 d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-----~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 177 DITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp CHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CcHhhHHHHHccCCCCCCeEEEEeeehhcC-----CHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 753 2333344578888888888 77889999999988875 5666666644
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.68 E-value=3.1 Score=29.67 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC-----CCCCCcccEEEEC
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-----FFEDESFDAVIDK 80 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~-----~~~~~~fD~Vi~~ 80 (210)
..+|=-|++.|. .+..+++.|. +|+.+|.+++-++...+.. +++..+++|+.+.. .-.-+..|+++.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn 81 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLVNN 81 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence 356777877763 4455566677 8999999988777666555 56788899988743 0112579999987
Q ss_pred Ccc
Q 028385 81 GTL 83 (210)
Q Consensus 81 ~~l 83 (210)
...
T Consensus 82 Ag~ 84 (242)
T d1cyda_ 82 AAL 84 (242)
T ss_dssp CCC
T ss_pred Ccc
Confidence 554
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=85.93 E-value=0.37 Score=35.93 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCEEEeCCCCchhHHHHH----HcCCCcEEEEe-CCHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccEEEE
Q 028385 9 RDTCRRAAPSIVMSEDMV----KDGYEDIVNID-ISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVID 79 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~----~~~~~~v~~vD-~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~Vi~ 79 (210)
++||=.| |+|.++..+. +++. +|+++| ++...-..........++++++.+|+.+.. .+....+|+|+-
T Consensus 1 ~KILVTG-atGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 1 AKLLITG-GCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 3677555 5777775554 4566 899998 332211111122223378999999998743 122345799987
Q ss_pred CCccc
Q 028385 80 KGTLD 84 (210)
Q Consensus 80 ~~~l~ 84 (210)
.....
T Consensus 79 ~aa~~ 83 (338)
T d1orra_ 79 LAGQV 83 (338)
T ss_dssp CCCCC
T ss_pred ecccc
Confidence 65543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=85.92 E-value=1.2 Score=29.64 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=56.3
Q ss_pred CEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchhc
Q 028385 10 DTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 87 (210)
Q Consensus 10 ~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~~ 87 (210)
+|-=||+|. ..++..|++.++ +|++.|.++...+..++.. .. ...+..+. -...|+|+..-.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~-----~~-~~~~~~e~----~~~~d~ii~~v~----- 65 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAG-----AE-TASTAKAI----AEQCDVIITMLP----- 65 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT-----CE-ECSSHHHH----HHHCSEEEECCS-----
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhh-----hh-hcccHHHH----HhCCCeEEEEcC-----
Confidence 455677765 345555666677 8999999999888877643 11 11222221 124688876321
Q ss_pred cCCCchHHHHHHH---HHHHHhccCCcEEEEEEcCCchhhH
Q 028385 88 CGTNAPISASQML---GEVSRLLKPGGIYMLITYGDPKARM 125 (210)
Q Consensus 88 ~~~~~~~~~~~~l---~~i~r~LkpgG~~~~~~~~~p~~~~ 125 (210)
+......++ ..+...+++|..++-.+...|....
T Consensus 66 ----~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~ 102 (161)
T d1vpda2 66 ----NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASR 102 (161)
T ss_dssp ----SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHH
T ss_pred ----CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHH
Confidence 123444444 4577778888777555555555433
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.89 E-value=0.087 Score=36.27 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=58.3
Q ss_pred CEEEeCCC--CchhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCC--CCCCCCCcccEEEECCccch
Q 028385 10 DTCRRAAP--SIVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLDS 85 (210)
Q Consensus 10 ~vLdiGcG--~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~Vi~~~~l~~ 85 (210)
.||=-|++ -|..+..+++.-..+|+++.-+++-.+.+++.-.. .+ +...|... ......+.+|+|+..-.
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad--~v-i~~~~~~~~~~~~~~~~gvd~vid~vg--- 99 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS--EV-ISREDVYDGTLKALSKQQWQGAVDPVG--- 99 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS--EE-EEHHHHCSSCCCSSCCCCEEEEEESCC---
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc--ce-EeccchhchhhhcccCCCceEEEecCc---
Confidence 57777753 36777777777334899999998877777765432 11 11112111 11134567999987421
Q ss_pred hccCCCchHHHHHHHHHHHHhccCCcEEEEEEc
Q 028385 86 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 118 (210)
Q Consensus 86 ~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~ 118 (210)
...+.+..+.|+++|+++++-.
T Consensus 100 -----------g~~~~~~~~~l~~~G~iv~~G~ 121 (167)
T d1tt7a2 100 -----------GKQLASLLSKIQYGGSVAVSGL 121 (167)
T ss_dssp -----------THHHHHHHTTEEEEEEEEECCC
T ss_pred -----------HHHHHHHHHHhccCceEEEeec
Confidence 2357788999999999977543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=85.88 E-value=0.73 Score=34.62 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=44.5
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeC----CHHHHHHHHHhhcCCCCcEEEEcccCCCC----CCCCCcccE
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDI----SSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDA 76 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~----s~~~~~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~fD~ 76 (210)
|+||=.| |+|.++..+++ .+. +|+++|. ....+....... .+++.++++|+.+.. .+.+..+|+
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 76 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDT 76 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhc--CCCCEEEEeecCCHHHHHHHHhccCCCE
Confidence 4677776 57777766654 466 8999985 223333222221 157999999998854 133456899
Q ss_pred EEECCcc
Q 028385 77 VIDKGTL 83 (210)
Q Consensus 77 Vi~~~~l 83 (210)
|+-....
T Consensus 77 ViHlAa~ 83 (338)
T d1udca_ 77 VIHFAGL 83 (338)
T ss_dssp EEECCSC
T ss_pred EEECCCc
Confidence 9865543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.50 E-value=1.1 Score=27.46 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCCCCCCCCEEEeCC-CCc--hhHHHHHHcCCCcEEEEeCCH-HHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEE
Q 028385 2 ATPSTGTRDTCRRAA-PSI--VMSEDMVKDGYEDIVNIDISS-VAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 77 (210)
Q Consensus 2 ~~~~~~~~~vLdiGc-G~G--~~~~~l~~~~~~~v~~vD~s~-~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~V 77 (210)
.-+.....+|.=||. |+| .++..+.+.|+ +|+|.|... ...+..++ ..+.+..+..... . ...|+|
T Consensus 2 ~~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~-----~Gi~v~~g~~~~~--i--~~~d~v 71 (96)
T d1p3da1 2 IPEMRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQ-----AGAKIYIGHAEEH--I--EGASVV 71 (96)
T ss_dssp CCCCTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHH-----TTCEEEESCCGGG--G--TTCSEE
T ss_pred CccchhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHH-----CCCeEEECCcccc--C--CCCCEE
Confidence 344555567777775 445 44566666788 999999863 33333322 2345554443321 1 346888
Q ss_pred EECCcc
Q 028385 78 IDKGTL 83 (210)
Q Consensus 78 i~~~~l 83 (210)
+.+..+
T Consensus 72 V~S~AI 77 (96)
T d1p3da1 72 VVSSAI 77 (96)
T ss_dssp EECTTS
T ss_pred EECCCc
Confidence 876554
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.52 E-value=1.1 Score=32.45 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=49.9
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCcEEEEcccCCCCC---------CCCCcc
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
.+|=-|++.|. .+..+++.|. +|+.+|.+++.++.+.+..... .++.++.+|+.+... -.-+..
T Consensus 5 valITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 83 (254)
T d2gdza1 5 VALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRL 83 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 34566776653 3344455676 8999999999888777766432 467889999988430 012579
Q ss_pred cEEEECCccc
Q 028385 75 DAVIDKGTLD 84 (210)
Q Consensus 75 D~Vi~~~~l~ 84 (210)
|+++.+....
T Consensus 84 DilVnnAg~~ 93 (254)
T d2gdza1 84 DILVNNAGVN 93 (254)
T ss_dssp CEEEECCCCC
T ss_pred Ceeccccccc
Confidence 9999876553
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=84.34 E-value=2.6 Score=27.64 Aligned_cols=85 Identities=13% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCEEEeCCCC-c-hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS-I-VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~-G-~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
++|.=||||+ | .+...+.+.+..+++..|.+++.++...++. .+... .|.... ...|+|+.. +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----~~~~~-~~~~~v-----~~~Div~la-----v 65 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----GVETS-ATLPEL-----HSDDVLILA-----V 65 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----CCEEE-SSCCCC-----CTTSEEEEC-----S
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----ccccc-cccccc-----cccceEEEe-----c
Confidence 4577788865 2 2333344556458999999998888776654 23322 222222 236988842 2
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
.+ +.+.++.+-+++.+.+++..
T Consensus 66 -----kP----~~~~~v~~~l~~~~~~viS~ 87 (152)
T d1yqga2 66 -----KP----QDMEAACKNIRTNGALVLSV 87 (152)
T ss_dssp -----CH----HHHHHHHTTCCCTTCEEEEC
T ss_pred -----CH----HHHHHhHHHHhhcccEEeec
Confidence 11 23444555566666665543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.33 E-value=0.18 Score=33.93 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=52.5
Q ss_pred CCEEEeCCCC--chhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCCCCCCcccEEEECCccchh
Q 028385 9 RDTCRRAAPS--IVMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 86 (210)
Q Consensus 9 ~~vLdiGcG~--G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~Vi~~~~l~~~ 86 (210)
++|+=+|+|. +.++..|++.+. +|+.++.++.-.+.... .......+...-..+.+ -....+|+|+..--
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~D~iii~vk---- 72 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL--VETDGSIFNESLTANDP-DFLATSDLLLVTLK---- 72 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE--ECTTSCEEEEEEEESCH-HHHHTCSEEEECSC----
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc--ccCCccccccccccchh-hhhcccceEEEeec----
Confidence 5788999986 344555556666 89999987631110000 00000000000001111 12246899886322
Q ss_pred ccCCCchHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 87 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 87 ~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
-.+...+++.+...+.++..++...
T Consensus 73 ------a~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 73 ------AWQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp ------GGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred ------ccchHHHHHhhccccCcccEEeecc
Confidence 1456788999999999998876654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.78 E-value=1.9 Score=30.91 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=52.8
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCcEEEEcccCCCC---------CCCCCcccE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMS---------FFEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~v~~~~~d~~~~~---------~~~~~~fD~ 76 (210)
.+|=-|++.| .++..+++.|. +|+.+|.+++-++...+.... ..++.++.+|+.+.. .-..+..|+
T Consensus 9 v~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~idi 87 (244)
T d1yb1a_ 9 IVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSI 87 (244)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCce
Confidence 3555577776 34455566677 899999999988877776643 267889999998853 012456999
Q ss_pred EEECCccch
Q 028385 77 VIDKGTLDS 85 (210)
Q Consensus 77 Vi~~~~l~~ 85 (210)
++.+.....
T Consensus 88 linnag~~~ 96 (244)
T d1yb1a_ 88 LVNNAGVVY 96 (244)
T ss_dssp EEECCCCCC
T ss_pred eEeeccccc
Confidence 998776544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.75 E-value=2.9 Score=30.23 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=65.6
Q ss_pred CCEEEeCCCCch---hHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhc-CCCCcEEEEcccCCCCC---------CCCCcc
Q 028385 9 RDTCRRAAPSIV---MSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYE-EIPQLKYLQMDVRDMSF---------FEDESF 74 (210)
Q Consensus 9 ~~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s-~~~~~~a~~~~~-~~~~v~~~~~d~~~~~~---------~~~~~f 74 (210)
..+|=-|++.|. ++..+++.|. +|+.+|.+ ++.++...+... ...++.+..+|+.+... -.-+..
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 97 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKL 97 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 356777776663 4556666677 89999876 555555554443 23578889999887420 012568
Q ss_pred cEEEECCccchhc-cCCCchH-----------HHHHHHHHHHHhccCCcEEEEEE
Q 028385 75 DAVIDKGTLDSLM-CGTNAPI-----------SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 75 D~Vi~~~~l~~~~-~~~~~~~-----------~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
|+++.+....... ..+.... ....+.+.+.+.|+.+|..+++.
T Consensus 98 dilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 98 DIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 9998876543221 1111222 23345777888888888776654
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=83.21 E-value=2.1 Score=30.75 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=51.5
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCCC---------CCCCcccEE
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFDAV 77 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~fD~V 77 (210)
.+|=-|++.| ..+..+++.|. +|+.+|.+++.++.+.+......++.++.+|+.+... -.-+..|++
T Consensus 8 ~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 86 (251)
T d1zk4a1 8 VAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTL 86 (251)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCceEE
Confidence 3555666555 23445556677 8999999999988888777555678899999987430 012578999
Q ss_pred EECCccc
Q 028385 78 IDKGTLD 84 (210)
Q Consensus 78 i~~~~l~ 84 (210)
+.+....
T Consensus 87 VnnAg~~ 93 (251)
T d1zk4a1 87 VNNAGIA 93 (251)
T ss_dssp EECCCCC
T ss_pred Eeccccc
Confidence 9876553
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=82.73 E-value=2.4 Score=30.62 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=66.6
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC---------CCCCCcccE
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS---------FFEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~---------~~~~~~fD~ 76 (210)
.+|=-|++.|. .+..|++.|. +|+.+|.+++.++.+.+..+.. .++.++.+|+.+.. .-.-+..|+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 85 (260)
T d1zema1 7 VCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDF 85 (260)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCe
Confidence 46667777663 4556666777 8999999999998888776543 56888999988742 001257999
Q ss_pred EEECCccchh--ccCCCchHHH-----------HHHHHHHHHhc--cCCcEEEEEE
Q 028385 77 VIDKGTLDSL--MCGTNAPISA-----------SQMLGEVSRLL--KPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~--~~~~~~~~~~-----------~~~l~~i~r~L--kpgG~~~~~~ 117 (210)
++.+...... .+.+.+.+++ ..+.+.+.+.+ +.+|.++.++
T Consensus 86 lVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~is 141 (260)
T d1zema1 86 LFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTA 141 (260)
T ss_dssp EEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeee
Confidence 9987543221 1222222222 23344455544 5678877664
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.53 E-value=2 Score=31.31 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=52.0
Q ss_pred CCCEEEeCCCCc---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCcEEEEcccCCCCC---------CCC
Q 028385 8 TRDTCRRAAPSI---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSF---------FED 71 (210)
Q Consensus 8 ~~~vLdiGcG~G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~---------~~~ 71 (210)
...+|=.|++.| ..+..+++.|. +|+.+|.+++.++.+.+...+. .++.++.+|+.+... -.-
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 345677777666 34455566677 8999999999988887776432 368899999987430 012
Q ss_pred CcccEEEECCcc
Q 028385 72 ESFDAVIDKGTL 83 (210)
Q Consensus 72 ~~fD~Vi~~~~l 83 (210)
+..|+++.+...
T Consensus 84 g~iDilvnnAG~ 95 (272)
T d1xkqa_ 84 GKIDVLVNNAGA 95 (272)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceEEEeCCcc
Confidence 568999987543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=82.04 E-value=1.3 Score=29.07 Aligned_cols=98 Identities=9% Similarity=-0.035 Sum_probs=54.0
Q ss_pred CEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---CCCCCcccEEEECCc
Q 028385 10 DTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FFEDESFDAVIDKGT 82 (210)
Q Consensus 10 ~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---~~~~~~fD~Vi~~~~ 82 (210)
+|+=+|+ |..+..+++ .+. +++.+|.+++......+.... .++.++.+|..+.. ...-+..|.|++...
T Consensus 5 HiII~G~--g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~-~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~ 80 (153)
T d1id1a_ 5 HFIVCGH--SILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG-DNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC-TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred EEEEECC--CHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhc-CCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence 4666665 555555544 355 899999998654333222211 46889999988843 122346788875321
Q ss_pred cchhccCCCchHHHHHHHHHHHHhccCCcEEEEEEcCCch
Q 028385 83 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 122 (210)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~i~r~LkpgG~~~~~~~~~p~ 122 (210)
= ......+....|-+.|.-.++.. ...+.
T Consensus 81 ~----------d~~n~~~~~~~r~~~~~~~iia~-~~~~~ 109 (153)
T d1id1a_ 81 N----------DADNAFVVLSAKDMSSDVKTVLA-VSDSK 109 (153)
T ss_dssp C----------HHHHHHHHHHHHHHTSSSCEEEE-CSSGG
T ss_pred c----------HHHHHHHHHHHHHhCCCCceEEE-EcCHH
Confidence 1 22223333445556677666443 34433
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.73 E-value=1.3 Score=32.07 Aligned_cols=107 Identities=14% Similarity=0.074 Sum_probs=66.5
Q ss_pred CEEEeCCCCc---hhHHHHHHcCCCcEEE-EeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC---------CCCCCccc
Q 028385 10 DTCRRAAPSI---VMSEDMVKDGYEDIVN-IDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS---------FFEDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~G---~~~~~l~~~~~~~v~~-vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~---------~~~~~~fD 75 (210)
.+|=.|++.| ..+..|++.|. +|+. .+.++..++.+.+...+. .++.++.+|+.+.. ...-+..|
T Consensus 8 ~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 86 (259)
T d1ja9a_ 8 VALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLD 86 (259)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCCCc
Confidence 5677776665 55566667777 5665 467777777776666433 57889999998742 01235699
Q ss_pred EEEECCccchhc-cCCCchH-----------HHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLM-CGTNAPI-----------SASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~-~~~~~~~-----------~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++.+....+.. +...+.+ ....+.+.+...|+.+|..+++.
T Consensus 87 ilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 87 FVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 999876654321 1111222 23455777778888887766653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.36 E-value=4.2 Score=29.06 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=63.9
Q ss_pred EEEeCCCCchhHHHHH----HcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCC---------CCCCCcccE
Q 028385 11 TCRRAAPSIVMSEDMV----KDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS---------FFEDESFDA 76 (210)
Q Consensus 11 vLdiGcG~G~~~~~l~----~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~---------~~~~~~fD~ 76 (210)
+|=.|++.| ++..++ +.|. +|+.+|.+++.++.+.+..+.. .++.++.+|+.+.. .-.-+..|+
T Consensus 13 alITGas~G-IG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi 90 (251)
T d2c07a1 13 ALVTGAGRG-IGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDI 90 (251)
T ss_dssp EEEESTTSH-HHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCCE
T ss_pred EEEeCCCCH-HHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCcee
Confidence 455576655 444444 4466 8999999999988887776544 57889999998742 011357999
Q ss_pred EEECCccchhc-cCCCchHHHH-----------HHHHHHHHhc--cCCcEEEEEE
Q 028385 77 VIDKGTLDSLM-CGTNAPISAS-----------QMLGEVSRLL--KPGGIYMLIT 117 (210)
Q Consensus 77 Vi~~~~l~~~~-~~~~~~~~~~-----------~~l~~i~r~L--kpgG~~~~~~ 117 (210)
++.+....... +.+.+.+++. .+.+.+.+.| +.+|.++.++
T Consensus 91 lvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 145 (251)
T d2c07a1 91 LVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINIS 145 (251)
T ss_dssp EEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred eeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEEC
Confidence 99876543321 2222223222 2334444444 4568877765
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=80.91 E-value=1.6 Score=33.96 Aligned_cols=45 Identities=7% Similarity=0.082 Sum_probs=36.2
Q ss_pred CCCCCEEEeCCCCchhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhh
Q 028385 6 TGTRDTCRRAAPSIVMSEDMVKD---GYEDIVNIDISSVAIDMMKMKY 50 (210)
Q Consensus 6 ~~~~~vLdiGcG~G~~~~~l~~~---~~~~v~~vD~s~~~~~~a~~~~ 50 (210)
.....++|+|+-.|..+..+++. ...+|+++|.++...+..+++.
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi 258 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL 258 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 34457899999999988777653 3458999999999999998775
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| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.89 E-value=1.5 Score=33.52 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCEEEeCCCCchhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhc------------------CCCCcEEEEcccCCC
Q 028385 9 RDTCRRAAPSIVMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYE------------------EIPQLKYLQMDVRDM 66 (210)
Q Consensus 9 ~~vLdiGcG~G~~~~~l~~----~~~~~v~~vD~s~~~~~~a~~~~~------------------~~~~v~~~~~d~~~~ 66 (210)
++||=.|. +|.++..+++ .|+ +|+++|.-..-......... ...+++|+.+|+.+.
T Consensus 2 ~kILVTGa-tGfiG~~lv~~Ll~~g~-~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 2 SRVMVIGG-DGYCGWATALHLSKKNY-EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTC-EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCcC-EEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 56777775 7777766554 476 89999943222111111110 115789999999875
Q ss_pred C----CCCCCcccEEEECCcc
Q 028385 67 S----FFEDESFDAVIDKGTL 83 (210)
Q Consensus 67 ~----~~~~~~fD~Vi~~~~l 83 (210)
. .+.+..+|+|+-....
T Consensus 80 ~~l~~~~~~~~~d~ViHlAa~ 100 (393)
T d1i24a_ 80 EFLAESFKSFEPDSVVHFGEQ 100 (393)
T ss_dssp HHHHHHHHHHCCSEEEECCSC
T ss_pred HHHHHHHHhhcchheeccccc
Confidence 3 1233467999865543
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| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.30 E-value=3.2 Score=29.83 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=48.4
Q ss_pred CEEEeCCCCch---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCcEEEEcccCCCCC---------CCCCcccE
Q 028385 10 DTCRRAAPSIV---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF---------FEDESFDA 76 (210)
Q Consensus 10 ~vLdiGcG~G~---~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~---------~~~~~fD~ 76 (210)
.+|=-|++.|. .+..+++.|. +|+.+|.+++.++.+.+..++. .++.++.+|+.+... -.-+..|+
T Consensus 13 ~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iDi 91 (255)
T d1fmca_ 13 CAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDI 91 (255)
T ss_dssp EEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 34555555442 2233444566 8999999999888877766433 578889999987420 01257999
Q ss_pred EEECCccc
Q 028385 77 VIDKGTLD 84 (210)
Q Consensus 77 Vi~~~~l~ 84 (210)
++.+....
T Consensus 92 lvnnAG~~ 99 (255)
T d1fmca_ 92 LVNNAGGG 99 (255)
T ss_dssp EEECCCCC
T ss_pred eeeCCcCC
Confidence 99876543
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| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=80.03 E-value=3.1 Score=29.58 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=63.0
Q ss_pred CEEEeCCCC--c---hhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCcEEEEcccCCCC---------CCCCCccc
Q 028385 10 DTCRRAAPS--I---VMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---------FFEDESFD 75 (210)
Q Consensus 10 ~vLdiGcG~--G---~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~---------~~~~~~fD 75 (210)
.+|=-|+++ | ..+..+++.|. +|+..+.++...+.+.+......+..+...|..+.. ....+..|
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFD 85 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSSEE
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccccc
Confidence 566677654 5 36677778887 799999998777776665544345566666665521 12346788
Q ss_pred EEEECCccchhccC-C-----Cc-----------hHHHHHHHHHHHHhccCCcEEEEEE
Q 028385 76 AVIDKGTLDSLMCG-T-----NA-----------PISASQMLGEVSRLLKPGGIYMLIT 117 (210)
Q Consensus 76 ~Vi~~~~l~~~~~~-~-----~~-----------~~~~~~~l~~i~r~LkpgG~~~~~~ 117 (210)
+++.+......... . .. ......+.+.+...+++|+.+++++
T Consensus 86 ~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~is 144 (258)
T d1qsga_ 86 GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 144 (258)
T ss_dssp EEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred eEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence 88876543211100 0 00 1123344556666778888776665
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