Citrus Sinensis ID: 028388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccccHHHcc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccHHccEEEEEEEcccccHHHHHHHHHHHHccEEEEHHHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHccccccccEEEEEEccHHHHHHHHHcHHHccccccHHHHHHHHHHHHHccHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgtvvetpvkeadatvtvkkpTVVFvlggpgsgkgtqcaNIVEHfgythlsaGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEsgndkflidgfprneenRAAFEAVTKIEPEFVLFFDCSEEEMERRILNrnqgreddnvETIRKRFKVFLESSLPVVQYYEAKgkvrkidaakpVAEVFDAVKavftpkdekaaa
Flexible Loop (DISEMBL)
mgtvvetpvkeadatvtvkkptvvFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQnmikegkivpSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIlnrnqgreddnveTIRKRFKvflesslpvVQYYEAKGKVRKIDAAKPVAEVFDavkavftpkdekaaa
Low Complexity Region (SEG)
MGTVVETPVKEADAtvtvkkptvvfvLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA
Disordered region (IsUnstruct)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK******TMIQNMIKEGKIVPSEVTIKLLQK*******DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE******************VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF*********
Disordered Region (DISOPRED)
*********************TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK*****GTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD*****
Disordered Region (DISEMBL)
**********EADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA
Disordered Region (DISPRO)
*************ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKAAA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O04905	202	UMP/CMP kinase OS=Arabido	yes	no	0.937	0.970	0.836	2e-94
O24464	231	Adenylate kinase OS=Prunu	N/A	no	0.952	0.861	0.59	3e-65
Q5ZKE7	196	UMP-CMP kinase OS=Gallus	yes	no	0.866	0.923	0.549	1e-51
Q7ZX23	193	UMP-CMP kinase OS=Xenopus	N/A	no	0.866	0.937	0.539	1e-51
Q28H12	196	UMP-CMP kinase OS=Xenopus	no	no	0.866	0.923	0.539	1e-50
Q7ZWE9	196	UMP-CMP kinase OS=Danio r	no	no	0.885	0.943	0.533	1e-50
Q2KIW9	196	UMP-CMP kinase OS=Bos tau	yes	no	0.866	0.923	0.534	5e-50
P30085	196	UMP-CMP kinase OS=Homo sa	yes	no	0.866	0.923	0.534	6e-50
Q4KM73	196	UMP-CMP kinase OS=Rattus	yes	no	0.866	0.923	0.534	3e-49
Q29561	196	UMP-CMP kinase OS=Sus scr	yes	no	0.866	0.923	0.523	3e-49

>sp|O04905|UMPK_ARATH UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1

 Score =  344 bits (883), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/196 (83%), Positives = 182/196 (92%)

Query: 14  ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           A  + KKPTV+FVLGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNM
Sbjct: 7   ANGSGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNM 66

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS 133
           IKEGKIVPSEVTIKLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC 
Sbjct: 67  IKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCP 126

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP+  VF
Sbjct: 127 EEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVF 186

Query: 194 DAVKAVFTPKDEKAAA 209
           + VKA+F+P+ EK  A
Sbjct: 187 EEVKAIFSPEAEKVEA 202

Furnishes the cell with pyrimidines. Accepts UMP and CMP as phosphate acceptors with high activity; does not act on dCMP and dUMP.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 1EC: 4

>sp|O24464|KAD_PRUAR Adenylate kinase OS=Prunus armeniaca PE=2 SV=1

 Score =  248 bits (632), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 150/200 (75%), Gaps = 1/200 (0%)

Query: 4   VVETPVKEADATVTVK-KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           + ET   E++     K  P V FVLGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI S
Sbjct: 29  IWETFTSESEIPTPSKGSPFVTFVLGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIAS 88

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GS  G++I + I+EGKIVPS+VT++L+QK ME S N KFLIDGFPR+EENR AFE     
Sbjct: 89  GSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGA 148

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
           EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ K
Sbjct: 149 EPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHK 208

Query: 183 IDAAKPVAEVFDAVKAVFTP 202
           I+A   V E+F+ V+ +F P
Sbjct: 209 INAVGTVDEIFEKVRPIFAP 228

This small ubiquitous enzyme is essential for maintenance and cell growth.

Prunus armeniaca (taxid: 36596)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q5ZKE7|KCY_CHICK UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/191 (54%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+
Sbjct: 2   KPVVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGE 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V
Sbjct: 122 CDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF+ V  +F
Sbjct: 182 DEVFEKVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZX23|KCY_XENLA UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGK 61

Query: 79  IVPSEVTIKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME     ++   KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE +GKVRK+DA+K V
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V+ +F
Sbjct: 182 DEVFTKVQNIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q28H12|KCY_XENTR UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2

 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/191 (53%), Positives = 134/191 (70%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+
Sbjct: 2   KPFVVFVLGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGR 61

Query: 79  IVPSEVTIKLLQKAMEES----GN-DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LLQ+AME++    GN  KFLIDGFPRNE+N   +E     K +  FVLFFD
Sbjct: 62  IVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C  E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+K+DA+K V
Sbjct: 122 CDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V+ +F
Sbjct: 182 DEVFTKVQDIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q7ZWE9|KCY_DANRE UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 137/195 (70%), Gaps = 10/195 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEESGND-----KFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFD 131
           IVP ++TI LL+KAMEE+        +FLIDGFPRN++N   +  E   K + +FVLFFD
Sbjct: 62  IVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           CS E    R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V
Sbjct: 122 CSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSV 181

Query: 190 AEVFDAVKAVFTPKD 204
            EVF  VK +    D
Sbjct: 182 DEVFADVKNILEKDD 196

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q2KIW9|KCY_BOVIN UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2

 Score =  197 bits (500), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GK
Sbjct: 2   KPQVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|P30085|KCY_HUMAN UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3

 Score =  196 bits (499), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVQIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q4KM73|KCY_RAT UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 132/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVF  V  +F
Sbjct: 182 DEVFGDVMKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

>sp|Q29561|KCY_PIG UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/191 (52%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           +P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GK
Sbjct: 2   RPKVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGK 61

Query: 79  IVPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFD 131
           IVP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVKIF 192

Catalyzes specific phosphoryl transfer from ATP to UMP and CMP.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
224136530	199	predicted protein [Populus trichocarpa]	0.909	0.954	0.910	2e-98
118488800	199	unknown [Populus trichocarpa]	0.909	0.954	0.905	5e-98
255571119	210	uridylate kinase plant, putative [Ricinu	0.976	0.971	0.857	2e-97
224067399	199	predicted protein [Populus trichocarpa]	0.909	0.954	0.889	2e-96
357513083	208	Uridylate kinase [Medicago truncatula] g	0.990	0.995	0.806	2e-96
449432344	209	PREDICTED: UMP/CMP kinase-like [Cucumis	0.990	0.990	0.817	3e-96
351721579	207	uncharacterized protein LOC100500111 [Gl	0.985	0.995	0.830	4e-96
225454048	210	PREDICTED: uridylate kinase isoform 1 [V	1.0	0.995	0.823	1e-95
351726572	237	uncharacterized protein LOC100306603 [Gl	0.980	0.864	0.825	2e-95
388503986	211	unknown [Lotus japonicus]	0.990	0.981	0.814	1e-94

>gi|224136530|ref|XP_002326883.1| predicted protein [Populus trichocarpa] gi|222835198|gb|EEE73633.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/190 (91%), Positives = 185/190 (97%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+K+DAAKP+ EVF+ VKA
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPIDEVFEVVKA 188

Query: 199 VFTPKDEKAA 208
           +FTPKDEK A
Sbjct: 189 IFTPKDEKVA 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488800|gb|ABK96210.1| unknown [Populus trichocarpa]

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 172/190 (90%), Positives = 184/190 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTI LLQKAM++SGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFFDC EEEME
Sbjct: 69  IVPSEVTINLLQKAMQDSGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFDCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           RRIL+RNQGREDDN+ETIRKRFKVFLESSLPVV+YY++KGKV+K+DAAKP+ EVF+ VKA
Sbjct: 129 RRILSRNQGREDDNIETIRKRFKVFLESSLPVVEYYDSKGKVQKVDAAKPIDEVFEVVKA 188

Query: 199 VFTPKDEKAA 208
           +FTPKDEK A
Sbjct: 189 IFTPKDEKVA 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571119|ref|XP_002526510.1| uridylate kinase plant, putative [Ricinus communis] gi|223534185|gb|EEF35901.1| uridylate kinase plant, putative [Ricinus communis]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/204 (85%), Positives = 188/204 (92%)

Query: 3   TVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 62
           +VV    KE +  V  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS
Sbjct: 4   SVVGVARKEENGDVVEKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS 63

Query: 63  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           GSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE+VTKI
Sbjct: 64  GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFESVTKI 123

Query: 123 EPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK 182
            PEFVLFFDCSEEEMERR+L+RNQGR DDN+ETIRKRFKVFLESS+PVV+YYE+KGKVRK
Sbjct: 124 VPEFVLFFDCSEEEMERRLLSRNQGRVDDNIETIRKRFKVFLESSIPVVEYYESKGKVRK 183

Query: 183 IDAAKPVAEVFDAVKAVFTPKDEK 206
           IDAAK + EVF+ VKA+F  KDEK
Sbjct: 184 IDAAKSIEEVFEDVKAIFAQKDEK 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067399|ref|XP_002302480.1| predicted protein [Populus trichocarpa] gi|118488191|gb|ABK95915.1| unknown [Populus trichocarpa] gi|222844206|gb|EEE81753.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/190 (88%), Positives = 183/190 (96%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KKP V+FVLGGPGSGKGTQCAN+VEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK
Sbjct: 9   KKPAVIFVLGGPGSGKGTQCANVVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 68

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFEAVTKIEP FVLFF+C EEEME
Sbjct: 69  IVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEAVTKIEPAFVLFFNCPEEEME 128

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +RIL+RNQGREDDN+ETIRKRF VFLESSLPVV+YY++KGKVRK+DAAK V EVF+AVKA
Sbjct: 129 KRILSRNQGREDDNIETIRKRFNVFLESSLPVVEYYDSKGKVRKVDAAKSVEEVFEAVKA 188

Query: 199 VFTPKDEKAA 208
           +FTPK+EK A
Sbjct: 189 IFTPKEEKVA 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513083|ref|XP_003626830.1| Uridylate kinase [Medicago truncatula] gi|217075148|gb|ACJ85934.1| unknown [Medicago truncatula] gi|355520852|gb|AET01306.1| Uridylate kinase [Medicago truncatula] gi|388507198|gb|AFK41665.1| unknown [Medicago truncatula]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/207 (80%), Positives = 192/207 (92%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV+E   K+ + +V  K PTVVFVLGGPGSGKGTQCAN+VEHFG+THLSAGDLLRAEI
Sbjct: 1   MGTVIEAANKDTNGSVLNKNPTVVFVLGGPGSGKGTQCANVVEHFGFTHLSAGDLLRAEI 60

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTI+LLQ+A++++GNDKFLIDGFPRNEENRAAFE VT
Sbjct: 61  KSGSENGTMIQNMIKEGKIVPSEVTIRLLQQAIKDNGNDKFLIDGFPRNEENRAAFERVT 120

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVL+FDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFL+SSLPV+ YY+AKGKV
Sbjct: 121 GIEPAFVLYFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLDSSLPVINYYDAKGKV 180

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEKA 207
           RK+DAA+PV EVF++VKA+F PK+EKA
Sbjct: 181 RKVDAARPVEEVFESVKAIFGPKNEKA 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432344|ref|XP_004133959.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus] gi|449515542|ref|XP_004164808.1| PREDICTED: UMP/CMP kinase-like [Cucumis sativus]

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 170/208 (81%), Positives = 192/208 (92%), Gaps = 1/208 (0%)

Query: 1   MGTVVET-PVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MGTVV+  P+KE + ++  KKPTVVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGTVVDAAPIKETNGSLAEKKPTVVFVLGGPGSGKGTQCANIVQHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+A+EE+GN+KFLIDGFPRNEENRAAFE V
Sbjct: 61  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAIEETGNEKFLIDGFPRNEENRAAFEVV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           T IEP  VLFFDC EEEME+R+L+RN+GR DDN+ETIRKRF+VFLESS+PV+QYYE+K K
Sbjct: 121 TGIEPSIVLFFDCPEEEMEKRLLSRNEGRVDDNIETIRKRFRVFLESSIPVIQYYESKEK 180

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPKDEKA 207
           VRKIDAA+PV EVF++VKAVFTPK  KA
Sbjct: 181 VRKIDAARPVEEVFESVKAVFTPKSAKA 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721579|ref|NP_001236958.1| uncharacterized protein LOC100500111 [Glycine max] gi|255629285|gb|ACU14987.1| unknown [Glycine max]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 190/207 (91%), Gaps = 1/207 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K PTVVFVLGGPGSGKGTQCANIVE+FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPTVVFVLGGPGSGKGTQCANIVENFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFF+C EEEMERR+L+RNQGREDDN+ETIR+RFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFECPEEEMERRLLSRNQGREDDNIETIRRRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEKA 207
           RKIDAA+P+ EVF+ VK +F PK+EKA
Sbjct: 180 RKIDAARPIEEVFETVKGIFGPKNEKA 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454048|ref|XP_002263322.1| PREDICTED: uridylate kinase isoform 1 [Vitis vinifera] gi|359489116|ref|XP_003633878.1| PREDICTED: uridylate kinase isoform 2 [Vitis vinifera] gi|359489119|ref|XP_003633879.1| PREDICTED: uridylate kinase isoform 3 [Vitis vinifera] gi|297744838|emb|CBI38106.3| unnamed protein product [Vitis vinifera]

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/210 (82%), Positives = 190/210 (90%), Gaps = 1/210 (0%)

Query: 1   MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE 59
           MG+  E+ +KE +  +   KK  VVFVLGGPGSGKGTQCANIV+HFGYTHLSAGDLLRAE
Sbjct: 1   MGSAPESVIKETNENLLAEKKVKVVFVLGGPGSGKGTQCANIVKHFGYTHLSAGDLLRAE 60

Query: 60  IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
           IKSGSENG MIQ+MIKEGKIVPSEVTIKLLQ+A+ E  NDKFLIDGFPRNEENRAAFEAV
Sbjct: 61  IKSGSENGNMIQSMIKEGKIVPSEVTIKLLQRAILEDSNDKFLIDGFPRNEENRAAFEAV 120

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
           TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV++YYE+KGK
Sbjct: 121 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVIEYYESKGK 180

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPKDEKAAA 209
           VRKIDAA+ + EVF+AVKAVFTP +E+  A
Sbjct: 181 VRKIDAAQSIEEVFEAVKAVFTPTNEQVDA 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726572|ref|NP_001237387.1| uncharacterized protein LOC100306603 [Glycine max] gi|255629041|gb|ACU14865.1| unknown [Glycine max]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/206 (82%), Positives = 189/206 (91%), Gaps = 1/206 (0%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MGTV E   K+A+ ++  K P+VVFVLGGPGSGKGTQCANIV++FGYTHLSAGDLLRAEI
Sbjct: 1   MGTV-EAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
           KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM+ESGNDKFLIDGFPRNEENRAAFE VT
Sbjct: 60  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVT 119

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
            IEP FVLFFDC EEEMERR+L+RNQGREDDN+ETIRKRFKVFLESSLPV+ YY+AKGKV
Sbjct: 120 GIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPKDEK 206
            KIDAA+P+ EVF+ VKA+F PK++K
Sbjct: 180 HKIDAARPIEEVFETVKAIFGPKNDK 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503986|gb|AFK40059.1| unknown [Lotus japonicus]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/210 (81%), Positives = 189/210 (90%), Gaps = 3/210 (1%)

Query: 1   MGTVVETPVKEA---DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
           MGTVVE   K+A   + ++  K  TVVFVLGGPGSGKGTQC+NIV+HFGYTHLSAGDLLR
Sbjct: 1   MGTVVEAANKDAANGNGSILNKNLTVVFVLGGPGSGKGTQCSNIVKHFGYTHLSAGDLLR 60

Query: 58  AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFE 117
           AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ+AM E+GNDKFLIDGFPRNEENRAAFE
Sbjct: 61  AEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQRAMLENGNDKFLIDGFPRNEENRAAFE 120

Query: 118 AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK 177
            VT IEP FVLFFDC EEEMERR+L RNQGREDDN+ETIRKRF VFLESSLPV+ YY+AK
Sbjct: 121 KVTGIEPTFVLFFDCPEEEMERRLLGRNQGREDDNIETIRKRFNVFLESSLPVINYYDAK 180

Query: 178 GKVRKIDAAKPVAEVFDAVKAVFTPKDEKA 207
            KVRKIDAA+PV EVF++VKA+F+PK+EKA
Sbjct: 181 LKVRKIDAARPVEEVFESVKAIFSPKNEKA 210

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:1005716878	208	PYR6 [Arabidopsis thaliana (ta	0.861	0.865	0.861	1.2e-81
TAIR|locus:2101472	204	AT3G60180 [Arabidopsis thalian	0.956	0.980	0.695	1.6e-72
TAIR|locus:2122644	249	AT4G25280 [Arabidopsis thalian	0.832	0.698	0.620	3.7e-55
TAIR|locus:4515103290	136	AT3G60961 [Arabidopsis thalian	0.612	0.941	0.719	6e-48
UNIPROTKB|Q5ZKE7	196	CMPK1 "UMP-CMP kinase" [Gallus	0.832	0.887	0.538	4.4e-45
DICTYBASE|DDB_G0287495	195	pyrK "uridine monophosphate/cy	0.832	0.892	0.539	7.1e-45
ZFIN|ZDB-GENE-040426-2113	225	cmpk "cytidylate kinase" [Dani	0.851	0.791	0.526	5e-44
UNIPROTKB|Q2KIW9	196	CMPK1 "UMP-CMP kinase" [Bos ta	0.832	0.887	0.527	6.4e-44
UNIPROTKB|P30085	196	CMPK1 "UMP-CMP kinase" [Homo s	0.832	0.887	0.527	6.4e-44
UNIPROTKB|F1PIG2	228	CMPK1 "Uncharacterized protein	0.832	0.763	0.521	1e-43

TAIR|locus:1005716878 PYR6 [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 155/180 (86%), Positives = 171/180 (95%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI
Sbjct:    20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 79

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KLLQKA++E+GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQ
Sbjct:    80 KLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQ 139

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK 206
             GREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVRKI+AAKP+  VF+ VKA+F+P+ EK
Sbjct:   140 GREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSPEAEK 199

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS;IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0004127 "cytidylate kinase activity" evidence=IDA

GO:0009173 "pyrimidine ribonucleoside monophosphate metabolic process" evidence=TAS

TAIR|locus:2101472 AT3G60180 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/200 (69%), Positives = 164/200 (82%)

Query:     1 MGTVVETPVKEADAXXXXXXXXXXXXLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
             M T ++ P K+               LGGPGSGKGTQCAN+V+HF YTH SAGDLLRAEI
Sbjct:     1 METPIDAPNKDEHECPRWKKSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEI 60

Query:    61 KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
             KSGSE G MIQ+MI EG+IVPSE+T+KLL KAMEESGNDKFLIDGFPRNEENR  FE V 
Sbjct:    61 KSGSEFGAMIQSMIAEGRIVPSEITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVA 120

Query:   121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
             +IEP FVLFFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YYE+KGK+
Sbjct:   121 RIEPAFVLFFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYESKGKL 180

Query:   181 RKIDAAKPVAEVFDAVKAVF 200
             RKI+AAK   EVF+AV+ +F
Sbjct:   181 RKINAAKSSEEVFEAVRVLF 200

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:2122644 AT4G25280 [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 108/174 (62%), Positives = 132/174 (75%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQC  IVE FG  HLSAGDLLR EI   +ENG MI N+IK+GKIVPSEVT+
Sbjct:    49 LGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPSEVTV 108

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ 146
             KL+QK +E S N KFLIDGFPR EENR AFE + + +P+ VLFFDC EEEM +R+LNRNQ
Sbjct:   109 KLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPEEEMVKRVLNRNQ 168

Query:   147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
             GR DDN+ T++KR K+F   + PV+ YY+ KGK+  I+A   V ++F  V  +F
Sbjct:   169 GRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQHVLPIF 222

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISS

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TAIR|locus:4515103290 AT3G60961 [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 95/132 (71%), Positives = 115/132 (87%)

Query:    73 MIKEGKIVPSEVTIKLLQKAMEES----GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL 128
             MI EG+IVPSE+T+KLL KAMEES    GNDKFLIDGFPRNEENR  FE V +IEP FVL
Sbjct:     1 MIAEGRIVPSEITVKLLCKAMEESFQVSGNDKFLIDGFPRNEENRIVFENVARIEPAFVL 60

Query:   129 FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKP 188
             FFDC EEE+ERRI++RNQGREDDN+ETI+KRFKVF+ES+LP++ YY++KGK+RKI+AAK 
Sbjct:    61 FFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYQSKGKLRKINAAKS 120

Query:   189 VAEVFDAVKAVF 200
               EVF+AV+ +F
Sbjct:   121 SEEVFEAVRVLF 132

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

UNIPROTKB|Q5ZKE7 CMPK1 "UMP-CMP kinase" [Gallus gallus (taxid:9031)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 99/184 (53%), Positives = 127/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEIT 68

Query:    86 IKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++AM++     S  +KFLIDGFPRNE+N   +      K +  FVLFFDC  E   
Sbjct:    69 ISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+K V EVF+ V
Sbjct:   129 GRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VQIF 192

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287495 pyrK "uridine monophosphate/cytidine monophosphate kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 96/178 (53%), Positives = 127/178 (71%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
             LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct:    13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 72

Query:    87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
             KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct:    73 KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 132

Query:   145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
              +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct:   133 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190

GO:0043100 "pyrimidine nucleobase salvage" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0046705 "CDP biosynthetic process" evidence=IDA

GO:0043173 "nucleotide salvage" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA;IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0005622 "intracellular" evidence=IC

GO:0004127 "cytidylate kinase activity" evidence=IEA;IDA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2113 cmpk "cytidylate kinase" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 99/188 (52%), Positives = 133/188 (70%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++T
Sbjct:    38 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQIT 97

Query:    86 IKLLQKAMEES--GNDK---FLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEME 138
             I LL+KAMEE+   ++K   FLIDGFPRN++N   +  E   K + +FVLFFDCS E   
Sbjct:    98 INLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCI 157

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P+++ YE +GKV++IDA++ V EVF  V
Sbjct:   158 DRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVFADV 217

Query:   197 KAVFTPKD 204
             K +    D
Sbjct:   218 KNILEKDD 225

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2KIW9 CMPK1 "UMP-CMP kinase" [Bos taurus (taxid:9913)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKVRKIDA+K V EVFD V
Sbjct:   129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFDEV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VKIF 192

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

UNIPROTKB|P30085 CMPK1 "UMP-CMP kinase" [Homo sapiens (taxid:9606)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 97/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct:     9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:    69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct:   129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188

Query:   197 KAVF 200
               +F
Sbjct:   189 VQIF 192

GO:0005524 "ATP binding" evidence=IEA

GO:0004127 "cytidylate kinase activity" evidence=IEA

GO:0006225 "UDP biosynthetic process" evidence=IEA

GO:0006227 "dUDP biosynthetic process" evidence=IEA

GO:0006240 "dCDP biosynthetic process" evidence=IEA

GO:0018963 "phthalate metabolic process" evidence=IEA

GO:0022602 "ovulation cycle process" evidence=IEA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0046705 "CDP biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004849 "uridine kinase activity" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0006222 "UMP biosynthetic process" evidence=TAS

UNIPROTKB|F1PIG2 CMPK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 96/184 (52%), Positives = 128/184 (69%)

Query:    27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
             LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+T
Sbjct:    41 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPASQYGELIEKYIKDGKIVPVEIT 100

Query:    86 IKLLQKAMEES--GN---DKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
             I LL++ M+++   N   +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct:   101 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 160

Query:   139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
              R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct:   161 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 220

Query:   197 KAVF 200
               +F
Sbjct:   221 VKIF 224

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZX23	KCY_XENLA	2, ., 7, ., 4, ., 1, 4	0.5392	0.8660	0.9378	N/A	no
Q89ZJ0	KAD_BACTN	2, ., 7, ., 4, ., 3	0.3655	0.8277	0.9153	yes	no
B0RP52	KAD_XANCB	2, ., 7, ., 4, ., 3	0.3693	0.8133	0.9090	yes	no
Q5ZKE7	KCY_CHICK	2, ., 7, ., 4, ., 1, 4	0.5497	0.8660	0.9234	yes	no
B9L9Y8	KAD_NAUPA	2, ., 7, ., 4, ., 3	0.3891	0.8516	0.9270	yes	no
Q8DML4	KAD_THEEB	2, ., 7, ., 4, ., 3	0.3567	0.8373	0.8974	yes	no
B4SI37	KAD_STRM5	2, ., 7, ., 4, ., 3	0.3542	0.8086	0.9037	yes	no
Q2KIW9	KCY_BOVIN	2, ., 7, ., 4, ., 1, 4	0.5340	0.8660	0.9234	yes	no
Q8P5P5	KAD_XANCP	2, ., 7, ., 4, ., 3	0.3631	0.8277	0.9251	yes	no
P15700	UMPK_YEAST	2, ., 7, ., 4, ., -	0.4890	0.8373	0.8578	yes	no
Q64XA6	KAD_BACFR	2, ., 7, ., 4, ., 3	0.3783	0.8516	0.9417	yes	no
Q8DS33	KAD_STRMU	2, ., 7, ., 4, ., 3	0.3398	0.8468	0.8349	yes	no
Q4KM73	KCY_RAT	2, ., 7, ., 4, ., 1, 4	0.5340	0.8660	0.9234	yes	no
Q8PH23	KAD_XANAC	2, ., 7, ., 4, ., 3	0.3631	0.8277	0.9251	yes	no
Q5LGH0	KAD_BACFN	2, ., 7, ., 4, ., 3	0.3783	0.8516	0.9417	yes	no
Q2P743	KAD_XANOM	2, ., 7, ., 4, ., 3	0.3611	0.8325	0.9304	yes	no
B2RIY8	KAD_PORG3	2, ., 7, ., 4, ., 3	0.3485	0.8086	0.8711	yes	no
Q9DBP5	KCY_MOUSE	2, ., 7, ., 4, ., 1, 4	0.5340	0.8660	0.9234	yes	no
O04905	UMPK_ARATH	2, ., 7, ., 4, ., 1, 4	0.8367	0.9377	0.9702	yes	no
A6L0Z9	KAD_BACV8	2, ., 7, ., 4, ., 3	0.3978	0.8277	0.9153	yes	no
Q29561	KCY_PIG	2, ., 7, ., 4, ., 1, 4	0.5235	0.8660	0.9234	yes	no
P30085	KCY_HUMAN	2, ., 7, ., 4, ., 1, 4	0.5340	0.8660	0.9234	yes	no
A7HWT2	KAD_PARL1	2, ., 7, ., 4, ., 3	0.3440	0.8468	0.8634	yes	no
P20425	KCY_DICDI	2, ., 7, ., 4, ., 1, 4	0.5513	0.8660	0.9282	yes	no
B1VEX6	KAD_CORU7	2, ., 7, ., 4, ., 3	0.375	0.8038	0.9281	yes	no
O24464	KAD_PRUAR	2, ., 7, ., 4, ., 3	0.59	0.9521	0.8614	N/A	no
A5GVX9	KAD_SYNR3	2, ., 7, ., 4, ., 3	0.3406	0.8373	0.9615	yes	no
O59771	UMPK_SCHPO	2, ., 7, ., 4, ., -	0.4677	0.8468	0.9267	yes	no
A6LD69	KAD_PARD8	2, ., 7, ., 4, ., 3	0.3444	0.8325	0.9157	yes	no
Q3BPM9	KAD_XANC5	2, ., 7, ., 4, ., 3	0.3631	0.8277	0.9251	yes	no
Q4UYC6	KAD_XANC8	2, ., 7, ., 4, ., 3	0.3631	0.8277	0.9251	yes	no
Q7MW54	KAD_PORGI	2, ., 7, ., 4, ., 3	0.3485	0.8086	0.8711	yes	no
Q5H4A4	KAD_XANOR	2, ., 7, ., 4, ., 3	0.3611	0.8325	0.9304	yes	no
Q6A6Q4	KAD_PROAC	2, ., 7, ., 4, ., 3	0.3262	0.8660	0.9576	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.963
4th Layer	2.7.4.14	0.914
3rd Layer	2.7.4.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_400378	SubName- Full=Putative uncharacterized protein; (200 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400106	RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)						•	•		0.904
	eugene3.00051017	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (810 aa)						•			0.904
	fgenesh4_pm.C_LG_V000114	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (817 aa)						•			0.904
	estExt_fgenesh4_pg.C_LG_VII0648	ribonucleoside-diphosphate reductase (EC-1.17.4.1); Provides the precursors necessary for DNA s [...] (813 aa)						•			0.904
	fgenesh4_pg.C_LG_XII000913	hypothetical protein (152 aa)						•	•		0.903
	fgenesh4_pg.C_LG_I002334	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	estExt_Genewise1_v1.C_880196	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (329 aa)						•			0.903
	gw1.VIII.327.1	ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa)						•			0.902
	gw1.II.1445.1	SubName- Full=Putative uncharacterized protein; (164 aa)						•	•		0.902
	gw1.XIII.2192.1	polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa)						•	•		0.901

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	1e-105
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	6e-90
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	2e-68
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	3e-62
pfam00406	186	pfam00406, ADK, Adenylate kinase	4e-59
TIGR01351	210	TIGR01351, adk, adenylate kinase	2e-52
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	1e-51
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	5e-44
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	2e-38
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	6e-37
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	1e-32
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	2e-30
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	9e-30
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	5e-28
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	3e-24
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	9e-24
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	1e-20
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	4e-20
PLN02674	244	PLN02674, PLN02674, adenylate kinase	4e-19
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	8e-16
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	2e-14
pfam13207	114	pfam13207, AAA_17, AAA domain	5e-09
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-05
pfam13238	128	pfam13238, AAA_18, AAA domain	2e-05
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	2e-04
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	2e-04
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	5e-04
COG0125	208	COG0125, Tmk, Thymidylate kinase [Nucleotide trans	0.002
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	0.002
cd01672	200	cd01672, TMPK, Thymidine monophosphate kinase (TMP	0.003

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score =  300 bits (771), Expect = e-105
 Identities = 118/182 (64%), Positives = 149/182 (81%), Gaps = 4/182 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           VVFVLGGPGSGKGTQCA IVE+FG+THLSAGDLLRAEIKSGSENG +I++MIK GKIVPS
Sbjct: 1   VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPS 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERR 140
           EVT+KLL+ A++  G+ KFLIDGFPRNEEN  A+E +   K+  +FVLFFDC EE M +R
Sbjct: 61  EVTVKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR 120

Query: 141 ILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +L R Q  GR DDN+E+I+KRF+ + E +LPV+++YE KGKV++I+A   V EVF+ V+ 
Sbjct: 121 LLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEK 180

Query: 199 VF 200
           +F
Sbjct: 181 IF 182

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score =  263 bits (674), Expect = 6e-90
 Identities = 120/182 (65%), Positives = 140/182 (76%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P + FVLGGPGSGKGTQC  IVE FG+ HLSAGDLLR EI S SE+G MI N IKEGK
Sbjct: 41  KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGK 100

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           IVPSEVT+KL+QK ME S N+KFLIDGFPR EENR AFE +   EP  VLFFDC EEEM 
Sbjct: 101 IVPSEVTVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMV 160

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           +R+LNRNQGR DDN++TI+KR KVF   +LPV+ YY  KGK+  I+A   V E+F+ V+ 
Sbjct: 161 KRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRP 220

Query: 199 VF 200
           +F
Sbjct: 221 IF 222

Length = 234

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  207 bits (530), Expect = 2e-68
 Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 24/194 (12%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
            + +LG PGSGKGTQ   + + +G  H+S GDLLR EI SG+E G   +  I  GK+VP 
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 83  EVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMER 139
           E+ IKLL++ +++      F++DGFPR  +   A + +    I+P+ V+  D  +E +  
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIE 120

Query: 140 RILNR---------------------NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
           RIL R                        R DDN ETI+KR +V+ E + P++ YY+ KG
Sbjct: 121 RILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKG 180

Query: 179 KVRKIDAAKPVAEV 192
           K+ +ID +  + EV
Sbjct: 181 KLVEIDGSGDIDEV 194

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score =  191 bits (487), Expect = 3e-62
 Identities = 88/183 (48%), Positives = 123/183 (67%), Gaps = 7/183 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            K  ++F++GGPGSGKGTQC  IVE +G+THLS GDLLRAE+ SGSE G  +Q +++ G 
Sbjct: 1   AKCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGD 60

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEE 135
           +VP +  + LL+ AM  +      FLIDG+PR  +    FE   +I  P  VL+FDCSE+
Sbjct: 61  LVPLDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFER--RIGPPTLVLYFDCSED 118

Query: 136 EMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M +R+L R +  GR DDN +TI+KR + + +++ PV+ YYE KGK+RKI+A   V +VF
Sbjct: 119 TMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVF 178

Query: 194 DAV 196
             V
Sbjct: 179 LQV 181

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  183 bits (467), Expect = 4e-59
 Identities = 66/186 (35%), Positives = 100/186 (53%), Gaps = 32/186 (17%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   IV+ +G  HLS GDLLRAE+KSG+E G   +  + +G++VP EV 
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 86  IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           I L+++ +E     + FL+DGFPR      A E + +  I+ ++V+ FD  +E +  R+ 
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEMLEYGIKLDYVIEFDVPDEVLVERLT 120

Query: 143 NRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET++KR + + + + PV+ Y
Sbjct: 121 GRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDY 180

Query: 174 YEAKGK 179
           Y+ KGK
Sbjct: 181 YKKKGK 186

Length = 186

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  167 bits (424), Expect = 2e-52
 Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 32/209 (15%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +V  LG PGSGKGTQ   I E +G  H+S GDLLRAEIK+G+  G   +  +++G++VP 
Sbjct: 2   LVL-LGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 83  EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
           E+  +L+++ + ++    + F++DGFPR      A +A+ K + + V+  D  +EE+  R
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120

Query: 141 ILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVV 171
           +  R                                REDD  E ++KR +V+ E + P++
Sbjct: 121 LSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLI 180

Query: 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            YY+ +G + +ID   P+ EV+  +    
Sbjct: 181 DYYKKRGILVQIDGNGPIDEVWKRILEAL 209

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  165 bits (420), Expect = 1e-51
 Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 33/206 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E +G  H+S GD+LRA +K+G+E G   ++ +  G++VP E+ I
Sbjct: 6   LGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++ + +      FL+DGFPR      A + + K   I+ + V+  D  +EE+  R+ 
Sbjct: 66  GLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLS 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+RKR +V+ + + P++ Y
Sbjct: 126 GRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDY 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAV 199
           Y+ KGK++KID    + EVF  +   
Sbjct: 186 YKKKGKLKKIDGTGSIDEVFADILKA 211

Length = 215

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  144 bits (366), Expect = 5e-44
 Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG PG+GK T    + +  G  HL  GD+LRA I   +E G  I+  I +G++VP E
Sbjct: 3   ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDE 62

Query: 84  VTIKLLQKAMEES-GNDKFLIDGFPRN---EENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +   L+++ ++E+     F++DGFPR                +  + V+  D  EE +  
Sbjct: 63  IVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
           R+L R   REDDN ET++KR KV+ E + P+++YY        ID +  + EV   +  
Sbjct: 123 RLLGRR-VREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILK 175

Length = 178

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  130 bits (328), Expect = 2e-38
 Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 8/181 (4%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + EH    H+S GD+LR  IK  +  G   Q  + +G++VP ++ +
Sbjct: 7   LGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVL 66

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAF--EAVTKI--EPEFVLFFDCSEEEMERRI 141
            L+Q+ +++      +++DGFPR    +AAF  E + +I    E V+  D  ++ +  R+
Sbjct: 67  DLVQERLQQPDAANGWILDGFPRK-VTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL 125

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           L R  GR+DD  E IR+R +V+ E + P++ YY  + K+  ID  + V  V   +KA   
Sbjct: 126 LAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183

Query: 202 P 202
           P
Sbjct: 184 P 184

Length = 184

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score =  127 bits (320), Expect = 6e-37
 Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 11/192 (5%)

Query: 16  VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
           +T  K  VV  LG PG+GKGTQ   + +  G   LS GD+LR  +  G+E G   + +++
Sbjct: 1   MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIME 60

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLF 129
            G +VP E+ + L++  +      + + DGFPR     A  EA+ ++  E       V+ 
Sbjct: 61  AGDLVPDELILALIRDELAGMEPVRVIFDGFPRTL---AQAEALDRLLEELGARLLAVVL 117

Query: 130 FDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK 187
            +  +EE+ RRI+ R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D   
Sbjct: 118 LEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLG 177

Query: 188 PVAEVFDAVKAV 199
              EV+  +   
Sbjct: 178 TPDEVYARILKA 189

Length = 191

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  115 bits (290), Expect = 1e-32
 Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 5/176 (2%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ A +    G  HLS GDLLR+E+ +GS  G   + ++  G++V   + +
Sbjct: 8   LGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVL 67

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
            +++  ++   +  +L+DGFPR      A E +    K   E V+  +  +  +  R+L 
Sbjct: 68  AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLA 127

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R  GR DDN   IR R +V+ E + P++ +Y  +G ++ ++A   +  + + ++ V
Sbjct: 128 R--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKV 181

Length = 183

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score =  110 bits (277), Expect = 2e-30
 Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 39/210 (18%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-----IKSGSENGTMIQNMIKEGK 78
           + +LG PG+GKGTQ +N+ E FG  H++ GD LRA          +E  T  + M   G+
Sbjct: 6   ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYM-DAGE 64

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           +VP  V  +++++A+ ++  D F++DG+PRN E     E++T +  + VL+ D SEEE+ 
Sbjct: 65  LVPDAVVNEIVEEALSDA--DGFVLDGYPRNLEQAEYLESITDL--DVVLYLDVSEEELV 120

Query: 139 RRILNR--------------NQ---------------GREDDNVETIRKRFKVFLESSLP 169
            R+  R              NQ                R+DD  ET+R+R  VF E++ P
Sbjct: 121 DRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEP 180

Query: 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           V+++Y  +G + ++D  +   EV+  ++  
Sbjct: 181 VIEHYRDQGVLVEVDGEQTPDEVWADIQDA 210

Length = 215

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  108 bits (271), Expect = 9e-30
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 10/184 (5%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P +GKGTQ   +VE  G   LS GD+LRA I SGSE G  ++ ++  G++V  E+ I 
Sbjct: 7   GPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIA 66

Query: 88  LLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRI 141
           L+++ + E       + DGFPR      A + +      KI  + V+     +E +  RI
Sbjct: 67  LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKI--DVVIRLKVDDEALIERI 124

Query: 142 LNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           + R   QGR DDN E    R   +   + P++ YY  +GK+ ++D    +  V  ++ A 
Sbjct: 125 VKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAA 184

Query: 200 FTPK 203
               
Sbjct: 185 LEGV 188

Length = 188

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  103 bits (259), Expect = 5e-28
 Identities = 52/175 (29%), Positives = 94/175 (53%), Gaps = 6/175 (3%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           +  +G PG+GKGTQ   + E      +S GD+LR  +K+ +  G   +  +  G +VP  
Sbjct: 4   IIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDS 63

Query: 84  VTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMER 139
           V I +++  + E+   + FL+DGFPR  E   A +A+ K      +  +  +  + E+ +
Sbjct: 64  VVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLK 123

Query: 140 RILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 192
           R+L R   +GR DDN  TI+ R   + + +LP++ +Y A+ K+ +++    + EV
Sbjct: 124 RLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEV 178

Length = 186

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score = 96.1 bits (239), Expect = 3e-24
 Identities = 65/202 (32%), Positives = 89/202 (44%), Gaps = 50/202 (24%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           VF LG PG GKGT  + + +  G  H++ GDL+R EIKS    G  ++ ++ +GK+VP E
Sbjct: 33  VF-LGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDE 91

Query: 84  VTIKLLQK---AMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-------PEFVLFFDCS 133
           +   LL K   A EE G   F++DGFPR        E VT I+        E VL   C 
Sbjct: 92  IIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKC- 150

Query: 134 EEEMERRIL-----NRN------------------------------QGREDDNVETIRK 158
              + RRI      N N                                R DD  E ++ 
Sbjct: 151 ---LGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207

Query: 159 RFKVFLESSLPVVQYYEAKGKV 180
           R +V+ E S PV  +Y  +GK+
Sbjct: 208 RLRVYKEESQPVEDFYRKRGKL 229

Length = 261

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score = 97.6 bits (243), Expect = 9e-24
 Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 30/201 (14%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  IV  FG  H+S GDLLRAE+ +G++ G   +  +  G++VP E+ I 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 88  LLQK--AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
           ++    + E++    +L+DG+PR+     + E + KI P+  +  D  +E +  R + R 
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKL-KIRPDIFILLDVPDEILIDRCVGRR 122

Query: 146 QG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
                                      R DD  E ++ R +++ +++  ++  Y     +
Sbjct: 123 LDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IM 180

Query: 181 RKIDAAKPVAEVFDAVKAVFT 201
            KID  +P   VF+ + ++ +
Sbjct: 181 VKIDGNRPKEVVFEEISSLLS 201

Length = 505

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 85.3 bits (211), Expect = 1e-20
 Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 35/201 (17%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +VF LG PGSGKGT    +     Y H+S GDL R  I + +  G  I+ +++ G++VP 
Sbjct: 3   LVF-LGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD 61

Query: 83  EVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERR 140
            +TIK+++  +     ND F++DGFPRN  N+A  +A+ K  P   ++ F   EE + +R
Sbjct: 62  SITIKIVEDKINTIKNNDNFILDGFPRN-INQA--KALDKFLPNIKIINFLIDEELLIKR 118

Query: 141 ILNRN-------------------------QG----REDDNVETIRKRFKVFLESSLPVV 171
           +  R                          +G    R+DD  E+++ R + +   + P++
Sbjct: 119 LSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLI 178

Query: 172 QYYEAKGKVRKIDAAKPVAEV 192
           ++Y    ++  IDA+K + EV
Sbjct: 179 EFYSKCNRLNNIDASKDIDEV 199

Length = 211

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 86.1 bits (213), Expect = 4e-20
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 19/203 (9%)

Query: 26  VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT 85
           +LG PG+GKGTQ   +V+ +G   LS GD+LRA + +G+  G   ++++  G +VP EV 
Sbjct: 5   LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVV 64

Query: 86  IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSE----EEM 137
           + ++   +E+    + F++DGFPR      A +A+ K   ++ + V+    +E      +
Sbjct: 65  VGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARV 124

Query: 138 ERRILN-RNQG---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV- 192
           E R+   R +G   R DD  E + KR   +   + P+V YY  K K+  +D    + EV 
Sbjct: 125 ETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVT 184

Query: 193 ------FDAVKAVFTPKDEKAAA 209
                   AV A    K  K  A
Sbjct: 185 REIGRVLAAVGAANAKKAAKTPA 207

Length = 333

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score = 81.9 bits (202), Expect = 4e-19
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 37/213 (17%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PGSGKGTQ   I + +   HL+ GD+LRA + + +  G   +  + +G++V  +
Sbjct: 34  LILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 93

Query: 84  VTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEM 137
           + + ++ +AM++    K F++DGFPR        + +      KI+   VL F   +  +
Sbjct: 94  LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDK--VLNFAIDDAIL 151

Query: 138 ERRILNR----NQG-------------------------REDDNVETIRKRFKVFLESSL 168
           E RI  R    + G                         R+DD    ++ R + F + + 
Sbjct: 152 EERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTE 211

Query: 169 PVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           PV+ YY  KG V  + A KP  EV   V+   +
Sbjct: 212 PVIDYYAKKGVVANLHAEKPPKEVTAEVQKALS 244

Length = 244

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 72.9 bits (179), Expect = 8e-16
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 48/205 (23%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +K P  + + G PG GKGT    + +     H++ G++LR EIK+ +  G  IQ ++  G
Sbjct: 3   LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSG 62

Query: 78  KIVPSEVTIKLLQKAMEESGNDK---FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS- 133
            +VP  + I +++  + +  +D    F++DGFPRN +       +T I+    LF +   
Sbjct: 63  NLVPDNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNID----LFVNIYL 118

Query: 134 ------EEEMERRILN---RN-------------------------------QGREDDNV 153
                 ++ + RRI N   RN                               Q R DD  
Sbjct: 119 PRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTE 178

Query: 154 ETIRKRFKVFLESSLPVVQYYEAKG 178
           E +  R   +  ++ P++Q+++ + 
Sbjct: 179 EIVAHRLNTYESTNSPIIQFFKNEN 203

Length = 229

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 40/132 (30%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G  GSGKGTQ A + + +   H+ +G + R  I  G+E G   +  I  G +VP +
Sbjct: 3   ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDD 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERR 140
           +TI ++ + +++ G + +L+DGFPRN  +    +EA+ K  ++ ++V+      E  + R
Sbjct: 63  ITIPMILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122

Query: 141 ILNRNQGREDDN 152
           I+ R   + D+N
Sbjct: 123 IMGRRLCKNDNN 134

Length = 223

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ + G PGSGK T    + E  G   +S  DLLR E  +  ++G +             
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGEL----------DDI 50

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           ++ ++LL++ ++E    +++IDG   +       EA   +     L        + +R L
Sbjct: 51  DIDLELLEEILDELAKQEWVIDGVRESTLELRLEEADLVV--FLDLPLPACRFRLLKRRL 108

Query: 143 NRNQGR 148
            R +G 
Sbjct: 109 QRGRGE 114

Length = 114

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 13/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++ ++G PGSGK T    ++   G   LS+ D LR  ++ G     +       G++   
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSS-DTLRKRLR-GDGPPDISYYARASGRVY-- 56

Query: 83  EVTIKLLQKAMEESGNDKFLID-GFPRNEENRAAFEAVTKIE--PEFVLFFDCSEEEMER 139
           +  ++L ++A+  +G    ++D      EE RA    + +    P  +++ +  EE +  
Sbjct: 57  QRLLELAREAL-RAGRP-VIVDATNLSREE-RARLIDLARRYGAPVRIVYLEAPEEVLRE 113

Query: 140 RILNRNQGREDD---NVETIRKRFKVF 163
           R   R +   D        + +    F
Sbjct: 114 RNAQRERSGGDPSDVPEAVLDRMLARF 140

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 18/142 (12%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PGSGK T    + E  G        +LR   K       + + +  E K +  +
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGD-------VLRDLAKENGLVLELDEEITDESKRLDED 53

Query: 84  VTIKLLQKAMEESGNDK----FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
              KLL K  +           +IDG     E     + V        +      EE+  
Sbjct: 54  KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLV-------FVVLRADPEELLE 106

Query: 140 RILNRNQGREDDNVETIRKRFK 161
           R+  R    E  +     +  K
Sbjct: 107 RLKKRGYSEEKISENDEAEILK 128

Length = 128

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 40/142 (28%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTM--IQNMIKEGKIVPSEV 84
           G  GSGK T    + +  G  +L  G +   E+ K  SE   +  ++  + E        
Sbjct: 6   GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDE-------- 57

Query: 85  TIKLLQKAMEESGNDKFLIDG-------FPRNEENRAAFEAVTKIEPEFVLFFDCSEEE- 136
                Q+ + +      +++G       FP         +A  KI      F   S E  
Sbjct: 58  ----RQRELAKKPG--IVLEGRDIGTVVFP---------DADLKI------FLTASPEVR 96

Query: 137 MERRILNRNQGREDDNVETIRK 158
            +RR        E  ++E I  
Sbjct: 97  AKRRAKQLQAKGEGVDLEEILA 118

Length = 147

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 28 GGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          G PGSGK T    + E  G  H+SAG++ R
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36

Length = 180

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          V+ + G PGSGK T    + EH G   +SAG + R
Sbjct: 2  VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR 36

Length = 179

>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 73/221 (33%)

Query: 28  GGPGSGKGTQCANIVEHF-------------GYTHLSAGDLLRAEIKSGSEN------GT 68
           G  G+GK TQ   + E               G T    G+ +R  + +G E         
Sbjct: 10  GIDGAGKTTQAELLKERLEERGIKVVLTREPGGT--PIGEKIRELLLNGEEKLSPKAEAL 67

Query: 69  M------------IQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI-----DGFPRNEE 111
           +            I+  +KEGK+V                  D+++       G  R  +
Sbjct: 68  LFAADRAQHLEEVIKPALKEGKVVIC----------------DRYVDSSLAYQGGGRGLD 111

Query: 112 NRAAFE----AVTKIEPEFVLFFDCSEEEMERRILNRNQGR------EDDNVETIRKRFK 161
                     A   ++P+  L+ D   E    RI  R + R      +D+ +E +R+ + 
Sbjct: 112 LDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYL 171

Query: 162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202
                        +   ++  IDA++P+ EV + +  +   
Sbjct: 172 ELAA---------KFPERIIVIDASRPLEEVHEEILKILKE 203

Length = 208

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLR 57
          ++ + G PGSGK T    + E      +SAGD+ R
Sbjct: 2  IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 36/216 (16%), Positives = 64/216 (29%), Gaps = 69/216 (31%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL--------SAGDLLRAEIKSGSENG--------- 67
           G  G+GK T    + E     GY  +          G+ +R  +    +           
Sbjct: 7   GIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLL 66

Query: 68  ----------TMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID-----GFPRNEEN 112
                      +I+  +  GKIV S                D+F+       G  R    
Sbjct: 67  FAADRAQHVEEVIKPALARGKIVLS----------------DRFVDSSLAYQGAGRGLGE 110

Query: 113 RAAFE----AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV-----ETIRKRFKVF 163
                    A   ++P+  +  D   E    RI  R +   D+       E +R+ +   
Sbjct: 111 ALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLEL 170

Query: 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
                      +   ++  IDA++P+ EV   +   
Sbjct: 171 AA---------QEPERIIVIDASQPLEEVLAEILKA 197

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	100.0
PLN02674	244	adenylate kinase	100.0
PLN02459	261	probable adenylate kinase	100.0
PRK14531	183	adenylate kinase; Provisional	100.0
PLN02200	234	adenylate kinase family protein	100.0
PRK14527	191	adenylate kinase; Provisional	100.0
PRK13808	333	adenylate kinase; Provisional	100.0
PRK14528	186	adenylate kinase; Provisional	100.0
PRK14532	188	adenylate kinase; Provisional	100.0
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	100.0
PRK14529	223	adenylate kinase; Provisional	100.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	100.0
PRK14526	211	adenylate kinase; Provisional	99.98
PRK02496	184	adk adenylate kinase; Provisional	99.98
PRK00279	215	adk adenylate kinase; Reviewed	99.98
PTZ00088	229	adenylate kinase 1; Provisional	99.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.97
PRK14530	215	adenylate kinase; Provisional	99.97
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.96
PLN02842	505	nucleotide kinase	99.95
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	99.92
PRK01184	184	hypothetical protein; Provisional	99.86
PRK13973	213	thymidylate kinase; Provisional	99.85
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	99.82
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.81
PRK13975	196	thymidylate kinase; Provisional	99.81
PRK06762	166	hypothetical protein; Provisional	99.81
PRK04040	188	adenylate kinase; Provisional	99.81
PLN02924	220	thymidylate kinase	99.81
PRK03839	180	putative kinase; Provisional	99.8
PRK13974	212	thymidylate kinase; Provisional	99.8
PRK06217	183	hypothetical protein; Validated	99.79
PRK13949	169	shikimate kinase; Provisional	99.79
PRK08356	195	hypothetical protein; Provisional	99.79
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.78
PRK13948	182	shikimate kinase; Provisional	99.78
PRK08233	182	hypothetical protein; Provisional	99.78
PHA02530	300	pseT polynucleotide kinase; Provisional	99.77
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.76
PRK00698	205	tmk thymidylate kinase; Validated	99.76
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.75
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.75
PRK00131	175	aroK shikimate kinase; Reviewed	99.75
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	99.74
PRK04182	180	cytidylate kinase; Provisional	99.74
PRK03731	171	aroL shikimate kinase II; Reviewed	99.74
PRK13946	184	shikimate kinase; Provisional	99.74
PRK08118	167	topology modulation protein; Reviewed	99.74
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.74
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.74
PRK07933	213	thymidylate kinase; Validated	99.73
PRK05057	172	aroK shikimate kinase I; Reviewed	99.73
PRK13947	171	shikimate kinase; Provisional	99.72
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.71
PRK13976	209	thymidylate kinase; Provisional	99.71
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.71
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.7
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	99.7
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.69
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.69
PRK00625	173	shikimate kinase; Provisional	99.69
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.69
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.69
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.68
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.68
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.68
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.67
PRK12338	319	hypothetical protein; Provisional	99.67
PLN02422	232	dephospho-CoA kinase	99.67
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.65
PLN02199	303	shikimate kinase	99.65
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.65
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.64
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	99.64
PTZ00451	244	dephospho-CoA kinase; Provisional	99.64
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.64
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.63
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.63
PRK05480	209	uridine/cytidine kinase; Provisional	99.62
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.62
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	99.62
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.62
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.62
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.61
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.61
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.61
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	99.6
PRK14737	186	gmk guanylate kinase; Provisional	99.6
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.59
PRK07261	171	topology modulation protein; Provisional	99.59
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.59
PRK09825	176	idnK D-gluconate kinase; Provisional	99.58
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.57
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.57
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.57
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.57
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.57
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.57
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.57
PRK05541	176	adenylylsulfate kinase; Provisional	99.56
PRK06547	172	hypothetical protein; Provisional	99.55
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.55
PRK00023	225	cmk cytidylate kinase; Provisional	99.55
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.55
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	99.54
PRK14738	206	gmk guanylate kinase; Provisional	99.53
PRK11545	163	gntK gluconate kinase 1; Provisional	99.52
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.51
PTZ00301	210	uridine kinase; Provisional	99.51
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.51
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.5
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.49
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.49
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.49
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.49
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.49
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.48
PRK00300	205	gmk guanylate kinase; Provisional	99.47
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.46
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	99.46
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.46
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.46
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.45
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.45
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.45
PRK00889	175	adenylylsulfate kinase; Provisional	99.44
PRK06696	223	uridine kinase; Validated	99.43
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.43
PRK03846	198	adenylylsulfate kinase; Provisional	99.42
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.4
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.39
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.39
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.39
PRK07667	193	uridine kinase; Provisional	99.38
COG0645	170	Predicted kinase [General function prediction only	99.37
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.36
COG4639	168	Predicted kinase [General function prediction only	99.36
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.33
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.32
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.32
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.32
PHA03132	580	thymidine kinase; Provisional	99.3
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.29
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.29
PLN02348	395	phosphoribulokinase	99.29
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.27
PRK05439	311	pantothenate kinase; Provisional	99.26
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.25
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	99.24
COG3709	192	Uncharacterized component of phosphonate metabolis	99.24
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.24
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.24
PRK15453	290	phosphoribulokinase; Provisional	99.21
PRK07429	327	phosphoribulokinase; Provisional	99.2
COG1660	286	Predicted P-loop-containing kinase [General functi	99.19
KOG3308	225	consensus Uncharacterized protein of the uridine k	99.19
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.17
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.17
PLN02772	398	guanylate kinase	99.17
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	99.1
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.03
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	99.0
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	99.0
PLN02318	656	phosphoribulokinase/uridine kinase	98.99
PHA00729	226	NTP-binding motif containing protein	98.95
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	98.9
PHA03136	378	thymidine kinase; Provisional	98.86
PLN02165	334	adenylate isopentenyltransferase	98.85
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.84
KOG3062	281	consensus RNA polymerase II elongator associated p	98.79
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.79
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.69
PRK06761	282	hypothetical protein; Provisional	98.67
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.63
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.63
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.59
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.57
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	98.56
PHA03135	343	thymidine kinase; Provisional	98.54
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.54
PHA03134	340	thymidine kinase; Provisional	98.54
PHA03138	340	thymidine kinase; Provisional	98.51
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.5
KOG4622	291	consensus Predicted nucleotide kinase [General fun	98.5
PLN02840	421	tRNA dimethylallyltransferase	98.49
PF00004	132	AAA: ATPase family associated with various cellula	98.48
PF13173	128	AAA_14: AAA domain	98.46
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	98.44
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.42
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.42
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.38
PF05729	166	NACHT: NACHT domain	98.34
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.34
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.29
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.29
CHL00181	287	cbbX CbbX; Provisional	98.26
PLN02748	468	tRNA dimethylallyltransferase	98.26
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.25
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	98.24
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.24
PRK09087	226	hypothetical protein; Validated	98.24
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.22
PRK14974	336	cell division protein FtsY; Provisional	98.22
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.22
smart00382	148	AAA ATPases associated with a variety of cellular	98.22
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.22
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.22
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.21
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.2
CHL00195	489	ycf46 Ycf46; Provisional	98.2
TIGR01223	182	Pmev_kin_anim phosphomevalonate kinase, animal typ	98.19
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.18
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.18
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.17
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.17
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	98.17
PLN02796	347	D-glycerate 3-kinase	98.16
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.16
TIGR00959	428	ffh signal recognition particle protein. This mode	98.16
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.15
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	98.14
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.12
PRK10867	433	signal recognition particle protein; Provisional	98.12
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.11
PLN03046	460	D-glycerate 3-kinase; Provisional	98.1
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.1
PRK09169	2316	hypothetical protein; Validated	98.09
PRK06620	214	hypothetical protein; Validated	98.09
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.09
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.07
KOG0707	231	consensus Guanylate kinase [Nucleotide transport a	98.07
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.07
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.05
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.04
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.04
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	98.03
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.03
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.03
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.02
PRK12377	248	putative replication protein; Provisional	98.02
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	98.02
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.01
PF13245	76	AAA_19: Part of AAA domain	98.01
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.0
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.0
PHA03133	368	thymidine kinase; Provisional	97.99
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.99
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.99
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.97
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.96
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.96
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.96
PF07726	131	AAA_3: ATPase family associated with various cellu	97.95
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.95
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.95
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.95
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.94
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.94
PRK12402	337	replication factor C small subunit 2; Reviewed	97.93
PRK04328	249	hypothetical protein; Provisional	97.93
PRK06067	234	flagellar accessory protein FlaH; Validated	97.93
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.92
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.92
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.92
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.92
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.91
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.91
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.91
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.91
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.89
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.89
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.89
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.89
COG1855	604	ATPase (PilT family) [General function prediction	97.88
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.88
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.88
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	97.88
CHL00176	638	ftsH cell division protein; Validated	97.88
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.87
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	97.86
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.86
COG3911	183	Predicted ATPase [General function prediction only	97.86
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	97.86
COG4240	300	Predicted kinase [General function prediction only	97.85
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.85
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.85
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.85
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.84
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	97.84
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.84
PRK08116	268	hypothetical protein; Validated	97.84
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	97.84
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.83
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.83
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.83
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.83
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.83
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.83
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.82
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.82
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.82
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.82
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.81
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.81
PRK04195	482	replication factor C large subunit; Provisional	97.81
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.81
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.81
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.8
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.8
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.8
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.8
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.8
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.79
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	97.79
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.79
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.79
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.78
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.78
PHA02244	383	ATPase-like protein	97.78
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	97.77
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.77
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.77
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.77
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.77
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.76
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.76
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.76
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.76
PRK10416	318	signal recognition particle-docking protein FtsY;	97.76
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.75
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.74
PRK08903	227	DnaA regulatory inactivator Hda; Validated	97.74
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.74
PRK13342	413	recombination factor protein RarA; Reviewed	97.74
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.73
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	97.73
PRK05973	237	replicative DNA helicase; Provisional	97.73
PRK12422	445	chromosomal replication initiation protein; Provis	97.71
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	97.71
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.71
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.71
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.71
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.71
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.7
PRK09354	349	recA recombinase A; Provisional	97.7
PRK13695	174	putative NTPase; Provisional	97.69
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.69
KOG0234	438	consensus Fructose-6-phosphate 2-kinase/fructose-2	97.69
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	97.69
PRK15455	644	PrkA family serine protein kinase; Provisional	97.69
PRK08084	235	DNA replication initiation factor; Provisional	97.68
PRK06893	229	DNA replication initiation factor; Validated	97.68
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.68
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.68
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.68
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.68
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.67
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.67
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.66
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	97.66
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.66
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.66
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.66
PF00693	281	Herpes_TK: Thymidine kinase from herpesvirus; Inte	97.66
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.65
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.65
PRK06835	329	DNA replication protein DnaC; Validated	97.65
PHA02624	647	large T antigen; Provisional	97.64
cd03116	159	MobB Molybdenum is an essential trace element in t	97.64
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.64
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.64
PRK06526	254	transposase; Provisional	97.64
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.64
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.64
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.63
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.62
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.62
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.62
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	97.61
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.6
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.6
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.6
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	97.6
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.6
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.6
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.59
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.58
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.58
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.58
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.58
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.57
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.57
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.57
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.57
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.56
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.56
PLN03025	319	replication factor C subunit; Provisional	97.56
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.56
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.56
PHA02544	316	44 clamp loader, small subunit; Provisional	97.55
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.55
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.55
PRK13768	253	GTPase; Provisional	97.55
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.54
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.54
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.54
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.54
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.54
PRK09183	259	transposase/IS protein; Provisional	97.54
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.54
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.53
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.53
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.53
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.53
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.53
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.53
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.53
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.53
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.53
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.53
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.52
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.52
COG2326	270	Uncharacterized conserved protein [Function unknow	97.52
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.52
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.52
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.52
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.52
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.52
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.51
PRK09302	509	circadian clock protein KaiC; Reviewed	97.51
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.51
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.51
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.51
PRK08181	269	transposase; Validated	97.51
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.51
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.51
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.51
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.51
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.51
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.5
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.5
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.5
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	97.5
PRK13851	344	type IV secretion system protein VirB11; Provision	97.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.5
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.5
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.5
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.49
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.49
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.49
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.49
PRK07952	244	DNA replication protein DnaC; Validated	97.49
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.49
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.49
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.48
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.48
PRK04296	190	thymidine kinase; Provisional	97.48
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.48
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.48
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.47
cd03246	173	ABCC_Protease_Secretion This family represents the	97.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.47
PRK13764	602	ATPase; Provisional	97.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.47
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.46
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.46
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.46
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.46
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.46
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.46
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.46
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.46
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.46
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.45
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.45
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.45
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.45
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.45
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.45
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.45
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.45
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.45
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.45
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.44
COG0714	329	MoxR-like ATPases [General function prediction onl	97.44
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.44
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.44
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.44
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.44
PRK06851	367	hypothetical protein; Provisional	97.44
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.44
PRK10908	222	cell division protein FtsE; Provisional	97.44
PRK10865	857	protein disaggregation chaperone; Provisional	97.44
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.44
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.44

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=4.9e-35  Score=200.95  Aligned_cols=185  Identities=55%  Similarity=1.003  Sum_probs=172.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ...+|++|+|.|+|||||-|+|..++++|+|.++|.+|++|..... +++.+..+.+.+..|..+|.+...+++++++..
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999999999999988 999999999999999999999999999999998


Q ss_pred             cCC-CeEEEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           96 SGN-DKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        96 ~~~-~~~i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      ... .+++|||||++..+...|.+ ... .+++++|++|+.+++.+|+..|  .+.|.++..+.+.+|+..|.+...|+.
T Consensus        84 ~~~~~~fLIDGyPR~~~q~~~fe~-~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi  162 (195)
T KOG3079|consen   84 SGDSNGFLIDGYPRNVDQLVEFER-KIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI  162 (195)
T ss_pred             cCCCCeEEecCCCCChHHHHHHHH-HhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence            664 55999999999999999999 555 6999999999999999999999  334899999999999999999999999


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ++|+..+.+..+|++.++++++..+.+.+..
T Consensus       163 ~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  163 EYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence            9999999999999999999999999887754

>PLN02674 adenylate kinase

Probab=100.00  E-value=2.5e-33  Score=206.43  Aligned_cols=183  Identities=30%  Similarity=0.574  Sum_probs=167.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +..++.|+|.|+|||||||+|+.|++++|+.+++.+++++..+..++..+..+.+++..|..+|+++...++.+.+....
T Consensus        28 ~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~  107 (244)
T PLN02674         28 SKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPS  107 (244)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcC
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999997654


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC-----------------------
Q 028388           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ-----------------------  146 (209)
Q Consensus        98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r----~~-----------------------  146 (209)
                       ..+||+||||++..+...|..+   ....++.+|+|++|.+++.+|+..|    ..                       
T Consensus       108 ~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~  187 (244)
T PLN02674        108 CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP  187 (244)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence             6899999999999999987763   3468999999999999999999998    11                       


Q ss_pred             --CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                        .|.++..+.+.+|+..|++...++.++|...+.++.+|++.+++++++.|...+
T Consensus       188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        188 LIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             cccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence              277889999999999999999999999999999999999999999999998876

>PLN02459 probable adenylate kinase

Probab=100.00  E-value=4.7e-33  Score=205.73  Aligned_cols=194  Identities=29%  Similarity=0.558  Sum_probs=175.5

Q ss_pred             CcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH
Q 028388            7 TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI   86 (209)
Q Consensus         7 ~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
                      +-.+.+..++...+++.|+|.|+|||||||+|+.|++.+|+.+++.++++++.+..++..+..+..++..|..+|++++.
T Consensus        15 ~~~~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~   94 (261)
T PLN02459         15 DLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIF   94 (261)
T ss_pred             hccccccCCccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHH
Confidence            34455666776778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----C-------------
Q 028388           87 KLLQKAMEES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----Q-------------  146 (209)
Q Consensus        87 ~~i~~~~~~~---~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~----~-------------  146 (209)
                      .++.+.+...   ...+||+||||++..|...|.. . ..++.+|+|+++.+++.+|+..|.    .             
T Consensus        95 ~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~-~-~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~  172 (261)
T PLN02459         95 SLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEG-V-TDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKG  172 (261)
T ss_pred             HHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHh-c-CCCCEEEEEECCHHHHHHHhhccccccccCcccccccccccc
Confidence            9999999763   3689999999999999999987 3 468999999999999999999981    0             


Q ss_pred             -----------------------CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          147 -----------------------GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       147 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                                             .|.++.++.+.+|+..|.+...|+.++|...+.++.+|++.++++++++|.+.|..
T Consensus       173 ~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        173 EDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             ccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence                                   46788899999999999999999999999999999999999999999999999865

>PRK14531 adenylate kinase; Provisional

Probab=100.00  E-value=1.5e-32  Score=197.18  Aligned_cols=177  Identities=31%  Similarity=0.617  Sum_probs=161.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|+|+|||||||+++.|++++|+.+++.+++++..+..++..+.....++..+..+++++...++...+......++
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~   82 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW   82 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence            46999999999999999999999999999999999999888888888888888899999999999999988876556789


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      |+||||++..+...+...   ....++.+|+|++|++++.+|+..|  ++.++..+.+.+|+..|++...|+.++|...+
T Consensus        83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R--~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~  160 (183)
T PRK14531         83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLAR--GRADDNEAVIRNRLEVYREKTAPLIDHYRQRG  160 (183)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998877663   3456788999999999999999999  88889999999999999999999999999888


Q ss_pred             cEEEEcCCCChHHHHHHHHHhc
Q 028388          179 KVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       179 ~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .++.+|++.+++++++.|.+.|
T Consensus       161 ~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        161 LLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            8999999999999999998775

>PLN02200 adenylate kinase family protein

Probab=100.00  E-value=1.6e-32  Score=203.09  Aligned_cols=190  Identities=63%  Similarity=1.034  Sum_probs=169.3

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      .++.+..|++|+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+..+...+..+..++++....++...+
T Consensus        36 ~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l  115 (234)
T PLN02200         36 SSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEM  115 (234)
T ss_pred             CCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence            35556678999999999999999999999999999999999999998888888888888888899999999889888888


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                      ......++|+||||+...+...|.......|+++|+|+++++++.+|+..|..++.++..+.+.+++..|.+...++.++
T Consensus       116 ~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~  195 (234)
T PLN02200        116 ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDY  195 (234)
T ss_pred             hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            76556789999999999998888774445799999999999999999999844567788899999999999999999999


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      |...+.++.+|++.+++++++.|.+.+...
T Consensus       196 y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~  225 (234)
T PLN02200        196 YSKKGKLYTINAVGTVDEIFEQVRPIFAAC  225 (234)
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            988888999999999999999999988663

>PRK14527 adenylate kinase; Provisional

Probab=100.00  E-value=5.2e-32  Score=195.84  Aligned_cols=184  Identities=34%  Similarity=0.652  Sum_probs=165.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      ..++|++|+|.|+|||||||+|+.|++++|+.+++.|++++.....++..+.....++..+...+++.+..++.+.+...
T Consensus         2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          2 TQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            45678999999999999999999999999999999999999988878888888888888899999999999999988865


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      ...++|+||||++..+...+..+   ....++.+|+|++|++++.+|+.+|  ..+|.++..+.+.+|+..|.+...++.
T Consensus        82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~  161 (191)
T PRK14527         82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV  161 (191)
T ss_pred             CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence            55689999999999998777653   3457888999999999999999999  456888889999999999999999999


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .+|.+.+.++.||++.++++++++|...|
T Consensus       162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        162 DYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence            99999889999999999999999998775

>PRK13808 adenylate kinase; Provisional

Probab=100.00  E-value=6.2e-32  Score=206.35  Aligned_cols=181  Identities=30%  Similarity=0.592  Sum_probs=163.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  101 (209)
                      .|+|.|+|||||||+++.|++.||+.+++.|++++..+..++..+....+++..+..+|++++..++.+.+.... ..+|
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~   81 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGF   81 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            589999999999999999999999999999999999988889999999999999999999999999999887644 5789


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-c-------CCCCCCcHHHHHHHHHHHHhhchhH
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-N-------QGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~-------~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      |+||||++.+|...|..+   ....||++|+|++|++++++|+..| .       ..|.++..+.+.+|+..|++...++
T Consensus        82 ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PL  161 (333)
T PRK13808         82 ILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPL  161 (333)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHH
Confidence            999999999999887653   4468999999999999999999987 1       1366778999999999999999999


Q ss_pred             HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .++|.+.+.++.||++.+++++++.|...|...
T Consensus       162 l~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~  194 (333)
T PRK13808        162 VHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV  194 (333)
T ss_pred             HHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence            999998888999999999999999999888653

>PRK14528 adenylate kinase; Provisional

Probab=100.00  E-value=2e-31  Score=191.51  Aligned_cols=178  Identities=29%  Similarity=0.589  Sum_probs=162.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|.|+|||||||+|+.|++.+|+++++.+++++..+..++..+.....++..+...+++....++.+.+.... ..+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            4589999999999999999999999999999999999988888888888999999999999998888988887643 578


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      +|+||||++..+...+..+   ....++.+|+|++|++++.+|+..|  ..++.++..+.+.+|+..|+....|+.++|.
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~  161 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA  161 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999999999988764   2457999999999999999999999  5678889999999999999999999999999


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHh
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAV  199 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~  199 (209)
                      ..+.++.+|++.++++++..|.+.
T Consensus       162 ~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        162 AQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHh
Confidence            999999999999999999988764

>PRK14532 adenylate kinase; Provisional

Probab=100.00  E-value=1.8e-31  Score=192.72  Aligned_cols=179  Identities=31%  Similarity=0.602  Sum_probs=160.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  101 (209)
                      .|+|.|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+...+..+..++++.+..++...+.... +.++
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            589999999999999999999999999999999999988888888888888888999999999999998886543 7899


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      |+||||++..+...+..+   ....|+.+|+|++|++++.+|+..|  ..+++++..+.+.+++..|+....++.++|.+
T Consensus        82 vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~  161 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAG  161 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999887643   4567999999999999999999998  34678888899999999999999999899988


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .+.++.+|++.++++++++|.+.|.
T Consensus       162 ~~~~~~id~~~~~eev~~~I~~~l~  186 (188)
T PRK14532        162 QGKLTEVDGMGSIEAVAASIDAALE  186 (188)
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHh
Confidence            8888999999999999999998875

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=100.00  E-value=2e-31  Score=191.77  Aligned_cols=178  Identities=66%  Similarity=1.105  Sum_probs=158.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      +|+|.|+|||||||+|+.|++++|+.+++.++++++.+..++..+.....++..+..++++....++...+....+.++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            48999999999999999999999999999999999998877888888888899999999999999999888765578899


Q ss_pred             EeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          103 IDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      +||||++..+...|..+  ....|+++|+|++|++++.+|+..|  ..++.++..+.+.+++..|.+...++.++|...+
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999988877764  3357999999999999999999999  2255667888999999999999999999998877


Q ss_pred             cEEEEcCCCChHHHHHHHHHhc
Q 028388          179 KVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       179 ~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .++.||++.+++++.++|.+.+
T Consensus       161 ~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       161 KVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            8899999999999999998765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14529 adenylate kinase; Provisional

Probab=100.00  E-value=3.7e-31  Score=192.88  Aligned_cols=178  Identities=26%  Similarity=0.551  Sum_probs=158.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      .|+|.|+|||||||+++.|++++++.+++.++++++.+..++..+..+++++..+..+|+++...++.+.+......++|
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~i   81 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWL   81 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEE
Confidence            58999999999999999999999999999999999998888999999999999999999999999999999876678999


Q ss_pred             EeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc---cC----------------------------CC
Q 028388          103 IDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR---NQ----------------------------GR  148 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r---~~----------------------------~~  148 (209)
                      +||||++..|...|...   ....|+.+|+|++|.+++.+|+..|   ..                            .|
T Consensus        82 LDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R  161 (223)
T PRK14529         82 LDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTR  161 (223)
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccccC
Confidence            99999999999987753   3467999999999999999999998   10                            26


Q ss_pred             CCCc-HHHHHHHHHHHHhh---chhHHHHHhh-----cCcEEEEcCCCChHHHHHHHHHhc
Q 028388          149 EDDN-VETIRKRFKVFLES---SLPVVQYYEA-----KGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       149 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .+|. ++.+.+|+..|++.   ..++.++|..     .+.++.+|++++++++++.|.+.+
T Consensus       162 ~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        162 ADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            6674 68999999999987   4467789985     678999999999999999998775

>TIGR01351 adk adenylate kinases

Probab=100.00  E-value=8.4e-31  Score=192.15  Aligned_cols=176  Identities=36%  Similarity=0.695  Sum_probs=160.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKF  101 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~  101 (209)
                      |+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+......+..+...+++++..++.+.+....  ..++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            78999999999999999999999999999999999988888889999999999999999999999999998632  6799


Q ss_pred             EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhcc-C----------------------------CCCCC
Q 028388          102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRN-Q----------------------------GREDD  151 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r~-~----------------------------~~~~~  151 (209)
                      |+||||++..+...|.. ... .++.+|+|++|.+++.+|+..|. .                            .|.++
T Consensus        82 ilDGfPrt~~Qa~~l~~-~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD  160 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDA-LLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDD  160 (210)
T ss_pred             EEeCCCCCHHHHHHHHH-HhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCC
Confidence            99999999999998887 444 68999999999999999999981 0                            26778


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ..+.+.+|+..|++...++.++|...+.++.+|++.+++++++.|.+.|
T Consensus       161 ~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  209 (210)
T TIGR01351       161 TEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL  209 (210)
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence            8999999999999999999999999889999999999999999998876

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14526 adenylate kinase; Provisional

Probab=99.98  E-value=2.8e-30  Score=187.95  Aligned_cols=179  Identities=30%  Similarity=0.564  Sum_probs=161.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKF  101 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~  101 (209)
                      .|+|.|+|||||||+++.|++.+++.+++.|+++++.+..++..+..+..++..+...|++...+++.+.+.... ..++
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            488999999999999999999999999999999999988888899999999999999999999999999997643 6789


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CCCCCCc
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QGREDDN  152 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~----------------------------~~~~~~~  152 (209)
                      |+||||++..+...|.. ... ...+|+|.+|++++.+|+..| .                            .+|.++.
T Consensus        82 ilDGfPR~~~Qa~~l~~-~~~-~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         82 ILDGFPRNINQAKALDK-FLP-NIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             EEECCCCCHHHHHHHHH-hcC-CCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            99999999999999887 322 246888999999999999998 1                            1478889


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .+.+.+|+..|++...|+.++|...+.++.+|++.++++++++|.+.|.++
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~~  210 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISKK  210 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHccc
Confidence            999999999999999999999999889999999999999999999998764

>PRK02496 adk adenylate kinase; Provisional

Probab=99.98  E-value=8.1e-30  Score=183.48  Aligned_cols=178  Identities=33%  Similarity=0.633  Sum_probs=159.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|.|+|||||||+++.|++.+|+.+++.|++++..+..++..+.....++..+...+++....++.+.+.... ..+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            5689999999999999999999999999999999999988888888888888989999999999999999887543 568


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      +|+||||++..+...+..+   ....|+++|+|++|++++.+|+..|  ++.++..+.+.+++..|.+...++.++|...
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R--~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~  159 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLAR--GRKDDTEEVIRRRLEVYREQTAPLIDYYRDR  159 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999887776653   2346899999999999999999999  7778888999999999999999999999888


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcC
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      +.++.+|++.+++++.++|.+.|.
T Consensus       160 ~~~~~Ida~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        160 QKLLTIDGNQSVEAVTTELKAALA  183 (184)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC
Confidence            889999999999999999998874

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.98  E-value=4e-30  Score=189.21  Aligned_cols=181  Identities=36%  Similarity=0.696  Sum_probs=162.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|.|+|||||||+|+.|++++|+.+++.++++++.+...+..+..+...+..+..++++....++.+.+.... ..+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            3599999999999999999999999999999999999988888888989999999999999999999999987644 458


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~  148 (209)
                      +|+||||++..+...+.+.   ....++.+|+|++|.+++.+|+..|.                             ..|
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r  160 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR  160 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence            9999999999998888542   34578899999999999999999981                             145


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++..+.+.+|+..|+.+..++.++|...+.++.+|++.+++++++.|.+.|..
T Consensus       161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (215)
T PRK00279        161 ADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK  214 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            778899999999999999999999999988899999999999999999988764

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.97  E-value=2.2e-29  Score=185.23  Aligned_cols=180  Identities=23%  Similarity=0.487  Sum_probs=160.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--   95 (209)
                      ...|+.|+|.|+|||||||+|+.|++.+|+++++.|+++++.+...+..+..+.+++..+...+++++..++.+.+..  
T Consensus         3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~   82 (229)
T PTZ00088          3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVT   82 (229)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhc
Confidence            345778999999999999999999999999999999999999888888999999999999999999999999999976  


Q ss_pred             c-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------
Q 028388           96 S-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------  145 (209)
Q Consensus        96 ~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------  145 (209)
                      . ...++|+||||++..+...+.. . ..|+++|+|+++.+++.+|+..|.                             
T Consensus        83 ~~~~~g~iLDGfPRt~~Qa~~l~~-~-~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~  160 (229)
T PTZ00088         83 DDCFKGFILDGFPRNLKQCKELGK-I-TNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPAD  160 (229)
T ss_pred             cccCceEEEecCCCCHHHHHHHHh-c-CCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCc
Confidence            2 2688999999999999988876 3 579999999999999999999871                             


Q ss_pred             ----------CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc-EEEE---cCCCChHHHHHHHHHh
Q 028388          146 ----------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK-VRKI---DAAKPVAEVFDAVKAV  199 (209)
Q Consensus       146 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i---d~~~~~ee~~~~i~~~  199 (209)
                                ..|.++.++.+.+|+..|++...++.++|...+. ++.+   |++.+++++++.|.+.
T Consensus       161 c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~  228 (229)
T PTZ00088        161 CEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR  228 (229)
T ss_pred             ccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence                      0366778899999999999999999999999987 8777   7889999999888754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.97  E-value=1.5e-28  Score=177.58  Aligned_cols=181  Identities=48%  Similarity=0.883  Sum_probs=155.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~   97 (209)
                      +.++|+|.|+|||||||+|+.|++.+|+.+++.|++++..+......+..+...+..+...+...+...+...+...  .
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence            35689999999999999999999999999999999999887666666777777777788888888777777776542  3


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      +.++|+||||+...+...+.. ....|+++|+|++|++++.+|+.+|  ...+.++..+.+.+++..|++...++.++|.
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~-~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~  160 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFER-RIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE  160 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence            789999999999988888876 5667999999999999999999988  2457777888999999999999889888888


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      ..+.++.+|++.+++++.+.|...+.
T Consensus       161 ~~~~~~~id~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       161 TKGKLRKINAEGTVDDVFLQVCTAID  186 (188)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHh
Confidence            77788899999999999999998875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14530 adenylate kinase; Provisional

Probab=99.97  E-value=4.4e-28  Score=178.39  Aligned_cols=176  Identities=35%  Similarity=0.652  Sum_probs=150.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH-----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      .|+|.|+|||||||+++.|++++|+.+++.+++++...     ..+..++. ....+..+...+++....++...+..  
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~--   81 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD--   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc--
Confidence            68999999999999999999999999999999999875     22334443 45567788889999888888888753  


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c----------------------------CCC
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N----------------------------QGR  148 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~----------------------------~~~  148 (209)
                      ..++|+||||++..+...+..  ...++++|+|++|.+++.+|+.+| .                            ..|
T Consensus        82 ~~~~IldG~pr~~~q~~~l~~--~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R  159 (215)
T PRK14530         82 ADGFVLDGYPRNLEQAEYLES--ITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQR  159 (215)
T ss_pred             CCCEEEcCCCCCHHHHHHHHH--hcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCC
Confidence            468999999999999888775  246899999999999999999987 1                            135


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .++..+.+.+|+..|.+...++.++|...+.++.+|++.+++++++.|.+.|.+.
T Consensus       160 ~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~  214 (215)
T PRK14530        160 DDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA  214 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence            6678899999999999999999999998888999999999999999999988653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.96  E-value=9.4e-28  Score=174.28  Aligned_cols=167  Identities=41%  Similarity=0.762  Sum_probs=149.8

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFL  102 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i  102 (209)
                      |+|+|+|||||||+|+.|++++|+.+++.++++++.+......+..+...+..+...+++.+..++...+... .+.++|
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v   81 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI   81 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence            8999999999999999999999999999999999998888888888888888888899999999999988754 267899


Q ss_pred             EeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCHHHHHHHHhhcc---------------------CCCCCCcHHHHHH
Q 028388          103 IDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSEEEMERRILNRN---------------------QGREDDNVETIRK  158 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~~~~~~R~~~r~---------------------~~~~~~~~~~~~~  158 (209)
                      +||||++..+...|.. ...   .++++|+|++|++++.+|+..|.                     ..+.++..+.+.+
T Consensus        82 ldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i~~  160 (194)
T cd01428          82 LDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKK  160 (194)
T ss_pred             EeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHHHH
Confidence            9999999999998888 443   78999999999999999999992                     1366788899999


Q ss_pred             HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHH
Q 028388          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE  191 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee  191 (209)
                      |+..|.+...++.++|...+.++.+|++.++++
T Consensus       161 R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~  193 (194)
T cd01428         161 RLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE  193 (194)
T ss_pred             HHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence            999999999999999999899999999888765

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=9.1e-27  Score=164.99  Aligned_cols=172  Identities=34%  Similarity=0.657  Sum_probs=157.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|.|+|||||||+|+.|+++++++++|.+++++..+...++.+.....++..+..++++....++...+.... ..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999998765 237


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      +|+||||+...+...+.+.   .....+.++.++++.+.+..|+..|  . |.++..+.+.+|+..|.+...|+..+|. 
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r--~~r~dd~~~~~~~R~~~y~~~~~pli~~y~-  157 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGR--RVREDDNEETVKKRLKVYHEQTAPLIEYYS-  157 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCc--cccccCCHHHHHHHHHHHHhcccchhhhhe-
Confidence            9999999999999988875   2468899999999999999999998  4 7889999999999999999999988887 


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                          +.+|+..+++++.+.+.+.+
T Consensus       158 ----~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         158 ----VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             ----eeccCCCCHHHHHHHHHHhh
Confidence                78999999999999988765

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.96  E-value=4.3e-27  Score=164.04  Aligned_cols=146  Identities=44%  Similarity=0.850  Sum_probs=130.1

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CCCeEEEe
Q 028388           26 VLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GNDKFLID  104 (209)
Q Consensus        26 i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~d  104 (209)
                      |.|+|||||||+|+.|++++|+.+|+.++++++.+...+..+..+.+++..+..+|++++..++...+... ...++|+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999876 58999999


Q ss_pred             CCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          105 GFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       105 g~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      |||++..+...|.+.   ....|+.+|+|++|.+++.+|+..       +..+.+.+|+..|+++..++.++|.+.+
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~-------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g  150 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ-------DNEEVIKKRLEEYRENTEPILDYYKEQG  150 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT-------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999988762   467889999999999999999984       6778999999999999999999998765

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PLN02842 nucleotide kinase

Probab=99.95  E-value=9.5e-27  Score=185.97  Aligned_cols=179  Identities=30%  Similarity=0.642  Sum_probs=159.2

Q ss_pred             EEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CCeEE
Q 028388           25 FVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--NDKFL  102 (209)
Q Consensus        25 ~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~i  102 (209)
                      +|.|+|||||||+|+.|++++++.+++.+++++..+..++..+..+++++..+...+++.+..++.+.+....  ..++|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            4899999999999999999999999999999999988899999999999999999999999999999987542  56799


Q ss_pred             EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c------------------------CCCCCCcHHHHH
Q 028388          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N------------------------QGREDDNVETIR  157 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~------------------------~~~~~~~~~~~~  157 (209)
                      +||||++..+...+.. ....|+++|+|++|++++.+|+.+| .                        ..|.++..+.+.
T Consensus        81 LDGfPRt~~Qa~~Le~-~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik  159 (505)
T PLN02842         81 LDGYPRSFAQAQSLEK-LKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK  159 (505)
T ss_pred             EeCCCCcHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence            9999999999888887 6678999999999999999999887 1                        146688899999


Q ss_pred             HHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhh
Q 028388          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (209)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~  206 (209)
                      +|+..|++...++..+|..  .++.+|++.++++++++|.+.|......
T Consensus       160 kRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L~~  206 (505)
T PLN02842        160 ARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQKD  206 (505)
T ss_pred             HHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999888863  5788999999999999999988765543

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=99.92  E-value=4.4e-23  Score=149.02  Aligned_cols=183  Identities=39%  Similarity=0.659  Sum_probs=165.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN   98 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~   98 (209)
                      ++..+++.|+|||||+|+|..|++.++..+++++|++++.+...++.+....+++..+...+++++..++...+... -+
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            67889999999999999999999999999999999999999999999999999999999999999988777777765 37


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----c-------------------------CCCC
Q 028388           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----N-------------------------QGRE  149 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r----~-------------------------~~~~  149 (209)
                      .++++||||++..+...+.+ ....++.+|.|++|.+.+.+|+..|    .                         ..|.
T Consensus        94 ~~~ildg~Prt~~qa~~l~~-~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~  172 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLD-RIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE  172 (235)
T ss_pred             cccccCCCCcchHHHHHHHH-ccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence            99999999999998888887 7889999999999999999999998    1                         1456


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +|.++.+..|+..|++...++.++|...+.+..+++.. .++++..+...+....
T Consensus       173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~  226 (235)
T KOG3078|consen  173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKV  226 (235)
T ss_pred             cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhh
Confidence            78889999999999999999999999999888888876 8999999998887654

>PRK01184 hypothetical protein; Provisional

Probab=99.86  E-value=1.9e-19  Score=129.56  Aligned_cols=170  Identities=24%  Similarity=0.338  Sum_probs=112.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ++|+|+|+|||||||+++ +++++|+++++.||++++.+.. +..     ++........   .+.......++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence            589999999999999987 7789999999999999998643 211     2332222221   12223333444445554


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhhchhHHHH
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                      ..+..||+||+ +...+...+.. ....+..+|+++||++++.+|+..|  ++..+  ..+.+.++......  .+..+.
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~-~~~~~~~~i~v~~~~~~~~~Rl~~R--~~~~d~~~~~~~~~r~~~q~~--~~~~~~  151 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRK-EFPEDFILIAIHAPPEVRFERLKKR--GRSDDPKSWEELEERDERELS--WGIGEV  151 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHH-hCCcccEEEEEECCHHHHHHHHHHc--CCCCChhhHHHHHHHHHHHhc--cCHHHH
Confidence            45788999998 67777777766 3334668999999999999999988  54432  34555555433211  112223


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +. ..+ ++++++.+.+++.+++.+++...
T Consensus       152 ~~-~ad-~vI~N~~~~~~l~~~v~~~~~~~  179 (184)
T PRK01184        152 IA-LAD-YMIVNDSTLEEFRARVRKLLERI  179 (184)
T ss_pred             HH-hcC-EEEeCCCCHHHHHHHHHHHHHHH
Confidence            32 233 45556669999999999887643

>PRK13973 thymidylate kinase; Provisional

Probab=99.85  E-value=2.9e-19  Score=131.19  Aligned_cols=178  Identities=22%  Similarity=0.302  Sum_probs=109.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecH--------hHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSA--------GDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTI   86 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
                      ++++|+|+|++||||||+++.|++.|   |..++..        +..+++.+...  ..........+...  ...+.+.
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~   79 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE   79 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence            36899999999999999999999999   7766654        56666654431  11111111111111  0112223


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-C---CC
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-Q---GR  148 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~-~---~~  148 (209)
                      ..+..++.  .+..||+|+|..+            ..+...+...  ....||++|||++|++++.+|+.+|. .   .+
T Consensus        80 ~~i~~~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~  157 (213)
T PRK13973         80 EVIRPALA--RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR  157 (213)
T ss_pred             HHHHHHHH--CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence            33444444  4788999987522            1233333321  34679999999999999999999881 1   12


Q ss_pred             CCC-cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388          149 EDD-NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA  207 (209)
Q Consensus       149 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~  207 (209)
                      .+. ..+.+.+....|.+.    .+.+  ...+.+||++.+++++.++|.+.+.....+|
T Consensus       158 ~e~~~~~~~~~~~~~y~~l----~~~~--~~~~~~Ida~~~~e~V~~~I~~~i~~~~~~~  211 (213)
T PRK13973        158 FEKEDLAFHEKRREAFLQI----AAQE--PERCVVIDATASPEAVAAEIWAAVDQRLLEA  211 (213)
T ss_pred             hhhchHHHHHHHHHHHHHH----HHhC--CCcEEEEcCCCCHHHHHHHHHHHHHHHHhhc
Confidence            221 223333333333331    1211  2357889999999999999999987755543

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=99.82  E-value=4.6e-18  Score=122.93  Aligned_cols=175  Identities=21%  Similarity=0.321  Sum_probs=109.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCchHHHHHHHHHcC-CCCCH-HHH-------HH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEG-KIVPS-EVT-------IK   87 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~-------~~   87 (209)
                      ++++|+|+|+.||||||+++.|++.+...   ++-.    ++  +.++..+..+++.+.++ ..... ...       .+
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~t----rE--P~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~   75 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLT----RE--PGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQ   75 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----eC--CCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999433   3322    11  44566777777777654 22222 211       23


Q ss_pred             HHHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           88 LLQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        88 ~i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                      .+.+.+..  ..+..||+|.|..+.            .+...+.+.  ....||+++||++|+++..+|+.+|  +...+
T Consensus        76 h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r--~~~~~  153 (208)
T COG0125          76 HLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKR--GELRD  153 (208)
T ss_pred             HHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhc--CCccc
Confidence            33333332  237899999876542            333333332  3348999999999999999999998  32211


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcC--cEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      ..+...   ..+++.++..+..+....  .++++|++.+++++.+.|.+.+.....
T Consensus       154 r~E~~~---~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~  206 (208)
T COG0125         154 RFEKED---DEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG  206 (208)
T ss_pred             hhhhHH---HHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence            111111   122222222222222222  589999999999999999988876543

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.81  E-value=1.4e-17  Score=112.86  Aligned_cols=166  Identities=19%  Similarity=0.247  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|.|.|+|||||||+|+.|++++|+++++.|.+++++.....-.-..+..+-.....+..+.  .--+..+.  ....+
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~i--D~rq~e~a--~~~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEI--DRRQKELA--KEGNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHH--HHHHHHHH--HcCCe
Confidence            579999999999999999999999999999999999996653222233444433333222221  11222222  25789


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh-hcC--
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE-AKG--  178 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  178 (209)
                      |++|.-      ..|.-  ...+++.|||.+|.++..+|+.+|+..-..+.......|=.   ...+...+.|. ...  
T Consensus        77 VlegrL------A~Wi~--k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~---se~kRY~~~YgIDidDl  145 (179)
T COG1102          77 VLEGRL------AGWIV--REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREE---SEKKRYKKIYGIDIDDL  145 (179)
T ss_pred             EEhhhh------HHHHh--ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHhCCCCccc
Confidence            999752      23332  25689999999999999999999832222222222221111   11111122232 111  


Q ss_pred             --cEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          179 --KVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       179 --~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                        .-+++|+ .-+++++..-+...+..
T Consensus       146 SiyDLVinTs~~~~~~v~~il~~aid~  172 (179)
T COG1102         146 SIYDLVINTSKWDPEEVFLILLDAIDA  172 (179)
T ss_pred             eeeEEEEecccCCHHHHHHHHHHHHHh
Confidence              1145555 55888888887777654

>PRK13975 thymidylate kinase; Provisional

Probab=99.81  E-value=5.4e-18  Score=123.20  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----------HHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKLLQ   90 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~   90 (209)
                      +++|+|+|++||||||+++.|+++++..+...        +.+...+..+++++......+....          ...++
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~   73 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIE   73 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999998533211        0111223333333322111111000          11122


Q ss_pred             HHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHH
Q 028388           91 KAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKR  159 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~  159 (209)
                      ..+.   ...+|+|+|..+-           .+...+.. ....|+++|||++|++++.+|+..|  +++......+.++
T Consensus        74 ~~~~---~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~-~~~~pd~vi~L~~~~e~~~~Rl~~r--~~~~~~~~~~~~~  147 (196)
T PRK13975         74 EDLK---KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINR-YAKKPDLVFLLDVDIEEALKRMETR--DKEIFEKKEFLKK  147 (196)
T ss_pred             HHHc---CCEEEEECchhHHHHHhcccCCCHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHhcc--CccccchHHHHHH
Confidence            2222   3679999875431           11112222 3457999999999999999999988  4432333333333


Q ss_pred             HHHHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388          160 FKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~  204 (209)
                      +...+..... ...+.....++++|++ .+++++.++|.+.|....
T Consensus       148 ~~~~y~~~~~-~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~  192 (196)
T PRK13975        148 VQEKYLELAN-NEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI  192 (196)
T ss_pred             HHHHHHHHHh-hcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            3332222211 1112223357889984 799999999999886654

>PRK06762 hypothetical protein; Provisional

Probab=99.81  E-value=9.4e-18  Score=118.77  Aligned_cols=157  Identities=16%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      |++|+|+|+|||||||+|+.|++.+  ++.+++.|.+.... .....          .......+.+...+...+.  .+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-~~~~~----------~~~~~~~~~~~~~~~~~~~--~g   68 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-LRVKD----------GPGNLSIDLIEQLVRYGLG--HC   68 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-ccccC----------CCCCcCHHHHHHHHHHHHh--CC
Confidence            6899999999999999999999999  56677875544333 21100          0011222333333333333  46


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCC-CCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ..+|+|+..........+..+  ....+..+|||++|.+++.+|...|  ++ .....+.+..++...    ..+    .
T Consensus        69 ~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R--~~~~~~~~~~l~~~~~~~----~~~----~  138 (166)
T PRK06762         69 EFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTR--PKSHEFGEDDMRRWWNPH----DTL----G  138 (166)
T ss_pred             CEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcc--cccccCCHHHHHHHHhhc----CCc----C
Confidence            889999875444333334433  3334678999999999999999988  33 123445554443221    111    1


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                       ....++++++.++++++++|...+.
T Consensus       139 -~~~~~~~~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        139 -VIGETIFTDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             -CCCeEEecCCCCHHHHHHHHHHHhc
Confidence             1235667778899999999988763

>PRK04040 adenylate kinase; Provisional

Probab=99.81  E-value=2.4e-18  Score=123.54  Aligned_cols=172  Identities=15%  Similarity=0.227  Sum_probs=107.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCc--hHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSE--NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-   95 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-   95 (209)
                      |++|+|+|+|||||||+++.|++++  ++.+++.++++.........  .....+    .........+.......+.. 
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r----~l~~~~~~~~~~~a~~~i~~~   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMR----KLPPEEQKELQREAAERIAEM   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHh----hCChhhhHHHHHHHHHHHHHh
Confidence            5789999999999999999999999  89999999998877554321  112222    11111122223334444333 


Q ss_pred             cCCCeEEEeCCCCCHH--------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhh
Q 028388           96 SGNDKFLIDGFPRNEE--------NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~--------~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                      ..+..+|+||+..-..        ....+   ....|+.+|++.++++++.+|+... .++|..+..+.+..++......
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~---~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~  154 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEWVL---EELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAA  154 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHHHH---hhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHH
Confidence            2356699998642111        11222   3458999999999999998888853 2367777777777665443332


Q ss_pred             chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ... +..+......+++|.+..+++.++++.+.|
T Consensus       155 a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        155 AMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            111 111112223444555545999999998876

>PLN02924 thymidylate kinase

Probab=99.81  E-value=6.6e-18  Score=123.93  Aligned_cols=170  Identities=22%  Similarity=0.316  Sum_probs=102.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH-HH----------HH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE-VT----------IK   87 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~   87 (209)
                      +++++|+|+|++||||||+++.|++.++...+.. ..+++. ..++..+..+++++......... ..          ..
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep-~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~   91 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFP-DRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRS   91 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCC-CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999996443322 111111 11344555555555432222111 11          12


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028388           88 LLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~  156 (209)
                      .+..++.  .+..||+|.|..+-           ++...+.. ..+.||++|||++|++++.+|...+  +...+. ..+
T Consensus        92 ~I~pal~--~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~-~~~~PDlvi~Ld~~~~~a~~R~~~~--~~~~E~-~~~  165 (220)
T PLN02924         92 LMERKLK--SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEV-GLPAPDLVLYLDISPEEAAERGGYG--GERYEK-LEF  165 (220)
T ss_pred             HHHHHHH--CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccC--cccccc-HHH
Confidence            2333333  48899999987531           22222232 4568999999999999999996533  111111 222


Q ss_pred             HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+++.       ..+..+.. ..+.+||++.+++++.++|.+.+....
T Consensus       166 ~~rv~-------~~Y~~la~-~~~~vIDa~~sieeV~~~I~~~I~~~l  205 (220)
T PLN02924        166 QKKVA-------KRFQTLRD-SSWKIIDASQSIEEVEKKIREVVLDTV  205 (220)
T ss_pred             HHHHH-------HHHHHHhh-cCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            22222       22222222 357888999999999999988886543

>PRK03839 putative kinase; Provisional

Probab=99.80  E-value=2.7e-18  Score=123.11  Aligned_cols=151  Identities=19%  Similarity=0.345  Sum_probs=97.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCCCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~  100 (209)
                      +.|+|.|+|||||||+++.|++++++++++.|++++..  .   .+.....        ..+.....++..+.. ..+..
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~--~---~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~   67 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK--G---IGEEKDD--------EMEIDFDKLAYFIEEEFKEKN   67 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc--C---CcccCCh--------hhhcCHHHHHHHHHHhccCCC
Confidence            36999999999999999999999999999999987653  1   1110000        001112233333322 12567


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH-HHHHhhchhHHHHHhhcCc
Q 028388          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF-KVFLESSLPVVQYYEAKGK  179 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  179 (209)
                      +|+||+..           ....++++|||+++++++.+|+..|  +..  .. .+.... ..+.+  ....+.+.....
T Consensus        68 vIidG~~~-----------~l~~~~~vi~L~~~~~~~~~Rl~~R--~~~--~~-~~~~~~~~~~~~--~~~~~~~~~r~~  129 (180)
T PRK03839         68 VVLDGHLS-----------HLLPVDYVIVLRAHPKIIKERLKER--GYS--KK-KILENVEAELVD--VCLCEALEEKEK  129 (180)
T ss_pred             EEEEeccc-----------cccCCCEEEEEECCHHHHHHHHHHc--CCC--HH-HHHHHHHHHHHH--HHHHHHHHhcCC
Confidence            99999642           1235789999999999999999987  321  11 111111 11111  112244555667


Q ss_pred             EEEEcCC-CChHHHHHHHHHhcCcc
Q 028388          180 VRKIDAA-KPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       180 ~~~id~~-~~~ee~~~~i~~~i~~~  203 (209)
                      ++.+|++ .++++++++|.+.+...
T Consensus       130 ~~~Id~~~~s~eev~~~I~~~l~~~  154 (180)
T PRK03839        130 VIEVDTTGKTPEEVVEEILELIKSG  154 (180)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHhcC
Confidence            8899985 69999999999888654

>PRK13974 thymidylate kinase; Provisional

Probab=99.80  E-value=4.3e-18  Score=124.92  Aligned_cols=174  Identities=21%  Similarity=0.305  Sum_probs=115.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHHHcCCchHHHHHHHHHcC--CCCCHHHHH---------H
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEG--KIVPSEVTI---------K   87 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~   87 (209)
                      +.+|+|+|++||||||+++.|++.+......  .........+.++..+..+++++...  ...++....         .
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            6799999999999999999999988522110  00111111133566777777777522  222222221         1


Q ss_pred             ----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388           88 ----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (209)
Q Consensus        88 ----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~  149 (209)
                          .+...+.  .+..||.|.|..+            ..+...+...  ....|+++|||++|++++.+|+..|  .  
T Consensus        83 ~~~~~i~~~l~--~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R--~--  156 (212)
T PRK13974         83 HVSKIIRPALE--NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNR--K--  156 (212)
T ss_pred             HHHHHHHHHHH--CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--c--
Confidence                1222222  3678888865333            1223333332  3457999999999999999999876  2  


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      ++   .+.++...|.+...+.+..+...+.+..+|++.+++++.++|.+.|...
T Consensus       157 dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~  207 (212)
T PRK13974        157 PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNN  207 (212)
T ss_pred             cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            22   3455666788888888888888888999999999999999999888754

>PRK06217 hypothetical protein; Validated

Probab=99.79  E-value=1.5e-17  Score=119.50  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|.|+|||||||+++.|++.+|+++++.|+++...  .+..+.          ...+.+.....+...+.  .+..+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~   67 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLR--PREGW   67 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHh--cCCCE
Confidence            56999999999999999999999999999999887642  111110          12233444444454543  24679


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc---CCC---CCCc----HHHHHHHHHHHHh------
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN---QGR---EDDN----VETIRKRFKVFLE------  165 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~---~~~---~~~~----~~~~~~~~~~~~~------  165 (209)
                      |+||++...  ...    ....++.+|||++|.+++.+|+..|.   .++   ....    ...+.++...|..      
T Consensus        68 vi~G~~~~~--~~~----~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  141 (183)
T PRK06217         68 VLSGSALGW--GDP----LEPLFDLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGR  141 (183)
T ss_pred             EEEccHHHH--HHH----HHhhCCEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcc
Confidence            999986432  111    12347889999999999999999982   122   1111    1223333333332      


Q ss_pred             hchhHHHHHhhc-CcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          166 SSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       166 ~~~~~~~~~~~~-~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .......++... ..++.+++..++++..+.|.+.|...
T Consensus       142 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~~  180 (183)
T PRK06217        142 SLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLASA  180 (183)
T ss_pred             cHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhcc
Confidence            111112222322 46788899899999999999998654

>PRK13949 shikimate kinase; Provisional

Probab=99.79  E-value=3.9e-17  Score=115.51  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      .|+|.|+|||||||+++.|++.+++.+++.|.++.....  ......+.   ..+.....+....++.+ +.. ....||
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~--~~~~~~~~---~~g~~~fr~~e~~~l~~-l~~-~~~~vi   75 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH--KTVGDIFA---ERGEAVFRELERNMLHE-VAE-FEDVVI   75 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC--ccHHHHHH---HhCHHHHHHHHHHHHHH-HHh-CCCEEE
Confidence            599999999999999999999999999999988765521  11111111   11222223333445554 322 233444


Q ss_pred             EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc---HHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN---VETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       103 ~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      ..|  .+........+.+     .+++|||++|++++.+|+..+.+.|+...   .+.+.+.+...++...++   |.. 
T Consensus        76 s~Ggg~~~~~~~~~~l~~-----~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~---Y~~-  146 (169)
T PRK13949         76 STGGGAPCFFDNMELMNA-----SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPF---YRQ-  146 (169)
T ss_pred             EcCCcccCCHHHHHHHHh-----CCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHH---HHh-
Confidence            454  4455555656555     46899999999999999985312344321   233444444444544444   444 


Q ss_pred             CcEEEEcC-CCChHHHHHHHHHh
Q 028388          178 GKVRKIDA-AKPVAEVFDAVKAV  199 (209)
Q Consensus       178 ~~~~~id~-~~~~ee~~~~i~~~  199 (209)
                      .+ +.+|+ +.+++++++.|.+.
T Consensus       147 ad-~~id~~~~~~~e~~~~I~~~  168 (169)
T PRK13949        147 AK-IIFNADKLEDESQIEQLVQR  168 (169)
T ss_pred             CC-EEEECCCCCHHHHHHHHHHh
Confidence            33 45665 55889999888764

>PRK08356 hypothetical protein; Provisional

Probab=99.79  E-value=7.3e-18  Score=122.26  Aligned_cols=170  Identities=20%  Similarity=0.261  Sum_probs=102.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC-Cch------HHH----HHHHHHcCCCCC----HHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG-SEN------GTM----IQNMIKEGKIVP----SEV   84 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~-~~~------~~~----~~~~~~~~~~~~----~~~   84 (209)
                      ..++|+|+|+|||||||+|+.|+ ++|+.+++.++.++...... ..+      ...    ...++..+...+    .+.
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            34789999999999999999996 58999999988554332221 000      000    011222222222    244


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC----cHHHHHHHH
Q 028388           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD----NVETIRKRF  160 (209)
Q Consensus        85 ~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~----~~~~~~~~~  160 (209)
                      +...+.+.+.  ....+++||+ ++..+...+.. .   ...+||+++|++++.+|+..|  +....    ..+.+.+..
T Consensus        83 ~~~~~~~~~~--~~~~ividG~-r~~~q~~~l~~-~---~~~vi~l~~~~~~~~~Rl~~R--~~~~~~~~~~~e~~~~~~  153 (195)
T PRK08356         83 LIRLAVDKKR--NCKNIAIDGV-RSRGEVEAIKR-M---GGKVIYVEAKPEIRFERLRRR--GAEKDKGIKSFEDFLKFD  153 (195)
T ss_pred             HHHHHHHHhc--cCCeEEEcCc-CCHHHHHHHHh-c---CCEEEEEECCHHHHHHHHHhc--CCccccccccHHHHHHHH
Confidence            4444444443  2346999999 99998888776 2   247999999999999999988  33211    233332221


Q ss_pred             HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      . .+...... ..+....+++++| +.+++++.++|.++++.
T Consensus       154 ~-~~~~l~~~-~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        154 E-WEEKLYHT-TKLKDKADFVIVN-EGTLEELRKKVEEILRE  192 (195)
T ss_pred             H-HHHHhhhh-hhHHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence            1 11110011 1122334555544 56999999999988764

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.78  E-value=1.6e-17  Score=115.16  Aligned_cols=163  Identities=20%  Similarity=0.311  Sum_probs=106.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      .+.|+++|++||||||+.+.||+.|++++++.|.++.+..      +..+.+.+ ..|+......-..++.......   
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~---   72 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEED---   72 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence            3569999999999999999999999999999999998863      22233333 2244444445566666666632   


Q ss_pred             eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       100 ~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      ..|+.   |.....+.+..+..     ...+|||++|.+++++|+..+ ..||.-...+-.+.+....+...++   |++
T Consensus        73 ~~ViaTGGG~v~~~enr~~l~~-----~g~vv~L~~~~e~l~~Rl~~~-~~RPll~~~~~~~~l~~L~~~R~~~---Y~e  143 (172)
T COG0703          73 NAVIATGGGAVLSEENRNLLKK-----RGIVVYLDAPFETLYERLQRD-RKRPLLQTEDPREELEELLEERQPL---YRE  143 (172)
T ss_pred             CeEEECCCccccCHHHHHHHHh-----CCeEEEEeCCHHHHHHHhccc-cCCCcccCCChHHHHHHHHHHHHHH---HHH
Confidence            24433   35555666666665     227999999999999999944 1333222222233344444444444   444


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .+ .++++++...++++++|...+..
T Consensus       144 ~a-~~~~~~~~~~~~v~~~i~~~l~~  168 (172)
T COG0703         144 VA-DFIIDTDDRSEEVVEEILEALEG  168 (172)
T ss_pred             hC-cEEecCCCCcHHHHHHHHHHHHH
Confidence            44 45666655558899998887754

>PRK13948 shikimate kinase; Provisional

Probab=99.78  E-value=3e-17  Score=116.84  Aligned_cols=166  Identities=17%  Similarity=0.181  Sum_probs=101.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +..|..|+++|++||||||+++.|++.+++.+++.|..+.+..  +......+.   ..++....+....++...+..  
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~--g~si~~if~---~~Ge~~fR~~E~~~l~~l~~~--   79 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT--GKSIPEIFR---HLGEAYFRRCEAEVVRRLTRL--   79 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH--hCCHHHHHH---HhCHHHHHHHHHHHHHHHHhc--
Confidence            3457899999999999999999999999999999988777653  122222221   223323233334445554432  


Q ss_pred             CCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388           98 NDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus        98 ~~~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                       ...|+.   |.+........+.+     ...+|||+++++++.+|+..+  .|+......-.+++....+...++   |
T Consensus        80 -~~~VIa~GgG~v~~~~n~~~l~~-----~g~vV~L~~~~e~l~~Rl~~~--~RPll~~~~~~~~l~~l~~~R~~~---Y  148 (182)
T PRK13948         80 -DYAVISLGGGTFMHEENRRKLLS-----RGPVVVLWASPETIYERTRPG--DRPLLQVEDPLGRIRTLLNEREPV---Y  148 (182)
T ss_pred             -CCeEEECCCcEEcCHHHHHHHHc-----CCeEEEEECCHHHHHHHhcCC--CCCCCCCCChHHHHHHHHHHHHHH---H
Confidence             233443   34444555555444     246899999999999999654  344321111123444444444444   4


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .. ..+.+...+.+++++++.|.+.+..
T Consensus       149 ~~-a~~~i~t~~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        149 RQ-ATIHVSTDGRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             Hh-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence            33 3344433467999999999888754

>PRK08233 hypothetical protein; Provisional

Probab=99.78  E-value=9.9e-18  Score=120.40  Aligned_cols=169  Identities=18%  Similarity=0.179  Sum_probs=97.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQKAMEE   95 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~   95 (209)
                      ++++|+|.|+|||||||+|+.|++.++. .++..|.+....      .......+...+...   ..+.+...+...+..
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   75 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------CPEDICKWIDKGANYSEWVLTPLIKDIQELIAK   75 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc------CchhhhhhhhccCChhhhhhHHHHHHHHHHHcC
Confidence            4689999999999999999999999963 333332221110      001112222222221   112223333333322


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH-
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY-  174 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (209)
                      .....+|+|+ +....... +.    ..+|++|||++|++++.+|+.+|  ...+...+.+.+++..|.....+.+..+ 
T Consensus        76 ~~~~~vivd~-~~~~~~~~-~~----~~~d~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~~~~y~~~~  147 (182)
T PRK08233         76 SNVDYIIVDY-PFAYLNSE-MR----QFIDVTIFIDTPLDIAMARRILR--DFKEDTGNEIHNDLKHYLNYARPLYLEAL  147 (182)
T ss_pred             CCceEEEEee-ehhhccHH-HH----HHcCEEEEEcCCHHHHHHHHHHH--HhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence            1124455665 32211111 11    23789999999999999998877  2211222345566666766666654322 


Q ss_pred             hh--cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EA--KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~--~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..  ....+++|++.+.+++.++|...+.+
T Consensus       148 ~~~~~~~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        148 HTVKPNADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             hcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence            11  13457799999999999999988765

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.77  E-value=5.5e-18  Score=131.01  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=105.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      +.+|++.|+|||||||+|+.|++++ ++.+++.|++. ..+......+..  .+...............+...+.  .+.
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~--~g~   76 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLR-QSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALK--SGK   76 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHH-HHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHH--cCC
Confidence            4689999999999999999999999 89999996654 433222111100  00000000001122233333333  468


Q ss_pred             eEEEeCCCCCHHHHHHHHHh-cCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHH---HHHHHHHhhchhHHHHH
Q 028388          100 KFLIDGFPRNEENRAAFEAV-TKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIR---KRFKVFLESSLPVVQYY  174 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~-~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  174 (209)
                      .+|+|+++....+...+..+ ...... .+|+|++|.+++.+|+..|  +....+.+.+.   +++..+.....|++..+
T Consensus        77 ~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~  154 (300)
T PHA02530         77 SVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR--GERAVPEDVLRSMFKQMKEYRGLVWPVYTAD  154 (300)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc--CcCCCCHHHHHHHHHHHHHhcCCCCceeccC
Confidence            89999999888887776653 222222 3799999999999999999  54445555555   67777777777776666


Q ss_pred             hhcCcEEEEcCCCChHH
Q 028388          175 EAKGKVRKIDAAKPVAE  191 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee  191 (209)
                      .....++.+|.+.++.+
T Consensus       155 ~~~~~~~~~D~dgtl~~  171 (300)
T PHA02530        155 PGLPKAVIFDIDGTLAK  171 (300)
T ss_pred             CCCCCEEEEECCCcCcC
Confidence            55456778887666543

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.76  E-value=3.1e-17  Score=112.62  Aligned_cols=153  Identities=18%  Similarity=0.339  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      |+|+|+|.||+||||+|..|+ .+|+.+++..++..+.   +.-.+  ..+ ......+..+.+...++..+.   ....
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~~--~de-~r~s~~vD~d~~~~~le~~~~---~~~~   70 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYTE--YDE-LRKSVIVDVDKLRKRLEELLR---EGSG   70 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc---CCeec--cCC-ccceEEeeHHHHHHHHHHHhc---cCCe
Confidence            579999999999999999999 9999999998877654   11000  000 000112233444555555542   4778


Q ss_pred             EEeCCCCCHHHHHHHHHhcCC-CCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388          102 LIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKRFKVFLESSLPVVQYYEAKGK  179 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~-~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (209)
                      |+|++.         .  +.. .+|++|.|.++|+++.+|+.+|  |-+... .+++...+..-     -+.+..+....
T Consensus        71 Ivd~H~---------~--hl~~~~dlVvVLR~~p~~L~~RLk~R--Gy~~eKI~ENveAEi~~v-----i~~EA~E~~~~  132 (180)
T COG1936          71 IVDSHL---------S--HLLPDCDLVVVLRADPEVLYERLKGR--GYSEEKILENVEAEILDV-----ILIEAVERFEA  132 (180)
T ss_pred             Eeechh---------h--hcCCCCCEEEEEcCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHHH-----HHHHHHHhcCc
Confidence            999752         1  223 4899999999999999999999  544332 23333332211     01222333356


Q ss_pred             EEEEcC-CCChHHHHHHHHHhcCc
Q 028388          180 VRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       180 ~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      ++.+|. +.+++++++.|.+.+..
T Consensus       133 v~evdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         133 VIEVDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             eEEEECCCCCHHHHHHHHHHHHcc
Confidence            788886 77999999999998873

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.76  E-value=2e-16  Score=115.69  Aligned_cols=171  Identities=18%  Similarity=0.256  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHc--CCCCCHHHH-------HH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKE--GKIVPSEVT-------IK   87 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~   87 (209)
                      ++++|+|+|++||||||+++.|++.++.   ..+..    +.  +.+...+..+...+..  ....+....       ..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   75 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ   75 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999999998732   11111    00  1112233444444331  111111111       11


Q ss_pred             HHHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCC-
Q 028388           88 LLQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRED-  150 (209)
Q Consensus        88 ~i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~-  150 (209)
                      .+...+..  ..+..+|+|.++.+.            .+...+...  ....||++|||++|++++.+|+.+|  +..+ 
T Consensus        76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R--~~~~~  153 (205)
T PRK00698         76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRAR--GELDR  153 (205)
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcch
Confidence            11111111  247899999755432            122222221  2267999999999999999999988  4211 


Q ss_pred             --CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          151 --DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       151 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                        .....+.+++...+.   .+..  .....++++|++.+++++.++|.+.|.+.
T Consensus       154 ~~~~~~~~~~~~~~~y~---~~~~--~~~~~~~~Id~~~~~e~v~~~i~~~i~~~  203 (205)
T PRK00698        154 IEQEGLDFFERVREGYL---ELAE--KEPERIVVIDASQSLEEVHEDILAVIKAW  203 (205)
T ss_pred             hhhhhHHHHHHHHHHHH---HHHH--hCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence              111223333332211   1111  12236788999999999999999887543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.75  E-value=4.1e-16  Score=113.49  Aligned_cols=167  Identities=19%  Similarity=0.315  Sum_probs=93.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCC---CCCHHHH-------HHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---IVPSEVT-------IKL   88 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~   88 (209)
                      ++|+|+|++||||||+++.|++.+   |+.++....      +.....+..++.++....   ..+....       ...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   74 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH   74 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence            479999999999999999999999   544443211      011112223333322211   1111100       111


Q ss_pred             HHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           89 LQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        89 i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                      +.+.+..  ..+..+|+|.++.+-            .+...+...  ....|+.+|||++|++++.+|+.+|  ++....
T Consensus        75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~  152 (200)
T cd01672          75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEAR--GRDDRD  152 (200)
T ss_pred             HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhc--CCcchh
Confidence            1111211  247899999765331            122222221  3357999999999999999999988  432221


Q ss_pred             ---HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          153 ---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       153 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                         ...+.+++...+.   .+...+  ...++++|++.+++++.++|.+.|.
T Consensus       153 ~~~~~~~~~~~~~~y~---~~~~~~--~~~~~~id~~~~~e~i~~~i~~~i~  199 (200)
T cd01672         153 EQEGLEFHERVREGYL---ELAAQE--PERIIVIDASQPLEEVLAEILKAIL  199 (200)
T ss_pred             hhhhHHHHHHHHHHHH---HHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHh
Confidence               1222222222111   111111  2367899999999999999988764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.75  E-value=2.2e-16  Score=114.62  Aligned_cols=162  Identities=17%  Similarity=0.274  Sum_probs=87.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCH------------H
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS------------E   83 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~   83 (209)
                      +++|+|+|+|||||||+++.|++.++.   .++-...      +.....+..+++++....  ....            .
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~   76 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE------PGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE   76 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999999853   2221100      011222333333321111  1110            0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCH------------HHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQGRE  149 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~------------~~~~~~~~~~~~--~~~~~i~L~~~~~~~~~R~~~r~~~~~  149 (209)
                      .....+...+.  .+..+|+|.+..+-            .+...+.. ...  .|+++|||++|++++.+|+..|  +..
T Consensus        77 ~~~~~i~~~l~--~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~-~~~~~~~d~~i~l~~~~~~~~~R~~~r--~~~  151 (195)
T TIGR00041        77 HLEDKIKPALA--EGKLVISDRYVFSSIAYQGGARGIDEDLVLELNE-DALGDMPDLTIYLDIDPEVALERLRKR--GEL  151 (195)
T ss_pred             HHHHHHHHHHh--CCCEEEECCcccHHHHHccccCCCCHHHHHHHHH-HhhCCCCCEEEEEeCCHHHHHHHHHhc--CCc
Confidence            11122222222  36789999753221            12222322 222  3999999999999999999988  332


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHH
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i  196 (209)
                      .  ..... ....+........+.+.....++++|++.+++++..+|
T Consensus       152 ~--~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       152 D--REEFE-KLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             c--hHHHH-HHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence            1  11111 11111111111122233244688999999999988764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.75  E-value=1.6e-16  Score=113.34  Aligned_cols=169  Identities=21%  Similarity=0.337  Sum_probs=96.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      |+.++.|+|+|+|||||||+++.|++.+|+.+++.|+++....  +.........   .+..........++......  
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~---~g~~~~~~~~~~~~~~l~~~--   73 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA--GKSIPEIFEE---EGEAAFRELEEEVLAELLAR--   73 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhc--
Confidence            4567899999999999999999999999999999988876542  2222211111   11111112223344444432  


Q ss_pred             CCeEEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           98 NDKFLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        98 ~~~~i~dg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ...+|..|.  .........+.     ....+|||++|++.+.+|+..|.. ++....+...+.+..+.....+.   |.
T Consensus        74 ~~~vi~~g~~~~~~~~~r~~l~-----~~~~~v~l~~~~~~~~~R~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~---~~  144 (175)
T PRK00131         74 HNLVISTGGGAVLREENRALLR-----ERGTVVYLDASFEELLRRLRRDRN-RPLLQTNDPKEKLRDLYEERDPL---YE  144 (175)
T ss_pred             CCCEEEeCCCEeecHHHHHHHH-----hCCEEEEEECCHHHHHHHhcCCCC-CCcCCCCChHHHHHHHHHHHHHH---HH
Confidence            233444331  11222222221     234799999999999999998721 22111111122222232322222   33


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...++++..++.+++++++.|.+.+..
T Consensus       145 ~~~dl~idt~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        145 EVADITVETDGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             hhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence            323454444578999999999988754

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=99.74  E-value=2.6e-16  Score=116.09  Aligned_cols=172  Identities=15%  Similarity=0.270  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHH-HHHHH-HcCCchHH------HHHHHHHcCC---CCCHHHH------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL-LRAEI-KSGSENGT------MIQNMIKEGK---IVPSEVT------   85 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~-~~~~~-~~~~~~~~------~~~~~~~~~~---~~~~~~~------   85 (209)
                      +|+|+|+.||||||+++.|+++++..++..... ..... +.+...+.      .++.+.....   .......      
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~   80 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS   80 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence            589999999999999999999998755533200 00000 00111111      1222222211   1111111      


Q ss_pred             -HHHHHHHHHh--cCCCeEEEeCCCCCH------------------HHHHHHHHh---cCCCCcEEEEEecCHHHHHHHH
Q 028388           86 -IKLLQKAMEE--SGNDKFLIDGFPRNE------------------ENRAAFEAV---TKIEPEFVLFFDCSEEEMERRI  141 (209)
Q Consensus        86 -~~~i~~~~~~--~~~~~~i~dg~~~~~------------------~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~  141 (209)
                       ...+...+..  ..+..||+|++..+-                  .....+.+.   ....||++|||++|++.+.+|+
T Consensus        81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri  160 (219)
T cd02030          81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI  160 (219)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence             1111111111  136789999874331                  111111110   3367999999999999999999


Q ss_pred             hhccCCCCCC--cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC--CChHHHHHHHHH
Q 028388          142 LNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKA  198 (209)
Q Consensus       142 ~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~ee~~~~i~~  198 (209)
                      .+|  ++...  ....+.+++...+..+  ....+.....++++|++  .++++++++|..
T Consensus       161 ~~R--~~~~e~~~~~~yl~~l~~~y~~~--~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         161 KKR--GDPHEMKVTSAYLQDIENAYKKT--FLPEISEHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             HHc--CCchhhcccHHHHHHHHHHHHHH--HHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence            998  44321  2223333443333221  01113345578999987  788888887754

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK04182 cytidylate kinase; Provisional

Probab=99.74  E-value=5.6e-16  Score=111.07  Aligned_cols=167  Identities=20%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+++.|++.+|+++++.+++++............+......... ....+...+.....  .+.++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~   77 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPE-IDKEIDRRQLEIAE--KEDNV   77 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCch-HHHHHHHHHHHHHh--cCCCE
Confidence            4799999999999999999999999999999888887654322111112111111111 01111222222211  34678


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH-HHHHh-----
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV-VQYYE-----  175 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----  175 (209)
                      |+||.....     +   ....++++|||++|++++.+|+..|  ..  .+.....+.+.......... ...|.     
T Consensus        78 Vi~g~~~~~-----~---~~~~~~~~V~l~a~~e~~~~Rl~~r--~~--~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~  145 (180)
T PRK04182         78 VLEGRLAGW-----M---AKDYADLKIWLKAPLEVRAERIAER--EG--ISVEEALEETIEREESEAKRYKEYYGIDIDD  145 (180)
T ss_pred             EEEEeecce-----E---ecCCCCEEEEEECCHHHHHHHHHhc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            888742111     1   1112678999999999999999987  21  12222222111111111111 11111     


Q ss_pred             -hcCcEEEEcC-CCChHHHHHHHHHhcCcch
Q 028388          176 -AKGKVRKIDA-AKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       176 -~~~~~~~id~-~~~~ee~~~~i~~~i~~~~  204 (209)
                       .... +++|+ ..+++++++.|.+.+....
T Consensus       146 ~~~~d-~~idt~~~~~~~~~~~I~~~~~~~~  175 (180)
T PRK04182        146 LSIYD-LVINTSRWDPEGVFDIILTAIDKLL  175 (180)
T ss_pred             ccccc-EEEECCCCCHHHHHHHHHHHHHHHh
Confidence             2233 45554 6799999999998886543

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.74  E-value=5e-16  Score=110.47  Aligned_cols=164  Identities=18%  Similarity=0.282  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ..|+|+|+|||||||+++.|++++|+++++.|.+.....  +.........   .++....+....++. .+.  ....+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~~~~~~~---~g~~~~~~~e~~~~~-~~~--~~~~v   74 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTVAEIVER---EGWAGFRARESAALE-AVT--APSTV   74 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHH-Hhc--CCCeE
Confidence            358889999999999999999999999999988776652  2222221111   111111111223332 222  22333


Q ss_pred             EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       102 i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      |.-|  ++........+..     .+++|||++|++++.+|+..|  ...++......+.+.+....+...+   .|...
T Consensus        75 i~~ggg~vl~~~~~~~l~~-----~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~---~y~~~  146 (171)
T PRK03731         75 IATGGGIILTEENRHFMRN-----NGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREA---LYREV  146 (171)
T ss_pred             EECCCCccCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHH---HHHHh
Confidence            3333  3333333333333     567999999999999999876  1122211111222222223232222   23332


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      . .+++|++.++++++++|.+.+..
T Consensus       147 a-~~~Id~~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        147 A-HHIIDATQPPSQVVSEILSALAQ  170 (171)
T ss_pred             C-CEEEcCCCCHHHHHHHHHHHHhc
Confidence            2 37888889999999999988753

>PRK13946 shikimate kinase; Provisional

Probab=99.74  E-value=5.9e-16  Score=111.23  Aligned_cols=165  Identities=17%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      .++.|+++|+|||||||+++.|++++|+++++.|.......  +......+..   .+..........++.....  .+.
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~---~ge~~~~~~e~~~l~~l~~--~~~   81 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAA---YGEPEFRDLERRVIARLLK--GGP   81 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHh--cCC
Confidence            45689999999999999999999999999999987665542  2222222111   1111112222444444443  234


Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC---CcHHHHHHHHHHHHhhchhHHHHH
Q 028388          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED---DNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus       100 ~~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      .||..|  .+........+..     ..++|||++|++++.+|+..|. +++.   .....   .+....+...+   .|
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~-----~~~~v~L~a~~e~~~~Rl~~r~-~rp~~~~~~~~~---~i~~~~~~R~~---~y  149 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAE-----KGISVWLKADLDVLWERVSRRD-TRPLLRTADPKE---TLARLMEERYP---VY  149 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHc-----CCEEEEEECCHHHHHHHhcCCC-CCCcCCCCChHH---HHHHHHHHHHH---HH
Confidence            555554  2344444444433     3478999999999999999871 1221   11112   22222222223   24


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .. .++.+.+++.+++++++.|...+....
T Consensus       150 ~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~  178 (184)
T PRK13946        150 AE-ADLTVASRDVPKEVMADEVIEALAAYL  178 (184)
T ss_pred             Hh-CCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            43 456666668899999999998887654

>PRK08118 topology modulation protein; Reviewed

Probab=99.74  E-value=1e-16  Score=113.18  Aligned_cols=141  Identities=18%  Similarity=0.280  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|+|+|||||||+|+.|++.++.++++.|+++...                .....+.+....++...+.   ...+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~---~~~w   62 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK---EDEW   62 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc---CCCE
Confidence            46999999999999999999999999999998876531                0122334444555555444   3579


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c-CCC--CC---CcHH----HHHHHHHHHHhhchh
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N-QGR--ED---DNVE----TIRKRFKVFLESSLP  169 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~-~~~--~~---~~~~----~~~~~~~~~~~~~~~  169 (209)
                      |+||.+..... ..     ...+|.+|||++|.+++..|+.+|  . .+.  ++   ...+    .+.+.+..|....++
T Consensus        63 VidG~~~~~~~-~~-----l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~  136 (167)
T PRK08118         63 IIDGNYGGTMD-IR-----LNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRP  136 (167)
T ss_pred             EEeCCcchHHH-HH-----HHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhH
Confidence            99996432211 12     224899999999999999999998  1 221  11   1112    455666666655555


Q ss_pred             HH-HHHhh---cCcEEEEcCCC
Q 028388          170 VV-QYYEA---KGKVRKIDAAK  187 (209)
Q Consensus       170 ~~-~~~~~---~~~~~~id~~~  187 (209)
                      .+ ..+..   ...++.+.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~l~~~~  158 (167)
T PRK08118        137 SILKRLNQLSEEKDIVILKSRN  158 (167)
T ss_pred             HHHHHHHhcCCCCeEEEECCHH
Confidence            32 22222   22566677643

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.74  E-value=2.2e-16  Score=114.32  Aligned_cols=163  Identities=17%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (209)
                      .+|+|+|++||||||+++.|++ +|+++++.|.+.++.+..+......+.+.+..     ...+....+           
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999998 99999999999999877666555555444422     112222111           


Q ss_pred             -----------HHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           86 -----------IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        86 -----------~~~i~~~~~~~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                                 ...+...+.... ...+|+|.- ...+.  .+    ...+|.+|++++|++++.+|+..|  .  ....
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~p-ll~e~--~~----~~~~D~vi~V~a~~e~~~~Rl~~R--~--~~s~  150 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIP-LLFEN--GL----EKLVDRVLVVDAPPETQLERLMAR--D--GLSE  150 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEeh-HhhcC--Cc----hhhCCeEEEEECCHHHHHHHHHHc--C--CCCH
Confidence                       122223333222 256777752 11110  11    124789999999999999999987  2  3455


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +.+..++.....    ..+... ... ++|+++.+.+++.+++.++++.
T Consensus       151 e~~~~ri~~Q~~----~~~~~~-~ad-~vI~N~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        151 EEAEAIIASQMP----REEKLA-RAD-DVIDNNGDLEELRKQVERLLQE  193 (194)
T ss_pred             HHHHHHHHHhCC----HHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHh
Confidence            667766654322    222112 222 6777777999999999887643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.74  E-value=3e-16  Score=113.49  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----C-CCCHHHH----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----K-IVPSEVT----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~----------   85 (209)
                      ++|+|+|++||||||+++.|++.+|+++++.|++.++.+..+......+.+.+...     . .+....+          
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            47999999999999999999999999999999999998877776666666555321     1 1111111          


Q ss_pred             ------------HHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           86 ------------IKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        86 ------------~~~i~~~~~~~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                                  ...+...+.... ...+++|. |...+.  .+.    ..+|.+|+++||.+++.+|+..|  .  ...
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~----~~~D~ii~V~a~~e~r~~Rl~~R--~--g~s  150 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT----DLCSEIWVVDCSPEQQLQRLIKR--D--GLT  150 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH----hCCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                        122233333222 34666663 211111  111    24789999999999999999987  2  345


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .+.+..++...   . +... .....+ ++|+++.+.+++.+++.+++
T Consensus       151 ~e~~~~ri~~Q---~-~~~~-k~~~aD-~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        151 EEEAEARINAQ---W-PLEE-KVKLAD-VVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             HHHHHHHHHhC---C-CHHH-HHhhCC-EEEECCCCHHHHHHHHHHHH
Confidence            56666665432   1 2222 122233 46777779999999998775

>PRK07933 thymidylate kinase; Validated

Probab=99.73  E-value=1.3e-16  Score=116.95  Aligned_cols=171  Identities=13%  Similarity=0.127  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC---ceec----------HhHHHHHHHHcCCc-h--HHHHHHHHHcCCCCCHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY---THLS----------AGDLLRAEIKSGSE-N--GTMIQNMIKEGKIVPSEVT   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~----------~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~   85 (209)
                      ++|+|+|+.||||||+++.|+++|..   .++-          .++.+++.+..... .  .......+-...+.  +. 
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~--~~-   77 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRA--GA-   77 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhh--hh-
Confidence            57999999999999999999999942   2211          13444444332110 0  00001111111110  00 


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCHH--------------HHHHHHHh-----cCCCCcEEEEEecCHHHHHHHHhhccC
Q 028388           86 IKLLQKAMEESGNDKFLIDGFPRNEE--------------NRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRNQ  146 (209)
Q Consensus        86 ~~~i~~~~~~~~~~~~i~dg~~~~~~--------------~~~~~~~~-----~~~~~~~~i~L~~~~~~~~~R~~~r~~  146 (209)
                      ...+..++.  .+..||+|+|..+-.              ....+..+     ....||++|||++|++++.+|+.+|  
T Consensus        78 ~~~I~p~l~--~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R--  153 (213)
T PRK07933         78 RDELAGLLA--AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRR--  153 (213)
T ss_pred             HHHHHHHHh--CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhh--
Confidence            112333333  478999998764421              01111111     2347999999999999999999988  


Q ss_pred             CCCC--CcHHHHHHHHHHHHhhchhHHHHHhh---cCcEEEEcCCCChHHHHHHHHHhc
Q 028388          147 GRED--DNVETIRKRFKVFLESSLPVVQYYEA---KGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       147 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ++..  ...+.+.. -..|.+.....+..+..   ...++++|++.+++++.+.|.+.|
T Consensus       154 ~~~~~~~~~d~~E~-~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        154 AAQDADRARDAYER-DDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             ccccCCcccccccc-cHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence            3211  00011111 11222223222222222   237888999999999999998765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.73  E-value=5.4e-16  Score=110.08  Aligned_cols=167  Identities=16%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      .++..|+|.|++||||||+++.|++.+++.+++.|..+....  +......+..   .+.....+....++.....  . 
T Consensus         2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~---~g~~~fr~~e~~~l~~l~~--~-   73 (172)
T PRK05057          2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDV---EGEEGFRDREEKVINELTE--K-   73 (172)
T ss_pred             CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHH---hCHHHHHHHHHHHHHHHHh--C-
Confidence            456789999999999999999999999999999987665442  2222211111   1111111122334444322  2 


Q ss_pred             CeEEEe-C--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           99 DKFLID-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        99 ~~~i~d-g--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ..+++. |  .+........+..     .+.+|||++|.+++.+|+..+ ..|+........+.+..+.+...++   |.
T Consensus        74 ~~~vi~~ggg~v~~~~~~~~l~~-----~~~vv~L~~~~e~~~~Ri~~~-~~rP~~~~~~~~~~~~~l~~~R~~~---Y~  144 (172)
T PRK05057         74 QGIVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRD-KKRPLLQVDDPREVLEALANERNPL---YE  144 (172)
T ss_pred             CCEEEEcCCchhCCHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCC-CCCCCCCCCCHHHHHHHHHHHHHHH---HH
Confidence            334443 2  2233344444444     357999999999999999865 1232221111122233444444454   44


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...++.+..++.+++++++.|.+.+..
T Consensus       145 ~~Ad~~idt~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        145 EIADVTIRTDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             hhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence            434444433467999999999887753

>PRK13947 shikimate kinase; Provisional

Probab=99.72  E-value=5.1e-16  Score=110.44  Aligned_cols=163  Identities=16%  Similarity=0.244  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      .|+|.|+|||||||+++.|++.+|+++++.|.++... . +....+.+..   .+.....+....+++. +.. ....+|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~---~ge~~~~~~e~~~~~~-l~~-~~~~vi   75 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM-T-GMTVAEIFEK---DGEVRFRSEEKLLVKK-LAR-LKNLVI   75 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh-c-CCcHHHHHHH---hChHHHHHHHHHHHHH-Hhh-cCCeEE
Confidence            4999999999999999999999999999998877665 1 2222111111   1111111222223332 221 123333


Q ss_pred             EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcE
Q 028388          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV  180 (209)
Q Consensus       103 ~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (209)
                      -.|  .+........+.+     ..++|||++|++.+.+|+..| ..++........+++....+...+   +|. ...+
T Consensus        76 ~~g~g~vl~~~~~~~l~~-----~~~vv~L~~~~~~l~~Rl~~r-~~rp~~~~~~~~~~i~~~~~~r~~---~y~-~ad~  145 (171)
T PRK13947         76 ATGGGVVLNPENVVQLRK-----NGVVICLKARPEVILRRVGKK-KSRPLLMVGDPEERIKELLKEREP---FYD-FADY  145 (171)
T ss_pred             ECCCCCcCCHHHHHHHHh-----CCEEEEEECCHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH---HHH-hcCE
Confidence            222  3333444444433     247999999999999999876 123221112233333333332222   233 2345


Q ss_pred             EEEcCCCChHHHHHHHHH-hcCc
Q 028388          181 RKIDAAKPVAEVFDAVKA-VFTP  202 (209)
Q Consensus       181 ~~id~~~~~ee~~~~i~~-~i~~  202 (209)
                      ++.+++.++++++++|.+ ++..
T Consensus       146 ~Idt~~~~~~~i~~~I~~~~~~~  168 (171)
T PRK13947        146 TIDTGDMTIDEVAEEIIKAYLKL  168 (171)
T ss_pred             EEECCCCCHHHHHHHHHHHHHhh
Confidence            555567899999999998 6544

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.71  E-value=3e-15  Score=108.04  Aligned_cols=173  Identities=13%  Similarity=0.196  Sum_probs=102.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCC----HHH----------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVP----SEV----------   84 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~----------   84 (209)
                      ++++|+|+|+|||||||+|+.|++++++.++..+|++++.+....... ......+..+..++    ...          
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999998877532211 00001010011111    111          


Q ss_pred             ----HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhc-cCCCCCCcHHHHHH
Q 028388           85 ----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNR-NQGREDDNVETIRK  158 (209)
Q Consensus        85 ----~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r-~~~~~~~~~~~~~~  158 (209)
                          +..++...+.  .+.++|+|+.+........... .  . ..++++.+ ++++..+|+..| .......+.+.+.+
T Consensus        82 v~~~L~~va~~~l~--~G~sVIvEgv~l~p~~~~~~~~-~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~  155 (197)
T PRK12339         82 IMPGINRVIRRALL--NGEDLVIESLYFHPPMIDENRT-N--N-IRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAE  155 (197)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEecCcCHHHHHHHHh-c--C-eEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHH
Confidence                1222333333  5899999997666555433222 1  1 25666665 678888999999 11122233444555


Q ss_pred             HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .+...+....-+.+...+.+ +-++++. ++++.++.+.+.+
T Consensus       156 ~~~~ir~i~~~l~~~a~~~~-i~~i~~~-~~~~~~~~~~~~~  195 (197)
T PRK12339        156 HLPEYRTIMDYSIADARGYN-IKVIDTD-NYREARNPLLDPI  195 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHcC-CCeecCc-cHHHHHHHHHHHh
Confidence            55444443333444434433 5566665 6888888777654

>PRK13976 thymidylate kinase; Provisional

Probab=99.71  E-value=3.3e-15  Score=108.96  Aligned_cols=168  Identities=15%  Similarity=0.153  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCc-----eecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-CHHHH-------HHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-PSEVT-------IKL   88 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~   88 (209)
                      ++|+|+|+.||||||+++.|++.|.-.     ++-.    ++  +.++..++.+++.+...... +....       ...
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~e--P~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~   74 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----RE--PGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH   74 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----eC--CCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence            479999999999999999999988532     2111    11  22444555555555431111 11111       112


Q ss_pred             HHHHHHh--cCCCeEEEeCCCCCH------------HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           89 LQKAMEE--SGNDKFLIDGFPRNE------------ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        89 i~~~~~~--~~~~~~i~dg~~~~~------------~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      +.+.+..  ..+..||+|.|..+-            ++...+... ....||++|||++|++++.+|+.++  +......
T Consensus        75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~--~~e~~~~  152 (209)
T PRK13976         75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKN--GYEFMDL  152 (209)
T ss_pred             HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhccc--chhcccH
Confidence            2222221  148899999876441            222223221 2347999999999999999999754  2111122


Q ss_pred             HHHHHHHH-HHHhhchhHHHHHhhcCcEEEEcC---CCC---hHHHHHHHHHhcCcch
Q 028388          154 ETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDA---AKP---VAEVFDAVKAVFTPKD  204 (209)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~---~~~---~ee~~~~i~~~i~~~~  204 (209)
                      + +.++.. .|.+.    ..  .....+..+|+   +.+   ++++.++|.+.|....
T Consensus       153 ~-~l~~v~~~Y~~l----~~--~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~  203 (209)
T PRK13976        153 E-FYDKVRKGFREI----VI--KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT  203 (209)
T ss_pred             H-HHHHHHHHHHHH----HH--hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence            2 222222 22221    11  11234677777   345   8999999988876544

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.71  E-value=5.3e-15  Score=105.13  Aligned_cols=161  Identities=17%  Similarity=0.195  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--CCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--GND   99 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~   99 (209)
                      ++|.|+|++||||||+|+.|++.+|+++++.++++++...........+........     .....+...+...  .+.
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~   75 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK   75 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999999999999998887764432111111111111111     1122222222211  356


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH-HHHHhh--
Q 028388          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV-VQYYEA--  176 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  176 (209)
                      .+|+||.....     +   ....++++|||++|++++.+|+..|  ..  .+.+...+++.......... ..++..  
T Consensus        76 ~~Vi~g~~~~~-----~---~~~~~d~~v~v~a~~~~r~~R~~~R--~~--~s~~~a~~~~~~~d~~~~~~~~~~~~~~~  143 (171)
T TIGR02173        76 NVVLESRLAGW-----I---VREYADVKIWLKAPLEVRARRIAKR--EG--KSLTVARSETIEREESEKRRYLKFYGIDI  143 (171)
T ss_pred             CEEEEecccce-----e---ecCCcCEEEEEECCHHHHHHHHHHc--cC--CCHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            78889864221     1   1234678999999999999999987  22  23333333332221111111 111211  


Q ss_pred             ---cCcEEEEcC-CCChHHHHHHHHHhc
Q 028388          177 ---KGKVRKIDA-AKPVAEVFDAVKAVF  200 (209)
Q Consensus       177 ---~~~~~~id~-~~~~ee~~~~i~~~i  200 (209)
                         ...-+++|+ ..++++ ++.|.+++
T Consensus       144 ~~~~~ydl~i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       144 DDLSIYDLVINTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             cccccccEEEECCCCCHHH-HHHHHHHh
Confidence               111256666 569999 99888765

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.70  E-value=3e-15  Score=105.62  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=91.1

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES   96 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~   96 (209)
                      |+|+|+|||||||+++.|++.++..+++.|++....    ...+.......          ...+.   ...+...+.  
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~--   68 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDD----------RWPWLQNLNDASTAAAA--   68 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhh----------HHHHHHHHHHHHHHHHh--
Confidence            578999999999999999999999999998864221    11111110000          01111   122222222  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      .+..+|+|...........+.. . .....++||++|++++.+|+..|  +......+.+..++..+.   .+.    ..
T Consensus        69 ~~~~~Vi~~t~~~~~~r~~~~~-~-~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~---~~~----~~  137 (163)
T TIGR01313        69 KNKVGIITCSALKRHYRDILRE-A-EPNLHFIYLSGDKDVILERMKAR--KGHFMKADMLESQFAALE---EPL----AD  137 (163)
T ss_pred             cCCCEEEEecccHHHHHHHHHh-c-CCCEEEEEEeCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhC---CCC----CC
Confidence            2444466654443444444443 2 22334799999999999999988  322223344444433321   111    11


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ...++++|++.+++++.+++...+
T Consensus       138 e~~~~~id~~~~~~~~~~~~~~~~  161 (163)
T TIGR01313       138 ETDVLRVDIDQPLEGVEEDCIAVV  161 (163)
T ss_pred             CCceEEEECCCCHHHHHHHHHHHH
Confidence            135799999999999999988765

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=99.70  E-value=3.5e-16  Score=112.77  Aligned_cols=156  Identities=19%  Similarity=0.282  Sum_probs=86.3

Q ss_pred             EEcCCCCChhHHHHHHHHHhCCcee---cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH------------HHHHHHH
Q 028388           26 VLGGPGSGKGTQCANIVEHFGYTHL---SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE------------VTIKLLQ   90 (209)
Q Consensus        26 i~G~pgsGKsTla~~L~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~   90 (209)
                      |+|++||||||+++.|++.|....+   ..-.      +.+...+..+++++.........            .....+.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~------~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~   74 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFP------PGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR   74 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEES------STSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999953221   1000      11223333444433311111111            0112233


Q ss_pred             HHHHhcCCCeEEEeCCCCC------------HHHHHHHHHhcCC--CCcEEEEEecCHHHHHHHHhhccC-CCCCCcHHH
Q 028388           91 KAMEESGNDKFLIDGFPRN------------EENRAAFEAVTKI--EPEFVLFFDCSEEEMERRILNRNQ-GREDDNVET  155 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~~~~--~~~~~i~L~~~~~~~~~R~~~r~~-~~~~~~~~~  155 (209)
                      ..+.  .+..||+|.|..+            ..+...+.. ...  .||++|||++|++++.+|+..|.. .+.......
T Consensus        75 ~~l~--~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~-~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~  151 (186)
T PF02223_consen   75 PALK--RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNK-DIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLE  151 (186)
T ss_dssp             HHHH--TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHH-HHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHH
T ss_pred             HHHc--CCCEEEEechhHHHHHhCccccCCcchhhhHHHH-HhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHH
Confidence            3333  4799999965322            223333333 222  899999999999999999999921 111122222


Q ss_pred             HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHH
Q 028388          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (209)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i  196 (209)
                      +..+   .++..   .+.+.....++++|++.+++++.++|
T Consensus       152 ~~~~---~~~~y---~~l~~~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  152 YLRR---VREAY---LELAKDPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHH---HHHHH---HHHHHTTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHH---HHHHH---HHHHcCCCCEEEEECCCCHHHHHhhC
Confidence            2222   22221   12222456899999999999999876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.69  E-value=5e-15  Score=107.06  Aligned_cols=169  Identities=17%  Similarity=0.131  Sum_probs=103.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc----CCCCCH------------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE----GKIVPS------------   82 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------------   82 (209)
                      -.|..|.|+|.+||||||+++.|++.+|+++++.|.+.++.+.. ......+.+.++.    ...+..            
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~   82 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE   82 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence            34688999999999999999999999999999999888887654 2222222222211    011111            


Q ss_pred             ----------HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           83 ----------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        83 ----------~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                                +.+...+...+.......+++|. |...+....+    ...+|.+|++.||+++..+|+..|    ...+
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~~~~~----~~~~D~vi~V~a~~e~ri~Rl~~R----d~~s  153 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPYNFRH----YDYLKKVIVIKADLETRIRRLMER----DGKN  153 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhccCch----hhhCCEEEEEECCHHHHHHHHHHc----CCCC
Confidence                      11123333333333334666774 2221110000    124789999999999999999977    2334


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHHHHHHhcCcc
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFTPK  203 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~~i~~~i~~~  203 (209)
                      .+...+++.....    ..+. ....+ ++|++++ +.+++..++...+++.
T Consensus       154 ~~~a~~ri~~Q~~----~eek-~~~aD-~VI~N~g~~~~~l~~~~~~~~~~~  199 (204)
T PRK14733        154 RQQAVAFINLQIS----DKER-EKIAD-FVIDNTELTDQELESKLITTINEI  199 (204)
T ss_pred             HHHHHHHHHhCCC----HHHH-HHhCC-EEEECcCCCHHHHHHHHHHHHHHH
Confidence            5566655433211    1222 22233 5677777 9999999999887764

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.69  E-value=9.2e-16  Score=108.93  Aligned_cols=123  Identities=21%  Similarity=0.346  Sum_probs=71.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee----cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL----SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ..++|+|.|+.|+||||||+.|+++++...+    .-+.++...+.+...++..++-++....       .+-+......
T Consensus         3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~R-------fk~~k~~~~~   75 (216)
T COG1428           3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNR-------FKKIKKALSD   75 (216)
T ss_pred             cccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHH-------HHHHHHHhcc
Confidence            4578999999999999999999999996443    3445555554444445444444332211       1111111111


Q ss_pred             c---CCCeEEEeCC-C---------CCHHHHHHHHHh---------cCC-CCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           96 S---GNDKFLIDGF-P---------RNEENRAAFEAV---------TKI-EPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        96 ~---~~~~~i~dg~-~---------~~~~~~~~~~~~---------~~~-~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                      .   ..+.++-|.+ +         .+..+...+..+         ..+ .||++|||+|+.++..+|+.+|  ||+-+
T Consensus        76 ~~~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~R--gR~~E  152 (216)
T COG1428          76 KNNILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKR--GRPFE  152 (216)
T ss_pred             cccccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHh--CCCcc
Confidence            0   0222333320 0         011111111111         233 8999999999999999999999  66544

>PRK00625 shikimate kinase; Provisional

Probab=99.69  E-value=2.7e-15  Score=106.15  Aligned_cols=112  Identities=14%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC--CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      +.|+|+|+|||||||+++.|++++++++++.|+++.+.....  ....+.+.   ..++..........+... .  ...
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~---~~Ge~~fr~~E~~~l~~l-~--~~~   74 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ---AYGEEGFCREEFLALTSL-P--VIP   74 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH---HHCHHHHHHHHHHHHHHh-c--cCC
Confidence            359999999999999999999999999999999888753210  12222211   112222122222333322 2  123


Q ss_pred             eEEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          100 KFLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       100 ~~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+|..|  .+...+....+..     ...+|||++|++++.+|+..|
T Consensus        75 ~VIs~GGg~~~~~e~~~~l~~-----~~~Vv~L~~~~e~l~~Rl~~R  116 (173)
T PRK00625         75 SIVALGGGTLMIEPSYAHIRN-----RGLLVLLSLPIATIYQRLQKR  116 (173)
T ss_pred             eEEECCCCccCCHHHHHHHhc-----CCEEEEEECCHHHHHHHHhcC
Confidence            344333  3333333333322     357999999999999999988

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.69  E-value=5e-16  Score=107.22  Aligned_cols=113  Identities=20%  Similarity=0.360  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCch---HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN---GTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      +|+++|+|||||||+++.|++.+++.+++.|++...........   .......       ....+..++...+.  .+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~--~g~   71 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-------AYQILNAAIRKALR--NGN   71 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-------HHHHHHHHHHHHHH--TT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-------HHHHHHHHHHHHHH--cCC
Confidence            68999999999999999999999999999988666553211110   0000000       01122344444444  478


Q ss_pred             eEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          100 KFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+|+|...........+..+  ....+..+|+|+++.+++.+|+..|
T Consensus        72 ~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (143)
T PF13671_consen   72 SVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR  118 (143)
T ss_dssp             EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred             CceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence            89999877777666665554  2333557999999999999999999

...

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.69  E-value=4.4e-15  Score=107.01  Aligned_cols=166  Identities=15%  Similarity=0.192  Sum_probs=102.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCC-----C----------CHH--
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----V----------PSE--   83 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~--   83 (209)
                      +++|.|+|.|||||||+++.+++ +|+++++.|++.++.+.++..........++....     .          .+.  
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            46899999999999999999998 99999999999998877765444444443331111     0          000  


Q ss_pred             --HHHH----HHHH----HHHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           84 --VTIK----LLQK----AMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        84 --~~~~----~i~~----~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                        .+.+    ++..    .........+++|        ...|.+... ..++.+|++.||+++..+|+.+|  +  ..+
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e--------iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R--~--~~~  148 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLE--------IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKR--D--GLD  148 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEE--------chHHHhccccccCCEEEEEECCHHHHHHHHHhc--C--CCC
Confidence              0011    1111    1111112244444        234444212 22789999999999999999988  4  344


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      .+....++....    +..+.+...+  ++++++.+++++.+++.+.++....
T Consensus       149 ~e~~~~~~~~Q~----~~~ek~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~~  195 (201)
T COG0237         149 EEDAEARLASQR----DLEEKLALAD--VVIDNDGSIENLLEQIEKLLKELLG  195 (201)
T ss_pred             HHHHHHHHHhcC----CHHHHHhhcC--ChhhcCCCHHHHHHHHHHHHHHHHh
Confidence            444444433322    2222233223  5788888999999999888766443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.68  E-value=1.9e-15  Score=110.49  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=103.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc--------CC-CCCHHH-----
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE--------GK-IVPSEV-----   84 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~-----   84 (209)
                      +.+++|.|+|++||||||+++.|++ +|+++++.|.+.++.+..+......+...+..        +. .+....     
T Consensus         3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v   81 (208)
T PRK14731          3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV   81 (208)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence            3468899999999999999999986 99999999888877755443322222222211        00 011111     


Q ss_pred             -----------------HHHHHHHHHHhc--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           85 -----------------TIKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        85 -----------------~~~~i~~~~~~~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                                       +...+...+...  .+ ..+++|+ |...+.  .    ....+|.+|++.+|.+++.+|+.+|
T Consensus        82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~--~----~~~~~d~ii~V~a~~e~~~~Rl~~R  154 (208)
T PRK14731         82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFES--G----GDAGLDFIVVVAADTELRLERAVQR  154 (208)
T ss_pred             hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeec--C----chhcCCeEEEEECCHHHHHHHHHHc
Confidence                             112222222221  12 4555554 222211  1    1124689999999999999999988


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          145 NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                        ++  ...+.+.+|+..+.......    . .. -++|+++.+.+++.+++.++++...
T Consensus       155 --~~--~s~e~~~~Ri~~q~~~~~~~----~-~a-d~vI~N~g~~e~l~~~i~~~~~~~~  204 (208)
T PRK14731        155 --GM--GSREEIRRRIAAQWPQEKLI----E-RA-DYVIYNNGTLDELKAQTEQLYQVLL  204 (208)
T ss_pred             --CC--CCHHHHHHHHHHcCChHHHH----H-hC-CEEEECCCCHHHHHHHHHHHHHHHH
Confidence              43  35677888876543332221    2 22 2567777899999999998886644

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.68  E-value=3.5e-15  Score=101.69  Aligned_cols=171  Identities=17%  Similarity=0.240  Sum_probs=107.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--   96 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   96 (209)
                      .+++++|+|.||+||||+++.+.+.+ .+.+++.++++-+...... .-+. ++.+   ...|.+.+..+...+....  
T Consensus         3 ~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g-lve~-rD~~---Rklp~e~Q~~lq~~Aa~rI~~   77 (189)
T COG2019           3 GRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG-LVEH-RDEM---RKLPLENQRELQAEAAKRIAE   77 (189)
T ss_pred             CceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC-Cccc-HHHH---hcCCHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999 8899999999887744311 1111 1111   2445554444444333221  


Q ss_pred             CCCeEEEeCCC----------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh
Q 028388           97 GNDKFLIDGFP----------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE  165 (209)
Q Consensus        97 ~~~~~i~dg~~----------~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~  165 (209)
                      ....+|+|.+.          ..+.+  .+   ...+|+.++.|+++++++..|..+. .+.|+.+..+.+.++...-+-
T Consensus        78 ~~~~iivDtH~~IkTP~GylpgLP~~--Vl---~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~  152 (189)
T COG2019          78 MALEIIVDTHATIKTPAGYLPGLPSW--VL---EELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRA  152 (189)
T ss_pred             hhhceEEeccceecCCCccCCCCcHH--HH---HhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHH
Confidence            12338888532          11222  12   3467999999999999988888877 556677777777664332111


Q ss_pred             hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          166 SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      .  ...........+.++.+ +..+++....|...|..
T Consensus       153 a--A~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         153 A--AMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             H--HHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            1  11111122345666665 67899999998887753

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.68  E-value=2.8e-15  Score=108.82  Aligned_cols=165  Identities=16%  Similarity=0.190  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-----HHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----EVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------   85 (209)
                      ++|+|+|++||||||+++.|++ +|+++++.|++.++.+..+......+.+.+......++     ..+           
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4799999999999999999987 89999999999999888776666666665544322211     111           


Q ss_pred             -----------HHHHHHHHHhc--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           86 -----------IKLLQKAMEES--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        86 -----------~~~i~~~~~~~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                                 ...+...+...  .+ ..+++|. |...+.  .    ....+|.+||++||+++..+|+..|  .  ..
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-plL~e~--g----~~~~~D~vi~V~a~~e~ri~Rl~~R--~--g~  149 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-PLLVEK--G----LDRKMDLVVVVDVDVEERVRRLVEK--R--GL  149 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-eceeEc--C----ccccCCeEEEEECCHHHHHHHHHHc--C--CC
Confidence                       12222222211  12 3455552 211111  0    1125789999999999999999987  2  34


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +.+....++..+...    ... .... -++++++.+++++.+++..+++...
T Consensus       150 s~e~~~~ri~~Q~~~----~~k-~~~a-d~vI~N~g~~e~l~~~v~~~~~~~~  196 (200)
T PRK14734        150 DEDDARRRIAAQIPD----DVR-LKAA-DIVVDNNGTREQLLAQVDGLIAEIL  196 (200)
T ss_pred             CHHHHHHHHHhcCCH----HHH-HHhC-CEEEECcCCHHHHHHHHHHHHHHHH
Confidence            556666666544332    111 1222 2578888899999999998876543

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.67  E-value=7.3e-15  Score=104.64  Aligned_cols=172  Identities=21%  Similarity=0.298  Sum_probs=101.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc----CCch--HHHHHHHHH--------------cCCCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSEN--GTMIQNMIK--------------EGKIV   80 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~----~~~~--~~~~~~~~~--------------~~~~~   80 (209)
                      .++|.|-||.||||||+|+.||++||+.|+++|-++|.....    +..+  ...+.....              ++...
T Consensus         4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv   83 (222)
T COG0283           4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV   83 (222)
T ss_pred             ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence            488999999999999999999999999999999999876433    1110  111111111              11112


Q ss_pred             CHHHH-----------------HHHHHHHHHhc-C-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH
Q 028388           81 PSEVT-----------------IKLLQKAMEES-G-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI  141 (209)
Q Consensus        81 ~~~~~-----------------~~~i~~~~~~~-~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~  141 (209)
                      +..+.                 +..+....+.. . +.++|+||--        .-....+..++-|||++++++..+|.
T Consensus        84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRD--------iGTvV~PdA~lKiFLtAS~e~RA~RR  155 (222)
T COG0283          84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRD--------IGTVVFPDAELKIFLTASPEERAERR  155 (222)
T ss_pred             hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCC--------CcceECCCCCeEEEEeCCHHHHHHHH
Confidence            11111                 11221111111 1 3668888731        01113456788999999999977776


Q ss_pred             hhc--cCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          142 LNR--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       142 ~~r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      -+.  ..+.... .+.+.+.+.  .+.+..+.... +....+.+++|+ +.+++|++++|..+++.
T Consensus       156 ~~q~~~~g~~~~-~e~ll~eI~~RD~~D~~R~~~P-Lk~A~DA~~iDTs~msieeVv~~il~~~~~  219 (222)
T COG0283         156 YKQLQAKGFSEV-FEELLAEIKERDERDSNRAVAP-LKPAEDALLLDTSSLSIEEVVEKILELIRQ  219 (222)
T ss_pred             HHHHHhccCcch-HHHHHHHHHHhhhccccCcCCC-CcCCCCeEEEECCCCcHHHHHHHHHHHHHH
Confidence            655  2222222 455544443  34444433322 233445667776 77999999999998873

>PRK12338 hypothetical protein; Provisional

Probab=99.67  E-value=6.8e-15  Score=112.36  Aligned_cols=180  Identities=16%  Similarity=0.194  Sum_probs=103.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC--Cch----HHHHHHHH---HcCCCC-C------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG--SEN----GTMIQNMI---KEGKIV-P------   81 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~--~~~----~~~~~~~~---~~~~~~-~------   81 (209)
                      |.+|.+|+|+|+|||||||+|+.|++++|+.++..+|.+++.+...  .++    .....+.+   ...... +      
T Consensus         1 m~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~   80 (319)
T PRK12338          1 MRKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC   80 (319)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence            4568999999999999999999999999999997789999876651  111    11111111   111111 1      


Q ss_pred             ------HHHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCC
Q 028388           82 ------SEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDD  151 (209)
Q Consensus        82 ------~~~~~~~i~~~~~~--~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~  151 (209)
                            .+.+...+...+..  .++.++|+||............. ....+-..++|..+.+...+|...|  ...|.  
T Consensus        81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~--  157 (319)
T PRK12338         81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKRAMEIKRG--  157 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHhhhccCCc--
Confidence                  11222333333332  25889999998665554442111 1122334666678999999999998  22222  


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                        ....+.+...+....-+.+...+. .+.++++. +.+++++.+.+.|....
T Consensus       158 --~~~l~~f~~Ir~Iq~~l~~~A~e~-~VpvI~N~-did~Tv~~ile~I~e~s  206 (319)
T PRK12338        158 --GKQLEYFRENRIIHDHLVEQAREH-NVPVIKND-DIDCTVKKMLSYIREVC  206 (319)
T ss_pred             --hhhhhChHHHHHHHHHHHHhHhhC-CCceeCCC-cHHHHHHHHHHHHHhhe
Confidence              122222222222222222322222 45555554 88999999988886543

>PLN02422 dephospho-CoA kinase

Probab=99.67  E-value=6.6e-15  Score=108.20  Aligned_cols=164  Identities=20%  Similarity=0.155  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (209)
                      ++|+|+|.+||||||+++.|+ ++|+++++.|++.++.+..+......+.+.++.     ...+....+           
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            379999999999999999998 689999999999999988766544444443321     111221111           


Q ss_pred             -----------HHHHHHHHHh---cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           86 -----------IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        86 -----------~~~i~~~~~~---~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                                 ...+...+..   .....+++|. |...+.  .    ....+|.+|+++||+++..+|+..|  .  ..
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E~--~----~~~~~D~vI~V~a~~e~ri~RL~~R--~--g~  149 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFET--K----MDKWTKPVVVVWVDPETQLERLMAR--D--GL  149 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhhc--c----hhhhCCEEEEEECCHHHHHHHHHHc--C--CC
Confidence                       1112221111   1134666773 222111  1    1224789999999999999999987  2  34


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.+.+.+++.....    ... .....+ ++|+++++.+++..++.++++..
T Consensus       150 s~eea~~Ri~~Q~~----~ee-k~~~AD-~VI~N~gs~e~L~~qv~~ll~~l  195 (232)
T PLN02422        150 SEEQARNRINAQMP----LDW-KRSKAD-IVIDNSGSLEDLKQQFQKVLEKI  195 (232)
T ss_pred             CHHHHHHHHHHcCC----hhH-HHhhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            55666666533221    111 122233 57777779999999998777543

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.65  E-value=4.8e-15  Score=107.10  Aligned_cols=164  Identities=15%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT------------   85 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------   85 (209)
                      +|.|+|++||||||+++.|++ +|+.+++.|.+.+..+..+......+.+.++..     ..+....+            
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            489999999999999999965 799999999999988776665555454443221     11111111            


Q ss_pred             ----------HHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 ----------IKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 ----------~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                ...+...+... .+..+|+|. |...+.  .    ....+|.+|++++|++++.+|+..|  .  ..+.+
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~r~~RL~~R--~--g~s~e  148 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV-PLLFET--D----AYTLCDATVTVDSDPEESILRTISR--D--GMKKE  148 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe-eeeeEc--C----chhhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence                      22222222222 234555563 322221  1    1124689999999999999999987  2  33556


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+..++..-  .  +..+. ....+ ++++++.+.+++..++.++++...
T Consensus       149 ~a~~ri~~Q--~--~~~~k-~~~aD-~vI~N~~~~~~l~~~v~~l~~~~~  192 (196)
T PRK14732        149 DVLARIASQ--L--PITEK-LKRAD-YIVRNDGNREGLKEECKILYSTLL  192 (196)
T ss_pred             HHHHHHHHc--C--CHHHH-HHhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence            666665441  1  22222 23333 466677799999999998876543

>PLN02199 shikimate kinase

Probab=99.65  E-value=5.4e-14  Score=105.80  Aligned_cols=168  Identities=15%  Similarity=0.179  Sum_probs=102.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      +...|+++|++||||||+++.|++.+|+++++.|.++.+.+. +......+..   .|+....+....++.+...   ..
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~sI~eIf~~---~GE~~FR~~E~e~L~~L~~---~~  173 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTSVAEIFVH---HGENFFRGKETDALKKLSS---RY  173 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCCHHHHHHH---hCHHHHHHHHHHHHHHHHh---cC
Confidence            456899999999999999999999999999999998888632 3333332221   2333333444455555433   22


Q ss_pred             eEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC---cHHHH---HHHHHHHHhhchh
Q 028388          100 KFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDD---NVETI---RKRFKVFLESSLP  169 (209)
Q Consensus       100 ~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~---~~~~~---~~~~~~~~~~~~~  169 (209)
                      .+|+.   |.+.....+..+.      ...+|||++|++++.+|+... ...|+..   ..+.+   ...+....+...+
T Consensus       174 ~~VIStGGG~V~~~~n~~~L~------~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~p  247 (303)
T PLN02199        174 QVVVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGE  247 (303)
T ss_pred             CEEEECCCcccCCHHHHHHHh------CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHH
Confidence            34444   2333333333322      247999999999999999962 1234332   12211   2455555555555


Q ss_pred             HHHHHhhcCcEEEE------------cCCCChHHHHHHHHHhcCcch
Q 028388          170 VVQYYEAKGKVRKI------------DAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       170 ~~~~~~~~~~~~~i------------d~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +   |.. ..+.+.            ..+.++++++.+|...+.+..
T Consensus       248 l---Y~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l  290 (303)
T PLN02199        248 A---YTN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFL  290 (303)
T ss_pred             H---HHh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            5   554 434333            246789999988888776544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.65  E-value=5.6e-14  Score=100.26  Aligned_cols=163  Identities=12%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-------HHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLLQK   91 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~   91 (209)
                      +++|+++|+|||||||+++.|++.++..  +++.|++.... ............+-......+.       ......+..
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   80 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL-PLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA   80 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhc-ChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence            4689999999999999999999998654  44666554432 2100000000000000000111       112233333


Q ss_pred             HHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           92 AMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      .+.  .+..+|+|.... .......+..+ ...+.+.|+|.||.+++.+|..+|  +...  .. +...  .+..     
T Consensus        81 ~l~--~G~~VIvD~~~~~~~~~r~~~~~~-~~~~~~~v~l~~~~~~l~~R~~~R--~~~~--~~-~~~~--~~~~-----  145 (175)
T cd00227          81 MAR--AGANVIADDVFLGRAALQDCWRSF-VGLDVLWVGVRCPGEVAEGRETAR--GDRV--PG-QARK--QARV-----  145 (175)
T ss_pred             HHh--CCCcEEEeeeccCCHHHHHHHHHh-cCCCEEEEEEECCHHHHHHHHHhc--CCcc--ch-HHHH--HHHH-----
Confidence            333  488999997544 33333444442 223457999999999999999988  4221  11 1110  0110     


Q ss_pred             HHHHhhcCcEEEEcCC-CChHHHHHHHHHhcC
Q 028388          171 VQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~  201 (209)
                        ........+.+|++ .++++++++|.+.|.
T Consensus       146 --~~~~~~~dl~iDts~~s~~e~a~~i~~~l~  175 (175)
T cd00227         146 --VHAGVEYDLEVDTTHKTPIECARAIAARVQ  175 (175)
T ss_pred             --hcCCCcceEEEECCCCCHHHHHHHHHHhcC
Confidence              01112234678875 589999999988763

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.64  E-value=8.3e-15  Score=113.27  Aligned_cols=167  Identities=17%  Similarity=0.273  Sum_probs=96.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      .++.+..|+|+|+|||||||+++.|++.+|+++++.|..+.+..  +......+..   .+...........+...+.. 
T Consensus       129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G~~i~ei~~~---~G~~~fr~~e~~~l~~ll~~-  202 (309)
T PRK08154        129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--GLSVSEIFAL---YGQEGYRRLERRALERLIAE-  202 (309)
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--CCCHHHHHHH---HCHHHHHHHHHHHHHHHHhh-
Confidence            34567799999999999999999999999999999987665541  2222221111   12211223334445444432 


Q ss_pred             CCCeEEEeCCC--CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC----CCcHHHHHHHHHHHHhhchhH
Q 028388           97 GNDKFLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE----DDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        97 ~~~~~i~dg~~--~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      ....||-.|..  ........+..     ..++|||++|++++.+|+..|...++    ....+.+.+    ......+.
T Consensus       203 ~~~~VI~~Ggg~v~~~~~~~~l~~-----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~----~~~~R~~~  273 (309)
T PRK08154        203 HEEMVLATGGGIVSEPATFDLLLS-----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRR----ILASREPL  273 (309)
T ss_pred             CCCEEEECCCchhCCHHHHHHHHh-----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHH----HHHHHHHH
Confidence            22334433321  12222222222     34799999999999999988721222    112233332    22222333


Q ss_pred             HHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCcc
Q 028388          171 VQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       171 ~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~~  203 (209)
                         |.. .++ ++|+ ..+++++.++|...+...
T Consensus       274 ---y~~-ad~-~I~t~~~s~ee~~~~I~~~l~~~  302 (309)
T PRK08154        274 ---YAR-ADA-VVDTSGLTVAQSLARLRELVRPA  302 (309)
T ss_pred             ---HHh-CCE-EEECCCCCHHHHHHHHHHHHHHH
Confidence               322 334 4555 559999999999888553

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=99.64  E-value=6.5e-15  Score=106.78  Aligned_cols=115  Identities=22%  Similarity=0.329  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHh--------HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--------DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      +|+|+|++||||||+++.|++++++.++...        .+++..+.+...+....+.++.       ....+.+.+.+.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~-------~~r~~~~~~~~~   73 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFL-------LSRLKQYKDALE   73 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHH-------HHHHHHHHHHHh
Confidence            4899999999999999999999887554331        1222222110001111111110       001122222221


Q ss_pred             h-cCCCeEEEeCCCCCHH---------------HHH---HHHH-h--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           95 E-SGNDKFLIDGFPRNEE---------------NRA---AFEA-V--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        95 ~-~~~~~~i~dg~~~~~~---------------~~~---~~~~-~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      . ..+..+|+|+++.+-.               ...   .+.. +  ....|+++|||+++++++.+|+.+|
T Consensus        74 ~~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R  145 (193)
T cd01673          74 HLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKR  145 (193)
T ss_pred             hcccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence            1 1478999998765421               011   1111 1  2467999999999999999999988

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.64  E-value=1.7e-14  Score=107.02  Aligned_cols=163  Identities=15%  Similarity=0.126  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (209)
                      .+|.|+|.+||||||+++.|++.+|+++++.|.+.++.+..+......+.+.+..     ...+....+           
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999999999999999999877665544444443321     112222111           


Q ss_pred             -----------HHHHHHHHH------------hcCCCeEEEeCCCCCHHHHHHHHHhc--CCCCcEEEEEecCHHHHHHH
Q 028388           86 -----------IKLLQKAME------------ESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERR  140 (209)
Q Consensus        86 -----------~~~i~~~~~------------~~~~~~~i~dg~~~~~~~~~~~~~~~--~~~~~~~i~L~~~~~~~~~R  140 (209)
                                 ...+...+.            ......+|+|. |       .+.+..  ...+|.++++.+|.++..+|
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-P-------LL~E~~~~~~~~D~iv~V~a~~e~ri~R  153 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-P-------TLFETKTFTYFVSASVVVSCSEERQIER  153 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-c-------hhhccCchhhcCCeEEEEECCHHHHHHH
Confidence                       111112221            11123677874 2       222211  12468999999999999999


Q ss_pred             HhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388          141 ILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       141 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~ee~~~~i~~~i~~  202 (209)
                      +..|    ...+.+.+.+|+..  +.  +..+ .....+ ++|+++  ++.+++..++.+++..
T Consensus       154 L~~R----~g~s~eea~~Ri~~--Q~--~~~e-k~~~aD-~VI~N~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        154 LRKR----NGFSKEEALQRIGS--QM--PLEE-KRRLAD-YIIENDSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             HHHc----CCCCHHHHHHHHHh--CC--CHHH-HHHhCC-EEEECCCCCCHHHHHHHHHHHHHH
Confidence            9977    23456777777644  11  1122 223333 455566  7999999999877643

>TIGR00152 dephospho-CoA kinase

Probab=99.64  E-value=1.7e-14  Score=104.15  Aligned_cols=158  Identities=18%  Similarity=0.250  Sum_probs=99.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCH---------------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPS---------------   82 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---------------   82 (209)
                      +|+|+|.+||||||+++.|++..++.+++.|.+.++.+..+......+.+.+..     ...+..               
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999888999999999999887766544444433321     111111               


Q ss_pred             -------HHHHHHHHHHHHhcC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           83 -------EVTIKLLQKAMEESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        83 -------~~~~~~i~~~~~~~~--~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                             +.+...+.+.+....  +..++++.. ...+.  .+    ...+|.++++++|.+++.+|+..|  .  ..+.
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~p-ll~e~--~~----~~~~D~vv~V~~~~~~~~~Rl~~R--~--~~s~  149 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVP-LLFEN--KL----RSLCDRVIVVDVSPQLQLERLMQR--D--NLTE  149 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEch-HhhhC--Cc----HHhCCEEEEEECCHHHHHHHHHHc--C--CCCH
Confidence                   111233333333222  246666642 11111  11    124678999999999999999987  3  4455


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHH
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK  197 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~  197 (209)
                      +.+.+++....    +..+. ..... ++|+++.+.+++..++.
T Consensus       150 ~~~~~r~~~q~----~~~~~-~~~ad-~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       150 EEVQKRLASQM----DIEER-LARAD-DVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHHHHHHhcC----CHHHH-HHhCC-EEEECCCCHHHHHHHHh
Confidence            66776655532    22221 22222 56777779999988875

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.63  E-value=4.7e-14  Score=106.19  Aligned_cols=160  Identities=19%  Similarity=0.320  Sum_probs=93.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +|+|+|+|||||||+|+.|++.++     ..+++. |.++..+..   +........       .+....++...+.  .
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~---~~~~~e~~~-------~~~~~~~i~~~l~--~   67 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPV---WKEKYEEFI-------RDSTLYLIKTALK--N   67 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHH---hhHHhHHHH-------HHHHHHHHHHHHh--C
Confidence            589999999999999999999883     344545 445443211   000001111       1222344555554  3


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           98 NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      +..+|+|+.+.....+..+...  ....+..+|||++|.+++.+|...|  +.. .+.+.+...+..|..   |... +.
T Consensus        68 ~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R--~~~-~~~~~i~~l~~r~e~---p~~~-~~  140 (249)
T TIGR03574        68 KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER--GEK-IPNEVIKDMYEKFDE---PGTK-YS  140 (249)
T ss_pred             CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC--CCC-CCHHHHHHHHHhhCC---CCCC-CC
Confidence            5779999876444443333321  3345667999999999999999988  432 233333332222221   2111 11


Q ss_pred             hcCcEEEEcCCC--ChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDAAK--PVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~~~--~~ee~~~~i~~~i~~  202 (209)
                      -....+.+|++.  +.+++++.|...+..
T Consensus       141 wd~~~~~vd~~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       141 WDLPDLTIDTTKKIDYNEILEEILEISEN  169 (249)
T ss_pred             ccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence            012567888754  678999999887643

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.63  E-value=2.1e-14  Score=118.67  Aligned_cols=170  Identities=18%  Similarity=0.240  Sum_probs=104.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      .+-..|++.|+|||||||+++.|++.+|+++++.|+.+.+..      +..+.+.+ ..++..+.+...+++......  
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~--   75 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED--   75 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            345679999999999999999999999999999999887762      22233322 234444445555556654432  


Q ss_pred             CCeEE-EeC-CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           98 NDKFL-IDG-FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        98 ~~~~i-~dg-~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ...|| +-| .+........+.. .......+|||++|++++.+|+..+ ..|+.... .-.+++...++...++   |+
T Consensus        76 ~~~VIs~GGG~v~~~~n~~~L~~-~~~~~g~vv~L~~~~~~l~~Rl~~~-~~RPll~~-~~~~~~~~l~~~R~~~---Y~  149 (542)
T PRK14021         76 FDGIFSLGGGAPMTPSTQHALAS-YIAHGGRVVYLDADPKEAMERANRG-GGRPMLNG-DANKRWKKLFKQRDPV---FR  149 (542)
T ss_pred             CCeEEECCCchhCCHHHHHHHHH-HHhcCCEEEEEECCHHHHHHHHhCC-CCCCCCCC-CcHHHHHHHHHHHHHH---HH
Confidence            22233 222 4444555554432 1112247999999999999999754 22333211 1123344444444444   55


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...++.+.....++++++++|.+.+..
T Consensus       150 ~~Ad~~i~~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        150 QVANVHVHTRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             hhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence            544454444567999999999887754

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.62  E-value=1.2e-14  Score=106.70  Aligned_cols=176  Identities=15%  Similarity=0.228  Sum_probs=93.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      +.+|.+|.|.|++|||||||++.|++.++   ..+++.|+++...- . ..........+........+.+.+.+.....
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   80 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQS-H-LSFEERVKTNYDHPDAFDHDLLIEHLKALKA   80 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcc-c-CCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence            35789999999999999999999999983   45677777654220 0 0000000000111112222333333333221


Q ss_pred             h----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           95 E----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        95 ~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                      .                      .....+|+||.......  .    ....+|++||+++|.+++.+|...|........
T Consensus        81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~--~----~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~  154 (209)
T PRK05480         81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDE--R----LRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRS  154 (209)
T ss_pred             CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCch--h----HhhhhceeEEEeCChhHHHHHHHhhcchhcCCC
Confidence            0                      11346788986432211  1    112367899999999999999888821111223


Q ss_pred             HHHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCC----CChHHHHHHHHHhcCc
Q 028388          153 VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAA----KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~----~~~ee~~~~i~~~i~~  202 (209)
                      .+.+..++.. .........+.+....+ ++++++    .+.+++.++|..++.+
T Consensus       155 ~e~~~~~~~~~~~~~~~~~i~~~~~~AD-~vI~~~~~~~~~~~~l~~~i~~~~~~  208 (209)
T PRK05480        155 LESVINQYLSTVRPMHLQFIEPSKRYAD-IIIPEGGKNRVAIDILKAKIRQLLEK  208 (209)
T ss_pred             HHHHHHHHHHhhhhhHHhhccHhhccee-EEecCCCcchHHHHHHHHHHHHHhhc
Confidence            3444333222 11111111122233334 455533    3788888888877654

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.62  E-value=1.7e-14  Score=116.98  Aligned_cols=176  Identities=19%  Similarity=0.281  Sum_probs=100.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHcCC-------------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGK-------------   78 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~-------------   78 (209)
                      +.++++|.|.|++||||||+++.|+++||+.+++.|.+++...    ..+-..  ...+...+.+-.             
T Consensus       281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i  360 (512)
T PRK13477        281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRV  360 (512)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceE
Confidence            4578899999999999999999999999999999999999752    111111  111111111000             


Q ss_pred             -----CC-----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388           79 -----IV-----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (209)
Q Consensus        79 -----~~-----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~  135 (209)
                           .+                 ....++..+....++. ...++|+||.-        .-....+..++.|||+++++
T Consensus       361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRD--------igtvV~P~AdlKIfL~As~e  432 (512)
T PRK13477        361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRD--------IGTHVFPDAELKIFLTASVE  432 (512)
T ss_pred             EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccc--------ceeEEcCCCCEEEEEECCHH
Confidence                 00                 0111122222221111 23468888741        00002345789999999999


Q ss_pred             HHHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          136 EMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       136 ~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      ++.+|+..+  .++-.....+.+.+.+..  +.+..+.....|...+ .+.+|+ +.+++++++.|.+.+.+
T Consensus       433 vRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~d-ai~IDTs~lsieeVv~~Il~~i~~  503 (512)
T PRK13477        433 ERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADD-AIELITDGLSIEEVVDKIIDLYRD  503 (512)
T ss_pred             HHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCC-eEEEECCCCCHHHHHHHHHHHHHH
Confidence            999987655  122212223444443322  2222222222233223 356665 67999999999998865

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.62  E-value=3.1e-14  Score=98.51  Aligned_cols=175  Identities=21%  Similarity=0.343  Sum_probs=109.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------H
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------I   86 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   86 (209)
                      +.+..+|++.|..+|||||.+..|.+.++-..- ...+.+-. ..-+..+..+..++.+....++...           .
T Consensus         2 ~~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~-~~~l~~FP-~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~   79 (208)
T KOG3327|consen    2 MIRGALIVLEGLDRSGKSTQCGKLVESLIPGLD-PAELLRFP-ERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV   79 (208)
T ss_pred             CCCccEEeeeccccCCceeehhHHHHHHHhccC-hHHhhhcc-hhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH
Confidence            457789999999999999999999988843221 11222211 2234455555566655555554433           4


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCC-----------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRN-----------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~-----------~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~  155 (209)
                      +.+...+.  .+..+|+|.|.++           .+|...+.. ....||+++||+++++++.+| .++  |...-....
T Consensus        80 ~~i~e~l~--kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~-gL~KPDlvlfL~v~p~~~a~r-ggf--G~Erye~v~  153 (208)
T KOG3327|consen   80 SLIKEKLA--KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDV-GLPKPDLVLFLDVSPEDAARR-GGF--GEERYETVA  153 (208)
T ss_pred             HHHHHHHh--cCCeEEEecceecchhhhhhcCCCcchhhCCcc-CCCCCCeEEEEeCCHHHHHHh-cCc--chhHHHHHH
Confidence            45555555  4778999987655           234444444 778999999999999995444 444  222112233


Q ss_pred             HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      +.++...+++...     -.+...+.++|++.+++++.+.|...+.....
T Consensus       154 fqekv~~~~q~l~-----r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~  198 (208)
T KOG3327|consen  154 FQEKVLVFFQKLL-----RKEDLNWHVVDASKSVEKVHQQVRSLVENVLS  198 (208)
T ss_pred             HHHHHHHHHHHHH-----hccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence            3443333333211     01344789999999999999999877765443

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.62  E-value=2.6e-14  Score=95.58  Aligned_cols=107  Identities=19%  Similarity=0.246  Sum_probs=76.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      .+.|+|+|.||+||||+|..||+.+++.++..+++.++--.     .....+-+ .--.+..+-+...++..+.+   .+
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y-~c~i~DEdkv~D~Le~~m~~---Gg   77 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEY-KCHILDEDKVLDELEPLMIE---GG   77 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhcccccc-cCccccHHHHHHHHHHHHhc---CC
Confidence            35689999999999999999999999999999998876411     11111111 11244556678888888883   77


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .|+|-+.     ...|.+   ..+|+++.|.||.+++..|+..|
T Consensus        78 ~IVDyHg-----Cd~Fpe---rwfdlVvVLr~~~s~LY~RL~sR  113 (176)
T KOG3347|consen   78 NIVDYHG-----CDFFPE---RWFDLVVVLRTPNSVLYDRLKSR  113 (176)
T ss_pred             cEEeecc-----cCccch---hheeEEEEEecCchHHHHHHHHc
Confidence            8888431     111111   24678999999999999999999

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.62  E-value=4.7e-14  Score=101.60  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHc-CCchHHHHHHHHHcCCC----------CCHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKS-GSENGTMIQNMIKEGKI----------VPSEVTI   86 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~   86 (209)
                      .+++|.||+||||||+++.|+..++..++..+..+...    ... -....+.+......+..          +-..  .
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~--~   80 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVG--I   80 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCc--H
Confidence            57999999999999999999998875554433322211    000 00111221222222211          1101  1


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                       -++..+.  .+..+|++|.   ........+ ....+..+|||++|.+++.+|+..|  ++.  ..+.+.+++....  
T Consensus        81 -~~~~~l~--~g~~VI~~G~---~~~~~~~~~-~~~~~~~vi~l~~s~e~l~~RL~~R--~~~--~~~~i~~rl~r~~--  147 (186)
T PRK10078         81 -EIDLWLH--AGFDVLVNGS---RAHLPQARA-RYQSALLPVCLQVSPEILRQRLENR--GRE--NASEINARLARAA--  147 (186)
T ss_pred             -HHHHHHh--CCCEEEEeCh---HHHHHHHHH-HcCCCEEEEEEeCCHHHHHHHHHHh--CCC--CHHHHHHHHHHhh--
Confidence             1444444  3677888876   211122233 3334556899999999999999977  433  3455666653221  


Q ss_pred             chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                            .+. ....+++|++.++++++++|.+++...
T Consensus       148 ------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~  177 (186)
T PRK10078        148 ------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLS  177 (186)
T ss_pred             ------hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence                  122 345678888889999999999988653

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.1e-14  Score=95.77  Aligned_cols=163  Identities=17%  Similarity=0.201  Sum_probs=103.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCHHHHHHH---HHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKL---LQK   91 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~   91 (209)
                      +.+-+|++.|++||||||++..|+++|++.+++.||+....-    ..+..+.          ....++|+.++   +..
T Consensus        10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn----------D~DR~pWL~~i~~~~~~   79 (191)
T KOG3354|consen   10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN----------DDDRWPWLKKIAVELRK   79 (191)
T ss_pred             CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC----------cccccHHHHHHHHHHHH
Confidence            345589999999999999999999999999999988754431    1122111          11112333222   222


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHh-c----CCC---CcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           92 AMEESGNDKFLIDGFPRNEENRAAFEAV-T----KIE---PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~----~~~---~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                      .+.  .++++|+...-.....++.+... .    ...   --.+|+|.++.+++.+|+.+|  ...-.+.+-+..++...
T Consensus        80 ~l~--~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R--~gHFMp~~lleSQf~~L  155 (191)
T KOG3354|consen   80 ALA--SGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKR--KGHFMPADLLESQFATL  155 (191)
T ss_pred             Hhh--cCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhc--ccccCCHHHHHHHHHhc
Confidence            222  57889987654444444444431 0    011   234999999999999999999  66667777776654443


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      ..   |.    .+..+++.|+.. .++|+++..|.+.+..
T Consensus       156 E~---p~----~~e~div~isv~~~~~e~iv~tI~k~~~~  188 (191)
T KOG3354|consen  156 EA---PD----ADEEDIVTISVKTYSVEEIVDTIVKMVAL  188 (191)
T ss_pred             cC---CC----CCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence            22   11    112257778764 8999999998877643

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=6.7e-15  Score=98.38  Aligned_cols=155  Identities=19%  Similarity=0.217  Sum_probs=99.1

Q ss_pred             EcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH---HHHHHHHHHHHhc--CCCeE
Q 028388           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE---VTIKLLQKAMEES--GNDKF  101 (209)
Q Consensus        27 ~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~--~~~~~  101 (209)
                      .|.+||||||+++.|++++++.+++.|++.-..--.          .+..+..+.++   -+...+..++...  .+..+
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~----------KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~   70 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE----------KMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV   70 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH----------HHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence            389999999999999999999999998875433111          11222222221   1133333333321  23445


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEE
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (209)
                      |+-..-.....++.+..  ...--.+|||+.+.+++.+|+..|  ..+-.+...+..++.....   |     .....++
T Consensus        71 vi~CSALKr~YRD~LR~--~~~~~~Fv~L~g~~~~i~~Rm~~R--~gHFM~~~ll~SQfa~LE~---P-----~~de~vi  138 (161)
T COG3265          71 VIACSALKRSYRDLLRE--ANPGLRFVYLDGDFDLILERMKAR--KGHFMPASLLDSQFATLEE---P-----GADEDVL  138 (161)
T ss_pred             EEecHHHHHHHHHHHhc--cCCCeEEEEecCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHhcC---C-----CCCCCEE
Confidence            55433333333344443  222245999999999999999999  7777777777765544322   1     1112689


Q ss_pred             EEcCCCChHHHHHHHHHhcCcc
Q 028388          182 KIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       182 ~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .||.+.+++++++++..+++..
T Consensus       139 ~idi~~~~e~vv~~~~~~l~~~  160 (161)
T COG3265         139 TIDIDQPPEEVVAQALAWLKEG  160 (161)
T ss_pred             EeeCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999988753

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.61  E-value=3e-14  Score=99.16  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--c
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--S   96 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~   96 (209)
                      +|+|+|+|||||||+|+.|++.+++.+++.|.+.....    ..+.....          .....+...+.......  .
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~   70 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND----------EDRWPWLQALTDALLAKLAS   70 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc----------cchhhHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999877665321    11111100          00011111111111111  2


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+..+|+|...........+..+....+..+|||++|.+++.+|+..|
T Consensus        71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R  118 (150)
T cd02021          71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR  118 (150)
T ss_pred             CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence            467889997655555555555522124456999999999999999998

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=99.60  E-value=1.7e-13  Score=100.73  Aligned_cols=175  Identities=16%  Similarity=0.247  Sum_probs=100.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec---HhHHHHH--------HHHc--CCchHHHHHHHHHcCC--------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS---AGDLLRA--------EIKS--GSENGTMIQNMIKEGK--------   78 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~---~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~--------   78 (209)
                      ..++|++.|+.|||||++|+.||++||+.++.   .|+++-.        ...+  +....-.+..+..+..        
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q  149 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQ  149 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHH
Confidence            45799999999999999999999999976654   4443322        1111  0111111222222110        


Q ss_pred             ----CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCH-H-----------------HHHHHHHh---cCCCCcEEEEEecC
Q 028388           79 ----IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE-E-----------------NRAAFEAV---TKIEPEFVLFFDCS  133 (209)
Q Consensus        79 ----~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~-~-----------------~~~~~~~~---~~~~~~~~i~L~~~  133 (209)
                          .........+++..+.  .+++||++..|.+- -                 ....+.+.   ....|.++|||+.|
T Consensus       150 ~r~y~~R~~QY~dAL~HiL~--TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P  227 (393)
T KOG3877|consen  150 DRIYNCRFDQYLDALAHILN--TGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP  227 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHh--cCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence                0011222455555555  69999999877651 1                 11111111   45679999999999


Q ss_pred             HHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh-HHHHHhhcCcEEEEcC--CCChHHHHHHHHH
Q 028388          134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEAKGKVRKIDA--AKPVAEVFDAVKA  198 (209)
Q Consensus       134 ~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~id~--~~~~ee~~~~i~~  198 (209)
                      .+.+.+|+++|  +.+++..-.-...+....+..+. .+..++....++..|.  .++-+.+++.|..
T Consensus       228 v~~v~~~Ik~r--g~~~Eik~~s~aYL~diE~~YK~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIEr  293 (393)
T KOG3877|consen  228 VNKVLENIKRR--GNTDEIKTVSEAYLKDIEESYKDSFLREYSNHSEILAYDWTKPGDTDAVVEDIER  293 (393)
T ss_pred             cHHHHHHHHhc--CCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhheeeeecccCCCchhHHHhhhh
Confidence            99999999999  55544321111222222222222 2444566667788886  4466777777754

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.60  E-value=5.5e-14  Score=100.83  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH--------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------   83 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------   83 (209)
                      .+|++|+|+||+|||||||++.|.+++.-.+.+.....|...++   +..    ..+.+...+..+.++...        
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG   81 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG   81 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence            46889999999999999999999988743334443444432111   000    113333333333333221        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                      ...+.++..+.  .++.+|+|-.   ..-...+.. .....-++||+.+| .+++.+|+.+|  +  ..+.+.+.+++..
T Consensus        82 t~~~~i~~~~~--~g~~~i~d~~---~~g~~~l~~-~~~~~~~~Ifi~pps~e~l~~RL~~R--~--~~s~e~i~~Rl~~  151 (186)
T PRK14737         82 TPKAFIEDAFK--EGRSAIMDID---VQGAKIIKE-KFPERIVTIFIEPPSEEEWEERLIHR--G--TDSEESIEKRIEN  151 (186)
T ss_pred             CcHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hCCCCeEEEEEECCCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence            12555666665  5889999953   333334444 32222268888885 68899999877  3  3456777777765


Q ss_pred             HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ....    .+ +....+. +|+++ +++++..++...|..
T Consensus       152 ~~~e----~~-~~~~~D~-vI~N~-dle~a~~ql~~ii~~  184 (186)
T PRK14737        152 GIIE----LD-EANEFDY-KIIND-DLEDAIADLEAIICG  184 (186)
T ss_pred             HHHH----Hh-hhccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence            3321    11 2222334 44445 899999999988765

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.59  E-value=3.9e-14  Score=101.35  Aligned_cols=128  Identities=19%  Similarity=0.228  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH------------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT------------   85 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------   85 (209)
                      +|+|+|+|||||||+++.|++ +|+++++.|.+.++.+..+......+...+...     ..+....+            
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999998 999999999999998777666655555554321     11111111            


Q ss_pred             ----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 ----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 ----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                ...+...+..... ..+|+|. |...+.  .+    ...+|.++++++|+++..+|+..|  .  ....+
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~----~~~~D~vv~V~a~~~~ri~Rl~~R--d--~~s~~  148 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GL----EKLVDRVIVVDAPPEIQIERLMKR--D--GLSEE  148 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--Cc----HHhCCeEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence                      2222222222222 4566674 211111  11    124689999999999999999987  2  34556


Q ss_pred             HHHHHHHH
Q 028388          155 TIRKRFKV  162 (209)
Q Consensus       155 ~~~~~~~~  162 (209)
                      .+.+++..
T Consensus       149 ~~~~r~~~  156 (179)
T cd02022         149 EAEARIAS  156 (179)
T ss_pred             HHHHHHHh
Confidence            66666544

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK07261 topology modulation protein; Provisional

Probab=99.59  E-value=8.1e-15  Score=103.97  Aligned_cols=99  Identities=18%  Similarity=0.240  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|+|+|||||||+|+.|++.++.++++.|.+....     .           ....+.+.....+...+.+   ..+
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~---~~w   61 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-----N-----------WQERDDDDMIADISNFLLK---HDW   61 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-----c-----------cccCCHHHHHHHHHHHHhC---CCE
Confidence            35899999999999999999999999999887654211     0           1222344455666666552   349


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      |+||.+........+.     ..|.+|+|++|..++..|+.+|
T Consensus        62 Iidg~~~~~~~~~~l~-----~ad~vI~Ld~p~~~~~~R~lkR   99 (171)
T PRK07261         62 IIDGNYSWCLYEERMQ-----EADQIIFLNFSRFNCLYRAFKR   99 (171)
T ss_pred             EEcCcchhhhHHHHHH-----HCCEEEEEcCCHHHHHHHHHHH
Confidence            9999865433333333     3689999999999999999998

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.59  E-value=1.3e-13  Score=96.31  Aligned_cols=108  Identities=21%  Similarity=0.325  Sum_probs=64.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~  103 (209)
                      |+|+|+|||||||+++.|++.+|+.+++.|.++......  .........   +...........+.....   ...+|+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~~---~~~~~~~~e~~~~~~~~~---~~~~vi   73 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAEE---GEEGFRELEREVLLLLLT---KENAVI   73 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHHH---CHHHHHHHHHHHHHHHhc---cCCcEE
Confidence            789999999999999999999999999998887665321  222111111   110001111122222222   223444


Q ss_pred             e-C--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          104 D-G--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       104 d-g--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      + |  +.........+     .....+|||++|++++.+|+..|
T Consensus        74 ~~g~~~i~~~~~~~~~-----~~~~~~i~l~~~~e~~~~R~~~r  112 (154)
T cd00464          74 ATGGGAVLREENRRLL-----LENGIVVWLDASPEELLERLARD  112 (154)
T ss_pred             ECCCCccCcHHHHHHH-----HcCCeEEEEeCCHHHHHHHhccC
Confidence            4 3  22222221221     23557999999999999999987

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.58  E-value=5.2e-14  Score=100.16  Aligned_cols=166  Identities=15%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCchHHHHHHHHHcCCCCCH-HHHHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAMEE   95 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~   95 (209)
                      +.+++|.|++||||||+++.|+..++..+++.+++....-    ..+....        .....+. ..+.+....... 
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~-   73 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLT--------DEDRLPWLERLNDASYSLYK-   73 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCC--------cccchHHHHHHHHHHHHHHh-
Confidence            4579999999999999999999999998888776532110    0000000        0011111 111222222211 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ....++|+..+ ........+.+  ...+..+|||++|++++.+|+.+|  ..+....+.+..++..+..   +    -.
T Consensus        74 ~~~~g~iv~s~-~~~~~R~~~r~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~~~~~vl~~Q~~~~e~---~----~~  141 (176)
T PRK09825         74 KNETGFIVCSS-LKKQYRDILRK--SSPNVHFLWLDGDYETILARMQRR--AGHFMPPDLLQSQFDALER---P----CA  141 (176)
T ss_pred             cCCCEEEEEEe-cCHHHHHHHHh--hCCCEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHcCC---C----CC
Confidence            12456666444 34444444443  445668999999999999999999  3333445555444333221   1    01


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA  207 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~  207 (209)
                      ....++.+|++.+++++.+.+...++.++...
T Consensus       142 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  173 (176)
T PRK09825        142 DEHDIARIDVNHDIENVTEQCRQAVQAFRQAL  173 (176)
T ss_pred             CcCCeEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence            12358999999999999999999888776543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.57  E-value=1.7e-13  Score=98.18  Aligned_cols=162  Identities=17%  Similarity=0.240  Sum_probs=90.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCch----HHHHHHHHHcCCCC--------CHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSEN----GTMIQNMIKEGKIV--------PSEVTI   86 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~   86 (209)
                      .+|+|+|+|||||||+++.|+..++..   .+....+.+.....+..+    ...+......+...        ......
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            479999999999999999999987632   111001111100011110    11111111111110        000111


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                       .+...+.  .+..+|+|+..   .....+.. .. ....+|||++|.+++.+|+..|  +++  .++.+.+++..+...
T Consensus        82 -~i~~~~~--~g~~vv~~g~~---~~~~~~~~-~~-~~~~~i~l~~~~~~~~~Rl~~R--~~~--~~~~~~~rl~~~~~~  149 (179)
T TIGR02322        82 -EIDQWLE--AGDVVVVNGSR---AVLPEARQ-RY-PNLLVVNITASPDVLAQRLAAR--GRE--SREEIEERLARSARF  149 (179)
T ss_pred             -HHHHHHh--cCCEEEEECCH---HHHHHHHH-HC-CCcEEEEEECCHHHHHHHHHHc--CCC--CHHHHHHHHHHHhhc
Confidence             2333333  46789999862   22223322 22 2347999999999999999988  543  345666665432221


Q ss_pred             chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                           .  .....+++++++.+++++.++|.+++++
T Consensus       150 -----~--~~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       150 -----A--AAPADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             -----c--cccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence                 1  0234567788888999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.57  E-value=2.3e-14  Score=101.96  Aligned_cols=152  Identities=18%  Similarity=0.234  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------   85 (209)
                      ++|.|+|..||||||+++.|++ +|+++++.|.+.++.+..+......+.+.+...     ..+....+           
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            5799999999999999999988 999999999999988777766666665555421     22222221           


Q ss_pred             -----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                                 ...+...+..... ..+++|. |...+.  .    ....+|.+|++.||.++..+|+.+|    ...+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~-pLL~E~--~----~~~~~D~vi~V~a~~e~ri~Rl~~R----~~~~~  148 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI-PLLFES--G----LEKLCDEVIVVYAPEEIRIKRLMER----DGLSE  148 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--T----GGGGSSEEEEEE--HHHHHHHHHHH----HTSTH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc-chhhhh--h----HhhhhceEEEEECCHHHHHHHHHhh----CCCcH
Confidence                       2223333333223 6677774 222221  1    1224789999999999999999988    24455


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHH
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAE  191 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee  191 (209)
                      +.+..++..-.    +..+.....+  ++|+++++.++
T Consensus       149 ~~~~~ri~~Q~----~~~~k~~~ad--~vI~N~g~~~~  180 (180)
T PF01121_consen  149 EEAEARIASQM----PDEEKRKRAD--FVIDNNGSLEE  180 (180)
T ss_dssp             HHHHHHHHTS------HHHHHHH-S--EEEE-SSHHH-
T ss_pred             HHHHHHHHhCC----CHHHHHHhCC--EEEECCCCCCC
Confidence            66666544321    2222222223  56666666653

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.57  E-value=8.6e-14  Score=110.80  Aligned_cols=166  Identities=19%  Similarity=0.226  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------   85 (209)
                      ..|+|+|.+||||||+++.|++ +|+++++.|.+.++.+..+......+.+.++..     ..+....+           
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3699999999999999999987 899999999999998776654333344333221     11111111           


Q ss_pred             -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                 ...+.+.+....+..+++.+.|...+.  .    ....+|.+||+++|.+++.+|+..|   + ....+
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~----~~~~~D~iI~V~ap~e~ri~Rl~~r---R-g~s~~  150 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--G----MAPLFHLVVVVDADVEVRVRRLVEQ---R-GMAEA  150 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--C----chhhCCEEEEEECCHHHHHHHHHhc---C-CCCHH
Confidence                       222333333333445666554433221  1    1124689999999999999999874   1 12233


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      ....++.....     .+....... ++++++.+.+++..++.+.++...
T Consensus       151 ~a~~ri~~Q~~-----~e~k~~~AD-~vIdN~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        151 DARARIAAQAS-----DEQRRAVAD-VWLDNSGTPDELVEAVRALWADRL  194 (395)
T ss_pred             HHHHHHHhcCC-----hHHHHHhCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence            33333322111     111122333 567777799999999888776544

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=9.8e-14  Score=98.01  Aligned_cols=113  Identities=17%  Similarity=0.211  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchH---HHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENG---TMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ++|+++|+|||||||+|+.|++.|.   +..++.+.-+...+.++..+.   +..++.+.       +.....+..++. 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk-   73 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK-   73 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence            5799999999999999999999884   444443332222222222222   11222111       111224444444 


Q ss_pred             cCCCeEEEeCCCCCHHHHHH--HHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 SGNDKFLIDGFPRNEENRAA--FEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~--~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                        +..||+|....-...+..  +.......+..+|||.+|+++|.+|...|
T Consensus        74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er  122 (261)
T COG4088          74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER  122 (261)
T ss_pred             --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence              688999985433322222  11115567778999999999999999776

>TIGR00017 cmk cytidylate kinase

Probab=99.57  E-value=2.7e-13  Score=99.47  Aligned_cols=170  Identities=21%  Similarity=0.293  Sum_probs=95.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHc-----------------C
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKE-----------------G   77 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~-----------------~   77 (209)
                      +++|.|.|++||||||+++.|++++++.+++.|++++...    ..+...  ...+......                 +
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG   81 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence            3689999999999999999999999999999999887652    111110  1111111100                 0


Q ss_pred             C-----------------CCCHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388           78 K-----------------IVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER  139 (209)
Q Consensus        78 ~-----------------~~~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~  139 (209)
                      .                 ....+.+...+.....+. ...++|+||....  +  .    .....++.|||++|.++..+
T Consensus        82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr~~~--~--~----v~~~a~~~ifl~a~~~~Ra~  153 (217)
T TIGR00017        82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGRDIG--T--V----VFPNAEVKIFLDASVEERAK  153 (217)
T ss_pred             cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEcCcc--e--E----EeCCCCEEEEEECCHHHHHH
Confidence            0                 000111133333333321 2457999985211  0  0    22336799999999999988


Q ss_pred             HHhhc-cCCCCCCcHHHHHHHHHHH--HhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHh
Q 028388          140 RILNR-NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAV  199 (209)
Q Consensus       140 R~~~r-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~  199 (209)
                      |...+ .....+-..+.+.+.+..-  .+..+.... .......+++|+ ..+++++++.|.++
T Consensus       154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~-~~~a~~~i~Idts~l~ieevv~~I~~~  216 (217)
T TIGR00017       154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAP-LKKADDALYLDTSNLSIDEVVEKILEY  216 (217)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCc-ccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence            88877 1111123344444444322  122222211 222233355665 67999999998764

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.57  E-value=1.1e-13  Score=97.10  Aligned_cols=152  Identities=22%  Similarity=0.392  Sum_probs=87.9

Q ss_pred             CCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCeEEEe---C
Q 028388           30 PGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDKFLID---G  105 (209)
Q Consensus        30 pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~i~d---g  105 (209)
                      |||||||+++.||+.|++++++.|+.+.+..      +..+.+.+. .+..........++...+...   +.|+.   |
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG   71 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKEN---NCVIACGGG   71 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---SEEEEE-TT
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhccC---cEEEeCCCC
Confidence            7999999999999999999999999887662      222222221 122222233345555544422   44443   2


Q ss_pred             CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH-HHHHHHHHhhchhHHHHHhhcCcEEEEc
Q 028388          106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI-RKRFKVFLESSLPVVQYYEAKGKVRKID  184 (209)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id  184 (209)
                      .+........+..     ...+|||+++++++.+|+..+.. |+....... ......+. ...+.   |...+.+ +++
T Consensus        72 ~~~~~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~-Rp~l~~~~~~~~~~~~~~-~R~~~---Y~~~a~~-~v~  140 (158)
T PF01202_consen   72 IVLKEENRELLKE-----NGLVIYLDADPEELAERLRARDN-RPLLKGKMEHEEILELLF-EREPL---YEQAADI-VVD  140 (158)
T ss_dssp             GGGSHHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCT-SGGTCSHHHHHHHHHHHH-HHHHH---HHHHSSE-EEE
T ss_pred             CcCcHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCC-CCCCCCCChHHHHHHHHH-HHHHH---HHhcCeE-EEe
Confidence            5555555556553     34799999999999999988721 222211111 11112222 22333   4444444 555


Q ss_pred             CCC-ChHHHHHHHHHhcC
Q 028388          185 AAK-PVAEVFDAVKAVFT  201 (209)
Q Consensus       185 ~~~-~~ee~~~~i~~~i~  201 (209)
                      ++. ++++++++|.+.|+
T Consensus       141 ~~~~~~~~i~~~i~~~l~  158 (158)
T PF01202_consen  141 TDGSPPEEIAEEILEFLK  158 (158)
T ss_dssp             TSSCHHHHHHHHHHHHH-
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            544 44999999988763

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.57  E-value=7.8e-14  Score=96.62  Aligned_cols=122  Identities=16%  Similarity=0.236  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      +|.|+|+|||||||+|+.|++.+|+++++.+.+.....      ...... ... .....+.+...+.. +.  ....+|
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~-~~~-~~~i~~~l~~~~~~-~~--~~~~~V   69 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASE-VAA-IPEVRKALDERQRE-LA--KKPGIV   69 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHH-hcc-cHhHHHHHHHHHHH-Hh--hCCCEE
Confidence            58999999999999999999999999999974322211      000000 000 00001112222222 22  245799


Q ss_pred             EeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHH
Q 028388          103 IDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVF  163 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~  163 (209)
                      +||......        ....++++|||++|++.+.+|+.+| ...+...+.+...+++...
T Consensus        70 idg~~~~~~--------~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~  123 (147)
T cd02020          70 LEGRDIGTV--------VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER  123 (147)
T ss_pred             EEeeeeeeE--------EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            998642111        1234789999999999999999986 2233445566666655443

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.56  E-value=2.5e-13  Score=97.00  Aligned_cols=162  Identities=17%  Similarity=0.246  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      +.+|.+|+|+|+|||||||+++.|+++++     ..+++.+. +++.+.... +.. ... ..      .......+...
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~-~~~-~~~-~~------~~~~~~~l~~~   73 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYG-YDK-QSR-IE------MALKRAKLAKF   73 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCC-CCH-HHH-HH------HHHHHHHHHHH
Confidence            35688999999999999999999999985     55666544 444422111 000 000 00      00112223333


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                      +. ..+..||+|+.... .......+ ....+.++|||++|++++.+|...+   .  . .......+........   .
T Consensus        74 l~-~~g~~VI~~~~~~~-~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~~~~---l--~-~~~~~~~~~~~~~~~~---~  141 (176)
T PRK05541         74 LA-DQGMIVIVTTISMF-DEIYAYNR-KHLPNYFEVYLKCDMEELIRRDQKG---L--Y-TKALKGEIKNVVGVDI---P  141 (176)
T ss_pred             HH-hCCCEEEEEeCCcH-HHHHHHHH-hhcCCeEEEEEeCCHHHHHHhchhh---H--H-HHHHcCcccccccCCC---c
Confidence            32 24678999975422 22222222 2334567999999999999997632   0  0 0000001111111111   2


Q ss_pred             HHhhcCcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388          173 YYEAKGKVRKIDAA--KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       173 ~~~~~~~~~~id~~--~~~ee~~~~i~~~i~~  202 (209)
                      .+.....+ ++|++  .++++.+++|.+.+..
T Consensus       142 ~~~~~Ad~-vI~~~~~~~~~~~v~~i~~~l~~  172 (176)
T PRK05541        142 FDEPKADL-VIDNSCRTSLDEKVDLILNKLKL  172 (176)
T ss_pred             ccCCCCCE-EEeCCCCCCHHHHHHHHHHHHHH
Confidence            22222334 45543  4888888888877643

>PRK06547 hypothetical protein; Provisional

Probab=99.55  E-value=1.8e-14  Score=101.96  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=75.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHH-HcCCCC--CHHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMI-KEGKIV--PSEVTIKLLQK   91 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~i~~   91 (209)
                      ++....+++|+|.|++||||||+++.|++.++..+++.|+++... ..-......+...+ ..++..  +.+........
T Consensus         9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~   87 (172)
T PRK06547          9 RLCGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-HGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGD   87 (172)
T ss_pred             HhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-ccCChHHHHHHHHHHhCCCCceecCCCCCCCCCC
Confidence            455677899999999999999999999999999999998877532 11111111122222 122110  10000000000


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ...-.....+|++|..........+.+  .....+.|||++|.+++.+|+..|
T Consensus        88 ~~~l~~~~vVIvEG~~al~~~~r~~~d--~~g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         88 WVSVEPGRRLIIEGVGSLTAANVALAS--LLGEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             cEEeCCCCeEEEEehhhccHHHHHHhc--cCCCEEEEEEECCHHHHHHHHHhc
Confidence            011113467889996433322222221  122338999999999999999988

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.55  E-value=3e-13  Score=94.46  Aligned_cols=164  Identities=16%  Similarity=0.242  Sum_probs=102.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHHHH-------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSEVT-------   85 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~-------   85 (209)
                      ++.+|+|+||+|+||||+++.|-+.. -..+|.+...|...++   +..    ..+.+.+.+..+.++.+..+       
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT   81 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT   81 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence            78999999999999999999999988 4455555555554332   111    11455555555444433222       


Q ss_pred             -HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           86 -IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        86 -~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                       ...++..+.  .+..+|+|=   ..+-......  ..+....||+.+|. +++.+|+.+|    ..+..+.+.+|+...
T Consensus        82 ~~~~ve~~~~--~G~~vildI---d~qGa~qvk~--~~p~~v~IFi~pPs~eeL~~RL~~R----gtds~e~I~~Rl~~a  150 (191)
T COG0194          82 SREPVEQALA--EGKDVILDI---DVQGALQVKK--KMPNAVSIFILPPSLEELERRLKGR----GTDSEEVIARRLENA  150 (191)
T ss_pred             cHHHHHHHHh--cCCeEEEEE---ehHHHHHHHH--hCCCeEEEEEcCCCHHHHHHHHHcc----CCCCHHHHHHHHHHH
Confidence             445555555  478888872   1222223332  33345577777755 6788888855    567889999998877


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ......    ... -+.+++|.  +++..+..+...+..
T Consensus       151 ~~Ei~~----~~~-fdyvivNd--d~e~a~~~l~~ii~a  182 (191)
T COG0194         151 KKEISH----ADE-FDYVIVND--DLEKALEELKSIILA  182 (191)
T ss_pred             HHHHHH----HHh-CCEEEECc--cHHHHHHHHHHHHHH
Confidence            664322    222 33556665  678888888877654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.55  E-value=5.9e-13  Score=98.41  Aligned_cols=173  Identities=21%  Similarity=0.274  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHHHcCC---------------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKEGK---------------   78 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~---------------   78 (209)
                      .+++|.|.|++||||||+++.|++++|+.+++.|.+++....    .+-...  ....+......               
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLN   82 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence            368999999999999999999999999999999998886432    122111  12222111100               


Q ss_pred             --CCCHH----H-------H--HHHHHHHHH-----hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388           79 --IVPSE----V-------T--IKLLQKAME-----ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (209)
Q Consensus        79 --~~~~~----~-------~--~~~i~~~~~-----~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~  138 (209)
                        .+...    .       .  ...+.+.+.     -....++|++|..  ...  .    .....++.|||++|.+...
T Consensus        83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~--~~~--~----vl~~a~~~ifl~a~~e~R~  154 (225)
T PRK00023         83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRD--IGT--V----VFPDAELKIFLTASAEERA  154 (225)
T ss_pred             CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecC--hhe--E----EeCCCCEEEEEECCHHHHH
Confidence              00000    0       0  001111111     1124679999841  111  1    2233678999999999887


Q ss_pred             HHHhhc--cCCCCCCcHHHHHHHHHHHHh--hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          139 RRILNR--NQGREDDNVETIRKRFKVFLE--SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       139 ~R~~~r--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      +|...+  ..+. ....+...+.+.....  .... ...+...+..+++|+ ..+++++++.|.+++..
T Consensus       155 ~Rr~~~~~~~g~-~~~~~~~~~~i~~rD~~~~~r~-~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~  221 (225)
T PRK00023        155 ERRYKELQAKGI-SVDFEDLLAEIKERDERDSNRA-VAPLKPAEDALLLDTSGLSIEEVVEKILALVEE  221 (225)
T ss_pred             HHHHHHHHhcCC-CCCHHHHHHHHHHHHHhhhhcc-cccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence            776555  1121 2334444443332211  1110 111122233467776 56999999999999864

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.55  E-value=3.1e-13  Score=93.23  Aligned_cols=168  Identities=17%  Similarity=0.152  Sum_probs=96.7

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   90 (209)
                      .+.+.+|.+|+++|.+||||||+|..|.++|-    ..++--+|-+|+.+..+-.+...-+...  ..      ...-+.
T Consensus        17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~en--iR------RvaevA   88 (197)
T COG0529          17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIEN--IR------RVAEVA   88 (197)
T ss_pred             HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHH--HH------HHHHHH
Confidence            34566789999999999999999999999983    3445556778887665443332211110  00      011222


Q ss_pred             HHHHhcCCCeEEEeCCCCCH-HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh
Q 028388           91 KAMEESGNDKFLIDGFPRNE-ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP  169 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~-~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  169 (209)
                      ..+.. .+..+|+. |.+-. +.++...++......+-||++||.++|.+|=-+.          -+.+.....-.+...
T Consensus        89 kll~d-aG~iviva-~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKG----------LYkKAr~GeI~~fTG  156 (197)
T COG0529          89 KLLAD-AGLIVIVA-FISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKG----------LYKKARAGEIKNFTG  156 (197)
T ss_pred             HHHHH-CCeEEEEE-eeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchH----------HHHHHHcCCCCCCcC
Confidence            22221 24444443 33333 3333444422223567999999999999994433          222211111122222


Q ss_pred             HHHHHhhc-CcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          170 VVQYYEAK-GKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       170 ~~~~~~~~-~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      +...|+.+ ++-+.+|+ ..++++.+++|..++..
T Consensus       157 id~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         157 IDSPYEAPENPELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHh
Confidence            33334444 35567776 57999999999988753

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=99.54  E-value=9.1e-13  Score=92.62  Aligned_cols=161  Identities=17%  Similarity=0.248  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH---------------HHH-
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---------------EVT-   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-   85 (209)
                      .++.++|..||||||+++.+. .+|+++|+.|.+.|+.+..+......+.+.++..-..++               +.. 
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            578999999999999999996 899999999999999998877666666655543211111               111 


Q ss_pred             ------------HHHHHHHHHh-cCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           86 ------------IKLLQKAMEE-SGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        86 ------------~~~i~~~~~~-~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                                  ..+..+.... ..+ ..+|+| .|..++.  .+.    ..+..+|.+.||.++..+|+..|    ++.
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~----~~~~~tvvV~cd~~~Ql~Rl~~R----d~l  149 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLL----KICHKTVVVTCDEELQLERLVER----DEL  149 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHH----hheeeEEEEEECcHHHHHHHHHh----ccc
Confidence                        1222222111 124 455566 4544443  111    12456899999999999999988    255


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      +.++..+|+...-    |+.+..+..  -+++|++.+++++.+++...+
T Consensus       150 se~dAe~Rl~sQm----p~~~k~~~a--~~Vi~Nng~~~~l~~qv~~v~  192 (225)
T KOG3220|consen  150 SEEDAENRLQSQM----PLEKKCELA--DVVIDNNGSLEDLYEQVEKVL  192 (225)
T ss_pred             cHHHHHHHHHhcC----CHHHHHHhh--heeecCCCChHHHHHHHHHHH
Confidence            6667776655422    222222322  267888889999988877654

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.53  E-value=3.1e-13  Score=98.76  Aligned_cols=169  Identities=17%  Similarity=0.250  Sum_probs=96.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH-----
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE-----   83 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~-----   83 (209)
                      .+.++.+|+|+||||||||||++.|.+.. ..+ +......+.....   +..    ....+...+..+.++...     
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~   87 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGN   87 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCc
Confidence            45678899999999999999999998643 111 1110111110000   000    011222222222222110     


Q ss_pred             ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec--CHHHHHHHHhhccCCCCCCcHHHHHH
Q 028388           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC--SEEEMERRILNRNQGREDDNVETIRK  158 (209)
Q Consensus        84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~--~~~~~~~R~~~r~~~~~~~~~~~~~~  158 (209)
                         .....+...+.  .+..+|+|...   .....+.+   ..|+.++++.+  +.+++.+|+..|  +  .+..+.+.+
T Consensus        88 ~YGt~~~~i~~~~~--~g~~vi~~~~~---~g~~~l~~---~~pd~~~if~~pps~e~l~~Rl~~R--~--~~~~~~~~~  155 (206)
T PRK14738         88 YYGVPKAPVRQALA--SGRDVIVKVDV---QGAASIKR---LVPEAVFIFLAPPSMDELTRRLELR--R--TESPEELER  155 (206)
T ss_pred             eecCCHHHHHHHHH--cCCcEEEEcCH---HHHHHHHH---hCCCeEEEEEeCCCHHHHHHHHHHc--C--CCCHHHHHH
Confidence               11345565555  47788888543   33333433   34667655555  456789999987  3  345667878


Q ss_pred             HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      |+..+......     .....++++|++.++++++++|.+.|...
T Consensus       156 Rl~~~~~e~~~-----~~~~~~~iId~~~~~e~v~~~i~~~l~~~  195 (206)
T PRK14738        156 RLATAPLELEQ-----LPEFDYVVVNPEDRLDEAVAQIMAIISAE  195 (206)
T ss_pred             HHHHHHHHHhc-----ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence            87766543221     11235788999889999999999988654

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.52  E-value=1e-12  Score=92.56  Aligned_cols=153  Identities=14%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             EcCCCCChhHHHHHHHHHhCCceecHhHHHHHH-HH---cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH---HhcCCC
Q 028388           27 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IK---SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM---EESGND   99 (209)
Q Consensus        27 ~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~   99 (209)
                      .|+|||||||+++.|++.++..+++.|.+.... +.   .+......           ........+.+..   ....+.
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~   69 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD-----------DRKPWLQALNDAAFAMQRTNKV   69 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh-----------hHHHHHHHHHHHHHHHHHcCCc
Confidence            499999999999999999999999886542111 00   01100000           0001111111111   111244


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK  179 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (209)
                      .+|+ ...........+..  ...+..+|||+||++++.+|+..|  .......+.+..++..+.    +.   -.....
T Consensus        70 ~viv-~s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R--~~~~a~~~vl~~Q~~~~e----p~---~~~e~~  137 (163)
T PRK11545         70 SLIV-CSALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQ----EP---GADETD  137 (163)
T ss_pred             eEEE-EecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHcC----CC---CCCCCC
Confidence            4555 33333444444443  344567999999999999999999  322234444443332221    11   011125


Q ss_pred             EEEEcCCCChHHHHHHHHHhcCc
Q 028388          180 VRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       180 ~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ++.+|++.+++++.+.+...+++
T Consensus       138 ~~~id~~~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        138 VLVVDIDQPLEGVVASTIEVIKK  160 (163)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHHH
Confidence            78899998999999999888754

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.51  E-value=3.5e-12  Score=96.78  Aligned_cols=177  Identities=18%  Similarity=0.238  Sum_probs=101.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCC------chHHHHHHHHH--cCCCCCHH-------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS------ENGTMIQNMIK--EGKIVPSE-------   83 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~-------   83 (209)
                      .+|++|+|.|++||||||+|..|+++||...+-..|.+++.+....      .........+.  .....+++       
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            4789999999999999999999999999985444577776554311      01000111111  00011111       


Q ss_pred             ----H----HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhc--cCCCCCCc
Q 028388           84 ----V----TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNR--NQGREDDN  152 (209)
Q Consensus        84 ----~----~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r--~~~~~~~~  152 (209)
                          .    +...+.+.+.  ++..+|++|....+.+...+.. ..... +.+++. .+.+...+|...|  ...++.  
T Consensus       170 ~~~~~v~~gi~~~I~~~~~--~g~s~IiEGvhl~P~~i~~~~~-~~~~~-i~~~l~i~~ee~h~~RF~~R~~~~~r~~--  243 (301)
T PRK04220        170 RHVEPVSVGVEAVIERALK--EGISVIIEGVHIVPGFIKEKYL-ENPNV-FMFVLTLSDEEAHKARFYARARVSRRPA--  243 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHH--hCCcEEEecCCCCHHHHHHhhh-cCCCE-EEEEEEECCHHHHHHHHHHHHhhhCCch--
Confidence                1    1334444444  4899999998877777665444 33333 344555 4668899999998  222222  


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                       +.+.+.+........-+.+...+.+ +-++|+. ++++..+.+.+.+....
T Consensus       244 -~~y~~~~~~ir~iq~~l~~~a~~~~-ip~I~n~-~i~~s~~~~~~~i~~~~  292 (301)
T PRK04220        244 -ERYLKNFEIIREINDYIVEKAKKHG-VPVIENI-SIEETVDKILEIITERL  292 (301)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHhC-CCeecCc-cHHHHHHHHHHHHHHHH
Confidence             2222333333333334445455544 3445554 67777777776665544

>PTZ00301 uridine kinase; Provisional

Probab=99.51  E-value=1.2e-13  Score=100.60  Aligned_cols=167  Identities=16%  Similarity=0.211  Sum_probs=87.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      .++|.|.|+|||||||+|+.|+++++       ..+++.|++++.. ..-. ....-...+.....+..+.+.+.+....
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~-~~~~-~~~~~~~~~d~p~a~D~~~l~~~l~~L~   80 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQ-SNIP-ESERAYTNYDHPKSLEHDLLTTHLRELK   80 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCc-ccCC-HHHhcCCCCCChhhhCHHHHHHHHHHHH
Confidence            47999999999999999999988873       2356666665432 1000 0000000011112222333333332222


Q ss_pred             Hh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCC
Q 028388           94 EE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGR  148 (209)
Q Consensus        94 ~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r---~~~~  148 (209)
                      ..                      .+...+|+||+.....  ..+..    ..|+.||+++|.+++..|...|   ++|+
T Consensus        81 ~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~----l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~  154 (210)
T PTZ00301         81 SGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN----EMDCLIFVDTPLDICLIRRAKRDMRERGR  154 (210)
T ss_pred             cCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH----hCCEEEEEeCChhHHHHHHHhhhHHhcCC
Confidence            11                      1246778899654211  12222    3578999999999999999998   2333


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHH----hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYY----EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                         ..+...+   .|.....+....|    ....++++ ......+.....+.+.|..
T Consensus       155 ---~~e~v~~---~~~~~v~~~~~~~I~p~k~~ADiIi-~~~~~~~~~~~~~~~~~~~  205 (210)
T PTZ00301        155 ---TFESVIE---QYEATVRPMYYAYVEPSKVYADIIV-PSWKDNSVAVGVLRAKLNH  205 (210)
T ss_pred             ---CHHHHHH---HHHHhhcccHHHHcCccccCCcEEE-cCCCcchHHHHHHHHHHHH
Confidence               3333333   2444444444333    22234544 4443444555555454443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.51  E-value=1.7e-13  Score=98.66  Aligned_cols=146  Identities=18%  Similarity=0.280  Sum_probs=85.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCc---eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT---HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      .++.+|.|.|++||||||+|+.|.+.++..   .++.|+++... .... ......--+.+..-...+++.+.+......
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~-~~~~-~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g   83 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQ-SHLP-FEERNKINYDHPEAFDLDLLIEHLKDLKQG   83 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccch-hhcC-HhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence            345899999999999999999999999844   77888877643 1111 100000011122222233333333333321


Q ss_pred             ----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCc
Q 028388           96 ----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDN  152 (209)
Q Consensus        96 ----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~  152 (209)
                                            .+...+|++|+....+  +.+..    -.|+.||+++|.+++..|...| ...|-.+ 
T Consensus        84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~----~~d~kIfvdtd~D~RliRri~RD~~~rg~~-  156 (218)
T COG0572          84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD----LMDLKIFVDTDADVRLIRRIKRDVQERGRD-  156 (218)
T ss_pred             CcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh----hcCEEEEEeCCccHHHHHHHHHHHHHhCCC-
Confidence                                  1257889999754333  12222    3678999999999998888888 2222222 


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhh
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      .+..   +.+|....+|.++.|-+
T Consensus       157 ~e~v---i~qy~~~vkp~~~~fIe  177 (218)
T COG0572         157 LESV---IEQYVKTVRPMYEQFIE  177 (218)
T ss_pred             HHHH---HHHHHHhhChhhhhccC
Confidence            2333   33455566666655543

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.50  E-value=3.4e-14  Score=95.26  Aligned_cols=106  Identities=30%  Similarity=0.478  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----cCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----SGN   98 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~   98 (209)
                      +|+|.|+|||||||+|+.|++++|+++++.|+++.......          .............+.+...+..    ...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   70 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN   70 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence            58999999999999999999999999999999432110000          0000000011223333333332    246


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ..+|+||... ... ..  .  ....+.+||+.++.+++.+|+.+|
T Consensus        71 ~~~ii~g~~~-~~~-~~--~--~~~~~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   71 DNWIIDGSYE-SEM-EI--R--LPEFDHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             -EEEEECCSC-HCC-HS--C--CHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred             CeEEEeCCCc-cch-hh--h--hhcCCEEEEEECCCHHHHHHHHHH
Confidence            7899999432 111 11  1  112357899999888554444444

...

>smart00072 GuKc Guanylate kinase homologues

Probab=99.49  E-value=1.7e-13  Score=98.58  Aligned_cols=163  Identities=21%  Similarity=0.375  Sum_probs=96.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHc---CCchH----HHHHHHHHcCCCCCHH--------
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS---GSENG----TMIQNMIKEGKIVPSE--------   83 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~--------   83 (209)
                      +++|+|.||+||||+|+++.|.+.+.  +..+-. ...+...+.   +..+.    +.+...+..+.+++..        
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~-~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG   80 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS-HTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG   80 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee-ecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence            46899999999999999999998862  222211 222222111   11111    4444444444433321        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                      .....+...+.  .++.+|+|..+....+   +.. ....| ++||+. .+.+++.+|+..|  +  .+..+.+.+++..
T Consensus        81 t~~~~i~~~~~--~~~~~ild~~~~~~~~---l~~-~~~~~-~vIfi~~~s~~~l~~rl~~R--~--~~~~~~i~~rl~~  149 (184)
T smart00072       81 TSKETIRQVAE--QGKHCLLDIDPQGVKQ---LRK-AQLYP-IVIFIAPPSSEELERRLRGR--G--TETAERIQKRLAA  149 (184)
T ss_pred             cCHHHHHHHHH--cCCeEEEEECHHHHHH---HHH-hCCCc-EEEEEeCcCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence            22456666665  4789999977544433   333 33334 688887 5667799999976  3  3456778888776


Q ss_pred             HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .....    ..+. .-.. +|.++ ++++.++++.+.|..
T Consensus       150 a~~~~----~~~~-~fd~-~I~n~-~l~~~~~~l~~~i~~  182 (184)
T smart00072      150 AQKEA----QEYH-LFDY-VIVND-DLEDAYEELKEILEA  182 (184)
T ss_pred             HHHHH----hhhc-cCCE-EEECc-CHHHHHHHHHHHHHh
Confidence            43321    1121 1233 44444 789999999888754

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR00235 udk uridine kinase

Probab=99.49  E-value=3.4e-13  Score=98.78  Aligned_cols=173  Identities=13%  Similarity=0.193  Sum_probs=88.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      |.++++.+|+|.|++||||||+++.|+..++   ..+++.|+++... ... .........+........+.+.+.+...
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l   78 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQ-SHL-EMAERKKTNFDHPDAFDNDLLYEHLKNL   78 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccCh-hhC-CHHHhcCCCCCCccHhHHHHHHHHHHHH
Confidence            3456778999999999999999999999886   5567776654321 000 0000000000000111111222222222


Q ss_pred             HHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCC
Q 028388           93 MEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGRE  149 (209)
Q Consensus        93 ~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~  149 (209)
                      ...                      .....+|+||.+.....  .+.    ..++++||+++|.+++..|...| ...+.
T Consensus        79 ~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~----~~~d~~I~v~~~~~~~l~R~~~R~~~~rg  152 (207)
T TIGR00235        79 KNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR----DLMDLKIFVDTPLDIRLIRRIERDINERG  152 (207)
T ss_pred             HCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH----HhCCEEEEEECChhHHHHHHHHHHHHhhC
Confidence            110                      12467888987543221  122    24679999999999999998887 11122


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHH----hhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYY----EAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      ... +....+   |.....+.+..+    ....+ ++++++...+..++.+...|+
T Consensus       153 ~~~-~~~~~~---~~~~~~~~~~~~i~~~~~~Ad-~vi~~~~~~~~~~~~~~~~~~  203 (207)
T TIGR00235       153 RSL-DSVIDQ---YRKTVRPMYEQFVEPTKQYAD-LIIPEGGRNEVAINVLDTKIK  203 (207)
T ss_pred             CCH-HHHHHH---HHHhhhhhHHHhCcccccccE-EEEcCCCCchHHHHHHHHHHH
Confidence            222 222222   323333333222    22223 455555566666666555543

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.49  E-value=1.5e-12  Score=106.16  Aligned_cols=152  Identities=20%  Similarity=0.259  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      |.|+|+|+|||||||+++.|++.+|+++++.|+++.+.  .+....+.+..   .++....+...+.+++....  ...+
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g~~i~~i~~~---~Ge~~fr~~E~~~l~~l~~~--~~~V   73 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EGRSVRRIFEE---DGEEYFRLKEKELLRELVER--DNVV   73 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cCCCHHHHHHH---hhhHHHHHHHHHHHHHHhhc--CCEE
Confidence            35999999999999999999999999999999887664  22222222221   12222233334444444321  2223


Q ss_pred             EEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCc
Q 028388          102 LIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK  179 (209)
Q Consensus       102 i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (209)
                      |-.|  .+.....+..+..      ..+|||+++++++.+|+..+  +|+.....  .+++...++...++++   .   
T Consensus        74 is~Gggvv~~~~~r~~l~~------~~vI~L~as~e~l~~Rl~~~--~RPLl~~~--~e~l~~L~~~R~~lY~---~---  137 (488)
T PRK13951         74 VATGGGVVIDPENRELLKK------EKTLFLYAPPEVLMERVTTE--NRPLLREG--KERIREIWERRKQFYT---E---  137 (488)
T ss_pred             EECCCccccChHHHHHHhc------CeEEEEECCHHHHHHHhccC--CCCCcccc--HHHHHHHHHHHHHHHh---c---
Confidence            3233  2233344444432      35899999999999999876  55532111  1233333333344433   2   


Q ss_pred             EEEEcC-CCChHHHHHHH
Q 028388          180 VRKIDA-AKPVAEVFDAV  196 (209)
Q Consensus       180 ~~~id~-~~~~ee~~~~i  196 (209)
                      +..+|+ +.+++++++++
T Consensus       138 ~~~IDt~~~s~~e~~~~i  155 (488)
T PRK13951        138 FRGIDTSKLNEWETTALV  155 (488)
T ss_pred             ccEEECCCCCHHHHHHHH
Confidence            135655 55676766555

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.49  E-value=1.7e-12  Score=110.04  Aligned_cols=172  Identities=19%  Similarity=0.240  Sum_probs=101.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCch--HHHHHHHHHc-------------CCCC-
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIKE-------------GKIV-   80 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~~~-------------~~~~-   80 (209)
                      .++|.|.||+||||||+++.|+++||+.+++.+.+++....    .+-..  ...+.+....             ++.+ 
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT  521 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence            56899999999999999999999999999999999998722    22111  1112221111             0000 


Q ss_pred             ----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388           81 ----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (209)
Q Consensus        81 ----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~  143 (209)
                                      ....++..+....++. ...++|+||--        .-....+..++-|||++++++..+|+.+
T Consensus       522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRd--------igtvv~p~a~~kifl~a~~~~Ra~Rr~~  593 (661)
T PRK11860        522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRD--------MGTVIFPDAALKVFLTASAEARAERRYK  593 (661)
T ss_pred             hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCC--------CccEECCCCCeEEEEECChhHHHHHHHH
Confidence                            0111122222222211 24578999741        0010345678999999999998888876


Q ss_pred             c--cCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          144 R--NQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       144 r--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      .  ..+. ....+.+.+.+.  .+.+..+... .+....+.++||+ ..+++++++.|.+++.+
T Consensus       594 ~~~~~~~-~~~~~~~~~~~~~Rd~~d~~R~~~-pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        594 QLISKGI-SANIADLLADLEARDARDTQRSVA-PLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHhCCC-CCCHHHHHHHHHHHhHHhhcCCCC-CCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence            4  2222 223333333332  2333322221 1233345567766 66999999999999865

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.49  E-value=1.7e-12  Score=106.00  Aligned_cols=102  Identities=22%  Similarity=0.355  Sum_probs=80.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      .+..|.+|+++|+|||||||+|+.+++..++.+++.|.+- .                       .......+...+.  
T Consensus       365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~--  418 (526)
T TIGR01663       365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALD--  418 (526)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHh--
Confidence            4567889999999999999999999999999999997641 1                       1112344555555  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+..||+|.......++..|..+  ...-+..++++++|.+++.+|+..|
T Consensus       419 ~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R  468 (526)
T TIGR01663       419 QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR  468 (526)
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence            47899999988888877777765  3333556999999999999999999

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.48  E-value=1.2e-12  Score=93.81  Aligned_cols=163  Identities=17%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------HHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------EVTI   86 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------~~~~   86 (209)
                      .+|+|.||+||||||+++.|++.++...+......++...+   +..    ....+...+..+..+..        ....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            57999999999999999999998765444433333322111   000    01122222222222111        1113


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                      ..+...+.  .+..+|+|..   ......+.. ....+..++++.++.+.+.+|+..|  +  ....+.+.+++..+...
T Consensus        82 ~~i~~~~~--~g~~vi~d~~---~~~~~~~~~-~~~~~~~i~~~~~~~e~~~~Rl~~r--~--~~~~~~i~~rl~~~~~~  151 (180)
T TIGR03263        82 SPVEEALA--AGKDVLLEID---VQGARQVKK-KFPDAVSIFILPPSLEELERRLRKR--G--TDSEEVIERRLAKAKKE  151 (180)
T ss_pred             HHHHHHHH--CCCeEEEECC---HHHHHHHHH-hCCCcEEEEEECCCHHHHHHHHHHc--C--CCCHHHHHHHHHHHHHH
Confidence            45555555  4788999953   333334444 3334545666677789999999977  3  23556777777665432


Q ss_pred             chhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          167 SLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .    . +....+.++.| + +.+++.+++...+.
T Consensus       152 ~----~-~~~~~d~~i~n-~-~~~~~~~~l~~~~~  179 (180)
T TIGR03263       152 I----A-HADEFDYVIVN-D-DLEKAVEELKSIIL  179 (180)
T ss_pred             H----h-ccccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence            1    1 12223444444 4 78999999988764

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.47  E-value=4e-12  Score=93.02  Aligned_cols=169  Identities=18%  Similarity=0.261  Sum_probs=95.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCC--------H
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVP--------S   82 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~--------~   82 (209)
                      |..+.+|+|.|++||||||+++.|++.++..++......++...+   +..    ....+......+....        .
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y   81 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY   81 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence            346789999999999999999999998863333322222221110   000    0122222222111110        0


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        83 ~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                      ......+...+.  .+..+|+|..+   .....+.. ....+..++++.++.+++.+|+..|  +  .+..+.+.+++..
T Consensus        82 ~~~~~~i~~~l~--~g~~vi~dl~~---~g~~~l~~-~~~~~~~I~i~~~s~~~l~~Rl~~R--~--~~~~~~i~~rl~~  151 (205)
T PRK00300         82 GTPRSPVEEALA--AGKDVLLEIDW---QGARQVKK-KMPDAVSIFILPPSLEELERRLRGR--G--TDSEEVIARRLAK  151 (205)
T ss_pred             cCcHHHHHHHHH--cCCeEEEeCCH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHhc--C--CCCHHHHHHHHHH
Confidence            011334555554  47788998543   33334444 2333333555567789999999987  3  3466778888777


Q ss_pred             HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.....    ++.. ...+++|+  +.+++..++...+...
T Consensus       152 ~~~~~~----~~~~-~d~vi~n~--~~e~~~~~l~~il~~~  185 (205)
T PRK00300        152 AREEIA----HASE-YDYVIVND--DLDTALEELKAIIRAE  185 (205)
T ss_pred             HHHHHH----hHHh-CCEEEECC--CHHHHHHHHHHHHHHH
Confidence            654332    2222 33445544  7999999999988765

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.46  E-value=1.6e-11  Score=93.48  Aligned_cols=149  Identities=19%  Similarity=0.242  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN   98 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~   98 (209)
                      ..+|+|+|++||||||+++.|+ ..|+.+++.-                           +..++..+++.....  ...
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~---------------------------~~~L~~~l~~~~~~~~~~~~   57 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE-DLGYYCVDNL---------------------------PPSLLPKLVELLAQSGGIRK   57 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH-HcCCeEECCc---------------------------CHHHHHHHHHHHHhcCCCCC
Confidence            4589999999999999999996 5687776431                           111112222222211  134


Q ss_pred             CeEEEeCCCCCH--HHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           99 DKFLIDGFPRNE--ENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        99 ~~~i~dg~~~~~--~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      -.+++|......  .....+..+ .......+|||+++++++.+|+..+.+.++........+.+...++...+    +.
T Consensus        58 ~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~p----l~  133 (288)
T PRK05416         58 VAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAP----LR  133 (288)
T ss_pred             eEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhh----HH
Confidence            577788643221  122222222 22223368999999999999997531123322112222223222222222    23


Q ss_pred             hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      ...++ +||+ +.+++++.++|.+.+..
T Consensus       134 ~~ADi-vIDTs~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        134 ERADL-VIDTSELSVHQLRERIRERFGG  160 (288)
T ss_pred             HhCCE-EEECCCCCHHHHHHHHHHHHhc
Confidence            33444 4555 66999999999998854

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=6e-12  Score=91.57  Aligned_cols=179  Identities=17%  Similarity=0.217  Sum_probs=104.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC------CchHHHHHHHHHcCC--CCCHHHH---
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG------SENGTMIQNMIKEGK--IVPSEVT---   85 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~---   85 (209)
                      .+..|.+|+|.|+||+||||+|..||.+||...+-..|.+|+.+..-      +-+.......|+.-.  ......+   
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF  164 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF  164 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence            45679999999999999999999999999988877778888876651      111111111121111  0011011   


Q ss_pred             -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe-cCHHHHHHHHhhccCCCCC---
Q 028388           86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD-CSEEEMERRILNRNQGRED---  150 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~-~~~~~~~~R~~~r~~~~~~---  150 (209)
                                 ...+.+++.  ++..+|++|....+...+.-   ......+.++|. .+++....|.-.|  .+..   
T Consensus       165 ~dqa~~V~~GI~~VI~RAi~--eG~~lIIEGvHlVPg~i~~~---~~~~n~~~~~l~i~dee~Hr~RF~~R--~~~t~~~  237 (299)
T COG2074         165 EDQASAVMVGIEAVIERAIE--EGEDLIIEGVHLVPGLIKEE---ALGNNVFMFMLYIADEELHRERFYDR--IRYTHAS  237 (299)
T ss_pred             HHHhHHHHHHHHHHHHHHHh--cCcceEEEeeeeccccccHh---hhccceEEEEEEeCCHHHHHHHHHHH--HHHHhcc
Confidence                       334555555  48899999854333222110   111223444444 4667789999998  2221   


Q ss_pred             CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+...+.+++..++....-+.+..++.+ +=+++++ +.+++.+++.+.+.+..
T Consensus       238 rp~~Ryl~yf~EiR~I~Dyl~~~Are~g-VPvI~n~-di~etv~~il~~i~~~~  289 (299)
T COG2074         238 RPGGRYLEYFKEIRTIHDYLVERAREHG-VPVIEND-DIDETVDRILEDIRKRT  289 (299)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhcC-CCeeccc-cHHHHHHHHHHHHHHHH
Confidence            2334455555555444433444444444 4556665 78899999888876644

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.46  E-value=3e-12  Score=92.07  Aligned_cols=159  Identities=16%  Similarity=0.194  Sum_probs=88.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      .++.+|+|+|+|||||||+++.|+..+.     ..+++.++ +++.+..+..+.. .....+        ..+.. +...
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~~~~~~~~~~~~--------~~~~~-~~~~   85 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDLGFSEEDRKENI--------RRIGE-VAKL   85 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhccccCCCHHHHHHHH--------HHHHH-HHHH
Confidence            5678999999999999999999999872     34566544 4443322211111 000000        00011 1122


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      +. ..+..||+|.......+...+..+....+..+|||++|.+++.+|...+  ...+. .       .+..+..    .
T Consensus        86 ~~-~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~-~-------~~~~l~~----~  152 (184)
T TIGR00455        86 FV-RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARN-G-------EIKGFTG----I  152 (184)
T ss_pred             HH-cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhc-C-------CccCccc----c
Confidence            22 2489999998666666666666632223456899999999999993311  00000 0       0000100    1


Q ss_pred             HHHHhh-cCcEEEEcC-CCChHHHHHHHHHhc
Q 028388          171 VQYYEA-KGKVRKIDA-AKPVAEVFDAVKAVF  200 (209)
Q Consensus       171 ~~~~~~-~~~~~~id~-~~~~ee~~~~i~~~i  200 (209)
                      ...|.. ....++||+ ..++++++++|.+.|
T Consensus       153 ~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       153 DSPYEAPENPEVVLDTDQNDREECVGQIIEKL  184 (184)
T ss_pred             cCCCCCCCCCcEEEECCCCCHHHHHHHHHHhC
Confidence            111232 233467775 468999999887654

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.46  E-value=5.8e-12  Score=88.77  Aligned_cols=156  Identities=14%  Similarity=0.176  Sum_probs=84.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcC----Cch---------HHHHHHHHHcCCCCCHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSG----SEN---------GTMIQNMIKEGKIVPSEVTI   86 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~~~~   86 (209)
                      .+|++.|+|.|||||+|+.|++.+.  |.+++.|.+...+....    ..+         +......        ...+.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~   73 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRL--------YAAMH   73 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHH--------HHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHH--------HHHHH
Confidence            6899999999999999999999996  56788877666432211    000         0101000        01112


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHH-HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEEN-RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~-~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  165 (209)
                      ..+.....  .+..||+|.......+ .+.+.++....+.+.|-+.||.+++.+|-..|  +.......   +  .++..
T Consensus        74 ~~iaa~a~--aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~R--gDR~~G~a---~--~q~~~  144 (174)
T PF07931_consen   74 AAIAAMAR--AGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERAR--GDRPIGLA---A--WQAEH  144 (174)
T ss_dssp             HHHHHHHH--TT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHH--TSSSTTHH---H--HHTTG
T ss_pred             HHHHHHHh--CCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhc--CCcchHHH---H--HHHhh
Confidence            22222222  4899999987666665 44554533345667999999999999999998  32111111   1  01111


Q ss_pred             hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388          166 SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~  201 (209)
                      ...      ....+ +.+|+ ..++++++++|.+.++
T Consensus       145 Vh~------~~~YD-leVDTs~~sp~ecA~~I~~~~~  174 (174)
T PF07931_consen  145 VHE------GGRYD-LEVDTSATSPEECAREILARLE  174 (174)
T ss_dssp             GGT------T---S-EEEETTSS-HHHHHHHHHTT--
T ss_pred             ccc------CCCCC-EEEECCCCCHHHHHHHHHHHhC
Confidence            111      11223 45666 5699999999988763

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.45  E-value=2.7e-12  Score=97.01  Aligned_cols=111  Identities=16%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      ++|+|+|.|||||||+|+.|++.+.     ..+++.+.+.   +.... +.....      +......+...+++.+.  
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~~~~-y~~~~~------Ek~~R~~l~s~v~r~ls--   69 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---IDRND-YADSKK------EKEARGSLKSAVERALS--   69 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TTSS-S--GGG------HHHHHHHHHHHHHHHHT--
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cchhh-hhchhh------hHHHHHHHHHHHHHhhc--
Confidence            4899999999999999999999863     3455543333   11111 110000      00001223455555554  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ....||+|+.++-...+..+..+  ....+..+||++++.+.+.+|..+|
T Consensus        70 ~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R  119 (270)
T PF08433_consen   70 KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKR  119 (270)
T ss_dssp             T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHT
T ss_pred             cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhcc
Confidence            36899999966555544444333  4445567999999999999999999

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.45  E-value=3.5e-13  Score=115.06  Aligned_cols=171  Identities=18%  Similarity=0.235  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc----CCchHH----------HHHHHHHc------------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS----GSENGT----------MIQNMIKE------------   76 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~----~~~~~~----------~~~~~~~~------------   76 (209)
                      +|.|.|||||||||+|+.|++++|+.+++.+.+++.....    +.....          .+......            
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDSP   82 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCCc
Confidence            7999999999999999999999999999999998875321    111111          11111100            


Q ss_pred             -----CCCCC-----------------HHHHHHHH---HHHHHhcCC--------CeEEEeCCCCCHHHHHHHHHhcCCC
Q 028388           77 -----GKIVP-----------------SEVTIKLL---QKAMEESGN--------DKFLIDGFPRNEENRAAFEAVTKIE  123 (209)
Q Consensus        77 -----~~~~~-----------------~~~~~~~i---~~~~~~~~~--------~~~i~dg~~~~~~~~~~~~~~~~~~  123 (209)
                           +..+.                 ...+++.+   ++.+.....        .++|+||.-        .-....+.
T Consensus        83 ~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRd--------igtvv~p~  154 (712)
T PRK09518         83 GVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRD--------ITTVVAPD  154 (712)
T ss_pred             EEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCc--------cceEEecC
Confidence                 00000                 00011111   111111111        278888741        11113455


Q ss_pred             CcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH--HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhc
Q 028388          124 PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK--VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVF  200 (209)
Q Consensus       124 ~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i  200 (209)
                      .++-|||++++++..+|+..+  ... ...+.+.+.+.  .+.+. +.. .++....+.+++|+ ..+++++++.|...+
T Consensus       155 a~~K~~l~A~~~~Ra~Rr~~~--~~~-~~~~~~~~~~~~Rd~~d~-R~~-~pl~~~~da~~idts~~~~~~v~~~i~~~i  229 (712)
T PRK09518        155 AEVRILLTAREEVRQARRSGQ--DRS-ETPGVVLEDVAARDEADS-KVT-SFLSAADGVTTLDNSDLDFDETLDLLIGLV  229 (712)
T ss_pred             CCeEEEEECCHHHHHHHHHHh--hhc-CCHHHHHHHHHHHhhhcc-ccc-CCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence            789999999999999998877  111 33333333332  23333 222 22333445567776 779999999999998


Q ss_pred             Ccchhh
Q 028388          201 TPKDEK  206 (209)
Q Consensus       201 ~~~~~~  206 (209)
                      ......
T Consensus       230 ~~~~~~  235 (712)
T PRK09518        230 EDAIEE  235 (712)
T ss_pred             Hhhhhh
Confidence            776544

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.45  E-value=3e-11  Score=96.31  Aligned_cols=178  Identities=13%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCc------hHHHHH---HHHHcCCC------CCHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSE------NGTMIQ---NMIKEGKI------VPSE   83 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~------~~~~   83 (209)
                      .+|.+|+++|+|||||||++..|+.++++..+...|.+++.+...-.      ......   .....+..      ....
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            46999999999999999999999999999855333666665444111      000000   11111110      1111


Q ss_pred             H--------------HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhcc-CC
Q 028388           84 V--------------TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRN-QG  147 (209)
Q Consensus        84 ~--------------~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~-~~  147 (209)
                      .              +...+++.+.  .+..+|+||............. .. ...+.|++.+ +.++..+|+..|. ..
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~--eG~SvIIEGVHl~P~~i~~~~~-~~-~~~i~flv~isdeeeH~~Rf~~Ra~~~  408 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQ--EGTSLVLEGVHLVPGYLRHPYQ-AG-ALVVPMLVTLPDEALHRRRFELRDRET  408 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--cCCeEEEECCCCCHHHHHHHHh-cC-CceEEEEEEECCHHHHHHHHHHHhhhc
Confidence            1              1333444444  4899999997666655442222 22 2223345555 5677999999991 11


Q ss_pred             CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ....+...+.+.+...+....-+.+...+.+ +-+|++. ++++..+.+.+.|.+
T Consensus       409 ~~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~-ipvI~n~-nid~tv~~~l~~i~~  461 (475)
T PRK12337        409 GASRPRERYLRHFEEIRLIQDHLLRLARQEG-VPVLPGE-DLDESIDKALEVVLR  461 (475)
T ss_pred             cCCCchhHHHHhHHHHHHHHHHHHHHHHHcC-CCeecCc-cHHHHHHHHHHHHHH
Confidence            1112334444444444433333344444433 4445553 667776666655544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.44  E-value=6.8e-12  Score=89.53  Aligned_cols=160  Identities=19%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHH-HHHHHHcCCCCCHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTM-IQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      .++.+|+|+|+|||||||+++.|+..+.     ..+++.|.+ ++.+..+..+... ......         ....+...
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~   71 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANL   71 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHH
Confidence            3567999999999999999999999883     556777544 3333321111100 000000         01112222


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           93 MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      +. ..+..+++|+..........+.. .. ....+|||++|.+++.+|..+.  ...+..        .+........+ 
T Consensus        72 ~~-~~g~~vi~~~~~~~~~~~~~l~~-~~-~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~--------~i~~~~~~~~~-  139 (175)
T PRK00889         72 LT-RHGVIVLVSAISPYRETREEVRA-NI-GNFLEVFVDAPLEVCEQRDVKGLYAKARAG--------EIKHFTGIDDP-  139 (175)
T ss_pred             HH-hCCCEEEEecCCCCHHHHHHHHh-hc-CCeEEEEEcCCHHHHHHhCcccHHHHHHcC--------CCCCCcccCCC-
Confidence            22 24677888875333444444544 22 3346999999999999995210  001100        00001111112 


Q ss_pred             HHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          171 VQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                        ++. ....+.+.+++.++++++++|.+.|..
T Consensus       140 --~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        140 --YEPPLNPEVECRTDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             --CCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence              122 123455555677999999999988853

>PRK06696 uridine kinase; Validated

Probab=99.43  E-value=1e-12  Score=97.30  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---CCce--ecHhHHHHHHHHc---C--Cc--------hHHHHHHHHHc---
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTH--LSAGDLLRAEIKS---G--SE--------NGTMIQNMIKE---   76 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~--i~~~~~~~~~~~~---~--~~--------~~~~~~~~~~~---   76 (209)
                      ..+|.+|+|.|++||||||+|+.|++.+   |..+  ++.|+++......   +  ..        ....+.+.+..   
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~   98 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG   98 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence            5578999999999999999999999999   4444  4577776433110   0  00        01111111111   


Q ss_pred             -CC--CCC---HHHH-HHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           77 -GK--IVP---SEVT-IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        77 -~~--~~~---~~~~-~~~i~~~~~-~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                       +.  .+.   .+.. ......... ......+|+||......   .+.    ...|++||+++|.+++.+|+..|
T Consensus        99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~---~~~----~~~d~~i~v~~~~e~~~~R~~~R  167 (223)
T PRK06696         99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRP---ELR----DLWDYKIFLDTDFEVSRRRGAKR  167 (223)
T ss_pred             CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhh---hHH----hhCCEEEEEECCHHHHHHHHHHh
Confidence             00  000   0100 011110111 11245788998532211   111    23579999999999999999988

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.43  E-value=2.4e-12  Score=88.83  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHH-HHHHcCCCCCHHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQ-NMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      +|.+|+|+|.|||||||||+.|.++|.     ..+++. |.++..+..+-.+...-+ +.+.         ....+...+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll   70 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL   70 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence            578999999999999999999999993     445655 555544333222211111 1110         012222233


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~  143 (209)
                      .. .+..+|++......+.++...........+.||++||.+++.+|-.+
T Consensus        71 ~~-~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~K  119 (156)
T PF01583_consen   71 AD-QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPK  119 (156)
T ss_dssp             HH-TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTT
T ss_pred             Hh-CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCch
Confidence            32 47888888654445555555542211245799999999999999543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.42  E-value=7.3e-12  Score=91.09  Aligned_cols=158  Identities=17%  Similarity=0.154  Sum_probs=84.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--H
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--Q   90 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~   90 (209)
                      ..+|.+|+|+|++||||||+++.|+..+     +..+++.|++.... .....+.          .....+....+.  .
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~-~~~~~~~----------~~~~~~~~~~l~~~a   89 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGL-CSDLGFS----------DADRKENIRRVGEVA   89 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhh-hhcCCcC----------cccHHHHHHHHHHHH
Confidence            4678999999999999999999999987     34566665543222 1111000          000011112221  1


Q ss_pred             HHHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc---cCCCCCCcHHHHHHHHHHHHhh
Q 028388           91 KAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR---NQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r---~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                      ..+. ..+..+|. .+.. ....++.+..+......++|||++|.+++.+|.. |   ...+. +.       +..+...
T Consensus        90 ~~~~-~~G~~VI~-~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~l~~~~~~-~~-------~~~l~~~  158 (198)
T PRK03846         90 KLMV-DAGLVVLT-AFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KGLYKKARA-GE-------IRNFTGI  158 (198)
T ss_pred             HHHh-hCCCEEEE-EeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hhHHHHhhc-CC-------ccCcccc
Confidence            1121 12555554 4443 3456666666311222348999999999999932 2   00110 00       0011111


Q ss_pred             chhHHHHHh--hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          167 SLPVVQYYE--AKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       167 ~~~~~~~~~--~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                          ...|+  .... +.+|+ +.++++++++|.+.+..
T Consensus       159 ----r~~Y~~p~~ad-~~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        159 ----DSVYEAPESPE-IHLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             ----cccCCCCCCCC-EEEECCCCCHHHHHHHHHHHHHH
Confidence                11144  2233 45664 67999999999988754

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.40  E-value=7e-12  Score=107.64  Aligned_cols=39  Identities=28%  Similarity=0.513  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~   60 (209)
                      ++|.|.|||||||||+|+.||++|++.+++.|.++|...
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            489999999999999999999999999999999999874

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.39  E-value=2.7e-13  Score=91.72  Aligned_cols=106  Identities=28%  Similarity=0.401  Sum_probs=57.5

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hcCC
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----ESGN   98 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~   98 (209)
                      |+|+|+|||||||+|+.|+++++       ..+...... +......-............+....++.....    ....
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG   73 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence            78999999999999999999982       222222121 11110000011122233334433333333322    2347


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEE-EEEecCHHHHHHHHhhc
Q 028388           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFV-LFFDCSEEEMERRILNR  144 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~-i~L~~~~~~~~~R~~~r  144 (209)
                      ..+|+|+........        ...... |+|+||++++.+|+..|
T Consensus        74 ~~~iid~~~~~~~~~--------~~~~~~~i~L~~~~e~~~~R~~~R  112 (129)
T PF13238_consen   74 RNIIIDGILSNLELE--------RLFDIKFIFLDCSPEELRKRLKKR  112 (129)
T ss_dssp             SCEEEEESSEEECET--------TEEEESSEEEE--HHHHHHHHHCT
T ss_pred             CcEEEecccchhccc--------ccceeeEEEEECCHHHHHHHHHhC
Confidence            889999864222110        011122 99999999999999988

...

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.39  E-value=1.1e-12  Score=93.80  Aligned_cols=114  Identities=17%  Similarity=0.106  Sum_probs=69.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh------
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE------   95 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------   95 (209)
                      +|.|.|+|||||||+|+.|++.+ +..+++.|+++...- ... ....-...++.......+.+.+.+......      
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~-~~~-~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~   78 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPED-EIP-VDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF   78 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcc-cCC-hHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence            58999999999999999999999 688999988876431 000 000000001111112223333333222211      


Q ss_pred             ------------------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 ------------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ------------------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                                                    .....+|+||+......  .+.    ...|+.||+++|.+++.+|...|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~--~l~----~l~D~~Ifvd~~~d~~~~Rr~~R  151 (187)
T cd02024          79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK--PLV----DLFDIRYFLRVPYETCKRRREAR  151 (187)
T ss_pred             ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH--HHH----hhcCceeEecCCHHHHHHHHHHc
Confidence                                          12457899997432211  122    24789999999999999999998

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.39  E-value=5.3e-12  Score=91.89  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----   95 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----   95 (209)
                      +|.|.|++||||||+++.|+..+   +..+++.|+++...-..  .........+........+.+...+......    
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~   78 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHE--ELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVE   78 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccc--cHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEe
Confidence            58999999999999999999987   36778887766332110  0000000000111112222222223221110    


Q ss_pred             ------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 ------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                                        .....+|+||.......  .+    ...+|.+||+++|.+++.+|...|
T Consensus        79 ~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~--~~----~~~~d~~i~v~~~~~~~~~R~~~R  139 (198)
T cd02023          79 IPVYDFKTHSRLKETVTVYPADVIILEGILALYDK--EL----RDLMDLKIFVDTDADVRLIRRIER  139 (198)
T ss_pred             ccccccccCcccCCceecCCCCEEEEechhhccch--hH----HhhcCeEEEEECChhHHHHHHHHH
Confidence                              12356777775322211  11    123579999999999988888777

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK07667 uridine kinase; Provisional

Probab=99.38  E-value=2.3e-12  Score=93.32  Aligned_cols=130  Identities=15%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHc----CCchH---------HHHH----HHHHcC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKS----GSENG---------TMIQ----NMIKEG   77 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~----~~~~~---------~~~~----~~~~~~   77 (209)
                      +..+|.|+|+|||||||+|+.|++.++     ..+++.|+++......    .....         ..+.    ..+..+
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~   95 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE   95 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            447999999999999999999999884     4588898877654321    11110         0000    011111


Q ss_pred             CCCCHHHHHHHHHH----HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           78 KIVPSEVTIKLLQK----AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        78 ~~~~~~~~~~~i~~----~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      +.+..+........    .........+|+||.....   ..+..    .+|.+||+++|++++.+|+.+|    .....
T Consensus        96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~----~~d~~v~V~~~~~~~~~R~~~r----~~~~~  164 (193)
T PRK07667         96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD----FFHYMVYLDCPRETRFLRESEE----TQKNL  164 (193)
T ss_pred             CeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh----hceEEEEEECCHHHHHHHHhcc----cHhHH
Confidence            11111110000000    0111124778899864221   12222    3689999999999999999976    33444


Q ss_pred             HHHHHHH
Q 028388          154 ETIRKRF  160 (209)
Q Consensus       154 ~~~~~~~  160 (209)
                      +.+++++
T Consensus       165 ~~~~~r~  171 (193)
T PRK07667        165 SKFKNRY  171 (193)
T ss_pred             HHHHHHh
Confidence            5555543

>COG0645 Predicted kinase [General function prediction only]

Probab=99.37  E-value=1.2e-10  Score=80.35  Aligned_cols=116  Identities=22%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----HHHHHHHHHHHh-c
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----VTIKLLQKAMEE-S   96 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~-~   96 (209)
                      .++++.|.|||||||+|+.|++.+++..+..|.+. +.+.+......      .....++..    ....+....... .
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~ir-k~L~g~p~~~r------~~~g~ys~~~~~~vy~~l~~~A~l~l~   74 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIR-KRLFGVPEETR------GPAGLYSPAATAAVYDELLGRAELLLS   74 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHH-HHhcCCccccc------CCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            67999999999999999999999999999996654 44344111100      001112111    112222222211 2


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+.+||+|+.+....++.....+  ...-+...|.+.++.+++..|+..|
T Consensus        75 ~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR  124 (170)
T COG0645          75 SGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR  124 (170)
T ss_pred             CCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence            49999999987777777766654  2223455799999999999999988

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.36  E-value=1.1e-11  Score=102.76  Aligned_cols=164  Identities=15%  Similarity=0.120  Sum_probs=89.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC------ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH--H
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL--L   89 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i   89 (209)
                      -.++.+|+|+|+|||||||+++.|+++++.      .+++.| .+++.+.....+...-++.          ....+  +
T Consensus       389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~----------~~~~l~~~  457 (568)
T PRK05537        389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDL----------NILRIGFV  457 (568)
T ss_pred             cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHH----------HHHHHHHH
Confidence            346779999999999999999999999986      777775 4455433222111111110          00111  1


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhch
Q 028388           90 QKAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (209)
Q Consensus        90 ~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (209)
                      ...+. ..+.++|+|........+..+..+ .......+|||++|.+++.+|..+.   ......   ...+..+.....
T Consensus       458 a~~v~-~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~---~~~i~~l~~~R~  530 (568)
T PRK05537        458 ASEIT-KNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAR---EGKIKGFTGISD  530 (568)
T ss_pred             HHHHH-hCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccch---hchhhccccccc
Confidence            22122 247899999643333333333332 1112235899999999999996432   100000   011112222222


Q ss_pred             hHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          169 PVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       169 ~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      +   ++.....-+.+|+ ..++++++++|...|..
T Consensus       531 ~---yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        531 P---YEPPANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             c---ccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            2   2321222356665 46899999999988754

>COG4639 Predicted kinase [General function prediction only]

Probab=99.36  E-value=2.3e-11  Score=82.35  Aligned_cols=114  Identities=20%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      +.++++.|+|||||||+++..  ..+...++.+++-...-.  . .+.   +.....+....+.+.+.++..+.  .+..
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~--~-~~~---e~sqk~~~~~~~~l~~~l~qrl~--~Gk~   71 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGV--S-ASK---ENSQKNDELVWDILYKQLEQRLR--RGKF   71 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhh--c-hhh---hhccccHHHHHHHHHHHHHHHHH--cCCe
Confidence            357999999999999999984  567888888775543310  0 000   00011112223445666666666  5899


Q ss_pred             EEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .|+|++...++++..+.++  ...-....|+++.|.+.|.+|.+.|
T Consensus        72 tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~  117 (168)
T COG4639          72 TIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR  117 (168)
T ss_pred             EEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence            9999998888877776665  3334456899999999999999866

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.33  E-value=1.6e-12  Score=94.30  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC---------ceecHhHHHHHHHHcCCchHHHHHH-HHHcCCCCCHHHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY---------THLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~---------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~   92 (209)
                      +|.|+|++||||||+|+.|++.|+.         .+++.++++........ .+..... .+........+.+...+...
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~L   79 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKAL   79 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHHH
Confidence            6899999999999999999999972         24555554433211000 0000000 00111222334444444433


Q ss_pred             HHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           93 MEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        93 ~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ...                      .+...+|+||........  +.    .-.|+.|||+++.++++.|...|
T Consensus        80 ~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~--l~----~l~D~~ifld~~~~~~l~Rri~R  147 (194)
T PF00485_consen   80 KNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEE--LR----DLFDLKIFLDADEDLRLERRIQR  147 (194)
T ss_dssp             HTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHC--HG----GG-SEEEEEEE-HHHHHHHHHHH
T ss_pred             hCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeee--ec----ccceeEEEecccHHHHHHHHhhh
Confidence            211                      124678899864332111  11    23679999999999988888888

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.32  E-value=3.6e-12  Score=92.75  Aligned_cols=118  Identities=21%  Similarity=0.366  Sum_probs=65.5

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-------CHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-------PSEVTI   86 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~   86 (209)
                      ...+|.++++.|+|||||||++..+.+.+   ++.+|+.|++ +...+   .+......   .....       ...+..
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~-r~~~p---~~~~~~~~---~~~~~~~~~~~~a~~~~~   83 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEF-RQFHP---DYDELLKA---DPDEASELTQKEASRLAE   83 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGG-GGGST---THHHHHHH---HCCCTHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHH-HHhcc---chhhhhhh---hhhhhHHHHHHHHHHHHH
Confidence            45789999999999999999999999987   6788888664 33211   11111110   00000       011224


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHH-HHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRA-AFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~-~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+++..+.  .+..+|+|+......... .+..+  ..... .++++.+|++..+.|+..|
T Consensus        84 ~~~~~a~~--~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v-~l~~v~~~~e~s~~rv~~R  141 (199)
T PF06414_consen   84 KLIEYAIE--NRYNIIFEGTLSNPSKLRKLIREAKAAGYKV-ELYYVAVPPELSIERVRQR  141 (199)
T ss_dssp             HHHHHHHH--CT--EEEE--TTSSHHHHHHHHHHHCTT-EE-EEEEE---HHHHHHHHHHH
T ss_pred             HHHHHHHH--cCCCEEEecCCCChhHHHHHHHHHHcCCceE-EEEEEECCHHHHHHHHHHH
Confidence            44555555  478999999777665554 33333  33332 3788899999999999999

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.32  E-value=7e-11  Score=81.96  Aligned_cols=109  Identities=20%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CC--ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAMEE   95 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l---~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~   95 (209)
                      +|+|+|+|||||||+++.|++.+   +.  .+++. +.+++.+.....+...        .  ..+....+.  ...+. 
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~-   68 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLA-   68 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHH-
Confidence            47899999999999999999998   53  34554 4454433221111100        0  011111111  11122 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhh
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN  143 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~  143 (209)
                      ..+..+|+|........+..+..+....+..++||++|.+++.+|..+
T Consensus        69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            247889999866666666666653223455699999999999999654

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.32  E-value=3e-10  Score=85.17  Aligned_cols=149  Identities=18%  Similarity=0.234  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hcCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---ESGN   98 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~   98 (209)
                      .+|+|+|.+||||||..+.| +-+||.+|+.                           +|..++.++++....   ....
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~   53 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK   53 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence            47999999999999999999 5588888853                           333333344433321   1124


Q ss_pred             CeEEEeCCCCCH-H-HHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           99 DKFLIDGFPRNE-E-NRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        99 ~~~i~dg~~~~~-~-~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      -.+++|--.... . ....+..+ .....-.++||+|+.+++++|...-.+..+-.......+.+...++.    +....
T Consensus        54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~----L~~lr  129 (284)
T PF03668_consen   54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKEREL----LEPLR  129 (284)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHH----HHHHH
Confidence            566788432211 1 11122222 22233359999999999999999862223322222233334444444    34446


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..+++++..++.++.++-+.|.+.+..
T Consensus       130 ~~Ad~vIDTs~l~~~~Lr~~i~~~~~~  156 (284)
T PF03668_consen  130 ERADLVIDTSNLSVHQLRERIRERFGG  156 (284)
T ss_pred             HhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence            666665555678999999999988753

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PHA03132 thymidine kinase; Provisional

Probab=99.30  E-value=9.9e-11  Score=96.04  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCC-HH--------------
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVP-SE--------------   83 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~--------------   83 (209)
                      .++|+|+|+.||||||+++.|++.++..++...+=......-.......+.+....+.  ... ..              
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pfl  336 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPFR  336 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHHH
Confidence            5789999999999999999999998533322100000000000112222333222111  011 11              


Q ss_pred             HHHHHHHHH---HHh-----cCCCeEEEeCCCCCHHH-----------------HHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388           84 VTIKLLQKA---MEE-----SGNDKFLIDGFPRNEEN-----------------RAAFEAVTKIEPEFVLFFDCSEEEME  138 (209)
Q Consensus        84 ~~~~~i~~~---~~~-----~~~~~~i~dg~~~~~~~-----------------~~~~~~~~~~~~~~~i~L~~~~~~~~  138 (209)
                      .....++..   ...     ..+..||+|.++.+-.-                 ...+..+....||++|||+++++++.
T Consensus       337 ~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~al  416 (580)
T PHA03132        337 ALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEENL  416 (580)
T ss_pred             HHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHHH
Confidence            111111111   111     23789999987643211                 11112112246899999999999999


Q ss_pred             HHHhhccCCCCCC
Q 028388          139 RRILNRNQGREDD  151 (209)
Q Consensus       139 ~R~~~r~~~~~~~  151 (209)
                      +|+.+|  ++..+
T Consensus       417 kRIkkR--gR~~E  427 (580)
T PHA03132        417 RRVKKR--GRKEE  427 (580)
T ss_pred             HHHHhc--Cchhh
Confidence            999999  55433

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.29  E-value=5.3e-11  Score=100.69  Aligned_cols=163  Identities=19%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      ..+|.+|+++|+|||||||+|+.|+++++     +.+++.|+ ++..+..+..+...-+          ...+..+...+
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~~~~~~~~r----------~~~~~~l~~~a  525 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRDLGFSDADR----------VENIRRVAEVA  525 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCCCCCCHHHH----------HHHHHHHHHHH
Confidence            34689999999999999999999999983     46677744 5544332211111110          01111111111


Q ss_pred             H-HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           93 M-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        93 ~-~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      . ....+..+|+|........++.+..+....+..+|||++|.+++.+|. .|  +......   ...+..+.....   
T Consensus       526 ~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r--~L~~~~~---~~~l~~l~~~r~---  596 (632)
T PRK05506        526 RLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK--GLYAKAR---AGEIKNFTGIDS---  596 (632)
T ss_pred             HHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc--chhhhcc---cccccccccccc---
Confidence            1 112478899997655556666555522122457999999999999994 23  1110000   011111111111   


Q ss_pred             HHHhh-cCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388          172 QYYEA-KGKVRKIDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       172 ~~~~~-~~~~~~id~-~~~~ee~~~~i~~~i~  201 (209)
                       .|.. ....+.+|+ +.+++++++.|.+.|.
T Consensus       597 -~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~  627 (632)
T PRK05506        597 -PYEAPENPELRLDTTGRSPEELAEQVLELLR  627 (632)
T ss_pred             -CCCCCCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence             1332 223456665 6799999999998874

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.29  E-value=2.1e-11  Score=89.90  Aligned_cols=118  Identities=15%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-   94 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-   94 (209)
                      +|.|.|++||||||+|+.|+..++       ..+++.|+++...... ...+.  .+..........+.+...+..... 
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~-~~~~~--~~~~g~p~~~d~~~l~~~L~~l~~g   77 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKEL-IERGL--MDRKGFPESYDMEALLKFLKDIKSG   77 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHH-HHhhh--hhcCCCcccCCHHHHHHHHHHHHCC
Confidence            588999999999999999999883       3567777765322100 00000  000000111222222222222211 


Q ss_pred             -----------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           95 -----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        95 -----------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                                             ..+...+|+||..........+.. .....|+.||+++|.+++.+|+.+|
T Consensus        78 ~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~-l~~~~D~~ifvd~~~~~~~~rl~~R  149 (220)
T cd02025          78 KKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLF-VSDFFDFSIYVDADEDDIEKWYIKR  149 (220)
T ss_pred             CCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhh-HHHhCCeEEEEECCHHHHHHHHHHH
Confidence                                   012457889996433221111111 1124678999999999988777777

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN02348 phosphoribulokinase

Probab=99.29  E-value=2.6e-11  Score=94.89  Aligned_cols=132  Identities=15%  Similarity=0.237  Sum_probs=73.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC--------------------ceecHhHHHHHHHHcCCchHHHHHHHHHcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--------------------THLSAGDLLRAEIKSGSENGTMIQNMIKEGK   78 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~--------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
                      .+|.+|.|.|++||||||+++.|++.++.                    .+++.|+++......-...+.   . ..+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~---t-~ldP~  122 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGV---T-ALDPR  122 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCC---c-cCCcc
Confidence            57889999999999999999999999963                    367787765311000000000   0 00001


Q ss_pred             CCCHHHHHHHHHHHHHh---------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388           79 IVPSEVTIKLLQKAMEE---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (209)
Q Consensus        79 ~~~~~~~~~~i~~~~~~---------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~  137 (209)
                      ....+.+.+.+......                     .+...+|++|.......     . ....+|+.||++++.++.
T Consensus       123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e-----~-lr~l~D~~IyVd~~~dvr  196 (395)
T PLN02348        123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDE-----R-VRDLLDFSIYLDISDDVK  196 (395)
T ss_pred             cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCc-----c-ccccCcEEEEEECCHHHH
Confidence            11122333333322211                     12467888985322111     1 223468999999999999


Q ss_pred             HHHHhhccCCCCCCcHHHHHHHH
Q 028388          138 ERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus       138 ~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                      ..|..+|...+.....+...+++
T Consensus       197 l~RRI~RD~~eRG~S~EeV~~~i  219 (395)
T PLN02348        197 FAWKIQRDMAERGHSLESIKASI  219 (395)
T ss_pred             HHHHHHhhHhhcCCCHHHHHHHH
Confidence            88877771111123445555544

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.27  E-value=1.3e-10  Score=85.01  Aligned_cols=150  Identities=17%  Similarity=0.258  Sum_probs=78.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCC----CCCHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK----IVPSEVTIK   87 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   87 (209)
                      ....+.+|+++|.||.|||++|+.|+..|+     ..+++.++.=|+....... .    .++...+    ..-..+...
T Consensus         8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-~----~ff~p~n~~~~~~R~~~a~~   82 (222)
T PF01591_consen    8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-A----EFFDPDNEEAKKLREQIAKE   82 (222)
T ss_dssp             -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S--G----GGGSTT-HHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccc-c----ccCCCCChHHHHHHHHHHHH
Confidence            345677999999999999999999999885     4668888866666433111 0    0000000    000111122


Q ss_pred             H---HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec---CHHHHHHHHhhcc-C------CCCCCcHH
Q 028388           88 L---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC---SEEEMERRILNRN-Q------GREDDNVE  154 (209)
Q Consensus        88 ~---i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~---~~~~~~~R~~~r~-~------~~~~~~~~  154 (209)
                      +   +...+....+++.|+|+...+.+.+..+.+........++|+++   +++.+.+.+..-. .      ..++...+
T Consensus        83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~~~~e~A~~  162 (222)
T PF01591_consen   83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKGMDPEEAIE  162 (222)
T ss_dssp             HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTTS-HHHHHH
T ss_pred             HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCcccccCCHHHHHH
Confidence            2   22233444589999999999988887766641111134666665   4444555554431 1      11233557


Q ss_pred             HHHHHHHHHHhhchhHH
Q 028388          155 TIRKRFKVFLESSLPVV  171 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~  171 (209)
                      ++.+|+..|.....|+-
T Consensus       163 Df~~RI~~Ye~~YEpl~  179 (222)
T PF01591_consen  163 DFKKRIEHYEKVYEPLD  179 (222)
T ss_dssp             HHHHHHHHHHTT-----
T ss_pred             HHHHHHHhhcccccccc
Confidence            88889999988887774

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PRK05439 pantothenate kinase; Provisional

Probab=99.26  E-value=1.7e-11  Score=93.91  Aligned_cols=124  Identities=14%  Similarity=0.182  Sum_probs=70.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (209)
                      ...+|.+|.|+|+|||||||+|+.|++.++       ..+++.|+++...-.-. ..+  .....+....+..+.+.+.+
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~-~~~--l~~~kg~Pes~D~~~l~~~L  158 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLE-ERG--LMKRKGFPESYDMRALLRFL  158 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHh-hhh--ccccCCCcccccHHHHHHHH
Confidence            446789999999999999999999998764       35688888764321100 000  00000111222233333333


Q ss_pred             HHHHHh------------------------cCCCeEEEeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           90 QKAMEE------------------------SGNDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        90 ~~~~~~------------------------~~~~~~i~dg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ......                        .....+|++|.... ......+.. .....|+.||+++|.+++.+|+..|
T Consensus       159 ~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~-l~d~~D~~IfVda~~~~~~~w~i~R  237 (311)
T PRK05439        159 SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLF-VSDFFDFSIYVDADEDLIEKWYIER  237 (311)
T ss_pred             HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchh-hHHhCCEEEEEECCHHHHHHHHHHH
Confidence            322210                        12457788885422 211101111 1224689999999999998888777

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.25  E-value=1.5e-11  Score=87.81  Aligned_cols=110  Identities=18%  Similarity=0.189  Sum_probs=65.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--   95 (209)
                      +|+|.|+|||||||+|+.|++.+     +..+++.|+++..........+     .......+..+.+.+.+......  
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g-----~~d~~~~~d~~~l~~~l~~l~~~~~   75 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDG-----NYDFESILDLDLLNKNLHDLLNGKE   75 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCC-----CCCCCccccHHHHHHHHHHHHCCCe
Confidence            58999999999999999999997     4578999998874300000000     00000011223333333332211  


Q ss_pred             ---------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHH-HHHHHhhc
Q 028388           96 ---------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE-MERRILNR  144 (209)
Q Consensus        96 ---------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~-~~~R~~~r  144 (209)
                                           .+...+|+||......   .+..    -.|+.||++++.+. +..|...|
T Consensus        76 ~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~---~l~~----~~d~~I~vd~~~~~~rl~rri~R  139 (179)
T cd02028          76 VELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE---RLRS----LLDIRVAVSGGVHLNRLLRRVVR  139 (179)
T ss_pred             eecccceeECCccCCCceEEeCCCCEEEEecHHhcCH---hHHh----hcCEEEEEeCCccHHHHHHHHHH
Confidence                                 1246788999654332   2222    26899999999998 66666655

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=99.24  E-value=5.8e-10  Score=78.25  Aligned_cols=67  Identities=19%  Similarity=0.204  Sum_probs=42.1

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhhchhHHHHHh--hcCcEEEEcCCCCh
Q 028388          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSLPVVQYYE--AKGKVRKIDAAKPV  189 (209)
Q Consensus       120 ~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~~  189 (209)
                      ....+|.+|||.++|++|.+|+..|  +|.++  .+-.+.+.++..++.|.- ...+.  ...+++++|++...
T Consensus       150 ~~v~~dgiIYLrasPetc~~Ri~~R--~R~EE~gipL~YLe~LH~~HE~WLi-~~~f~~lq~vpvLVLDad~n~  220 (244)
T KOG4235|consen  150 MDVSLDGIIYLRASPETCYKRIYLR--AREEEKGIPLKYLEALHELHESWLI-KLHFPNLQAVPVLVLDADHNM  220 (244)
T ss_pred             cccccceEEEeecChHHHHHHHHHH--hhhhhcCCcHHHHHHHHHHHHHHHH-HHhhhHhhcCCeEEEecccch
Confidence            3467899999999999999999999  33322  333333344444444322 22233  34478999976544

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.1e-09  Score=74.60  Aligned_cols=163  Identities=17%  Similarity=0.234  Sum_probs=97.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc----eecHhHHHHHHHHcCCchH-----HHHHHHHHcCCC-CCHHH-----
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT----HLSAGDLLRAEIKSGSENG-----TMIQNMIKEGKI-VPSEV-----   84 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~----~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~-----   84 (209)
                      ...+|++.||+|+||-|+.......+...    ++.- -+.+.. ..+.+..     .++...-..+.+ +++..     
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR-vITRpa-~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Y   81 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR-VITRPA-DAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSY   81 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE-EecccC-CCCcccccccCHHHHHHHhhcCceeEEehhcCccc
Confidence            46799999999999999999999888422    2110 111111 1111111     111111111100 00000     


Q ss_pred             -HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           85 -TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        85 -~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                       +-.-|...+.  .+..+|+.|.-....+..   + . +.--+++.+.++++++.+|+..|  ||  ++.+.+..|+..-
T Consensus        82 gip~eId~wl~--~G~vvl~NgSRa~Lp~ar---r-r-y~~Llvv~ita~p~VLaqRL~~R--GR--Es~eeI~aRL~R~  150 (192)
T COG3709          82 GIPAEIDLWLA--AGDVVLVNGSRAVLPQAR---R-R-YPQLLVVCITASPEVLAQRLAER--GR--ESREEILARLARA  150 (192)
T ss_pred             cCchhHHHHHh--CCCEEEEeccHhhhHHHH---H-h-hhcceeEEEecCHHHHHHHHHHh--cc--CCHHHHHHHHHhh
Confidence             0122344444  478899988643333322   2 2 22346999999999999999998  66  4567777776553


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...       ....++++.||+++.++...+++...+..
T Consensus       151 a~~-------~~~~~dv~~idNsG~l~~ag~~ll~~l~~  182 (192)
T COG3709         151 ARY-------TAGPGDVTTIDNSGELEDAGERLLALLHQ  182 (192)
T ss_pred             ccc-------ccCCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence            331       13356899999999999999999888864

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.24  E-value=1.5e-10  Score=89.92  Aligned_cols=122  Identities=15%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHc---CCchH---HHHHH--------H---HHcCCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKS---GSENG---TMIQN--------M---IKEGKI   79 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~---~~~~~---~~~~~--------~---~~~~~~   79 (209)
                      +.+++|+|||||||+++.|++.+.      ..+++.||++.+....   +....   ..+++        .   +..|..
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~   80 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE   80 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            368999999999999999998875      3489999988422111   11000   11111        1   111222


Q ss_pred             CCH------HHH--------------------HHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEE
Q 028388           80 VPS------EVT--------------------IKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLF  129 (209)
Q Consensus        80 ~~~------~~~--------------------~~~i~~~~~~--~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~  129 (209)
                      ...      ...                    ...+.+....  .....+|+|+.+.....+..+..+  ....+..+||
T Consensus        81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~  160 (340)
T TIGR03575        81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF  160 (340)
T ss_pred             ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence            111      111                    1111122211  124578999877777666655554  3334557999


Q ss_pred             EecCHHHHHHHHhhc
Q 028388          130 FDCSEEEMERRILNR  144 (209)
Q Consensus       130 L~~~~~~~~~R~~~r  144 (209)
                      +++|.+++.+|..+|
T Consensus       161 ld~ple~~l~RN~~R  175 (340)
T TIGR03575       161 LDCPVESCLLRNKQR  175 (340)
T ss_pred             EeCCHHHHHHHHhcC
Confidence            999999999999988

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.24  E-value=1e-10  Score=86.93  Aligned_cols=121  Identities=15%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ce-ecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----TH-LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA   92 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   92 (209)
                      .+|.+|.|.|++|||||||++.|+..+..     .+ ++.|++........ ..+  .............+.....+...
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~-~~g--~~~~~~~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLD-AHG--LRPRKGAPETFDVAGLAALLRRL  107 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHH-hcc--cccccCCCCCCCHHHHHHHHHHH
Confidence            56889999999999999999999998852     22 55555432210000 000  00000011111222222222222


Q ss_pred             HHh------------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           93 MEE------------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        93 ~~~------------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ...                        .....+|+||....... ..+.. ....+|++||+++|.+++.+|+..|
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~-~~~~~-l~~~~D~vi~v~~~~~~~~~R~~~R  181 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE-EPWRR-LAGLFDFTIFLDAPAEVLRERLVAR  181 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeecc-ccHHH-HHhhCCEEEEEECCHHHHHHHHHHH
Confidence            110                        02456788886543321 11121 1234689999999999999999988

>PRK15453 phosphoribulokinase; Provisional

Probab=99.21  E-value=1e-10  Score=87.79  Aligned_cols=40  Identities=20%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~   57 (209)
                      +.++++|+|+|.|||||||+++.|++.++     ..+++.|++.+
T Consensus         2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            35688999999999999999999998884     45677777664

>PRK07429 phosphoribulokinase; Provisional

Probab=99.20  E-value=2.6e-10  Score=88.50  Aligned_cols=39  Identities=26%  Similarity=0.415  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL   56 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~   56 (209)
                      +.+|.+|.|.|++||||||+++.|++.++   ..+++.|+++
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            45789999999999999999999999987   5567777764

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=99.19  E-value=1.8e-09  Score=79.24  Aligned_cols=147  Identities=20%  Similarity=0.267  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH---hcCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME---ESGN   98 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~   98 (209)
                      .+|+|+|.+|||||+-.+.| +-+||-+++.                           +|..++-++++-...   ..+.
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k   53 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK   53 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence            47999999999999999999 4588877743                           333333333331111   1124


Q ss_pred             CeEEEeCCCC----CH-HHHHHHHHhcC-CCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           99 DKFLIDGFPR----NE-ENRAAFEAVTK-IEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        99 ~~~i~dg~~~----~~-~~~~~~~~~~~-~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                      -.+++|--.+    .. +....+.+ .. ..+ .++||+++.+++++|...-.+..+-.....+.+.+...++...|+  
T Consensus        54 vAv~iDiRs~~~~~~l~~~l~~l~~-~~~~~~-~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL--  129 (286)
T COG1660          54 VAVVIDVRSREFFGDLEEVLDELKD-NGDIDP-RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL--  129 (286)
T ss_pred             EEEEEecccchhHHHHHHHHHHHHh-cCCCCc-eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH--
Confidence            5677883211    11 11222222 21 223 499999999999999997522333333333555555555655554  


Q ss_pred             HHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       173 ~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                        .+.+.+++..++.++.++.+.|...+..
T Consensus       130 --k~~A~~vIDTs~ls~~~Lr~~i~~~f~~  157 (286)
T COG1660         130 --REIADLVIDTSELSVHELRERIRTRFLG  157 (286)
T ss_pred             --HHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence              4444455555588999999999998875

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=99.19  E-value=4e-10  Score=79.48  Aligned_cols=173  Identities=16%  Similarity=0.159  Sum_probs=92.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCc-----------------hHHHHHHHHHcCCCCC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSE-----------------NGTMIQNMIKEGKIVP   81 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~   81 (209)
                      |..+|.|.|.+.|||||||+.|...+ |..+|+-||++...-.-...                 +...+.-.+......+
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~   82 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP   82 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence            45689999999999999999999988 57889988887654221000                 1122222233323322


Q ss_pred             HHHHHHHHHH--------H--HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           82 SEVTIKLLQK--------A--MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        82 ~~~~~~~i~~--------~--~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                      . ....++..        .  ......+.+++|||........      ....+..|++..|-+++.+|...|..-.+.+
T Consensus        83 ~-ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~------~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~  155 (225)
T KOG3308|consen   83 E-AREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQ------VDLFDRIIMLTLDYETCKRRREARTYYPPDD  155 (225)
T ss_pred             h-HhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchh------hhhhhhheeeeccHHHHHHhhcccccCCCCC
Confidence            2 11111111        1  1112267899999753221111      1124568999999999999999882111111


Q ss_pred             cHHHHHH-HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          152 NVETIRK-RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       152 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      . ..+.- -+-.|.++... .. +........+|++.+-+..-.+|...+..
T Consensus       156 t-gyfd~~~~P~Y~~~~~~-~~-d~~~h~~~flngdvs~e~~~~~v~~~i~~  204 (225)
T KOG3308|consen  156 T-GYFDPVVWPHYEKNFEE-AR-DRSRHDSLFLNGDVSEEKLDDKVNESINQ  204 (225)
T ss_pred             C-ccccCccchHHHHHHHH-HH-hhcccceeeecccchhhhchhhhhhhhcc
Confidence            1 00000 00011111110 01 11112467888887777777777766643

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.17  E-value=1.7e-10  Score=82.91  Aligned_cols=165  Identities=19%  Similarity=0.322  Sum_probs=91.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCH--------H
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPS--------E   83 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~--------~   83 (209)
                      ++++|+|+||+|||||||++.|.+.++-.+ .......|....+   +..+    .+.+......+.++..        .
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG   80 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG   80 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence            467899999999999999999998875211 1111122221110   1110    1222222222221110        0


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecC-HHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCS-EEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                      .....+...+.  .+..+|+|..   ..-...+.. ....| ++||+.++ .+.+.+|+..|    ..+..+.+.+++..
T Consensus        81 t~~~~i~~~~~--~gk~~il~~~---~~g~~~L~~-~~~~~-~~IfI~~~s~~~l~~~l~~r----~~~~~~~i~~r~~~  149 (183)
T PF00625_consen   81 TSKSAIDKVLE--EGKHCILDVD---PEGVKQLKK-AGFNP-IVIFIKPPSPEVLKRRLRRR----GDESEEEIEERLER  149 (183)
T ss_dssp             EEHHHHHHHHH--TTTEEEEEET---HHHHHHHHH-CTTTE-EEEEEEESSHHHHHHHHHTT----THCHHHHHHHHHHH
T ss_pred             hccchhhHhhh--cCCcEEEEcc---HHHHHHHHh-cccCc-eEEEEEccchHHHHHHHhcc----ccccHHHHHHHHHH
Confidence            11455666666  4788888843   444555555 54444 58888766 57777777655    23455666666665


Q ss_pred             HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .....    ..+.. -..++.| + ++++++.+|.+.|..
T Consensus       150 ~~~~~----~~~~~-fd~vi~n-~-~le~~~~~l~~ii~~  182 (183)
T PF00625_consen  150 AEKEF----EHYNE-FDYVIVN-D-DLEEAVKELKEIIEQ  182 (183)
T ss_dssp             HHHHH----GGGGG-SSEEEEC-S-SHHHHHHHHHHHHHH
T ss_pred             HHHHH----hHhhc-CCEEEEC-c-CHHHHHHHHHHHHHh
Confidence            54422    22222 2344444 3 799999999988753

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.17  E-value=1.8e-10  Score=87.73  Aligned_cols=122  Identities=14%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHH--HcCCchHHHHHHHHHcCCCCCHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEI--KSGSENGTMIQNMIKEGKIVPSEVTIK   87 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (209)
                      .+.+|.+|.|.|++||||||+++.|+..+.       ..+++.|+++...-  ....     ..+.......+..+.+..
T Consensus        58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g-----~~~~~g~P~s~D~~~l~~  132 (290)
T TIGR00554        58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERN-----LMKKKGFPESYDMHRLVK  132 (290)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcC-----CccccCCChhccHHHHHH
Confidence            356789999999999999999999877763       34567766554221  1000     000000111111122222


Q ss_pred             HHHHHHH------------------------hcCCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHH
Q 028388           88 LLQKAME------------------------ESGNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEME  138 (209)
Q Consensus        88 ~i~~~~~------------------------~~~~~~~i~dg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~~~~~  138 (209)
                      .+.....                        ..+...+|++|........     ..+.. .....|+.|||++|.+++.
T Consensus       133 ~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~-~~d~~D~~IyvDa~~d~~~  211 (290)
T TIGR00554       133 FLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVF-VSDFVDFSIYVDAEEDLLQ  211 (290)
T ss_pred             HHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHH-HHHhCCEEEEEECCHHHHH
Confidence            2222111                        0124677889864321110     01111 1235789999999999999


Q ss_pred             HHHhhc
Q 028388          139 RRILNR  144 (209)
Q Consensus       139 ~R~~~r  144 (209)
                      +|..+|
T Consensus       212 ~w~i~R  217 (290)
T TIGR00554       212 TWYINR  217 (290)
T ss_pred             HHHHHH
Confidence            888877

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PLN02772 guanylate kinase

Probab=99.17  E-value=1.4e-09  Score=85.41  Aligned_cols=169  Identities=20%  Similarity=0.295  Sum_probs=95.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCHH--------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSE--------   83 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~--------   83 (209)
                      +.++|+|+||+||||+||++.|.+.+.. ..++.....|.....   +..+    .+.+...+..+.++...        
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG  213 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG  213 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence            4568999999999999999999887632 112222333332111   1000    02233333333332221        


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                      ...+.++..+.  .++.+|+|-   ...-...+.. ....+-.++++..+.+++.+|+..|  +.  ...+.+.+|+..+
T Consensus       214 Tsk~~V~~vl~--~Gk~vILdL---D~qGar~Lr~-~~l~~v~IFI~PPSlEeLe~RL~~R--Gt--eseE~I~kRL~~A  283 (398)
T PLN02772        214 TSIEAVEVVTD--SGKRCILDI---DVQGARSVRA-SSLEAIFIFICPPSMEELEKRLRAR--GT--ETEEQIQKRLRNA  283 (398)
T ss_pred             ccHHHHHHHHH--hCCcEEEeC---CHHHHHHHHH-hcCCeEEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHH
Confidence            12556666666  478889883   3333444444 3334444455555689999999987  43  3567888888776


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ......  ..+......+++| + ++++.++++.+.|..
T Consensus       284 ~~Ei~~--~~~~~~fD~vIvN-D-dLe~A~~~L~~iL~~  318 (398)
T PLN02772        284 EAELEQ--GKSSGIFDHILYN-D-NLEECYKNLKKLLGL  318 (398)
T ss_pred             HHHHhh--ccccCCCCEEEEC-C-CHHHHHHHHHHHHhh
Confidence            442110  0011122344444 4 799999999988754

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=99.10  E-value=3.3e-10  Score=67.93  Aligned_cols=60  Identities=20%  Similarity=0.450  Sum_probs=44.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      +|+|+|+|||||||+++.|++.+   +..+++.                                               
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~-----------------------------------------------   33 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE-----------------------------------------------   33 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence            47899999999999999999985   2333322                                               


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec
Q 028388          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC  132 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~  132 (209)
                      .+|+||+........  .. ....+|+.|||++
T Consensus        34 ~~I~eg~~~~~~~~~--~~-~~~~~d~~Iyld~   63 (69)
T cd02019          34 IVILEGLYASYKSRD--AR-IRDLADLKIYLDA   63 (69)
T ss_pred             EEEecchhhhhhhHH--hh-ccccccEEEEEEe
Confidence            899999765444322  22 4567899999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.03  E-value=3.2e-09  Score=80.72  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=28.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLL   56 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~   56 (209)
                      +|.|+|++||||||+++.|+..++   ..+++.|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            488999999999999999998874   5567777654

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.00  E-value=4.8e-09  Score=78.30  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~   57 (209)
                      +|+|+|++||||||+++.|++.++     ..+++.|++++
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998874     46788877766

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.00  E-value=2.4e-08  Score=68.13  Aligned_cols=151  Identities=18%  Similarity=0.203  Sum_probs=87.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      |.+.++.|+.||||||+...+-..+  +..+|+.|.+..+.-+.... ...+..    ++     .....+...+.  .+
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~-~~~i~A----~r-----~ai~~i~~~I~--~~   69 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPT-SAAIQA----AR-----VAIDRIARLID--LG   69 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCch-HHHHHH----HH-----HHHHHHHHHHH--cC
Confidence            5678889999999999988765544  47788897766655222221 111110    00     11223333333  47


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      .++.++.......-.......  ......+.++.-.+.+..++|++.| ..|.++-+.+.++.|+.   +...-+..++.
T Consensus        70 ~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~---rsle~l~~~l~  146 (187)
T COG4185          70 RPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYR---RSLELLAQALT  146 (187)
T ss_pred             CCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHH---HHHHHHHHHHh
Confidence            888888654443333333332  3333333444445778999999999 55666667777777643   33333334445


Q ss_pred             hcCcEEEEcCC
Q 028388          176 AKGKVRKIDAA  186 (209)
Q Consensus       176 ~~~~~~~id~~  186 (209)
                      -.+...+.|++
T Consensus       147 l~dr~~IydNS  157 (187)
T COG4185         147 LADRATIYDNS  157 (187)
T ss_pred             hcceeEEecCC
Confidence            55566777764

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.99  E-value=2.9e-09  Score=87.40  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-CceecHhHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDL   55 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-~~~i~~~~~   55 (209)
                      ..+.+|.|.|++||||||+++.|+..+. ...|+.|++
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            3568999999999999999999999884 456777665

>PHA00729 NTP-binding motif containing protein

Probab=98.95  E-value=7.2e-09  Score=75.77  Aligned_cols=113  Identities=15%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ......|+|+|+||+||||+|..|++.++..  .+..++.....  ..            ..-.++.+.+...+......
T Consensus        14 ~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~--~~------------~~~fid~~~Ll~~L~~a~~~   79 (226)
T PHA00729         14 NNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQY--VQ------------NSYFFELPDALEKIQDAIDN   79 (226)
T ss_pred             cCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhc--CC------------cEEEEEHHHHHHHHHHHHhc
Confidence            3445679999999999999999999987521  12222111100  00            01122333344445444432


Q ss_pred             cC-CCeEEEeCCCCCHHH---H----H---HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 SG-NDKFLIDGFPRNEEN---R----A---AFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ~~-~~~~i~dg~~~~~~~---~----~---~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .. ...+|+|++..-...   -    .   .+..+....+++++++.++++.+.+++..|
T Consensus        80 ~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~R  139 (226)
T PHA00729         80 DYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREK  139 (226)
T ss_pred             CCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhC
Confidence            22 234689973211111   1    0   111112235788999999999999999998

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=98.90  E-value=1.8e-08  Score=68.04  Aligned_cols=118  Identities=18%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (209)
                      +.+...++.+|+|+|.+||||||+|-.|.+.|.    ..|+--+|=+|.-+..+-.+...-+  .         .-+..+
T Consensus        24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR--~---------ENIRRi   92 (207)
T KOG0635|consen   24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDR--N---------ENIRRI   92 (207)
T ss_pred             HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhh--h---------hhHHHH
Confidence            456677899999999999999999999998873    4555555656655444322221111  0         001111


Q ss_pred             HHHHHhcCCCeEE-EeCCCCC-HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388           90 QKAMEESGNDKFL-IDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (209)
Q Consensus        90 ~~~~~~~~~~~~i-~dg~~~~-~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~  142 (209)
                      -.........++| +..+... ...++....+......+-||.++|.+++.+|--
T Consensus        93 geVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDP  147 (207)
T KOG0635|consen   93 GEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDP  147 (207)
T ss_pred             HHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCc
Confidence            1111111122333 3332211 223344454333445668999999999998843

>PHA03136 thymidine kinase; Provisional

Probab=98.86  E-value=3.9e-07  Score=71.16  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388          121 KIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus       121 ~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                      ...||.+|||+.+++++.+|+.+|  +|+.+
T Consensus       189 ~p~pD~IIyL~l~~e~~~~RI~kR--gR~~E  217 (378)
T PHA03136        189 EPHGGNIVIMDLDECEHAERIIAR--GRPGE  217 (378)
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHc--CCCcc
Confidence            356899999999999999999999  66554

>PLN02165 adenylate isopentenyltransferase

Probab=98.85  E-value=2.1e-08  Score=77.40  Aligned_cols=37  Identities=24%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      .++.+|+|.||+||||||++..|++.++..+++.|..
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            4566999999999999999999999999999998765

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.84  E-value=9.4e-09  Score=76.38  Aligned_cols=122  Identities=12%  Similarity=0.196  Sum_probs=66.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHH--HHHcCCchHHHHHHHHHcCCCCCHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTI   86 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
                      .....|++|.|.|+||+||||+|+.|+..+.       ...+.+|-+.-.  .+..     ..+....+..+.+....+.
T Consensus        77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~-----~glm~rKGfPeSyD~~~ll  151 (283)
T COG1072          77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDE-----RGLMARKGFPESYDVAALL  151 (283)
T ss_pred             CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhh-----ccccccCCCCccccHHHHH
Confidence            3456789999999999999999999988773       222333222110  0000     0000001111122222222


Q ss_pred             HHHHHH-------------------HHh-----cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388           87 KLLQKA-------------------MEE-----SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (209)
Q Consensus        87 ~~i~~~-------------------~~~-----~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~  142 (209)
                      +++...                   +..     .....+|++|........ .+.. ...-+|+.||++++.+.+.+|+.
T Consensus       152 ~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~-p~~~-~sdffDfSIyvDa~~~~le~wyi  229 (283)
T COG1072         152 RFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE-PWLF-LSDFFDFSIYVDADEELLEERYI  229 (283)
T ss_pred             HHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCC-cccc-ccccceEEEEecCCHHHHHHHHH
Confidence            222211                   110     114577888854333221 1111 33457899999999999999999


Q ss_pred             hc
Q 028388          143 NR  144 (209)
Q Consensus       143 ~r  144 (209)
                      .|
T Consensus       230 ~R  231 (283)
T COG1072         230 ER  231 (283)
T ss_pred             HH
Confidence            99

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=98.79  E-value=8.3e-09  Score=74.16  Aligned_cols=114  Identities=16%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      ++|+|+|.|+|||||.|..|.+.|.-     .+.-.+|-. -.+....-++....+...      ...+...+++.+.  
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~l------Rg~L~S~v~R~Ls--   72 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKAL------RGKLRSAVDRSLS--   72 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHH------HHHHHHHHHhhcc--
Confidence            57999999999999999999998841     222222211 010111111111111100      1122344444443  


Q ss_pred             CCCeEEEeCCCCCHHHH-HHHHHh-cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           97 GNDKFLIDGFPRNEENR-AAFEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~-~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+..||+|.-.+-.-.+ +.+... .......+||..+|.+.+.+-...|
T Consensus        73 k~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~  122 (281)
T KOG3062|consen   73 KGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER  122 (281)
T ss_pred             cCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence            48899999632111100 111111 2333456899999999999999888

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.79  E-value=2.7e-08  Score=70.10  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~   62 (209)
                      .|+|+|+||+|||||++.|+++ |++++  .+..+.++..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~   37 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE   37 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence            3899999999999999999998 98888  4666666544

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.69  E-value=1.2e-06  Score=62.67  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=60.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCC-------chHHHH--HHH---HHcC-------CCCCHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGS-------ENGTMI--QNM---IKEG-------KIVPSE   83 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~-------~~~~~~--~~~---~~~~-------~~~~~~   83 (209)
                      +|-|.|..|||++|+++.||++||+++++. +++.+......       .+.+..  ..+   +...       .....+
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            689999999999999999999999999998 66655433310       001111  111   1111       111222


Q ss_pred             HHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           84 VTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        84 ~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+.......+... ...++|+.|..     ...+.  ...+..+.|+|.+|.+...+|+.++
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~GR~-----a~~il--~~~~~~l~V~i~A~~~~Rv~ri~~~  134 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIVGRC-----ANYIL--RDIPNVLHVFIYAPLEFRVERIMER  134 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEESTT-----HHHHT--TT-TTEEEEEEEE-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEEecC-----Hhhhh--CCCCCeEEEEEECCHHHHHHHHHHH
Confidence            3333333333322 14567777753     12222  3444568999999999999999988

>PRK06761 hypothetical protein; Provisional

Probab=98.67  E-value=4e-06  Score=63.81  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      +++|+|+|+|||||||+++.|+++++...+
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~   32 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGI   32 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence            468999999999999999999999975433

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.63  E-value=1.5e-06  Score=59.98  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=51.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC-CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      |+=.+.+|+||||++..|+.-+| |.++..|++..+                      ......+.+.+.+.......|+
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k----------------------~~~~f~~~~l~~L~~~~~~vVi   59 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK----------------------RKPKFIKAVLELLAKDTHPVVI   59 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC----------------------CHHHHHHHHHHHHhhCCCCEEE
Confidence            55678999999999999999999 999988875321                      1111233344455444678899


Q ss_pred             EeCCCCCHHHHHHHHH
Q 028388          103 IDGFPRNEENRAAFEA  118 (209)
Q Consensus       103 ~dg~~~~~~~~~~~~~  118 (209)
                      .|...+...++..+..
T Consensus        60 aDRNNh~~reR~ql~~   75 (168)
T PF08303_consen   60 ADRNNHQKRERKQLFE   75 (168)
T ss_pred             EeCCCchHHHHHHHHH
Confidence            9988877776665443

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.63  E-value=4.9e-07  Score=77.22  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...+|++.|.||+||||+++.|++.+++..++
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~  245 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQ  245 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence            45689999999999999999999999765544

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.63  E-value=4.9e-06  Score=61.38  Aligned_cols=148  Identities=17%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--   96 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   96 (209)
                      ..|.+|++.|..||||+.+.+.|.+.++-..+....+-..       .              +.+.....+.+.....  
T Consensus        29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~p-------t--------------~eE~~~p~lwRfw~~lP~   87 (230)
T TIGR03707        29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKP-------S--------------DRERTQWYFQRYVQHLPA   87 (230)
T ss_pred             CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCC-------C--------------HHHHcChHHHHHHHhCCC
Confidence            4689999999999999999999999997444433111000       0              0001111222222222  


Q ss_pred             CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--c
Q 028388           97 GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--N  152 (209)
Q Consensus        97 ~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--~  152 (209)
                      .|+..|+|+..+.                   ...+..|++.  .....-+-+||+++.++..+|+..| ......+  .
T Consensus        88 ~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~Wk~~  167 (230)
T TIGR03707        88 AGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQWKLS  167 (230)
T ss_pred             CCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCC
Confidence            2777777764433                   2333344442  3444556899999999999999999 3332222  2


Q ss_pred             HHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCC
Q 028388          153 VETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK  187 (209)
Q Consensus       153 ~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (209)
                      +.++..  +...|......++.... ..+++++|+++.
T Consensus       168 ~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d  205 (230)
T TIGR03707       168 PMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD  205 (230)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            233322  34445554444444333 235899999963

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.59  E-value=2.4e-07  Score=63.25  Aligned_cols=24  Identities=29%  Similarity=0.569  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +|+|+||+||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=2.9e-07  Score=75.36  Aligned_cols=120  Identities=18%  Similarity=0.295  Sum_probs=69.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh--HHHHHHHHcCCchHHHHHHHHHc--------------------C
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG--DLLRAEIKSGSENGTMIQNMIKE--------------------G   77 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------~   77 (209)
                      -|.=|++.||||+|||.||+.+|.+++.++++..  .++..+ .+  +--+.+++.+..                    .
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SG--ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR  298 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SG--ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR  298 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-Cc--ccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence            3556899999999999999999999999887741  111111 11  111122222211                    0


Q ss_pred             CCCCHHHHHHHHHHHHHhcC--------CCeEEEeCCCCCHHHHH-HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           78 KIVPSEVTIKLLQKAMEESG--------NDKFLIDGFPRNEENRA-AFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        78 ~~~~~~~~~~~i~~~~~~~~--------~~~~i~dg~~~~~~~~~-~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      +....+.-..++.+.+...+        +.+|++-|......-.+ .+.  ....+|.-|.|.+|.+...+++..-
T Consensus       299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR--RaGRFdrEI~l~vP~e~aR~~IL~~  372 (802)
T KOG0733|consen  299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR--RAGRFDREICLGVPSETAREEILRI  372 (802)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh--ccccccceeeecCCchHHHHHHHHH
Confidence            11112222344444443221        46666665333333222 333  4667899999999999999988875

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=98.56  E-value=9.9e-06  Score=60.93  Aligned_cols=146  Identities=11%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--G   97 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~   97 (209)
                      .|.+|++.|..||||..+.+.|.+.++-..+....+-.       ...              .+.....+.+.....  .
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~-------Pt~--------------eE~~~p~lWRfw~~lP~~  113 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA-------PSA--------------EELDHDFLWRIHKALPER  113 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC-------CCH--------------HHHcCchHHHHHHhCCCC
Confidence            58999999999999999999999999744443311100       000              000011122222222  3


Q ss_pred             CCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--cH
Q 028388           98 NDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--NV  153 (209)
Q Consensus        98 ~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--~~  153 (209)
                      |+..|+|+..+.                   ...+..|++.  .....-+-+||+++.++..+|+..| ......+  .+
T Consensus       114 G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~  193 (264)
T TIGR03709       114 GEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSP  193 (264)
T ss_pred             CeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCH
Confidence            778888875433                   2233333332  3344556899999999999999998 3333322  22


Q ss_pred             HHHH--HHHHHHHhhchhHHHHHh-hcCcEEEEcCC
Q 028388          154 ETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAA  186 (209)
Q Consensus       154 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~  186 (209)
                      .++.  +++..|......++.... ..+++++|+++
T Consensus       194 ~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~  229 (264)
T TIGR03709       194 ADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPAD  229 (264)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCC
Confidence            3332  234445554444444333 24589999996

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>PHA03135 thymidine kinase; Provisional

Probab=98.54  E-value=1.1e-05  Score=62.26  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+-.+|.|.|+.|+||||+++.|++..
T Consensus         8 ~~~~rIYlDG~~GvGKTT~~~~l~~~~   34 (343)
T PHA03135          8 AQLIRVYLDGPFGIGKTSMLNEMPDHS   34 (343)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence            445679999999999999999999863

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.54  E-value=7.2e-06  Score=66.91  Aligned_cols=149  Identities=11%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-   96 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-   96 (209)
                      ...|.+|++.|..||||++..+.|.+.++-..+..-.+...       .              +.+.....+.+..... 
T Consensus        37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P-------~--------------~eE~~~~flwRfw~~lP   95 (493)
T TIGR03708        37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP-------S--------------DEERERPPMWRFWRRLP   95 (493)
T ss_pred             cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC-------C--------------HHHhcCcHHHHHHHhCC
Confidence            35688999999999999999999999996433322110000       0              0011111222222222 


Q ss_pred             -CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--
Q 028388           97 -GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--  151 (209)
Q Consensus        97 -~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--  151 (209)
                       .|...|+|+..+.                   ..++..|++.  .....-+-+||+++.++..+|+..| ..+...+  
T Consensus        96 ~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~WK~  175 (493)
T TIGR03708        96 PKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETRWRV  175 (493)
T ss_pred             CCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccccCC
Confidence             2778888865443                   2233333332  3444556899999999999999999 3333322  


Q ss_pred             cHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCC
Q 028388          152 NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAK  187 (209)
Q Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~  187 (209)
                      .+.++..  +...|......++.... ..+++++|+++.
T Consensus       176 s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add  214 (493)
T TIGR03708       176 TPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED  214 (493)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence            3333333  34455555544444433 234899999963

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PHA03134 thymidine kinase; Provisional

Probab=98.54  E-value=1.6e-05  Score=61.43  Aligned_cols=41  Identities=12%  Similarity=0.193  Sum_probs=29.2

Q ss_pred             cEEEEEecCHHHHHHHHhhccCCCCCCcHH-HHHHHHHHHHhhc
Q 028388          125 EFVLFFDCSEEEMERRILNRNQGREDDNVE-TIRKRFKVFLESS  167 (209)
Q Consensus       125 ~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~-~~~~~~~~~~~~~  167 (209)
                      +.+|+++.++++..+|+.+|  +|+.+..+ .+...+...+...
T Consensus       165 ~niVl~~l~~~e~~~Rl~~R--~R~gE~id~~yL~~l~n~Y~~l  206 (340)
T PHA03134        165 GNLVVTTLNPDEHLRRLRAR--ARIGEQIDAKLIAALRNVYAML  206 (340)
T ss_pred             CeEEEEeCCHHHHHHHHHHc--CCCccccCHHHHHHHHHHHHHH
Confidence            78999999999999999999  77666433 3444444443433

>PHA03138 thymidine kinase; Provisional

Probab=98.51  E-value=2.1e-06  Score=66.20  Aligned_cols=26  Identities=23%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +-..|.|.|+.|+||||+++.+.+.+
T Consensus        11 ~~~riYleG~~GvGKTT~~~~~l~~~   36 (340)
T PHA03138         11 CILRIYLDGAFGIGKTTAAEAFLHGF   36 (340)
T ss_pred             cEEEEEEECCCCcCHHhHHHHHHHhh
Confidence            34579999999999999998776654

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.50  E-value=1.2e-07  Score=73.17  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      ++++|+|+||+||||||+|..|++.++..+|+.|.
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds   37 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS   37 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence            46799999999999999999999999999998876

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=98.50  E-value=2.2e-06  Score=60.67  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHH-----
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQK-----   91 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----   91 (209)
                      ++.+.|.|++||||+++.|.-...      ..+++.||+.-...+.........+.    ......+-.+..++.     
T Consensus         3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRg----r~~~~iEk~ISaiqedtdwp   78 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRG----RFECHIEKCISAIQEDTDWP   78 (291)
T ss_pred             eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhc----hHHHHHHHHHHHHhcccCCC
Confidence            578999999999999999865432      45566667653322211111110000    000001111222220     


Q ss_pred             ----HHH-----hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           92 ----AME-----ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        92 ----~~~-----~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                          .+.     +...+.+++|..++....+..|+++  ......-+||+...-+++.++...|
T Consensus        79 pqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~R  142 (291)
T KOG4622|consen   79 PQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHR  142 (291)
T ss_pred             chheeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccc
Confidence                010     1114677888755554444445444  2222334999999999999999988

>PLN02840 tRNA dimethylallyltransferase

Probab=98.49  E-value=1.6e-07  Score=74.73  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=33.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      -...++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus        16 ~~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         16 SKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             ccccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            345567799999999999999999999999988887654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.48  E-value=1.2e-07  Score=64.12  Aligned_cols=28  Identities=25%  Similarity=0.643  Sum_probs=25.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      |+|.||||+||||+++.+++.++.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~   28 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIE   28 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccc
Confidence            6899999999999999999999976644

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF13173 AAA_14: AAA domain

Probab=98.46  E-value=2e-06  Score=58.04  Aligned_cols=98  Identities=13%  Similarity=0.252  Sum_probs=60.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      ++++|.|+.|+||||+++.+++.+.    ..+++.++.-......                  .+  ..+.+.+... ..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~-~~   61 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIK-PG   61 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhc-cC
Confidence            5789999999999999999998875    7777775543322100                  00  1122222211 13


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHH
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERR  140 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R  140 (209)
                      ...+++|..-....+...+..+....++.-|++..+......+
T Consensus        62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~  104 (128)
T PF13173_consen   62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK  104 (128)
T ss_pred             CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence            5778899765555555555554233366788888887666544

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=98.44  E-value=1.9e-06  Score=63.63  Aligned_cols=143  Identities=15%  Similarity=0.185  Sum_probs=77.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      .|.+|+|.|..||||+.+.+.|.+.++   +.+.+.+.-..+.              ..          ...+.+.....
T Consensus        30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE--------------~~----------~p~lwRfw~~l   85 (228)
T PF03976_consen   30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEE--------------LR----------RPFLWRFWRAL   85 (228)
T ss_dssp             HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHH--------------HT----------S-TTHHHHTTS
T ss_pred             CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhH--------------cC----------CCcHHHHHHhC
Confidence            568999999999999999999999886   3333332111111              00          11122222222


Q ss_pred             --CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC-
Q 028388           97 --GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD-  151 (209)
Q Consensus        97 --~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~-  151 (209)
                        .|+..|+|+..+.                   ...+..|++.  .....-+-|||+.+.++..+|+.+| ..+...+ 
T Consensus        86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~wk  165 (228)
T PF03976_consen   86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRWK  165 (228)
T ss_dssp             --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGGG
T ss_pred             CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCcccccc
Confidence              3888888875433                   1223333332  3444556899999999999999999 3333222 


Q ss_pred             -cHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCC
Q 028388          152 -NVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAA  186 (209)
Q Consensus       152 -~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~  186 (209)
                       .+.++..  .+..|......++.... ...++++|+++
T Consensus       166 v~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~  204 (228)
T PF03976_consen  166 VSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPAD  204 (228)
T ss_dssp             --HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-S
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCC
Confidence             2333333  33444444444444333 34589999997

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.42  E-value=7.3e-06  Score=65.45  Aligned_cols=107  Identities=23%  Similarity=0.391  Sum_probs=57.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPSEVTIKLLQK   91 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~   91 (209)
                      ++.+++++|++||||||++..|+..+    |  ..+++. |.++....      ..+..+.....  ....... ..+..
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~~-~~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKDI-KKFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHHH-HHHHH
Confidence            56789999999999999999999765    2  233444 54444311      12222212111  1111112 23333


Q ss_pred             HHHhcCCCeEEEe--CCC-CCHHHHHHHHHhc----C-CCCcEEEEEecCH
Q 028388           92 AMEESGNDKFLID--GFP-RNEENRAAFEAVT----K-IEPEFVLFFDCSE  134 (209)
Q Consensus        92 ~~~~~~~~~~i~d--g~~-~~~~~~~~~~~~~----~-~~~~~~i~L~~~~  134 (209)
                      .+.......+++|  |++ +...+...+..+.    . .....++.|.+..
T Consensus       294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~  344 (432)
T PRK12724        294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS  344 (432)
T ss_pred             HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence            4443346789999  553 4556666665541    1 1224455666543

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.42  E-value=2.7e-06  Score=68.15  Aligned_cols=35  Identities=29%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +.-....|+|+|++|||||||++.|++.+|...+.
T Consensus       215 r~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        215 RPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             hhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            34456789999999999999999999999977654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.38  E-value=3.6e-07  Score=62.66  Aligned_cols=26  Identities=35%  Similarity=0.606  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++.|+|+|+|||||||+++.+++.+.
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            57799999999999999999999883

>PF05729 NACHT: NACHT domain

Probab=98.34  E-value=3.1e-06  Score=59.41  Aligned_cols=24  Identities=33%  Similarity=0.686  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++++|.|.||+||||+++.++..+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHH
Confidence            368999999999999999999887

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.34  E-value=3.7e-05  Score=52.68  Aligned_cols=170  Identities=14%  Similarity=0.126  Sum_probs=94.1

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHc-C--CchHHHHHH----HHHcCC-CCCHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKS-G--SENGTMIQN----MIKEGK-IVPSEVTI   86 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~-~--~~~~~~~~~----~~~~~~-~~~~~~~~   86 (209)
                      .+++.++|++.|.|-||||++|..+.+...  |.++-.|-+. +.++. .  ...+.....    ...... ..+-.+..
T Consensus        19 g~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~-e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e   97 (205)
T COG3896          19 GMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFW-EALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILE   97 (205)
T ss_pred             CCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHH-HhCCHHhhccccccccccccccCCceeeEeechhHHH
Confidence            356788999999999999999999988875  5555564443 33332 1  111100000    000000 11112221


Q ss_pred             HHHH---HHHH--hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388           87 KLLQ---KAME--ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (209)
Q Consensus        87 ~~i~---~~~~--~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (209)
                      ..+.   ..+.  ...+..++.|.+.-...+.....+.....+...+=+.||.|+..+|-..|  +.........     
T Consensus        98 ~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr--~dR~pG~~rg-----  170 (205)
T COG3896          98 LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRR--GDRHPGWNRG-----  170 (205)
T ss_pred             HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhc--CCcCcchhhh-----
Confidence            1111   1111  12378899998877767666655533334456888999999999998877  2211111111     


Q ss_pred             HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388          162 VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~  201 (209)
                      .+++..       .....-+.+|+ ..++.|....|.+-++
T Consensus       171 ~~r~vH-------a~~~YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         171 SARAVH-------ADAEYDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             hHHHhc-------CCcceeeeecccCCCHHHHHHHHHHHhc
Confidence            122211       11112256676 4488999988887654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.29  E-value=3.3e-06  Score=57.03  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh--------CCcee--cHhHHHHHHHHcCCchHHHHHHHHHcCCC--CCHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKI--VPSEVTIK   87 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l--------~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   87 (209)
                      +..+++|.|+||+|||++++.+++.+        +..++  +.....     ....+...+...+.....  .+...+.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence            35679999999999999999999987        43333  221111     001122233333322222  23455557


Q ss_pred             HHHHHHHhcCCCeEEEeCCCC--CHHHHHHHHHhcCCCCcEEEEEecCH
Q 028388           88 LLQKAMEESGNDKFLIDGFPR--NEENRAAFEAVTKIEPEFVLFFDCSE  134 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~dg~~~--~~~~~~~~~~~~~~~~~~~i~L~~~~  134 (209)
                      .+.+.+.......+|+|..-.  .......+..+. ..+.+.+.|-..+
T Consensus        78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~~~~~~vvl~G~~  125 (131)
T PF13401_consen   78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-NESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-CSCBEEEEEEESS
T ss_pred             HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-hCCCCeEEEEECh
Confidence            777777765445788997532  233333444422 2555555554443

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.6e-05  Score=65.84  Aligned_cols=129  Identities=18%  Similarity=0.264  Sum_probs=72.1

Q ss_pred             cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHHHcCCc-hHHHHHH----------------H
Q 028388           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSE-NGTMIQN----------------M   73 (209)
Q Consensus        13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~~~~~~-~~~~~~~----------------~   73 (209)
                      +..+-.+.|+-|++.||||+||||+|+.||..-+..+++  .-+++.+++-.... ..+.++.                .
T Consensus       460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi  539 (693)
T KOG0730|consen  460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDAL  539 (693)
T ss_pred             HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhH
Confidence            455556678889999999999999999999988766655  34555544322111 1111111                1


Q ss_pred             HHc-CCCCCHHHHHHHHHHHHHhcC-----CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           74 IKE-GKIVPSEVTIKLLQKAMEESG-----NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        74 ~~~-~~~~~~~~~~~~i~~~~~~~~-----~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      -.. +.... ......+...+.+.+     ...+|+...++...-...+.  .....|.+||+..|.......+.+-
T Consensus       540 ~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl--RPGRlD~iiyVplPD~~aR~~Ilk~  613 (693)
T KOG0730|consen  540 AGSRGGSSS-GVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL--RPGRLDRIIYVPLPDLEARLEILKQ  613 (693)
T ss_pred             hhccCCCcc-chHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc--CCcccceeEeecCccHHHHHHHHHH
Confidence            110 01111 111223333333322     35666665543322222222  3556899999999998877777665

>CHL00181 cbbX CbbX; Provisional

Probab=98.26  E-value=3e-05  Score=59.63  Aligned_cols=40  Identities=20%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---------CceecHhHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---------YTHLSAGDLLRAE   59 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---------~~~i~~~~~~~~~   59 (209)
                      .+..+++.|+||+||||+|+.+++.+.         +..++.+++...+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~  106 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY  106 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence            345689999999999999999998762         3445555555443

>PLN02748 tRNA dimethylallyltransferase

Probab=98.26  E-value=9.6e-07  Score=71.59  Aligned_cols=36  Identities=33%  Similarity=0.545  Sum_probs=33.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      .++.+|+|.||+|||||||+..|+++++..+|+.|.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            467799999999999999999999999999999864

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.25  E-value=1.2e-05  Score=61.04  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.+..+++.||||+||||+|+.+++.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999999876

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=98.24  E-value=1.7e-06  Score=59.74  Aligned_cols=76  Identities=26%  Similarity=0.386  Sum_probs=44.7

Q ss_pred             cCCC-CcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHH-HHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHH
Q 028388          120 TKIE-PEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFD  194 (209)
Q Consensus       120 ~~~~-~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~  194 (209)
                      .... |+++|||++|++++.+|+++|  ||+.+  -.....+++. ..++.+-   ..+. ...++++|++. +..+..+
T Consensus        63 ~~~~~pdl~IYL~~~~e~~~~RI~kR--gR~~E~~i~~~Yl~~L~~~~y~~~~---~~~~-~~~vl~id~~~~d~~~~~~  136 (146)
T PF01712_consen   63 EIPKSPDLIIYLDASPETCLERIKKR--GREEEKNIPLEYLERLHEEAYEDWL---KKYD-STPVLVIDADNLDFVENPE  136 (146)
T ss_dssp             HCCHH-SEEEEEE--HHHHHHHHHHC--TTGGGTTS-HHHHHHHHHHHHCCHH---SCCT-TTTGCEEEECEEECCSHHT
T ss_pred             HhhccCCeEEEEeCCHHHHHHHHHHh--CCchhcCCCHHHHHHHhHHHHHHHH---HhCC-CCceEEEECCccCcccCHH
Confidence            5566 999999999999999999999  77655  2345555555 3333221   1111 23567777754 5555555


Q ss_pred             HHHHhcC
Q 028388          195 AVKAVFT  201 (209)
Q Consensus       195 ~i~~~i~  201 (209)
                      .+...+.
T Consensus       137 ~~~~~~~  143 (146)
T PF01712_consen  137 DIEQVIN  143 (146)
T ss_dssp             THHHHHC
T ss_pred             HHHHHHH
Confidence            5555444

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.24  E-value=1.7e-06  Score=63.11  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS   62 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~   62 (209)
                      ++|+|+|.|||||||+++.+.+..+..-++.++.+++.+..
T Consensus         1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l~~   41 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEILAI   41 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHHHH
Confidence            58999999999999999999665444338888888877543

>PRK09087 hypothetical protein; Validated

Probab=98.24  E-value=5.2e-06  Score=61.58  Aligned_cols=39  Identities=21%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~   59 (209)
                      .+.++|.|++|||||+|++.+++..+..+++.+++..+.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~   82 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDA   82 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHH
Confidence            345899999999999999999999999999987655544

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.22  E-value=9.8e-07  Score=67.31  Aligned_cols=32  Identities=19%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      +|+|.||+|||||+++..|++.++..+|+.|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            48999999999999999999999998888765

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.22  E-value=9.2e-06  Score=63.51  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+++|+|||||||++..|+..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            458899999999999999888888766

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.22  E-value=8.5e-06  Score=65.48  Aligned_cols=39  Identities=33%  Similarity=0.619  Sum_probs=30.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC--ceecHhHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAGDLLR   57 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~--~~i~~~~~~~   57 (209)
                      ..+|.+|+++|++||||||.+..||..+   |.  .+++. |.++
T Consensus        97 ~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~-D~~R  140 (429)
T TIGR01425        97 KGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA-DTFR  140 (429)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC-cccc
Confidence            3458899999999999999999999877   43  44555 4444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.22  E-value=1.2e-06  Score=59.54  Aligned_cols=28  Identities=32%  Similarity=0.615  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++|.|||||||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4679999999999999999999988654

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.22  E-value=1.1e-05  Score=65.22  Aligned_cols=27  Identities=37%  Similarity=0.628  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+++|++||||||++..|+..+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            468899999999999999999999877

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.22  E-value=1.6e-06  Score=63.20  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=24.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ..-+++.||||.||||||+.+|++++..+.
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            456899999999999999999999986553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.21  E-value=1.4e-06  Score=68.02  Aligned_cols=28  Identities=18%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.++++|.|||||||||+|+.|++.++
T Consensus        76 ~~r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       76 ERKQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3467899999999999999999999885

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.20  E-value=2.6e-06  Score=61.77  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      |++|++.||+|+||||.+-+||.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            78999999999999999999998873

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.20  E-value=1.3e-05  Score=65.90  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..|+-|++.||||+|||++|+.++..++.+++..
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4567899999999999999999999999777553

>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type

Probab=98.19  E-value=0.00013  Score=51.17  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=67.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcC-----------CchHHH-HH---HHHHcCCCCCHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSG-----------SENGTM-IQ---NMIKEGKIVPSEV   84 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~-----------~~~~~~-~~---~~~~~~~~~~~~~   84 (209)
                      +|+|+|..+|||.|++..|.++++.   .+++..+-+...+...           ..+.+. ..   ++...........
T Consensus         1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~   80 (182)
T TIGR01223         1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGF   80 (182)
T ss_pred             CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccH
Confidence            5899999999999999999999974   2455544444433321           112111 11   1111000001111


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           85 TIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        85 ~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ...++..   ......+|+.+- +.......|.+ ....-.+.|-+++++++..+|.-..
T Consensus        81 F~r~~~~---~~~~~v~iIsD~-Rr~~dv~~f~~-~~g~~~~~VRV~AseetR~~Rgw~F  135 (182)
T TIGR01223        81 FCRKIVE---GISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVF  135 (182)
T ss_pred             HHHHHHh---ccCCCEEEEeCC-CcccHHHHHHH-HcCCceEEEEEecCHHHHHHHHHhc
Confidence            1222222   222346666654 67777788887 4434456899999999999997554

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.4e-06  Score=66.31  Aligned_cols=27  Identities=22%  Similarity=0.617  Sum_probs=24.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..++|++.||||.|||+||+.|||+|.
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence            456899999999999999999999994

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.18  E-value=1.4e-06  Score=61.73  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~   52 (209)
                      ++++|.|+|||||||+|..|+..++  ..++..
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat   34 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIAT   34 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcC
Confidence            4799999999999999999999987  445554

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.17  E-value=1.8e-06  Score=68.70  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      .|..|++.||||+||||+|+.|++.++.+++..+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4678999999999999999999999998887765

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.17  E-value=1.1e-05  Score=63.23  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=30.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      +...+....++-||||+||||+|+.|++..+..+...
T Consensus        43 v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~   79 (436)
T COG2256          43 VEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL   79 (436)
T ss_pred             HhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence            3445566788999999999999999999998766443

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=98.17  E-value=0.00021  Score=58.58  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=87.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-   96 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-   96 (209)
                      ...|.+|++.|..+|||....+.|.+.++-..+..-.+-.       +..              .+.....+.+..... 
T Consensus       296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~-------Pt~--------------~E~~~~~lwRf~~~lP  354 (493)
T TIGR03708       296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAA-------PTD--------------EEKAQHYLWRFWRHIP  354 (493)
T ss_pred             CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCC-------cCH--------------HHHcCcHHHHHHHhCC
Confidence            3568899999999999999999999999743333211000       000              000111122222222 


Q ss_pred             -CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC--
Q 028388           97 -GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGREDD--  151 (209)
Q Consensus        97 -~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~--  151 (209)
                       .|+..|+|+..+.                   ..++..|++.  .....-+-+||+++.++..+|+..| ..+...+  
T Consensus       355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~WK~  434 (493)
T TIGR03708       355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKRYKI  434 (493)
T ss_pred             CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccCCcC
Confidence             3788888864433                   1223333332  3444556899999999999999999 3333322  


Q ss_pred             cHHHHHH--HHHHHHhhchhHHHHHhh-cCcEEEEcCC
Q 028388          152 NVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAA  186 (209)
Q Consensus       152 ~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~  186 (209)
                      .++++..  +...|......++..... .+++++|+++
T Consensus       435 t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~  472 (493)
T TIGR03708       435 TDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAN  472 (493)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCC
Confidence            4444433  344555555555554443 3589999986

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PLN02796 D-glycerate 3-kinase

Probab=98.16  E-value=1.7e-06  Score=67.31  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=31.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~   56 (209)
                      .+|.+|.|.|++||||||+++.|...+.     ...++.|+++
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4688999999999999999999998885     3456666665

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=2.5e-06  Score=65.26  Aligned_cols=35  Identities=23%  Similarity=0.421  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      ++.+|+|+||+|||||-+|-.||+++|.++||.|.
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DS   36 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDS   36 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecch
Confidence            46899999999999999999999999999999865

>TIGR00959 ffh signal recognition particle protein

Probab=98.16  E-value=3.9e-05  Score=61.97  Aligned_cols=39  Identities=38%  Similarity=0.657  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLR   57 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~   57 (209)
                      ..+|.+++++|++||||||++..||..+    |  ..+++. |.+|
T Consensus        96 ~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~-D~~R  140 (428)
T TIGR00959        96 KKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC-DLYR  140 (428)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-cccc
Confidence            3468899999999999999999988764    2  345666 4344

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.15  E-value=2.6e-06  Score=58.28  Aligned_cols=28  Identities=29%  Similarity=0.579  Sum_probs=25.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      |+|.|+||+|||++++.|++.++.+++.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            7899999999999999999999866643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=98.14  E-value=0.00033  Score=48.27  Aligned_cols=28  Identities=36%  Similarity=0.513  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      .+.+.|.|+--||||||++.|+..+|..
T Consensus         8 ~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           8 VKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             heeeeeecCcccChHHHHHHHHHHhCCC
Confidence            3579999999999999999999999863

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.12  E-value=2.5e-06  Score=67.92  Aligned_cols=34  Identities=15%  Similarity=0.325  Sum_probs=30.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      .|..|++.||||+||||+|+.|++.++.+++..+
T Consensus        49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD   82 (443)
T PRK05201         49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (443)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence            3678999999999999999999999998777764

>PRK10867 signal recognition particle protein; Provisional

Probab=98.12  E-value=1.8e-05  Score=63.97  Aligned_cols=40  Identities=30%  Similarity=0.520  Sum_probs=29.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRA   58 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~   58 (209)
                      ...|.+|+++|++||||||++..||..+    |  ..+++. |.++.
T Consensus        97 ~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~-D~~R~  142 (433)
T PRK10867         97 AKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA-DVYRP  142 (433)
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc-cccch
Confidence            3458899999999999999888888755    3  345666 43443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=5.7e-05  Score=59.95  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+|.|++||||||++..|+..+
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999999999776

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.10  E-value=2.7e-06  Score=67.62  Aligned_cols=39  Identities=26%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~   56 (209)
                      ..+|.+|.|.|++||||||+++.|...+.     ...|+.|+++
T Consensus       209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            34789999999999999999999987763     4557777776

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.10  E-value=4.2e-06  Score=64.23  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      ..+++|+|+||+|||||.||-.||++ +..+||.|.
T Consensus         2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS   36 (300)
T PRK14729          2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS   36 (300)
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence            34569999999999999999999999 568888754

>PRK09169 hypothetical protein; Validated

Probab=98.09  E-value=4e-05  Score=71.18  Aligned_cols=111  Identities=11%  Similarity=0.034  Sum_probs=77.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      .....|+++|.+|+||||+.+.|+..+++.+++.|..+.+.      .+..+...+.... ++.+.....+.+.+.   .
T Consensus      2108 L~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr---~ 2177 (2316)
T PRK09169       2108 LGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR---W 2177 (2316)
T ss_pred             HhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc---C
Confidence            34567999999999999999999999999999998877765      2333333332223 566666777777664   2


Q ss_pred             CeEE-EeCCC-CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           99 DKFL-IDGFP-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        99 ~~~i-~dg~~-~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ..|| .+|+. ........+..     -.++|||..+.+++.+|+...
T Consensus      2178 ~vVLSTGGGav~~~enr~~L~~-----~GlvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169       2178 EVVLPAEGFGAAVEQARQALGA-----KGLRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred             CeEEeCCCCcccCHHHHHHHHH-----CCEEEEEECCHHHHHHHhccC
Confidence            2233 33443 33444445554     347999999999999999865

>PRK06620 hypothetical protein; Validated

Probab=98.09  E-value=7.2e-05  Score=55.06  Aligned_cols=31  Identities=13%  Similarity=0.021  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..++|.||||||||+|++.+++..+..+++.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~   75 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD   75 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcch
Confidence            5689999999999999999999888766553

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.09  E-value=4e-05  Score=54.45  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=25.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      +++++|+|||||||++..++..+   +  ..+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            68999999999999999999876   3  3456654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=3.1e-05  Score=60.49  Aligned_cols=115  Identities=24%  Similarity=0.407  Sum_probs=67.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC---C-ceecHhHHHHHHHHcCCchHHHHHHHHHc-------C-CCCCHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKE-------G-KIVPSE   83 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~   83 (209)
                      +...+|.+|++.|.-||||||.|-.||-+|.   + +.+-..|.+|....+     +.-+...+.       + ..-|..
T Consensus        96 ~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD-----QLkqnA~k~~iP~ygsyte~dpv~  170 (483)
T KOG0780|consen   96 PKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD-----QLKQNATKARVPFYGSYTEADPVK  170 (483)
T ss_pred             cccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH-----HHHHHhHhhCCeeEecccccchHH
Confidence            4457899999999999999999999998883   3 223334555543211     111111111       1 111222


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcEE-EEEecCHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEFV-LFFDCSEEE  136 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~----~~~~~~~~-i~L~~~~~~  136 (209)
                      +..+-+.+. .+..-..+|+|...+...+...|.++    ....|+.+ ++++++--.
T Consensus       171 ia~egv~~f-Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ  227 (483)
T KOG0780|consen  171 IASEGVDRF-KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ  227 (483)
T ss_pred             HHHHHHHHH-HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence            222233322 22235788999888888887778776    56678774 455665544

>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.07  E-value=0.0002  Score=52.27  Aligned_cols=162  Identities=17%  Similarity=0.236  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-------------hHHHHHHHHH-cCCCCCHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-------------NGTMIQNMIK-EGKIVPSE   83 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-------------~~~~~~~~~~-~~~~~~~~   83 (209)
                      .-|+|+||.|+||+|+.+.|.++++. ..++.....+.....   +..             ....+.+++. .+..+...
T Consensus        38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts  117 (231)
T KOG0707|consen   38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS  117 (231)
T ss_pred             ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence            57999999999999999999999973 222221211111000   000             0011112211 11111111


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcE-EEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFD-CSEEEMERRILNRNQGREDDNVETIRKRFK  161 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~-~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (209)
                        ...++....  .++.+++|=.......   .   ....++. .+|+. .+...+.+|+..|    ..+..+.+.+++.
T Consensus       118 --i~av~~~~~--~gk~~ildId~qg~~~---i---~~~~~~~i~i~~~pps~~~~e~rl~~r----gte~~~~l~~r~~  183 (231)
T KOG0707|consen  118 --IAAVQRLML--SGKVCILDIDLQGVQP---I---RATSLDAIYIFIKPPSIKILEERLRAR----GTETEESLLKRLK  183 (231)
T ss_pred             --HHHHHHHHh--cCCcceeehhhcCcee---e---ecCCCceEEEEecCCcchhHHHHhhcc----CcchHHHHHHHHH
Confidence              122332222  3677777722111111   0   1123333 45554 5567788888866    3456677877776


Q ss_pred             HHHhhchhHHHHHhhcC--cEEEEcCCCChHHHHHHHHHhcCc
Q 028388          162 VFLESSLPVVQYYEAKG--KVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~~--~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .-+......    +..+  .+.++|+ .++++....+...+..
T Consensus       184 sa~~e~~~~----~~~g~~d~~~~ns-~~lee~~kel~~~~~~  221 (231)
T KOG0707|consen  184 SAEEEFEIL----ENSGSFDLVIVNS-DRLEEAYKELEIFISS  221 (231)
T ss_pred             hhhhhhccc----cCCccccceecCC-CchhhhhhhhhhhhhH
Confidence            333322222    2222  3444444 6888888888776644

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.07  E-value=5.4e-06  Score=55.90  Aligned_cols=29  Identities=31%  Similarity=0.470  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      .+.+|++.|+.|+||||+++.+++.++..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999853

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=3.4e-05  Score=61.56  Aligned_cols=27  Identities=30%  Similarity=0.473  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|++.|++|+||||.+..||..+
T Consensus       172 ~~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        172 LKKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.04  E-value=6.2e-06  Score=58.22  Aligned_cols=28  Identities=14%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..+.++.|+|++|||||||++.|...+.
T Consensus         4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          4 TMIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence            3567999999999999999999998774

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.04  E-value=5.4e-06  Score=58.56  Aligned_cols=22  Identities=36%  Similarity=0.770  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 028388           24 VFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      |+|+|+||+||||+++.+.+.+
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            8999999999999999999988

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=98.03  E-value=2.2e-05  Score=58.35  Aligned_cols=38  Identities=29%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH------hCCceecHhHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH------FGYTHLSAGDLL   56 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~------l~~~~i~~~~~~   56 (209)
                      +++.+++|.|+||||||+++..++-.      .+..+++.+.-.
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~   60 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP   60 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence            45779999999999999999875532      235667654433

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.03  E-value=0.00024  Score=59.93  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +..++|+|++|+||||+++.|++.+++
T Consensus        38 pHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         38 HHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            557899999999999999999999987

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.03  E-value=4.5e-06  Score=60.23  Aligned_cols=27  Identities=37%  Similarity=0.546  Sum_probs=23.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      +...++-+++|+||+||||||+.+.|-
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            445677899999999999999999984

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.02  E-value=8.4e-05  Score=60.57  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++||||+||||+|+.|++.++..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4568999999999999999999999864

>PRK12377 putative replication protein; Provisional

Probab=98.02  E-value=0.00032  Score=52.73  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      ...++|.|+||+|||+|+..++..+   |  ..+++..+++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l  144 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL  144 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence            4579999999999999999999987   2  3566676666554

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=98.02  E-value=4.4e-05  Score=55.69  Aligned_cols=124  Identities=14%  Similarity=0.114  Sum_probs=68.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc-------------eecHh--HHHHHHHHcCCchHHHHHHHHHcCCCCCH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-------------HLSAG--DLLRAEIKSGSENGTMIQNMIKEGKIVPS   82 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~-------------~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
                      .+.-.++.+.|+||+||||++..+.+.++..             ++..|  ++.++.+... ..-+..+...+..+.+..
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f-~dP~~AharRGapwTFD~  194 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLF-KDPQTAHARRGAPWTFDS  194 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhh-cChHHHHhhcCCCcccCH
Confidence            3445689999999999999999999876422             12222  2223322110 111222222333445555


Q ss_pred             HHHHHHHHHHHH-------------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388           83 EVTIKLLQKAME-------------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (209)
Q Consensus        83 ~~~~~~i~~~~~-------------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~  137 (209)
                      .+..+++.-.-.                         ....+.+|++|.....++ .-|.. .....+...|++++.+.+
T Consensus       195 ~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~-~~Wkd-i~k~~d~k~~idV~~~~a  272 (323)
T KOG2702|consen  195 NLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQ-ENWKD-IYKTLDDKYKIDVDYEAA  272 (323)
T ss_pred             HHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecC-ccHHH-HHHHhhhheeccccHHHH
Confidence            554444332210                         011467778875433221 11222 111245568999999999


Q ss_pred             HHHHhhc
Q 028388          138 ERRILNR  144 (209)
Q Consensus       138 ~~R~~~r  144 (209)
                      .+|..+|
T Consensus       273 ~~RVa~R  279 (323)
T KOG2702|consen  273 EERVAKR  279 (323)
T ss_pred             HHHHHHH
Confidence            9999999

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.01  E-value=5.9e-06  Score=60.67  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=27.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      ..|..++|.|+||+||||+|+.|+  -...+++.|..
T Consensus        10 ~~~~~~liyG~~G~GKtt~a~~~~--~~~~~~~~d~~   44 (220)
T TIGR01618        10 RIPNMYLIYGKPGTGKTSTIKYLP--GKTLVLSFDMS   44 (220)
T ss_pred             CCCcEEEEECCCCCCHHHHHHhcC--CCCEEEecccc
Confidence            346789999999999999999996  23556666553

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PF13245 AAA_19: Part of AAA domain

Probab=98.01  E-value=8.2e-06  Score=49.62  Aligned_cols=26  Identities=38%  Similarity=0.571  Sum_probs=19.8

Q ss_pred             CCeEEEEEcCCCCChh-HHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKG-TQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKs-Tla~~L~~~l   45 (209)
                      ...+++|.|+|||||| |+++.++..+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567888999999999 6666666555

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.00  E-value=3.2e-05  Score=61.43  Aligned_cols=114  Identities=25%  Similarity=0.351  Sum_probs=64.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcC-CchHHHHHH-HHHc-CCCCCHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSG-SENGTMIQN-MIKE-GKIVPSEVTIKL   88 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~   88 (209)
                      ....|.+|+++|.=||||||.|-.||.+|.     ..+++. |++|...... ..++..... ++.. ...-|.++....
T Consensus        96 ~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a  174 (451)
T COG0541          96 AKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA  174 (451)
T ss_pred             CCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHH
Confidence            355689999999999999999999999883     334444 6666553221 111111110 1111 123344555555


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh----cCCCCcE-EEEEec
Q 028388           89 LQKAMEESGNDKFLIDGFPRNEENRAAFEAV----TKIEPEF-VLFFDC  132 (209)
Q Consensus        89 i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~----~~~~~~~-~i~L~~  132 (209)
                      ++.+-.. ....+|+|.-.+.......+.++    ....|+- ++++++
T Consensus       175 l~~ak~~-~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa  222 (451)
T COG0541         175 LEKAKEE-GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA  222 (451)
T ss_pred             HHHHHHc-CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence            5555442 25788999766554444444443    3445654 444455

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.00  E-value=6.3e-06  Score=63.78  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...|+|.|+||+||||+++.|++.+|++++.
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r   94 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR   94 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence            3459999999999999999999999987763

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PHA03133 thymidine kinase; Provisional

Probab=97.99  E-value=0.0013  Score=51.43  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +-..|+|.|+.|.||||+++.+...++
T Consensus        39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~   65 (368)
T PHA03133         39 ALLRIYVDGPHGLGKTTTAAALAAALG   65 (368)
T ss_pred             eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence            345799999999999999988888775

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.99  E-value=2.6e-05  Score=58.41  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH-h--C--CceecHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH-F--G--YTHLSAG   53 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~-l--~--~~~i~~~   53 (209)
                      +++.+++|.|+||||||+++..++-. +  |  ..+++.+
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e   58 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE   58 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence            35679999999999999999875543 2  2  5566643

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00022  Score=54.20  Aligned_cols=43  Identities=23%  Similarity=0.404  Sum_probs=34.6

Q ss_pred             CCCeE-EEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHH
Q 028388           19 KKPTV-VFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIK   61 (209)
Q Consensus        19 ~~~~~-i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~   61 (209)
                      .+|+. |++.||||.|||.||+.+|.+-|-  .-||.+|++.+.+-
T Consensus       163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG  208 (439)
T KOG0739|consen  163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG  208 (439)
T ss_pred             CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence            45664 999999999999999999999884  44667788877643

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.97  E-value=0.00042  Score=55.89  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      |.-+++.||||+||||+|+.+++.+++.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4558899999999999999999999874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.96  E-value=9.2e-06  Score=60.44  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..+|.|+|+||+|||||...|...+
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            467899999999999999999999887

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.96  E-value=8e-06  Score=58.69  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~   53 (209)
                      +++|.|+||+|||+++..++...     ...+++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            37899999999999999876544     35566653

A related protein is found in archaea.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.96  E-value=0.00043  Score=55.20  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      |..++++||||+||||+|+.+++.+++
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999999999975

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.95  E-value=4.4e-06  Score=55.57  Aligned_cols=28  Identities=29%  Similarity=0.490  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ++|.|+||+||||+++.|++.++..+..
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            7899999999999999999999866543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.95  E-value=1.3e-05  Score=54.75  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999999988

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.95  E-value=1e-05  Score=64.92  Aligned_cols=40  Identities=23%  Similarity=0.465  Sum_probs=31.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLR   57 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~   57 (209)
                      ...|.-|++.||||+|||++|+.++.+++..+  ++..++..
T Consensus       162 ~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~  203 (389)
T PRK03992        162 IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ  203 (389)
T ss_pred             CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence            34567799999999999999999999998655  44445444

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.95  E-value=0.00012  Score=56.40  Aligned_cols=92  Identities=32%  Similarity=0.364  Sum_probs=58.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC-ceecHhHHHHHHHHc-CCchHHHHHHH-HH-cCCCCCHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GY-THLSAGDLLRAEIKS-GSENGTMIQNM-IK-EGKIVPSEVTIKLLQ   90 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~-~~i~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~   90 (209)
                      ..+|.+|++.|..|+||||-.-+||..|   |. .++..+|.+|..... -..|++..--. +. ...--|.......++
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            4579999999999999999999999988   33 456677888865322 11122211111 11 123334456677777


Q ss_pred             HHHHhcCCCeEEEeCCCCCH
Q 028388           91 KAMEESGNDKFLIDGFPRNE  110 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~  110 (209)
                      .+..+ ....+++|.-.+..
T Consensus       216 ~Akar-~~DvvliDTAGRLh  234 (340)
T COG0552         216 AAKAR-GIDVVLIDTAGRLH  234 (340)
T ss_pred             HHHHc-CCCEEEEeCccccc
Confidence            77664 36788899654443

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.94  E-value=1.1e-05  Score=66.59  Aligned_cols=31  Identities=19%  Similarity=0.444  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ...+++++|||||||||..+.|++++|+.+.
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            3568999999999999999999999997665

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.94  E-value=1.1e-05  Score=58.21  Aligned_cols=120  Identities=15%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-HHHcCCc--hHHHH---------HHHHHcCCCCCHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIKSGSE--NGTMI---------QNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-~~~~~~~--~~~~~---------~~~~~~~~~~~~~~~~~~i   89 (209)
                      .+++|.||+|+|||.+|-.||+++|+++|+.|.+-.= .+.-++.  ...++         ...+..|. ++.+...+.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            4789999999999999999999999999987654211 1011111  00000         01122223 4444444444


Q ss_pred             HHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCC---CCcEEEEEecCH-HHHHHHHhhc
Q 028388           90 QKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKI---EPEFVLFFDCSE-EEMERRILNR  144 (209)
Q Consensus        90 ~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~---~~~~~i~L~~~~-~~~~~R~~~r  144 (209)
                      ...+.. ..+.++|++|=  +..-...+.+-...   -.-.+.++..+. +.-..|..+|
T Consensus        81 i~~v~~~~~~~~~IlEGG--SISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R  138 (233)
T PF01745_consen   81 ISEVNSYSAHGGLILEGG--SISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR  138 (233)
T ss_dssp             HHHHHTTTTSSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred             HHHHHhccccCceEEeCc--hHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence            444443 34889999972  23333333331222   122366777755 5566676666

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.93  E-value=0.00097  Score=52.50  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.+.++|.||||+||||+++.+++.+.
T Consensus        34 ~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         34 PNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3434688999999999999999999874

>PRK04328 hypothetical protein; Provisional

Probab=97.93  E-value=3.5e-05  Score=58.11  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH-h--C--CceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH-F--G--YTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~-l--~--~~~i~~   52 (209)
                      +++.+++|.|+||+|||+++..++.. +  |  ..+++.
T Consensus        21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~   59 (249)
T PRK04328         21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL   59 (249)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence            35679999999999999999986543 2  2  455664

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.93  E-value=3.5e-05  Score=57.57  Aligned_cols=39  Identities=18%  Similarity=0.347  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR   57 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~   57 (209)
                      +++.+++|.|+|||||||++..++...   |  ..+++.++-..
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~   66 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK   66 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence            457799999999999999999986543   2  45566544333

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.92  E-value=0.00064  Score=56.49  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      |..++++||+|+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         38 HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5568999999999999999999999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.92  E-value=1.2e-05  Score=62.66  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++.+|.|+|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4678899999999999999999988777

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.92  E-value=0.00038  Score=57.57  Aligned_cols=28  Identities=21%  Similarity=0.223  Sum_probs=25.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++||||+||||+|+.+++.+++.
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            5679999999999999999999999864

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.92  E-value=8.8e-06  Score=53.10  Aligned_cols=23  Identities=26%  Similarity=0.601  Sum_probs=20.6

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhC
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      |+|.|+||+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999988654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.91  E-value=0.00056  Score=57.07  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +..++++||+|+||||+|+.+++.+++
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999999975

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.91  E-value=1.4e-05  Score=64.07  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=29.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...|.-+++.||||+|||++++.++..++..++.
T Consensus       176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~  209 (398)
T PTZ00454        176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR  209 (398)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            3457789999999999999999999999876654

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.91  E-value=1.3e-05  Score=60.82  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ..-++|.|+||+|||++|+.|++.+|.+++
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            345778999999999999999999987665

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.91  E-value=0.00049  Score=56.62  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      |.-++++||+|+||||+|+.+++.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            4579999999999999999999998763

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.89  E-value=1.1e-05  Score=64.92  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..|+|.||||+||||+|+.|++.++.+++..
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            4689999999999999999999999877655

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.89  E-value=1.5e-05  Score=62.42  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...|+|.|+||||||||++.|++.++.+++.
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4589999999999999999999999987754

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.89  E-value=7.4e-05  Score=52.83  Aligned_cols=29  Identities=28%  Similarity=0.555  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC--Cceec
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG--YTHLS   51 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~--~~~i~   51 (209)
                      +++|.|++|||||++|..++...+  ..|+.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~a   31 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGPVTYIA   31 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence            478999999999999999987755  34443

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.89  E-value=0.00014  Score=60.02  Aligned_cols=30  Identities=27%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      ..|.-++|.||||+|||++++.+++.++..
T Consensus       214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            346679999999999999999999998643

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.88  E-value=1.1e-05  Score=64.31  Aligned_cols=27  Identities=26%  Similarity=0.631  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +..=|+|.|+||+||||+|+.||+.|.
T Consensus       262 raeGILIAG~PGaGKsTFaqAlAefy~  288 (604)
T COG1855         262 RAEGILIAGAPGAGKSTFAQALAEFYA  288 (604)
T ss_pred             hhcceEEecCCCCChhHHHHHHHHHHH
Confidence            345599999999999999999999884

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.88  E-value=1.4e-05  Score=60.42  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=26.1

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...++.+|.|+|+||+||||+...|..+|
T Consensus        47 ~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          47 RTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             cCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            34567899999999999999999999988

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.88  E-value=1.6e-05  Score=63.27  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..|.-++|.||||+|||++++.++..++..++.
T Consensus       154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~  186 (364)
T TIGR01242       154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR  186 (364)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe
Confidence            346679999999999999999999999866644

Many proteins may score above the trusted cutoff because an internal

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.88  E-value=0.00088  Score=56.70  Aligned_cols=29  Identities=17%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      -+..++++|++|+||||+++.|++.+++.
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~   65 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSLNCQ   65 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            35678999999999999999999999863

>CHL00176 ftsH cell division protein; Validated

Probab=97.88  E-value=0.00055  Score=58.26  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...|.-+++.||||+|||++|+.++.+.+.+++..
T Consensus       213 ~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        213 AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            34467799999999999999999999998776653

>TIGR02012 tigrfam_recA protein RecA

Probab=97.87  E-value=8.7e-05  Score=57.65  Aligned_cols=84  Identities=17%  Similarity=0.262  Sum_probs=48.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      ++..++.|.|+|||||||||..++...   +  ..+|+..+.........  .+-.....+. ......+.....+...+
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~--lGvd~~~l~v-~~p~~~eq~l~~~~~li  129 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARK--LGVDIDNLLV-SQPDTGEQALEIAETLV  129 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHH--cCCCHHHeEE-ecCCCHHHHHHHHHHHh
Confidence            356799999999999999988876554   2  55777655444332211  1111111111 11222334455555555


Q ss_pred             HhcCCCeEEEeC
Q 028388           94 EESGNDKFLIDG  105 (209)
Q Consensus        94 ~~~~~~~~i~dg  105 (209)
                      ....-..+|+|+
T Consensus       130 ~~~~~~lIVIDS  141 (321)
T TIGR02012       130 RSGAVDIIVVDS  141 (321)
T ss_pred             hccCCcEEEEcc
Confidence            544567889997

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.00023  Score=55.92  Aligned_cols=40  Identities=28%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHHHH
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE   59 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~~~   59 (209)
                      +|+ -+++.||||+|||-||+.++.+-|-.+  |+...+..++
T Consensus       243 rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKw  285 (491)
T KOG0738|consen  243 RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKW  285 (491)
T ss_pred             cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhh
Confidence            566 489999999999999999999999555  4444444433

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.86  E-value=1.9e-05  Score=61.34  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      ..+..++|.||||+|||++++.+++.++..+
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            3456789999999999999999999998543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.86  E-value=1.8e-05  Score=53.70  Aligned_cols=29  Identities=31%  Similarity=0.622  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      ++..+++++|.||+|||||...|+. -|+.
T Consensus         7 nR~~~fIltGgpGaGKTtLL~aLa~-~Gfa   35 (183)
T COG3911           7 NRHKRFILTGGPGAGKTTLLAALAR-AGFA   35 (183)
T ss_pred             ccceEEEEeCCCCCcHHHHHHHHHH-cCce
Confidence            3446899999999999999999975 4543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=97.86  E-value=1.6e-05  Score=62.22  Aligned_cols=42  Identities=33%  Similarity=0.647  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAE   59 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~~~~~   59 (209)
                      .+-|..++|.||||+|||.+|+.++.++|..+  ++.++++.++
T Consensus       145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~  188 (413)
T PLN00020        145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN  188 (413)
T ss_pred             CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence            35577899999999999999999999999655  5555555433

>COG4240 Predicted kinase [General function prediction only]

Probab=97.85  E-value=2.4e-05  Score=56.94  Aligned_cols=43  Identities=37%  Similarity=0.449  Sum_probs=34.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh---C---CceecHhHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---G---YTHLSAGDLLRAE   59 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~---~~~i~~~~~~~~~   59 (209)
                      ...+|.++.|+||-||||||++..|...|   |   ...+|.||++.-+
T Consensus        46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth   94 (300)
T COG4240          46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH   94 (300)
T ss_pred             hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence            44579999999999999999999887766   2   3557888887654

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.85  E-value=0.00012  Score=57.03  Aligned_cols=84  Identities=17%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      ++..++.|.|+|||||||||..++...   +  ..+|+..+.+.......  .+......+- ......+....++...+
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~--lGvd~~~l~v-~~p~~~eq~l~i~~~li  129 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKK--LGVDLDNLLI-SQPDTGEQALEIADSLV  129 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHH--cCCCHHHhee-cCCCCHHHHHHHHHHHH
Confidence            356799999999999999999987544   2  56777654443322211  1111122221 12223344455666655


Q ss_pred             HhcCCCeEEEeC
Q 028388           94 EESGNDKFLIDG  105 (209)
Q Consensus        94 ~~~~~~~~i~dg  105 (209)
                      ....-..+|+|+
T Consensus       130 ~s~~~~lIVIDS  141 (325)
T cd00983         130 RSGAVDLIVVDS  141 (325)
T ss_pred             hccCCCEEEEcc
Confidence            554567889997

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.85  E-value=0.00052  Score=59.85  Aligned_cols=28  Identities=14%  Similarity=0.202  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++|+|+||+||||+|+.|++.+++.
T Consensus        38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         38 HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            4567999999999999999999999864

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=1.7e-05  Score=66.52  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGD   54 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~   54 (209)
                      ..+++++++.||||+|||+|++.+|+.+|-.+  ++.|-
T Consensus       347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG  385 (782)
T COG0466         347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG  385 (782)
T ss_pred             cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc
Confidence            34678999999999999999999999998544  55433

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.84  E-value=2.8e-05  Score=51.62  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=27.8

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +..+.||-++.+.|+||+|||.+++.||+.+
T Consensus        47 ~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   47 NPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             CCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            3467889999999999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=97.84  E-value=0.00049  Score=59.00  Aligned_cols=28  Identities=18%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++|+|++|+||||+++.|++.+++.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            5678899999999999999999999864

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.84  E-value=1.7e-05  Score=57.69  Aligned_cols=24  Identities=38%  Similarity=0.612  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +|+|+||+||||||+++.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999999999999999887774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK08116 hypothetical protein; Validated

Probab=97.84  E-value=0.00067  Score=51.74  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      +.-++|.|+||+|||.|+..+++.+   +  ..+++..+++...
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i  157 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI  157 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            3458999999999999999999986   3  4566777766554

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=97.84  E-value=0.00044  Score=58.67  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++|++|+||||+|+.+++.+++.
T Consensus        38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         38 HHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4458999999999999999999999874

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.83  E-value=2.8e-05  Score=64.18  Aligned_cols=88  Identities=14%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCC---------CCCHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK---------IVPSEV   84 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~   84 (209)
                      .++.+++|.|+||+||||++..++...   |  ..|++.++-....+.....++-.+..+...+.         ....+.
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~  340 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED  340 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence            356799999999999999999988755   2  56777544333333222222222333322221         111133


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCC
Q 028388           85 TIKLLQKAMEESGNDKFLIDGF  106 (209)
Q Consensus        85 ~~~~i~~~~~~~~~~~~i~dg~  106 (209)
                      ....+...+.......+|+|+.
T Consensus       341 ~~~~i~~~i~~~~~~~vvIDsi  362 (484)
T TIGR02655       341 HLQIIKSEIADFKPARIAIDSL  362 (484)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCH
Confidence            4555555665555678888863

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.83  E-value=1.8e-05  Score=63.46  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..|+|.||||+|||++|+.|++.++.+++..
T Consensus       117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~  147 (413)
T TIGR00382       117 SNILLIGPTGSGKTLLAQTLARILNVPFAIA  147 (413)
T ss_pred             ceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence            5799999999999999999999998776543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.83  E-value=0.001  Score=53.88  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAEI   60 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~~~   60 (209)
                      ...++|.|++|+|||+|++.+++.+     +  ..+++..++.....
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~  182 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV  182 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence            3468999999999999999999876     2  45778777766543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=1.6e-05  Score=66.66  Aligned_cols=37  Identities=22%  Similarity=0.498  Sum_probs=31.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDL   55 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~   55 (209)
                      .+++++++.||||+|||++++.+|..||  |..+|.|-+
T Consensus       436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            4689999999999999999999999998  555665543

>TIGR00101 ureG urease accessory protein UreG

Probab=97.83  E-value=2.1e-05  Score=57.25  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      |+.|.|.|++||||||+.+.+.+.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999999988763

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=0.0004  Score=55.03  Aligned_cols=36  Identities=14%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      ...+.+++|.||+||||||++..|+..+   +  ..+++.|
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD  243 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD  243 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            3467899999999999999999999766   2  3456654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.82  E-value=2.5e-05  Score=63.26  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=28.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...|.-++|.||||+|||++|+.++.+++..++.
T Consensus       214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            3456779999999999999999999999865543

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.82  E-value=0.00049  Score=60.13  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +.-++|.|++|+||||+++.|++.|++.
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            4458999999999999999999999863

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.82  E-value=1.3e-05  Score=59.94  Aligned_cols=21  Identities=43%  Similarity=0.734  Sum_probs=18.8

Q ss_pred             EEcCCCCChhHHHHHHHHHhC
Q 028388           26 VLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        26 i~G~pgsGKsTla~~L~~~l~   46 (209)
                      |.||+||||||+++.+.+.+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~   21 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLE   21 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999884

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.82  E-value=1.8e-05  Score=55.09  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++...++-.|.|+||+||||||+.+.++.-.
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            3445567789999999999999999998644

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.81  E-value=0.00042  Score=58.19  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK   61 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~   61 (209)
                      ..++|.|++|+|||.|++.++..+       ...+++..+++.++..
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~  361 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN  361 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence            348999999999999999999865       2478888887766643

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.81  E-value=2.3e-05  Score=53.67  Aligned_cols=24  Identities=33%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|.|+|+.+|||||+++.|.+++
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999887

>PRK04195 replication factor C large subunit; Provisional

Probab=97.81  E-value=2.1e-05  Score=65.02  Aligned_cols=32  Identities=19%  Similarity=0.533  Sum_probs=28.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      +..++|.||||+||||+++.|++.+++.++..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            67899999999999999999999999766543

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.81  E-value=1.9e-05  Score=56.51  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ....+.+++|.|++|+||||+.+.+.+.+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678999999999999999999888774

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.81  E-value=2.3e-05  Score=55.54  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .+++.||+|+|||.+|+.|++.+..
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            6899999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.80  E-value=2.2e-05  Score=65.05  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=29.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...|.-+++.||||+|||++++.|+...+.+++..
T Consensus        85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i  119 (495)
T TIGR01241        85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  119 (495)
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence            34456799999999999999999999998766543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.80  E-value=2.1e-05  Score=50.89  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .....+++|.|++||||||+++.+.
T Consensus        12 i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          12 VYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            3445789999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.80  E-value=2.6e-05  Score=61.23  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      +..++|.||||+||||+|+.+++.++..+
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            45789999999999999999999998654

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.80  E-value=0.00046  Score=58.34  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=25.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++||+|+||||+|+.|++.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5678999999999999999999999864

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00022  Score=58.22  Aligned_cols=39  Identities=23%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +..+-..-|+=|+++||||.|||-||+.+|-+-|.+++.
T Consensus       329 ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~  367 (752)
T KOG0734|consen  329 FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY  367 (752)
T ss_pred             hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence            455656668889999999999999999999999987765

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.79  E-value=2.2e-05  Score=65.89  Aligned_cols=34  Identities=26%  Similarity=0.481  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      +..++.+++||||.||||||+.+|++-||.++..
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            3456899999999999999999999999988764

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.79  E-value=0.00071  Score=56.96  Aligned_cols=28  Identities=14%  Similarity=0.260  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++||+|+||||+|+.|++.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         35 NHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            5568999999999999999999999864

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.79  E-value=2.8e-05  Score=44.98  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+.+|+|++||||||+..++.=
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.79  E-value=3.3e-05  Score=51.35  Aligned_cols=29  Identities=28%  Similarity=0.462  Sum_probs=25.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +...+|++.|.-||||||+++.+++.+|.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            34579999999999999999999999975

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.78  E-value=0.00058  Score=55.81  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK   61 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~   61 (209)
                      .-++|.|+||+|||+|++.++..+       ...+++.++++.....
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~  177 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD  177 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence            459999999999999999999875       3567888887776643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.78  E-value=2.1e-05  Score=57.70  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=25.3

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-+++|.||+|||||||...|.--.
T Consensus        25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3445667899999999999999999997433

>PHA02244 ATPase-like protein

Probab=97.78  E-value=2.3e-05  Score=61.59  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=29.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      .-|+|.|+||+|||++|+.|+..++.+++....+
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            3478899999999999999999999888776543

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=97.77  E-value=9.5e-05  Score=60.73  Aligned_cols=135  Identities=16%  Similarity=0.143  Sum_probs=69.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-----HHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-----EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--   95 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--   95 (209)
                      =.+++||-|+||||+|+.+|+.+|+.--..++.+.+     .+..+....-  -+ ++....-..+..+++.++..-.  
T Consensus        40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv--iE-iDaASn~gVddiR~i~e~v~y~P~  116 (515)
T COG2812          40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV--IE-IDAASNTGVDDIREIIEKVNYAPS  116 (515)
T ss_pred             hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc--hh-hhhhhccChHHHHHHHHHhccCCc
Confidence            478999999999999999999999764222122222     2222211100  00 1111111233445555554432  


Q ss_pred             -cCCCeEEEeC-CCCCHHHHHHHHHhcCCCCcEEEEEec------CHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           96 -SGNDKFLIDG-FPRNEENRAAFEAVTKIEPEFVLFFDC------SEEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        96 -~~~~~~i~dg-~~~~~~~~~~~~~~~~~~~~~~i~L~~------~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                       ...+++|+|- +..+..-...+...--.+|.+++|+=+      -|.+++.|.+.-  .-..-+.+.+..++..
T Consensus       117 ~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f--~fkri~~~~I~~~L~~  189 (515)
T COG2812         117 EGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRF--DFKRLDLEEIAKHLAA  189 (515)
T ss_pred             cccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccc--cccCCCHHHHHHHHHH
Confidence             2278999997 333333333333312234555444433      245677777654  2223344556555544

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.77  E-value=0.00084  Score=56.09  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++|+||+||||+|+.+++.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         38 HHAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4567899999999999999999999863

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.77  E-value=0.00013  Score=55.32  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=26.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~   53 (209)
                      ++.+++|.|+||+||||+|..++-..     ...+++.+
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            56799999999999999999976543     35666653

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.77  E-value=3.5e-05  Score=57.11  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~   56 (209)
                      ...+..++|.|++|+||||+++.++....     +.+++..++.
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~   78 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA   78 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence            45577899999999999999999998763     4566665543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00024  Score=60.56  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH--hHHHHHHHHcCCchH-HHHHH---------------HH-
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA--GDLLRAEIKSGSENG-TMIQN---------------MI-   74 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~--~~~~~~~~~~~~~~~-~~~~~---------------~~-   74 (209)
                      ..+--.=|+=++++||||+|||-||+++|-+=|.++++.  .+++......+...- ..+..               .+ 
T Consensus       337 ~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~  416 (774)
T KOG0731|consen  337 QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVG  416 (774)
T ss_pred             HHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEeccccccc
Confidence            334334466799999999999999999999999888663  455544432221111 11110               00 


Q ss_pred             -Hc-C--CCCCHHHHHHHHHHHHHhcC----CCeEEEeCCCCCHHHHH-HHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           75 -KE-G--KIVPSEVTIKLLQKAMEESG----NDKFLIDGFPRNEENRA-AFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        75 -~~-~--~~~~~~~~~~~i~~~~~~~~----~~~~i~dg~~~~~~~~~-~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                       .. +  .....+...+.+.+.+.+.+    ...||+.+........+ .+.  .....|-.|+++.|...-...+-+-
T Consensus       417 ~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~all--rpGRfdr~i~i~~p~~~~r~~i~~~  493 (774)
T KOG0731|consen  417 RKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALL--RPGRFDRQIQIDLPDVKGRASILKV  493 (774)
T ss_pred             ccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhc--CCCccccceeccCCchhhhHHHHHH
Confidence             01 1  11233444556666665544    45566665333332222 222  4567788888888876655555543

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.76  E-value=0.0014  Score=55.64  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +.-++++||+|+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4568999999999999999999999874

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.76  E-value=0.00024  Score=61.82  Aligned_cols=33  Identities=24%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..|.-|++.||||+|||++|+.|+..++..++.
T Consensus       485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~  517 (733)
T TIGR01243       485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA  517 (733)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            446678999999999999999999999876654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.76  E-value=2.7e-05  Score=58.57  Aligned_cols=29  Identities=31%  Similarity=0.461  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      .=-+++.||||-||||||+.+|.++|..+
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            34689999999999999999999998544

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=6.7e-05  Score=58.21  Aligned_cols=62  Identities=23%  Similarity=0.383  Sum_probs=45.0

Q ss_pred             cCcchhh--cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHHHHcCCchH
Q 028388            6 ETPVKEA--DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENG   67 (209)
Q Consensus         6 ~~~~~~~--~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~~~~~~~~~   67 (209)
                      +-|.+.+  +..+--.-|+=|++.||||+|||-+|+++|.+.++.++  ..+.+..+++-.+..+-
T Consensus       168 ELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlV  233 (406)
T COG1222         168 ELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLV  233 (406)
T ss_pred             cccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHH
Confidence            3444433  34444455777999999999999999999999997664  45788888866655444

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.76  E-value=3.4e-05  Score=60.08  Aligned_cols=28  Identities=36%  Similarity=0.619  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+|.+|+++||+||||||++..|+..+
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            3468899999999999999999999877

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.75  E-value=1.7e-05  Score=57.06  Aligned_cols=31  Identities=26%  Similarity=0.465  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ........++|.|++||||||+.+.|...+.
T Consensus        20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          20 LAVEARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            3344577899999999999999999988764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.74  E-value=3.9e-05  Score=58.51  Aligned_cols=28  Identities=32%  Similarity=0.576  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+|.+|+++|++|+||||.+..|+..+
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l   96 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKL   96 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            3567899999999999999999999877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=97.74  E-value=6e-05  Score=56.03  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=29.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLL   56 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~   56 (209)
                      ....++|.|++|+|||++++.++...     .+.+++..+..
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            34578999999999999999999876     56677765543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.74  E-value=3.1e-05  Score=59.01  Aligned_cols=27  Identities=22%  Similarity=0.495  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.+++|.|++||||||+++.+.+.+.
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            355899999999999999999999876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.74  E-value=3.7e-05  Score=62.33  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ...++..++|.||||+||||+|+.|++.++..++.
T Consensus        32 ~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~   66 (413)
T PRK13342         32 EAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA   66 (413)
T ss_pred             HcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            34456678899999999999999999998865544

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.73  E-value=3.3e-05  Score=61.65  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=25.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+|++|+|+|++|||||||+..|..++.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            3689999999999999999999998886

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=97.73  E-value=0.0014  Score=55.15  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +.-+++.||+|+||||+|+.+++.+++
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            557899999999999999999999974

>PRK05973 replicative DNA helicase; Provisional

Probab=97.73  E-value=3.1e-05  Score=57.61  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~   52 (209)
                      .+..+++|.|.||+||||++..++...   |  ..+++.
T Consensus        62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl  100 (237)
T PRK05973         62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL  100 (237)
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence            456799999999999999999887644   4  445664

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.71  E-value=0.0047  Score=50.57  Aligned_cols=38  Identities=16%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~   59 (209)
                      .-++|.|++|+|||+|++.++..+     ...+++.+++....
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~  184 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL  184 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH
Confidence            357899999999999999999876     25677777666554

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=97.71  E-value=0.00011  Score=57.75  Aligned_cols=111  Identities=21%  Similarity=0.236  Sum_probs=67.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~   99 (209)
                      ..++++.|++|||||++.+.|.+. +..+++..+..+..   ++.++...     . ..-+.....+.+...+...+ ..
T Consensus       141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~-----~-~qpsQ~~Fe~~l~~~l~~~~~~~  210 (345)
T PRK11784        141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG-----G-PQPSQKDFENLLAEALLKLDPAR  210 (345)
T ss_pred             CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC-----C-CCcchHHHHHHHHHHHHcCCCCC
Confidence            456789999999999999999754 77789886665544   33222110     0 11122333556666666544 46


Q ss_pred             eEEEeCCCCCH----HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          100 KFLIDGFPRNE----ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       100 ~~i~dg~~~~~----~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .+++++-.+.+    -....+..+   .-.-+|++++|.+..++|+...
T Consensus       211 ~i~vE~Es~~IG~~~lP~~l~~~m---~~~~~v~i~~~~e~Rv~~l~~~  256 (345)
T PRK11784        211 PIVVEDESRRIGRVHLPEALYEAM---QQAPIVVVEAPLEERVERLLED  256 (345)
T ss_pred             eEEEEeccccccCccCCHHHHHHH---hhCCEEEEECCHHHHHHHHHHH
Confidence            77777522221    111222221   1124789999999999999987

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.71  E-value=0.0013  Score=55.80  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++|+|++|+||||+++.|++.+++.
T Consensus        38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~   65 (585)
T PRK14950         38 AHAYLFTGPRGVGKTSTARILAKAVNCT   65 (585)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999999753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.71  E-value=3.3e-05  Score=57.08  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=26.3

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++...++-++.|.||+|||||||.+.++--.
T Consensus        23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3455677899999999999999999998654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.71  E-value=5e-05  Score=58.35  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      -++|.|+||+||||+|+.+++.+
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            69999999999999999888876

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.71  E-value=3.8e-05  Score=52.83  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      ..-++|.|++|+||||++..|.++ ++.+++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            467999999999999999998765 66666543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.70  E-value=3.3e-05  Score=52.65  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.|++.|++|||||||++.|....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            468999999999999999997633

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09354 recA recombinase A; Provisional

Probab=97.70  E-value=0.00023  Score=55.92  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=48.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      ++..++.|.|+|||||||||..++...   |  +.+|+..+-+.......  ++..+...+.. ...+.+....++...+
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~--lGvdld~lli~-qp~~~Eq~l~i~~~li  134 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKK--LGVDIDNLLVS-QPDTGEQALEIADTLV  134 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHH--cCCCHHHeEEe-cCCCHHHHHHHHHHHh
Confidence            356799999999999999999877544   2  56777655444322111  11111222211 2223344455566655


Q ss_pred             HhcCCCeEEEeC
Q 028388           94 EESGNDKFLIDG  105 (209)
Q Consensus        94 ~~~~~~~~i~dg  105 (209)
                      ....-..+|+|+
T Consensus       135 ~s~~~~lIVIDS  146 (349)
T PRK09354        135 RSGAVDLIVVDS  146 (349)
T ss_pred             hcCCCCEEEEeC
Confidence            554567899997

>PRK13695 putative NTPase; Provisional

Probab=97.69  E-value=4.2e-05  Score=54.45  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      |.|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999988765

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.69  E-value=4.3e-05  Score=56.01  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=26.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +..+.+++|.++|++||||||+...+.+.++
T Consensus        17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3455789999999999999999999988764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00096  Score=53.31  Aligned_cols=151  Identities=13%  Similarity=0.254  Sum_probs=86.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-----ecHhHHHHHHHHcCCchHHHHHHHH----HcCCCCCHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-----LSAGDLLRAEIKSGSENGTMIQNMI----KEGKIVPSEVTI   86 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   86 (209)
                      ..+..+.+|++.|.|++|||.++..|.+.++|.-     ++.+.+-+........     ..++    ..+..+..++..
T Consensus        23 ~~~~~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s-----~~ff~p~n~~~~~lr~~~a~   97 (438)
T KOG0234|consen   23 LFMGSKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS-----EPFFLPDNAEASKLRKQLAL   97 (438)
T ss_pred             cccCCceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc-----ccccccCChhhhhhhHHHHH
Confidence            4566788999999999999999999999987644     4445433333221111     0111    011122222323


Q ss_pred             HHHHHH---HHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEe--c-CHHHHHHHHhhc-------cCCCCCCc
Q 028388           87 KLLQKA---MEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFD--C-SEEEMERRILNR-------NQGREDDN  152 (209)
Q Consensus        87 ~~i~~~---~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~--~-~~~~~~~R~~~r-------~~~~~~~~  152 (209)
                      .++.+.   +....++..|.|..+.+......+..+.. .....++|+.  | +++.+-+.+..+       .....+..
T Consensus        98 ~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~~~~e~a  177 (438)
T KOG0234|consen   98 LALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKGKDQEEA  177 (438)
T ss_pred             HHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCCCCHHHH
Confidence            333333   33345899999998888877776655321 1222233333  3 555555555545       11122335


Q ss_pred             HHHHHHHHHHHHhhchhHH
Q 028388          153 VETIRKRFKVFLESSLPVV  171 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~  171 (209)
                      .+.+.+++..|.....|+-
T Consensus       178 ~~dfl~ri~~ye~~YePld  196 (438)
T KOG0234|consen  178 LKDFLKRIRNYEKYYEPLD  196 (438)
T ss_pred             HHHHHHHHHhhhhccCcCC
Confidence            5677778888877777764

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=97.69  E-value=0.0015  Score=55.34  Aligned_cols=29  Identities=21%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      +.-++++|++|+||||+|+.|++.+++..
T Consensus        46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~   74 (598)
T PRK09111         46 AQAFMLTGVRGVGKTTTARILARALNYEG   74 (598)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence            55799999999999999999999998653

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.69  E-value=3.8e-05  Score=63.60  Aligned_cols=28  Identities=21%  Similarity=0.488  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.+++++.||||+|||||++.|++.+.
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            3567999999999999999999998763

>PRK08084 DNA replication initiation factor; Provisional

Probab=97.68  E-value=5.5e-05  Score=56.53  Aligned_cols=35  Identities=6%  Similarity=0.184  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGD   54 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~   54 (209)
                      .+..++|.||||+|||++++.++....     ..+++.+.
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            345799999999999999999998764     45666654

>PRK06893 DNA replication initiation factor; Validated

Probab=97.68  E-value=6e-05  Score=56.12  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=27.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~   53 (209)
                      .+.++|.|+||+|||+|++.++..+     +..+++..
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            3578999999999999999999876     45666653

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.68  E-value=0.0004  Score=51.35  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-------CCceecHhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-------GYTHLSAGDLLRAEIK   61 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-------~~~~i~~~~~~~~~~~   61 (209)
                      ..++|.|++|+|||.|.+.++.++       ...+++..++......
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~   81 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD   81 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence            357899999999999999998765       2568888888777643

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=4.5e-05  Score=58.28  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...|++.||+|||||-||+.||+.++.++.-.
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA  128 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA  128 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence            34689999999999999999999999877544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.68  E-value=4.9e-05  Score=58.35  Aligned_cols=27  Identities=30%  Similarity=0.518  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++.+|+|+||+||||||++..|+..+
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998766

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.68  E-value=5.2e-05  Score=53.93  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=26.8

Q ss_pred             CCCC-eEEEEEcCCCCChhHHHHHHHHHh----CCceecH
Q 028388           18 VKKP-TVVFVLGGPGSGKGTQCANIVEHF----GYTHLSA   52 (209)
Q Consensus        18 ~~~~-~~i~i~G~pgsGKsTla~~L~~~l----~~~~i~~   52 (209)
                      +++| ..|-+.||||||||||...+.+.+    ...+|..
T Consensus         9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~   48 (202)
T COG0378           9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG   48 (202)
T ss_pred             hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence            3456 789999999999999988877666    4445544

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00047  Score=57.28  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..|..+++.||||+|||++|+.++..++..+++.
T Consensus       274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            3456899999999999999999999888777664

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.67  E-value=0.00067  Score=55.72  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRAEI   60 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~~~   60 (209)
                      ..++|.|+||+|||+|++.++.++     +  ..+++..++..+..
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~  194 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV  194 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            458999999999999999999887     2  45777777765543

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.66  E-value=0.00014  Score=60.08  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=26.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH----h--CCceecHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH----F--GYTHLSAG   53 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~----l--~~~~i~~~   53 (209)
                      .++..++|.|+|||||||+|..++-.    .  +..+++.+
T Consensus        19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e   59 (484)
T TIGR02655        19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE   59 (484)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            35679999999999999999987432    2  35566643

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=97.66  E-value=0.00018  Score=55.88  Aligned_cols=113  Identities=19%  Similarity=0.204  Sum_probs=61.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecH-hHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSA-GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ++.-|+++|.+|+||||++-.|.+.++   .++.+. +|-+++-+..+-.++.+           ..+.-+..+......
T Consensus        49 rgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~e-----------dreenirriaevakl  117 (627)
T KOG4238|consen   49 RGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPE-----------DREENIRRIAEVAKL  117 (627)
T ss_pred             cceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCch-----------hHHHHHHHHHHHHHH
Confidence            455799999999999999999998884   444332 23344443322211110           011112222222221


Q ss_pred             -cCCCeEEEeCCCCCHH----HHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 -SGNDKFLIDGFPRNEE----NRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 -~~~~~~i~dg~~~~~~----~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                       .+...+.+-.|.....    ....+.+ ...-|.+-+|++++.++|.+|-.+.
T Consensus       118 fadaglvcitsfispf~~dr~~arkihe-~~~l~f~ev~v~a~l~vceqrd~k~  170 (627)
T KOG4238|consen  118 FADAGLVCITSFISPFAKDRENARKIHE-SAGLPFFEVFVDAPLNVCEQRDVKG  170 (627)
T ss_pred             HhcCCceeeehhcChhhhhhhhhhhhhc-ccCCceEEEEecCchhhhhhcChHH
Confidence             1223333444433222    2222222 3334667999999999999997664

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.66  E-value=3.2e-05  Score=59.93  Aligned_cols=43  Identities=23%  Similarity=0.550  Sum_probs=33.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHHHHHHHc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLLRAEIKS   62 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~~~~~~~   62 (209)
                      .++-|+|.||||+|||.||-.+++.||    |.-++.+.++.-.+..
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kK  110 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKK  110 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccH
Confidence            356899999999999999999999998    4445555655544333

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.66  E-value=2.8e-05  Score=52.97  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ....+.+++|.|++|||||||.+.|+..+
T Consensus         7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    7 EIKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEEccCCCccccceeeecccc
Confidence            34456789999999999999999998765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.66  E-value=0.00011  Score=52.53  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~   59 (209)
                      ++.-++|.|+||+|||.+|..++.++     ...+++..+++...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45679999999999999999998766     36778888888776

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE

Probab=97.66  E-value=0.0043  Score=47.04  Aligned_cols=27  Identities=33%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             cEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388          125 EFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus       125 ~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      +-+|.++.+.++..+|+.+|  +|+.+..
T Consensus       147 ~niVl~~L~~~E~~rRl~~R--~R~gE~v  173 (281)
T PF00693_consen  147 TNIVLMTLPEEEHLRRLKAR--GRPGERV  173 (281)
T ss_dssp             EEEEEEE--HHHHHHHHHHT--STTT-S-
T ss_pred             CEEEEEeCCHHHHHHHHHHc--CCCcccc
Confidence            44778899999999999999  7777653

The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.65  E-value=0.00011  Score=63.60  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      .+|. .+++.||||+|||++|+.|++.++.+++..
T Consensus       485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i  519 (758)
T PRK11034        485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_pred             CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence            4554 689999999999999999999998766543

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.65  E-value=0.00016  Score=53.86  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=20.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ++..+++|.|+||+||||++..++-
T Consensus        22 ~~g~~~~i~G~~G~GKTtl~~~~~~   46 (230)
T PRK08533         22 PAGSLILIEGDESTGKSILSQRLAY   46 (230)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456999999999999999755443

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.65  E-value=0.00063  Score=53.31  Aligned_cols=38  Identities=18%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~   59 (209)
                      ..++|.|++|+|||+|+..++..+     ...+++..+++...
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l  226 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL  226 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence            669999999999999999999987     25667777776654

>PHA02624 large T antigen; Provisional

Probab=97.64  E-value=6.6e-05  Score=62.44  Aligned_cols=34  Identities=26%  Similarity=0.275  Sum_probs=28.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ++..+++|.||||+||||++..|.+.++...++.
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV  462 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV  462 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence            3455999999999999999999999997656654

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.64  E-value=6.4e-05  Score=52.60  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++|.|+|++||||||++..|...+.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999873

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.64  E-value=4.8e-05  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|.|+|++||||||++..|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.64  E-value=5.3e-05  Score=62.14  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      |..+++.||||+||||+|+.+++.++.
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456899999999999999999999875

>PRK06526 transposase; Provisional

Probab=97.64  E-value=8.4e-05  Score=56.09  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      .+..++|.||||+|||+++..|+...   |  ..+++..+++...
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l  141 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL  141 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence            45679999999999999999998765   3  3334455554443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.64  E-value=4.1e-05  Score=57.38  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++.-+++.++.|.||.|||||||.+.|+..+.
T Consensus        22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            34456688999999999999999999998763

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.64  E-value=5.9e-05  Score=61.50  Aligned_cols=32  Identities=22%  Similarity=0.494  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .+..+.+|+||+|+||||..+.|++.+|+.++
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~  139 (634)
T KOG1970|consen  108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI  139 (634)
T ss_pred             CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence            34568999999999999999999999998776

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.63  E-value=0.0032  Score=53.31  Aligned_cols=28  Identities=14%  Similarity=0.302  Sum_probs=25.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++|++|+||||+++.|++.+++.
T Consensus        38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~   65 (576)
T PRK14965         38 AHAFLFTGARGVGKTSTARILAKALNCE   65 (576)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence            5678999999999999999999999753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.62  E-value=5.1e-05  Score=55.82  Aligned_cols=29  Identities=21%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-.++-++.|.|.+||||||+++.|+-..
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            34567789999999999999999998544

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.62  E-value=4.9e-05  Score=53.01  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +++|.|+||+||||++..++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.62  E-value=5.7e-05  Score=50.00  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .|+|.|++|||||||.+.|....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            38999999999999999998644

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=97.61  E-value=0.00077  Score=50.50  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++.+++|.|+||+||||++..++-..
T Consensus        11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~   37 (242)
T cd00984          11 QPGDLIIIAARPSMGKTAFALNIAENI   37 (242)
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999877654

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.60  E-value=5.6e-05  Score=54.56  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        13 FAAERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.60  E-value=0.002  Score=51.87  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      .|.-+++.||||+||||+|+.+++.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            46679999999999999999999998764

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.60  E-value=0.00023  Score=52.99  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .++.+++|.|+||+||||++..++.
T Consensus        18 ~~G~~~~i~G~~G~GKT~l~~~~~~   42 (229)
T TIGR03881        18 PRGFFVAVTGEPGTGKTIFCLHFAY   42 (229)
T ss_pred             cCCeEEEEECCCCCChHHHHHHHHH
Confidence            4577999999999999999988664

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=97.60  E-value=0.0016  Score=55.50  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++|++|+||||+|+.|++.+++.
T Consensus        38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         38 HHAYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            5679999999999999999999999864

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.60  E-value=7.9e-05  Score=64.73  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..|..|+|.||||+||||+++.|+..++..++.
T Consensus       210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~  242 (733)
T TIGR01243       210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS  242 (733)
T ss_pred             CCCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence            456779999999999999999999999866553

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.60  E-value=8.2e-05  Score=57.68  Aligned_cols=27  Identities=26%  Similarity=0.343  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.+|.|+|+|||||||++..|+..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998876

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.59  E-value=0.00027  Score=52.45  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=22.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ....++.|.|+||+|||+++..++..
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence            35679999999999999999998764

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.58  E-value=6.1e-05  Score=58.96  Aligned_cols=36  Identities=22%  Similarity=0.591  Sum_probs=27.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----CceecHhHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG----YTHLSAGDLL   56 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~----~~~i~~~~~~   56 (209)
                      ++.|+|.||||+|||.+|-.+++.||    |..++.++++
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy   89 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY   89 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence            67899999999999999999999997    3444444444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.58  E-value=6e-05  Score=55.61  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            444567899999999999999999998765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.58  E-value=6.2e-05  Score=55.49  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999998765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.58  E-value=0.00066  Score=50.06  Aligned_cols=115  Identities=20%  Similarity=0.313  Sum_probs=61.4

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh----CCceec--------HhHHHHHHHHc-----CCchH------HHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF----GYTHLS--------AGDLLRAEIKS-----GSENG------TMIQ   71 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l----~~~~i~--------~~~~~~~~~~~-----~~~~~------~~~~   71 (209)
                      ++...++.+..|.|++||||||+.+.+.-.+    |-..+.        .++.+.-...-     ..++.      +.+.
T Consensus        28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVa  107 (263)
T COG1127          28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA  107 (263)
T ss_pred             eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhh
Confidence            4556788899999999999999999997665    222222        22222111000     00000      1111


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCH----HHHHHHHHhcCCCCcEEEE
Q 028388           72 NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNE----ENRAAFEAVTKIEPEFVLF  129 (209)
Q Consensus        72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~----~~~~~~~~~~~~~~~~~i~  129 (209)
                      --+.....++...+..++.-.+..-.-.+.+.|-||...    ..+-.+.+.....|++++|
T Consensus       108 fplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~  169 (263)
T COG1127         108 FPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL  169 (263)
T ss_pred             eehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEe
Confidence            112233445666666666666654334455577777663    3334455534456765554

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.58  E-value=0.00019  Score=62.38  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=27.4

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+|. .+++.||||+|||++|+.|++.++..++.
T Consensus       481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~  514 (731)
T TIGR02639       481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER  514 (731)
T ss_pred             CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence            3555 58999999999999999999999865543

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.57  E-value=0.00035  Score=55.43  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~   53 (209)
                      ++.+|.+.||.|+||||-..+||.++.       ..+|+.|
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD  242 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD  242 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec
Confidence            478999999999999999999998884       4556663

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.57  E-value=6.4e-05  Score=55.31  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567799999999999999999998765

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.57  E-value=0.0027  Score=54.04  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +.-++++|++|+||||+|+.+++.+++.
T Consensus        38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~   65 (620)
T PRK14948         38 APAYLFTGPRGTGKTSSARILAKSLNCL   65 (620)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence            4568999999999999999999999864

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.57  E-value=7.4e-05  Score=57.04  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=25.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ......+|.|.|+||||||||...|...+
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999999999988876

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.56  E-value=6.8e-05  Score=55.04  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+..+
T Consensus        22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999998755

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.56  E-value=0.0013  Score=49.77  Aligned_cols=40  Identities=28%  Similarity=0.355  Sum_probs=32.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAE   59 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~   59 (209)
                      ++.-+++.|+||+|||.||..|+..+-     ..++...+++.+.
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            567899999999999999999998773     3556677777665

>PLN03025 replication factor C subunit; Provisional

Probab=97.56  E-value=7.9e-05  Score=58.31  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.+.+++.||||+||||+++.+++.+.
T Consensus        33 ~~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         33 NMPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            334578999999999999999999873

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.56  E-value=0.0001  Score=54.04  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      ++..++.|.|+||||||+++..++...   +  ..+++.+
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e   49 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE   49 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            356799999999999999999988654   2  5666664

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.56  E-value=0.0034  Score=53.99  Aligned_cols=28  Identities=14%  Similarity=0.262  Sum_probs=25.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++||+|+||||+|+.+++.+++.
T Consensus        40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         40 SHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            5678999999999999999999999864

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.55  E-value=0.0001  Score=57.59  Aligned_cols=30  Identities=23%  Similarity=0.421  Sum_probs=25.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      .|..+++.|+||+||||+++.+++.++..+
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~   71 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV   71 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence            366788899999999999999999887543

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.55  E-value=7.3e-05  Score=54.86  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444567899999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.55  E-value=7.3e-05  Score=53.24  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=23.7

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      ++.-..+.+++|.|++|||||||.+.+.
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            3444567899999999999999999985

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13768 GTPase; Provisional

Probab=97.55  E-value=8.8e-05  Score=56.06  Aligned_cols=25  Identities=36%  Similarity=0.561  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +++++|.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4689999999999999999998777

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.54  E-value=0.0048  Score=52.22  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..+++.|+||+||||+|+.|++.+++.
T Consensus        38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~   65 (624)
T PRK14959         38 APAYLFSGTRGVGKTTIARIFAKALNCE   65 (624)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence            6789999999999999999999999863

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.54  E-value=7.7e-05  Score=54.85  Aligned_cols=30  Identities=30%  Similarity=0.292  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.54  E-value=7.4e-05  Score=55.27  Aligned_cols=30  Identities=33%  Similarity=0.469  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999998654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.54  E-value=7.2e-05  Score=58.31  Aligned_cols=30  Identities=27%  Similarity=0.343  Sum_probs=25.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-+++|.||+||||||+.+.||--.
T Consensus        24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567789999999999999999998544

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.54  E-value=7.5e-05  Score=55.74  Aligned_cols=30  Identities=20%  Similarity=0.259  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567799999999999999999998755

>PRK09183 transposase/IS protein; Provisional

Probab=97.54  E-value=0.00017  Score=54.67  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLR   57 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~   57 (209)
                      .+..++|.||||+|||+|+..|+...   |  ..+++..++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~  143 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL  143 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH
Confidence            45578899999999999999997654   3  34555545443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.0001  Score=58.38  Aligned_cols=28  Identities=25%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++.++++.||+|+||||++..|+..+
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567799999999999999999999764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.54  E-value=7.7e-05  Score=55.13  Aligned_cols=30  Identities=27%  Similarity=0.361  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+..+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567799999999999999999998655

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=6.8e-05  Score=59.80  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+-.++.||||+||||+..++|..|++.+-+
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIyd  265 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYD  265 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcCCceEE
Confidence            3358999999999999999999999986654

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.53  E-value=7.9e-05  Score=54.84  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+..+
T Consensus        23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998755

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01394 radB RadB

Probab=97.53  E-value=0.00011  Score=54.19  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~   52 (209)
                      .++.++.|.|+|||||||+|..++...     +..+++.
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~   55 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT   55 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence            456799999999999999999998765     2446654

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.53  E-value=8.5e-05  Score=54.06  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=23.9

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.+......+++|+||+||||||+.+.++-
T Consensus        18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          18 NDIDMEKKNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             ceEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence            333334457999999999999999999974

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.53  E-value=8e-05  Score=55.09  Aligned_cols=30  Identities=27%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444577899999999999999999998765

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.53  E-value=8e-05  Score=55.92  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        23 LNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            444567899999999999999999998655

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.53  E-value=6.7e-05  Score=55.60  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=18.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.+.+|.||||+||||++..+...+
T Consensus        17 ~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   17 NGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             SE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCChHHHHHHHHHHh
Confidence            3479999999999998776666655

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.53  E-value=8.1e-05  Score=54.81  Aligned_cols=30  Identities=23%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+..+
T Consensus         8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177          8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            445567899999999999999999998654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.53  E-value=7.5e-05  Score=55.81  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            444567899999999999999999998654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.53  E-value=7.8e-05  Score=54.49  Aligned_cols=30  Identities=17%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567799999999999999999998755

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.52  E-value=8.2e-05  Score=54.68  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334567799999999999999999999765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.52  E-value=0.00011  Score=52.15  Aligned_cols=30  Identities=30%  Similarity=0.365  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+.-.++++||+||||||+.+.|....
T Consensus        23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             EeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence            445667789999999999999999998766

>COG2326 Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.012  Score=43.87  Aligned_cols=159  Identities=13%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ....+|++.|-.++||.-..+.+.+.+|   +.++..        ...+                +.+.-...+++.+..
T Consensus        72 ~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval--------~aPt----------------~~E~~qwY~qRy~~~  127 (270)
T COG2326          72 GQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL--------PAPT----------------DRERGQWYFQRYVAH  127 (270)
T ss_pred             CCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec--------CCCC----------------hHhhccHHHHHHHHh
Confidence            4566899999999999999999999997   333322        0000                011112234444444


Q ss_pred             cC--CCeEEEeCCCCC-------------HHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC-
Q 028388           96 SG--NDKFLIDGFPRN-------------EENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNR-NQGRED-  150 (209)
Q Consensus        96 ~~--~~~~i~dg~~~~-------------~~~~~~~~~~--------~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~-  150 (209)
                      .+  |..+|+|.+.++             .++...+.++        .....-+-+||.++.++-.+|...| ..+... 
T Consensus       128 lPa~GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP~K~W  207 (270)
T COG2326         128 LPAAGEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDPLKQW  207 (270)
T ss_pred             CCCCCeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCHHhcc
Confidence            33  888899854333             2222223222        2333445889999999999999999 222221 


Q ss_pred             -CcHHHHHH--HHHHHHhhchhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          151 -DNVETIRK--RFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       151 -~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                       -++.++..  +...|-.....++..-. ...+++++.++...-.=...+..++.
T Consensus       208 KlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~addKk~aRlnvi~~il~  262 (270)
T COG2326         208 KLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVPADDKKRARLNVIRHLLS  262 (270)
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEeCCcHHHHHHHHHHHHHH
Confidence             23444443  22334333333332222 22488888886444333444444433

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.52  E-value=7.5e-05  Score=54.84  Aligned_cols=26  Identities=23%  Similarity=0.176  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+ +++|.|++|||||||.+.|+..+
T Consensus        24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          24 GPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            346 89999999999999999998654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.52  E-value=8.2e-05  Score=55.58  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||++.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998755

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.52  E-value=8.6e-05  Score=53.84  Aligned_cols=31  Identities=19%  Similarity=0.389  Sum_probs=26.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         20 SITFLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444567799999999999999999998765

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.52  E-value=8.4e-05  Score=55.68  Aligned_cols=30  Identities=30%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||++.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          23 LDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.52  E-value=9.2e-05  Score=52.28  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||++.|+-.+
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          22 FEIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567799999999999999999998765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.51  E-value=8.9e-05  Score=54.49  Aligned_cols=30  Identities=43%  Similarity=0.443  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999998654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.51  E-value=0.00032  Score=58.46  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=25.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~   52 (209)
                      +++.+++|.|+||+||||++..++...    |  ..+++.
T Consensus        29 p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~   68 (509)
T PRK09302         29 PKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF   68 (509)
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence            356799999999999999999765422    3  456665

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=8.8e-05  Score=54.17  Aligned_cols=34  Identities=38%  Similarity=0.489  Sum_probs=27.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      +.....-+.+|.||.|||||||+..|+-+-++.+
T Consensus        25 L~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V   58 (251)
T COG0396          25 LTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV   58 (251)
T ss_pred             eeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceE
Confidence            4445677899999999999999999997775544

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.51  E-value=8.4e-05  Score=54.33  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567899999999999999999998755

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.51  E-value=8e-05  Score=54.78  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.+
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            344567899999999999999999998654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK08181 transposase; Validated

Probab=97.51  E-value=0.00021  Score=54.32  Aligned_cols=40  Identities=28%  Similarity=0.402  Sum_probs=31.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      +...++|.|+||+|||.|+..++...   |  ..+++..+++...
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l  149 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL  149 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence            44569999999999999999998755   3  5567777776655

>TIGR00763 lon ATP-dependent protease La

Probab=97.51  E-value=0.00012  Score=63.98  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ++..+++.||||+||||+|+.|++.++..++.
T Consensus       346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~  377 (775)
T TIGR00763       346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR  377 (775)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence            45689999999999999999999999866543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.51  E-value=8.8e-05  Score=55.48  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||++.|+-.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            344577899999999999999999998654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.51  E-value=8.9e-05  Score=55.31  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+..+
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998766

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.51  E-value=9.4e-05  Score=52.84  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+..+
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.51  E-value=9.1e-05  Score=55.00  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         28 FSLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            444567799999999999999999998654

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.50  E-value=0.00011  Score=54.57  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.|..++|.|++||||||++..|-..+.
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            45688999999999999999999877664

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.50  E-value=9e-05  Score=55.54  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||++.|+-.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          22 LSINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            444567899999999999999999998654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.50  E-value=8.3e-05  Score=54.99  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567899999999999999999998654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.50  E-value=0.00066  Score=49.15  Aligned_cols=126  Identities=17%  Similarity=0.257  Sum_probs=74.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC-----------CH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV-----------PS   82 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   82 (209)
                      +-|.++.|+|..|+|||-+++.++--+     ...++++....++++.+-...+..+.+++..+...           ..
T Consensus        26 P~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~  105 (235)
T COG2874          26 PVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGR  105 (235)
T ss_pred             ccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccCh
Confidence            457799999999999999999987322     36788888888888776555554444444433211           11


Q ss_pred             HHHHHHHHHH---HHhcCCCeEEEeCCC-----CCHHHHHH-HHHh-cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           83 EVTIKLLQKA---MEESGNDKFLIDGFP-----RNEENRAA-FEAV-TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        83 ~~~~~~i~~~---~~~~~~~~~i~dg~~-----~~~~~~~~-~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ......++..   ...-+...+|+|.+.     ........ +..+ ....-..+|++++.+...-+=...|
T Consensus       106 ~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~r  177 (235)
T COG2874         106 RSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTR  177 (235)
T ss_pred             HHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHHHH
Confidence            1223333333   333347888999742     11222222 2211 3444567999999887765555444

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.50  E-value=5.2e-05  Score=59.62  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ......|+|+|++||||||+++.|...++
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence            34567899999999999999999998775

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.50  E-value=9.4e-05  Score=54.95  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.++.|.|++|||||||++.|+-.+
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          21 LDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444567899999999999999999999766

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.50  E-value=0.00029  Score=52.27  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      ++.+++|.|+||+|||++|..++...   |  ..+++.+
T Consensus        15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e   53 (224)
T TIGR03880        15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE   53 (224)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            46789999999999999999877543   3  4456653

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.50  E-value=0.00011  Score=54.99  Aligned_cols=30  Identities=30%  Similarity=0.626  Sum_probs=26.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...+|.+|++.|..||||||+++.|-.++.
T Consensus        15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~   44 (366)
T KOG1532|consen   15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLH   44 (366)
T ss_pred             cccCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence            456789999999999999999999998883

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.49  E-value=9.6e-05  Score=48.80  Aligned_cols=20  Identities=30%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~   43 (209)
                      |+|.|.||+|||||.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.49  E-value=9.3e-05  Score=54.96  Aligned_cols=31  Identities=29%  Similarity=0.452  Sum_probs=26.3

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.|++|||||||.+.|+..+
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          25 SFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445577899999999999999999998655

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.49  E-value=8.9e-05  Score=53.65  Aligned_cols=29  Identities=28%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.-..+.++.|.|++|||||||.+.|+-.
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34456789999999999999999999853

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.49  E-value=0.0073  Score=43.46  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      |..+++.|++|+||||+++.+++.+..
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            568999999999999999999998854

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.49  E-value=0.00019  Score=53.76  Aligned_cols=38  Identities=26%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      ..+++.|+||+|||+|+..|+..+   +  ..+++..+++...
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l  142 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM  142 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH
Confidence            468999999999999999999988   2  4556777766554

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.49  E-value=9.6e-05  Score=54.93  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         31 LVVKRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            444577899999999999999999998765

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.49  E-value=9.7e-05  Score=50.89  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +....+.++.|.|++|||||||.+.|+..+
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            444567899999999999999999998765

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.48  E-value=0.0001  Score=52.66  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=26.2

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+.++.|.|++|||||||++.|+-.+
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3445567899999999999999999998765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.00013  Score=56.35  Aligned_cols=32  Identities=19%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .|+.|++.||.|+|||.+|+.||+.-|++++.
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK   80 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK   80 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            58899999999999999999999999888876

>PRK04296 thymidine kinase; Provisional

Probab=97.48  E-value=0.00012  Score=52.93  Aligned_cols=25  Identities=24%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+++++|+||+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999988877

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.48  E-value=0.00011  Score=52.34  Aligned_cols=30  Identities=33%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-...-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            334567799999999999999999998754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.48  E-value=0.0001  Score=54.98  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEI   60 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~~~~   60 (209)
                      .|+.|++.||||.|||.+|+.|+.+.+.+++.  .-.++-+++
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV  192 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV  192 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence            47889999999999999999999999877654  444554443

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.47  E-value=0.0001  Score=54.95  Aligned_cols=30  Identities=30%  Similarity=0.609  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus         7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770         7 LSLKRGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344567899999999999999999998754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.47  E-value=0.00011  Score=52.19  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            444567799999999999999999998765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.47  E-value=0.00011  Score=52.30  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=24.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-...-++.|.|++|||||||.+.|+-.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            33566799999999999999999998755

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13764 ATPase; Provisional

Probab=97.47  E-value=0.00011  Score=61.60  Aligned_cols=28  Identities=25%  Similarity=0.623  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+...|+|+|+|||||||+++.|++.++
T Consensus       255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        255 ERAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456799999999999999999998885

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.47  E-value=0.0001  Score=55.27  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||++.|+-.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567799999999999999999998765

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.46  E-value=8.7e-05  Score=53.71  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.-++|.|+||+|||++|+.|...|.
T Consensus        22 ~h~lLl~GppGtGKTmlA~~l~~lLP   47 (206)
T PF01078_consen   22 GHHLLLIGPPGTGKTMLARRLPSLLP   47 (206)
T ss_dssp             C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence            46799999999999999999998774

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.46  E-value=0.00011  Score=57.61  Aligned_cols=31  Identities=32%  Similarity=0.377  Sum_probs=25.2

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++...+.-++.+.||+||||||+.+.||--.
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444566789999999999999999999533

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.46  E-value=0.00036  Score=61.45  Aligned_cols=39  Identities=21%  Similarity=0.397  Sum_probs=29.8

Q ss_pred             CCCCe-EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHH
Q 028388           18 VKKPT-VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLL   56 (209)
Q Consensus        18 ~~~~~-~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~   56 (209)
                      +.+|. .+++.||||+|||.+|+.|++.+-     +..++..++.
T Consensus       592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~  636 (852)
T TIGR03345       592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQ  636 (852)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhh
Confidence            34565 689999999999999999999882     3455554444

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.46  E-value=0.00012  Score=54.21  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            333467799999999999999999998754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04163 Era Era subfamily

Probab=97.46  E-value=0.00012  Score=51.03  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|++.|++||||||+++.|...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999998653

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.46  E-value=0.00011  Score=54.69  Aligned_cols=30  Identities=33%  Similarity=0.426  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999999765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.46  E-value=0.00011  Score=55.06  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998655

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.46  E-value=0.00011  Score=55.08  Aligned_cols=29  Identities=41%  Similarity=0.582  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44456779999999999999999999875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.46  E-value=0.00011  Score=55.60  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||++.|+-.+
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.45  E-value=0.00078  Score=51.26  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++..+++.|++|+||||+++.|+..+
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l   99 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQF   99 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence            45799999999999999999998876

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.45  E-value=0.0058  Score=51.52  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +..++++|++|+||||+|+.|++.+++.
T Consensus        38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~   65 (563)
T PRK06647         38 ANAYIFSGPRGVGKTSSARAFARCLNCV   65 (563)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence            5679999999999999999999999763

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.45  E-value=0.00014  Score=50.76  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++++.|+|..+||||||...|.+++.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~   27 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLK   27 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHH
Confidence            47899999999999999999999884

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.45  E-value=0.00012  Score=54.58  Aligned_cols=30  Identities=37%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.45  E-value=0.00011  Score=55.60  Aligned_cols=30  Identities=30%  Similarity=0.412  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         22 LTLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.45  E-value=0.00012  Score=52.38  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-+++|.|++|||||||.+.|+-.+
T Consensus        20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998765

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00012  Score=55.28  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||++.|+-.+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344567899999999999999999998764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00013  Score=52.77  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=23.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      |.-.+..+-.+.||+||||||+.+.|- ++
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~LR~lN-Rm   56 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTLLRCLN-RM   56 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHHHHHHH-hh
Confidence            444567789999999999999999984 44

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00011  Score=55.54  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .-..+-+++|.|++|||||||.+.|+-.
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3456779999999999999999999864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.45  E-value=0.00012  Score=53.65  Aligned_cols=30  Identities=33%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            344567899999999999999999998654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00416 sms DNA repair protein RadA

Probab=97.44  E-value=0.00025  Score=58.04  Aligned_cols=35  Identities=20%  Similarity=0.356  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHhH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGD   54 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~   54 (209)
                      +..+++|.|.||+|||||+..++..+     +..|++..+
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE  132 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE  132 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence            45689999999999999999987655     245666544

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.44  E-value=0.00014  Score=57.26  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..-+++.|+||+|||++++.+++.++.+++.
T Consensus        43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~   73 (329)
T COG0714          43 GGHVLLEGPPGVGKTLLARALARALGLPFVR   73 (329)
T ss_pred             CCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            3458999999999999999999999865544

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.44  E-value=0.00013  Score=57.80  Aligned_cols=26  Identities=38%  Similarity=0.677  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..-+|+|+||+||||||+.+.|...+
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i  158 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIREL  158 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999999877

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.44  E-value=0.00012  Score=53.59  Aligned_cols=30  Identities=27%  Similarity=0.282  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.|++|||||||.+.|+..+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444577899999999999999999998754

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.44  E-value=0.00012  Score=54.55  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.|++|||||||.+.|+-.+
T Consensus         6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184         6 LTIQQGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.44  E-value=0.00012  Score=53.41  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=26.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          25 NLEVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            3445678899999999999999999998765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK06851 hypothetical protein; Provisional

Probab=97.44  E-value=0.00021  Score=56.52  Aligned_cols=31  Identities=32%  Similarity=0.577  Sum_probs=26.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++......+++|.|+||+||||+.+.|.+.+
T Consensus        24 ~~~~~~~~~~il~G~pGtGKStl~~~i~~~~   54 (367)
T PRK06851         24 SIIDGANRIFILKGGPGTGKSTLMKKIGEEF   54 (367)
T ss_pred             hhccccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3334556789999999999999999998877

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.44  E-value=0.00012  Score=52.51  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+-+++|.|++|||||||.+.|+..+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33466789999999999999999998765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10908 cell division protein FtsE; Provisional

Probab=97.44  E-value=0.00013  Score=54.10  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444577899999999999999999998655

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.44  E-value=0.00084  Score=59.26  Aligned_cols=37  Identities=19%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHH
Q 028388           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDL   55 (209)
Q Consensus        19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~   55 (209)
                      .+|. .+++.||||+|||++|+.|++.+.     +..++..++
T Consensus       595 ~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~  637 (857)
T PRK10865        595 NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEF  637 (857)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHh
Confidence            4453 688999999999999999998772     344555444

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.44  E-value=0.00013  Score=51.44  Aligned_cols=30  Identities=27%  Similarity=0.435  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444567899999999999999999998654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.44  E-value=0.00012  Score=54.60  Aligned_cols=30  Identities=27%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||++.|+-.+
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          23 LDIPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            444567899999999999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		3e-47
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		3e-45
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-44
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		3e-39
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		6e-38
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		5e-37
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		4e-34
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		3e-25
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		5e-24
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		5e-24
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		6e-24
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		6e-23
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		1e-21
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		2e-21
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		2e-21
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		2e-21
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		5e-21
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		5e-21
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		6e-21
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		2e-20
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		2e-20
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		2e-20
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		3e-20
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		4e-20
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		4e-20
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		8e-20
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		8e-20
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-19
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-17
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-17
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-17
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		1e-17
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		2e-17
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-17
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		3e-17
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		4e-17
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		4e-17
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		8e-17
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		1e-16
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		2e-15
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		1e-13
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		2e-13

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 127/184 (69%), Gaps = 10/184 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+T
Sbjct: 9   LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 86  IKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEME 138
           I LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC+ E   
Sbjct: 69  ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 139 RRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V EVFD V
Sbjct: 129 ERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEV 188
Query: 197 KAVF 200
             +F
Sbjct: 189 VQIF 192

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/178 (53%), Positives = 127/178 (71%), Gaps = 4/178 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+
Sbjct: 12  LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTV 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           KLL+ A++ +    FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R
Sbjct: 72  KLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKR 131
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++ V+ +F
Sbjct: 132 GESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 189

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/177 (48%), Positives = 125/177 (70%), Gaps = 7/177 (3%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEGKIVPSEVT 85
           LGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG+IVP E+T
Sbjct: 21  LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEIT 80
Query: 86  IKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           + LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E+ M  R+L
Sbjct: 81  LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLL 139
Query: 143 NRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197
            R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   + V +V+  V+
Sbjct: 140 ERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 196

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 116/175 (66%), Gaps = 7/175 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAM--EESGNDKFLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRILN 143
            +L+ AM  +   +  FLIDG+PR  +    FE   KI +P  +L+ D   E M +R+L 
Sbjct: 75  DMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER--KIGQPTLLLYVDAGPETMTKRLLK 132
Query: 144 RNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V +VF  V
Sbjct: 133 RGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G++VP E  +
Sbjct: 15  VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVL 74
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E M +R+L R
Sbjct: 75  DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPETMTQRLLKR 133
Query: 145 NQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF  V
Sbjct: 134 GETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQV 187

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 115/175 (65%), Gaps = 7/175 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LGGPGSGKGTQC  +V+ F + HLS+GDLLRAE++SGS  G  ++ M++ G++VP EV +
Sbjct: 35  LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEF-VLFFDCSEEEMERRILN 143
            LL++AM +    N  FLIDG+PR  +    FE   ++ P   V+ FD SEE M +R+L 
Sbjct: 95  ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK--EVCPCLCVINFDVSEEVMRKRLLK 152
Query: 144 R--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           R     R DDN ETI KRF+ F E + PV+++Y+ + KV  IDA+  V  +FD V
Sbjct: 153 RAETSNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 117/183 (63%), Gaps = 11/183 (6%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G +VPS + +
Sbjct: 18  IGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVL 77
Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKI-EPEFVLFFDCSEEEMERRIL- 142
           +LL++AM  S  D   FLIDG+PR  E +   E   +I +P+ V+  DCS + M  R+L 
Sbjct: 78  ELLKEAMVASLGDTRGFLIDGYPR--EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ 135
Query: 143 -NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF----DAVK 197
            +R+    DD  +TI KR + +  +S+PV+ YYE K ++ KI+A     +VF     A+ 
Sbjct: 136 MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195
Query: 198 AVF 200
           ++F
Sbjct: 196 SIF 198

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 27/199 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI-- 141
            L+++   + GN   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPKHGN--VIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123
Query: 142 --LNRNQG------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
             +N   G                  REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183
Query: 182 KIDAAKPVAEVFDAVKAVF 200
            IDA+KPV EV+  V  V 
Sbjct: 184 IIDASKPVEEVYRQVLEVI 202

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 9/179 (5%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVL---FFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +       +L     +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125
Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D      EV+  ++A  
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 101/201 (50%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 99/201 (49%), Gaps = 36/201 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG   +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65
Query: 87  KLL-QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN 145
            L+ ++  +E   + FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRR 124
Query: 146 -----------------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                                          R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184
Query: 177 KG-----KVRKIDAAKPVAEV 192
           +      K  K+D  KPVAEV
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEV 205

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 105/200 (52%), Gaps = 33/200 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEA-VTKI--EPEFVLFFDCSEEEMERR-- 140
            ++ + + +    K FL+DGFPR      A ++ +T +  + ++VL     +EE+ +R  
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125
Query: 141 -----------------------ILNRNQG----REDDNVETIRKRFKVFLESSLPVVQY 173
                                  I +++ G    R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVF 193
           Y  KG ++ ID  + + +VF
Sbjct: 186 YSQKGVLKDIDGQQDIKKVF 205

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 103/201 (51%), Gaps = 37/201 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN-----EENRAAFEAVTKIEPEFVLFFDCSEEEMERR 140
            L+ + ++     K F++DG+PRN     + N+   +  TK++   V +F+  +E +  R
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDG--VFYFNVPDEVLVNR 152
Query: 141 I----LNRNQGR-------------------------EDDNVETIRKRFKVFLESSLPVV 171
           I    +++  GR                         EDDN + ++KR  VF   + P++
Sbjct: 153 ISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLI 212
Query: 172 QYYEAKGKVRKIDAAKPVAEV 192
            YY+ K  +  +DA +P  ++
Sbjct: 213 SYYKNKNLLINLDATQPANDL 233

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 39/210 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEF------VLFFDCSEEEMER 139
            L+++  +     + F++DGFPR        E + KI  E       V++F+  + E+  
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQA---EGLAKILSEIGDSLTSVIYFEIDDSEIIE 127
Query: 140 RILNRNQ-----------------------------GREDDNVETIRKRFKVFLESSLPV 170
           RI  R                                R+DDN E ++ R  VF + + P+
Sbjct: 128 RISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPL 187
Query: 171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           V++YE  G +++++A  P  EV + +K + 
Sbjct: 188 VKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 37/209 (17%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVT-----KIEPEFVLFFDCSEEEMERR 140
            ++++ + +S  D  FL+DGFPR      A + +      KI  E VL     +EE+  R
Sbjct: 66  GIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKI--EHVLNIQVEKEELIAR 123
Query: 141 ILNRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVV 171
           +  R                                R DDN +T+  R +V +  + P++
Sbjct: 124 LTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLL 183
Query: 172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            +Y++K  +  I+  K + +VF  +  + 
Sbjct: 184 AFYDSKEVLVNINGQKDIKDVFKDLDVIL 212

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 12  MGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMT 71
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 72  RLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 131
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K +   + PV++YY  KG
Sbjct: 132 GSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKG 190

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L    ++      +L+DGFPR      A +   +I+    L   F+  ++ +  R ++ 
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHP 132
Query: 145 NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQYYEAKG 178
             G                         REDD  ET+ KR K + + + PV++YY+ KG
Sbjct: 133 ASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKG 191

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTI 65
Query: 87  KLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE-EMER-- 139
            ++++ + ++   + FL+DGFPR      A E +      + ++V+  D  ++  MER  
Sbjct: 66  GIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLT 125
Query: 140 -RILNRNQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R + RN G                         R DDN  T+  R +V ++   P+V +
Sbjct: 126 GRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           YE KG +R I+  + + +VF  ++ + 
Sbjct: 186 YEQKGYLRNINGEQDMEKVFADIRELL 212

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 33/208 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E+F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVV 81
Query: 87  KLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVT---KIEPEFVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + +    K + + V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R      G                         R DDN + ++ R + +   + P+++Y
Sbjct: 142 GRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEY 201
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           Y  +G    IDA++    VF ++ A F+
Sbjct: 202 YRKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             GR                         EDD  E +  R + + + + PV++ Y+++G 
Sbjct: 153 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGV 212
Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           + +    +   +++  V  +F+ K
Sbjct: 213 LHQFSGTE-TNKIWPYVYTLFSNK 235

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 6   LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 65
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 66  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 124
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            + +GR DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF
Sbjct: 125 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 172

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS++T 
Sbjct: 26  LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTN 85
Query: 87  KLLQKAMEE-SGNDKFLIDGFPRN-EENRAAFEAVTK--IEPEFVLFFDCSEEEMERRIL 142
           +L+   +      + F++DG+PR+ E+ +A  E + +   + + VL F  SEE +  R+ 
Sbjct: 86  ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL- 144
Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            + +GR DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF
Sbjct: 145 -KGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVF 192

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+V  E+ +
Sbjct: 22  LGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVL 81
Query: 87  KLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPE---FVLFFDCSEEEMERRIL 142
           +L++K +E     + FL+DGFPR        + + +   E    V+ F   +  + RRI 
Sbjct: 82  ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRIT 141
Query: 143 NR----NQG-------------------------REDDNVETIRKRFKVFLESSLPVVQY 173
            R      G                         R DDN + ++ R + +   + P+V+Y
Sbjct: 142 GRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEY 201
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT 201
           Y  +G    IDA++    VF ++ A F+
Sbjct: 202 YSKRGIHSAIDASQTPDVVFASILAAFS 229

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++VP E+ + 
Sbjct: 12  GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 88  LLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
           ++++ + +  +  + +L+DG+PR+     A E + +I P+  +  D  +E +  R++ R
Sbjct: 72  MVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPDELLVERVVGR 129

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 28/204 (13%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 11  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 70
Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF--FDCSEEEMERRILNR 144
           +L+   +E      +L+DGFPR      A + + +++    L   F+  ++ + RR ++ 
Sbjct: 71  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 130
Query: 145 NQGR-------------------------EDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             GR                         EDD  E +  R + + + + PV++ Y+++G 
Sbjct: 131 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGV 190
Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           + +    +   +++  V  +F+ K
Sbjct: 191 LHQFSGTE-TNKIWPYVYTLFSNK 213

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +S  ++ FL+DGFPR   +             P ++V+     +EE+  R+ 
Sbjct: 66  GIVRERLSKSDCERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y++K  +  ++  + + +VF  VK + 
Sbjct: 186 YDSKEVLVNVNGQQDIQDVFADVKVIL 212

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQQDIQDVYADVKDLL 212

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ KG +  ++  + + +V+  +K + 
Sbjct: 186 YDEKGYLVNVNGQQDIQDVYADLKVLL 212

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLVNVNGQRDIQDVYADVKDLL 212

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +    +  + F++DGFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++   P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQIQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +    +  + F++DGFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQ-GREDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +       R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD LRA +K+G+  G   +    EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSLII 73
Query: 87  KLLQKAMEESG-NDKFLIDGFPRN-EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR 144
            L+++ ++E+   + +L DGFPR   +  A  EA   I  ++VL  D    E+  R   R
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAXKEAGVAI--DYVLEIDVPFSEIIERXSGR 131
Query: 145 NQG-----------------------------REDDNVETIRKRFKVFLESSLPVVQYY 174
                                           R+DD  ET++KR  V+   + P++ YY
Sbjct: 132 RTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 33/207 (15%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGT    IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65
Query: 87  KLLQKAMEESGNDK-FLIDGFPRN--EENRAAFEAVTKIEP-EFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR   +            +P ++V+  +  ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLT 125
Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDF 185
Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG +  ++  + + +V+  VK + 
Sbjct: 186 YSEKGYLANVNGQRDIQDVYADVKDLL 212

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 98/201 (48%), Gaps = 34/201 (16%)
Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69
Query: 87  KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV-TKIEPEFVL--- 128
            +++  +    +  + F++ GFPR             E+     +A+  K++ E ++   
Sbjct: 70  NMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129
Query: 129 ---------------FFDCSEEEMERRILNRNQGR-EDDNVETIRKRFKVFLESSLPVVQ 172
                           F+  +E+M+  +      +  DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVD 189
Query: 173 YYEAKGKVRKIDAAKPVAEVF 193
           +Y+  G    +DA++P A V+
Sbjct: 190 FYKKTGIWAGVDASQPPATVW 210

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126
Query: 145 NQGREDDNVETIRKRFKVFLESSLP 169
              + + N         +F+E+  P
Sbjct: 127 RICKNNPNHPN-----NIFIEAIKP 146

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29  GP-GSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           GP GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI 
Sbjct: 7   GPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIP 66
Query: 88  LLQKAMEESGNDKFLIDGFPRNE-ENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNR 144
           ++ + +E  G D +L+DGFPRN  + +  FEA+ +  ++  FV+      E  + RI+ R
Sbjct: 67  MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	5e-98
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	5e-95
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	8e-95
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	5e-94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	2e-92
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	3e-54
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	3e-53
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	7e-53
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	2e-52
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	2e-52
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	1e-51
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	1e-51
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	4e-51
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	5e-51
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	5e-51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	9e-51
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	2e-50
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	1e-49
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	2e-48
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	3e-44
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	2e-25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-22
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	5e-11
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	6e-11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-10
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	3e-09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	6e-07
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	2e-06
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	6e-06
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	7e-06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	9e-06
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	6e-05
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	7e-05
2ccj_A	205	DTMP kinase, thymidylate kinase; transferase, nucl	7e-05
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	7e-05
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	1e-04
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	2e-04
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	2e-04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	3e-04
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	3e-04
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	5e-04

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  281 bits (722), Expect = 5e-98
 Identities = 101/186 (54%), Positives = 132/186 (70%), Gaps = 4/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 183

Query: 195 AVKAVF 200
            V+ +F
Sbjct: 184 DVENLF 189

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  274 bits (703), Expect = 5e-95
 Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 5/187 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           ++K  ++F++GGPGSGKGTQC  +VE +G+THLS G+LLR E+ S SE   +I+++++ G
Sbjct: 9   LRKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERG 68

Query: 78  KIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
            +VPS + ++LL++AM  S  D   FLIDG+PR  +    F      +P+ V+  DCS +
Sbjct: 69  DLVPSGIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIG-DPQLVICMDCSAD 127

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M  R+L    +    DD  +TI KR + +  +S+PV+ YYE K ++ KI+A     +VF
Sbjct: 128 TMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVF 187

Query: 194 DAVKAVF 200
             +    
Sbjct: 188 LQLCTAI 194

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  274 bits (702), Expect = 8e-95
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 5/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLR+E+ SGS  G  +  ++++G+
Sbjct: 7   KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQ 66

Query: 79  IVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
           +VP E  + +L+ AM    N    FLIDG+PR  +    FE     +P  +L+ D   E 
Sbjct: 67  LVPLETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIG-QPTLLLYVDAGPET 125

Query: 137 MERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R +  GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V  VF 
Sbjct: 126 MTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFS 185

Query: 195 AVKAVF 200
            V    
Sbjct: 186 QVCTHL 191

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  272 bits (697), Expect = 5e-94
 Identities = 90/203 (44%), Positives = 133/203 (65%), Gaps = 7/203 (3%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSE 65
           T    +    +  + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+
Sbjct: 1   TAATTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ 60

Query: 66  NGTMIQNMIKEGKIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKI 122
            G +I+N IKEG+IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE     
Sbjct: 61  YGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV- 119

Query: 123 EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV 180
           E +F+LFFDC E+ M  R+L R +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV
Sbjct: 120 ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKV 179

Query: 181 RKIDAAKPVAEVFDAVKAVFTPK 203
            ++   + V +V+  V+      
Sbjct: 180 VRVRCDRSVEDVYKDVQDAIRDS 202

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  267 bits (685), Expect = 2e-92
 Identities = 102/191 (53%), Positives = 133/191 (69%), Gaps = 10/191 (5%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGK 78
           KP VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGK
Sbjct: 2   KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGK 61

Query: 79  IVPSEVTIKLLQKAMEE-----SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFD 131
           IVP E+TI LL++ M++     +  +KFLIDGFPRN++N   +      K +  FVLFFD
Sbjct: 62  IVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFD 121

Query: 132 CSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPV 189
           C+ E    R L R +  GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V
Sbjct: 122 CNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSV 181

Query: 190 AEVFDAVKAVF 200
            EVFD V  +F
Sbjct: 182 DEVFDEVVQIF 192

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  170 bits (433), Expect = 3e-54
 Identities = 61/178 (34%), Positives = 105/178 (58%), Gaps = 9/178 (5%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ + + +  G+  LS GD+LR  +  G+  G  ++ +++ G +VP ++ +
Sbjct: 10  LGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLIL 69

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILN 143
           +L+++ + E    + + DGFPR      A + +   T      V+  +  EEE+ RRIL 
Sbjct: 70  ELIREELAE----RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILR 125

Query: 144 RN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R   +GR DDN ET+R+R +V+ E + P+V YYEA+G ++++D      EV+  ++A 
Sbjct: 126 RAELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAA 183

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  170 bits (432), Expect = 3e-53
 Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 34/214 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGT C  I ++FG  HLS+G  LR  IK+ +E G M +  I++  +VP  V  
Sbjct: 33  LGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVIT 92

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L+   +E      +L+DGFPR      A + + ++  + V+  +   E ++ R+  R  
Sbjct: 93  RLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEV--DLVISLNIPFETLKDRLSRRWI 150

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           +EDD  E +  R + + + + PV++ Y+++
Sbjct: 151 HPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSR 210

Query: 178 GKVRKIDAAKPV---AEVFDAVKAVFTPKDEKAA 208
           G + +    +       V+       TP   K A
Sbjct: 211 GVLHQFSGTETNKIWPYVYTLFSNKITPIQSKEA 244

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  168 bits (428), Expect = 7e-53
 Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 34/215 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGT  + I  HF   HLS+GDLLR  +  G+E G + +  I +GK++P +V  
Sbjct: 13  MGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMT 72

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-- 144
           +L    ++      +L+DGFPR      A +   +I  + V+  +   E +++R+  R  
Sbjct: 73  RLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQRLTARWI 130

Query: 145 ----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEAK 177
                             G           REDD  ET+ KR K + + + PV++YY+ K
Sbjct: 131 HPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKK 190

Query: 178 GKVRKIDAAKPV---AEVFDAVKAVFTPKDEKAAA 209
           G +      +       V+  ++     + +KA+ 
Sbjct: 191 GVLETFSGTETNKIWPYVYAFLQTKVPQRSQKASV 225

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  166 bits (423), Expect = 2e-52
 Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 27/199 (13%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   + +  G+ H+S GD+LR  ++ G+  G   +  ++ G++VP ++ I
Sbjct: 6   LGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            L+++   +  +   + DGFPR  +   A + + +   ++ + VL F+  +E +  R+  
Sbjct: 66  ALIEEVFPK--HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSG 123

Query: 144 RN----------------------QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR 181
           R                         REDD  E I+KR +V+ E + P+++YY+ KG +R
Sbjct: 124 RRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILR 183

Query: 182 KIDAAKPVAEVFDAVKAVF 200
            IDA+KPV EV+  V  V 
Sbjct: 184 IIDASKPVEEVYRQVLEVI 202

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  166 bits (423), Expect = 2e-52
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 9/203 (4%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
           MG+        +          V+  LG PG+GKGTQ   + E  G   +S G+L R  I
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMRVLL-LGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNI 59

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV 119
           + G++ G   +  +  G +VPS++T +L+   +        F++DG+PR+ E   A   +
Sbjct: 60  EEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM 119

Query: 120 ---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                 + + VL F  SEE +  R+  R  GR DD  + I  R KV+ + + P+++YY  
Sbjct: 120 LERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYY-- 175

Query: 177 KGKVRKIDAAKPVAEVFDAVKAV 199
           + +++ +DA   + EVF      
Sbjct: 176 RDQLKTVDAVGTMDEVFARALRA 198

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  165 bits (419), Expect = 1e-51
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PGSGKGTQC  I + +G  HLS GD+LR  IK+G++ G   +++I+ G  V  E+ +
Sbjct: 11  IGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVL 70

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+++  +       F++DGFPR          +          V++F+  + E+  RI 
Sbjct: 71  GLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERIS 130

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                    G           R+DDN E ++ R  VF + + P+V++
Sbjct: 131 GRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKF 190

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           YE  G +++++A  P  EV + +K + 
Sbjct: 191 YEDLGILKRVNAKLPPKEVTEQIKKIL 217

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  165 bits (421), Expect = 1e-51
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PGSGKGTQ  N+ +   Y HLS GDLLR   +  +E G  I+N+I EGK+V  ++ +
Sbjct: 35  LGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVL 94

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            L+ + ++     K F++DG+PRN +       + +    + + V +F+  +E +  RI 
Sbjct: 95  SLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRIS 154

Query: 143 NR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQY 173
            R                                REDDN + ++KR  VF   + P++ Y
Sbjct: 155 GRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISY 214

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ K  +  +DA +P  ++   +    
Sbjct: 215 YKNKNLLINLDATQPANDLEKKISQHI 241

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  163 bits (415), Expect = 4e-51
 Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   I+E +   H+S GD+ RA IK+G+E G   ++ + +G +VP EVTI
Sbjct: 6   MGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++ + + +    K FL+DGFPR      A +++      + ++VL     +EE+ +R+ 
Sbjct: 66  GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DD  ET++ R  V ++ + P++ +
Sbjct: 126 GRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDF 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y  KG ++ ID  + + +VF  +  + 
Sbjct: 186 YSQKGVLKDIDGQQDIKKVFVDINDLL 212

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  163 bits (415), Expect = 5e-51
 Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 33/207 (15%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ   IVE +G  H+S GD+ RA +K  +  G   ++ I +G++VP EVTI
Sbjct: 6   MGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRIL 142
            ++++ + +   ++ FL+DGFPR      A E + +      ++V+     ++ +  R+ 
Sbjct: 66  GIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLT 125

Query: 143 NRN-----------------------------QGREDDNVETIRKRFKVFLESSLPVVQY 173
            R                                R DDN ET+ KR +V ++ + P++ +
Sbjct: 126 GRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDF 185

Query: 174 YEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           Y+ KG +  ++  + + +V+  +K + 
Sbjct: 186 YDEKGYLVNVNGQQDIQDVYADLKVLL 212

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  163 bits (415), Expect = 5e-51
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 34/208 (16%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           +G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  ++ +
Sbjct: 10  IGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMV 69

Query: 87  KLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRI 141
            +++  +  +   K  F++DGFPR        + + K      E  +     +E +  RI
Sbjct: 70  NMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI 129

Query: 142 LNR------------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQ 172
             R                                R DDN + ++KR   +   + P+V 
Sbjct: 130 TGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVD 189

Query: 173 YYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           +Y+  G    +DA++P A V+  +    
Sbjct: 190 FYKKTGIWAGVDASQPPATVWADILNKL 217

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  162 bits (413), Expect = 9e-51
 Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 33/223 (14%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
            +  P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++
Sbjct: 1   ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60

Query: 77  GKIVPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           G++VP E+ + ++++ + +    +  +L+DG+PR+     A E + +I P+  +  D  +
Sbjct: 61  GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL-EIRPDTFILLDVPD 119

Query: 135 EEMERRILNRN-------------------------QGREDDNVETIRKRFKVFLESSLP 169
           E +  R++ R                            R DD  E ++ R + + ++   
Sbjct: 120 ELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIES 179

Query: 170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF---TPKDEKAAA 209
           ++  Y  +  + K+     V  VF  +  +      K  +  +
Sbjct: 180 LLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMVS 220

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  162 bits (412), Expect = 2e-50
 Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 33/225 (14%)

Query: 9   VKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT 68
           V  A+      K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G 
Sbjct: 4   VPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGK 63

Query: 69  MIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEP 124
            ++  +  GK+V  E+ ++L++K +E       FL+DGFPR        + + +    + 
Sbjct: 64  KLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKL 123

Query: 125 EFVLFFDCSEEEMERRILNR------------------NQG-----------REDDNVET 155
           + V+ F   +  + RRI  R                                R DDN + 
Sbjct: 124 DSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKA 183

Query: 156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
           ++ R + +   + P+V+YY  +G    IDA++    VF ++ A F
Sbjct: 184 LKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 228

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  159 bits (405), Expect = 1e-49
 Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 36/208 (17%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E+ I
Sbjct: 6   LGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVI 65

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ + +      FL+DGFPR      A +    I  ++VL FD  +E +  RI+ R 
Sbjct: 66  ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEA-GINVDYVLEFDVPDELIVDRIVGRR 124

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET+RKR   + + + P++ YY  
Sbjct: 125 VHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSK 184

Query: 177 KG-----KVRKIDAAKPVAEVFDAVKAV 199
           +      K  K+D  KPVAEV   ++ +
Sbjct: 185 EAEAGNTKYAKVDGTKPVAEVRADLEKI 212

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  157 bits (398), Expect = 2e-48
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 42/214 (19%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
           LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I
Sbjct: 14  LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLII 73

Query: 87  KLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR- 144
            L+++ ++E+     +L DGFPR      A +    +  ++VL  D    E+  R+  R 
Sbjct: 74  GLVKERLKEADCANGYLFDGFPRTIAQADAMKEA-GVAIDYVLEIDVPFSEIIERMSGRR 132

Query: 145 -----------------NQG-----------REDDNVETIRKRFKVFLESSLPVVQYYEA 176
                             +G           R+DD  ET++KR  V+   + P++ YY  
Sbjct: 133 THPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGD 192

Query: 177 KG-----------KVRKIDAAKPVAEVFDAVKAV 199
                          RKI     V E+   V+  
Sbjct: 193 WARRGAENGLKAPAYRKISGLGAVEEIRARVRRA 226

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  146 bits (370), Expect = 3e-44
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 43/216 (19%)

Query: 27  LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI 86
            G  GSGKGTQ   + + +   H+ +G + R  I  G+E G   +  I  G +VP ++TI
Sbjct: 6   FGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITI 65

Query: 87  KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEEEMERRILN 143
            ++ + +E  G D +L+DGFPRN           +   ++  FV+      E  + RI+ 
Sbjct: 66  PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMG 125

Query: 144 RN-------------------------------QGREDDNVE-TIRKRFKVF---LESSL 168
           R                                  R DD  E  I KR  ++   ++ +L
Sbjct: 126 RRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTL 185

Query: 169 PVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKAV 199
               YY+           ++D    +  + D + A 
Sbjct: 186 AAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQ 221

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 96.5 bits (240), Expect = 2e-25
 Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVP 81
           V+ + G PGSGK    A +++  G   +   D++R      ++ G  + +  K   +I  
Sbjct: 3   VILITGMPGSGKSEF-AKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
             V  +L  + +  S +D  + DG  R+      F+     +  +++      +   +R+
Sbjct: 62  DGVVARLCVEELGTSNHDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRM 119

Query: 142 LNRNQGREDDNVETIRKR 159
           + R +  +   +  + +R
Sbjct: 120 IERLRSDDSKEISELIRR 137

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 89.2 bits (221), Expect = 2e-22
 Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 11/155 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G           +   +   
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD---ELLALTWK 60

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEF---VLFFDCSEEEMER 139
            +T          + ND  ++D     +E  A  + V     +     +    + EE+ R
Sbjct: 61  NITDLT--VNFLLAQND-VVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY 174
           R   R   +++   E   +  + F    +    +Y
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFESKGIDERYFY 150

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 19/133 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E            +   +  I+  +
Sbjct: 14  ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLY------DGYDEEYDCPILDED 67

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
             +  L   M E G    ++D    +      F  V      FVL        +  R+  
Sbjct: 68  RVVDELDNQMREGG---VIVDYHGCDFFPERWFHIV------FVL--RTDTNVLYERLET 116

Query: 144 RNQGRE--DDNVE 154
           R    +   DN++
Sbjct: 117 RGYNEKKLTDNIQ 129

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 24/181 (13%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E        + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQGREDDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           E+ +    RN  R    V  + +R  +K      L +  Y             KP A +F
Sbjct: 118 ELVK----RNSKRGTKAVPIDVLRSMYKSM-REYLGLPVYNG--------TPGKPKAVIF 164

Query: 194 D 194
           D
Sbjct: 165 D 165

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 26/184 (14%), Positives = 52/184 (28%), Gaps = 14/184 (7%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           + P ++ V G P +GK T    +        LS  D  +  +  G           +E  
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLPLLS-KDAFKEVMFDGLGWS------DREWS 55

Query: 79  IVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCS 133
                  I +L         SG    +++   R + +    + +          +    S
Sbjct: 56  RRVGATAIMMLYHTAATILQSGQS-LIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS 114

Query: 134 EEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP-VVQYYEAKGKVRKIDAAKPVAEV 192
            + +  RIL+R             +             +      G +  +D   P    
Sbjct: 115 GDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQID 174

Query: 193 FDAV 196
            +A+
Sbjct: 175 MNAI 178

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 12/147 (8%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     ++        Y  +S G ++    K  +        M K  
Sbjct: 5   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-RDQMRKMD 63

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLFFDC 132
                 +     +K  E +      +D       P+          + ++ P+ ++  + 
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 133 SEEE-MERRILNRNQGREDDNVETIRK 158
           + +E + RR+ +  + R+ D   TI +
Sbjct: 124 TGDEILMRRMSDETRVRDLDTASTIEQ 150

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 21  PTVVFVLGGPGSGKGTQCANIV-EHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
             ++  +G PGSGK T     + ++ G+ +++  D  R  I +  E         KEG +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60

Query: 80  VPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAVTK---IEPEFVLFFDCSEE 135
             + +     +  +    + K  +I     N E R A+E   K    + E    FD    
Sbjct: 61  --TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHK-VFDVPWT 117

Query: 136 EMERRILNRNQ 146
           E+ +R   R  
Sbjct: 118 ELVKRNSKRGT 128

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 10/173 (5%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           K+P  + + G  G+GK T      + F      +                    ++ ++ 
Sbjct: 30  KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEY 89

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFV--LFFDCSE 134
            K    ++   L+ K      N   LI+G  R  +       + K +   V         
Sbjct: 90  TKDFAGKMVESLVTKLSSLGYN--LLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP 147

Query: 135 EEMERRILNRNQGREDDNV----ETIRKRFKVFLESSLPVVQYYEAKGKVRKI 183
           E      L R +     N      T ++     +   +   +  E      +I
Sbjct: 148 ELSYLSTLIRYEELYIINPNQARATPKEHHDFIVNHLVDNTRKLEELAIFERI 200

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 22/204 (10%)

Query: 7   TPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSEN 66
           +   +++A    + P  + V+G  GSGK +    I E  GY  +    L   E       
Sbjct: 4   SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPE------- 56

Query: 67  GTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPE 125
                  + EG  +  +     L    E  +  +  ++         R            
Sbjct: 57  ---NIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLA 113

Query: 126 FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDA 185
           FV F   SE  +  R+ +R       ++          L++ L  ++    + +   +D 
Sbjct: 114 FV-FLHGSESVLAERMHHRTGHFMPSSL----------LQTQLETLEDPRGEVRTVAVDV 162

Query: 186 AKPVAEVFDAVKAVFTPKDEKAAA 209
           A+P+AE+     A      E    
Sbjct: 163 AQPLAEIVREALAGLARLAENLYF 186

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 23  VVFVLGGPGSGKGTQCANIVE-----HFGYTHLSAGDLLRAEIKSG---SENGTMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A         +   M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDG-----FPRNEENRAAFEAVTKIEPEFVLF 129
           ++ K +  +    + ++A    G     ID       P           +T+I P  +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEE-MERRILNRNQGREDDNVETIRKR 159
            +   +  + R+  +  + R D + E++   
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILE 152

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 27/145 (18%), Positives = 47/145 (32%), Gaps = 20/145 (13%)

Query: 15  TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
           ++   K   + + G PG+GK +    I     G+ HL  G L++       EN    +  
Sbjct: 4   SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK-------ENHFYTEYD 56

Query: 74  IKEGKIVPSEVTIKLLQKAMEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +    +  E     L   ME         ++D            E   +     V+   
Sbjct: 57  TELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSS--------ELFPERWFHMVVVLH 108

Query: 132 CSEEEMERRILNRNQGRE--DDNVE 154
            S E +  R+  R        +N+E
Sbjct: 109 TSTEVLFERLTKRQYSEAKRAENME 133

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 12/156 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + G PGSGK T    +    G    H    D L   IK G  +  + Q+  +  
Sbjct: 8   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQSHQQNR 66

Query: 78  KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
            I+        +     + G    ++DG  R +   A       +     +    +  E 
Sbjct: 67  MIMQ---IAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLH---YIVLRTTAAEA 119

Query: 138 ERRILNRNQGREDD--NVETIRKRFKVFLESSLPVV 171
             R L+R      D   V  +  +F         V+
Sbjct: 120 IERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVL 155

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Length = 229

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 63/216 (29%)

Query: 28  GGPGSGKGTQCANIVEHF--GYTHL--------SAGDLLRAEIKSGSENGTM-------- 69
           G  GSGK T    +       Y  +          G+ +R  +  G++            
Sbjct: 33  GPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAA 92

Query: 70  -----IQNMIK----EGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFPRNE 110
                +   +     EGK+V                  D++ ID          G    E
Sbjct: 93  SRREHLVLKVIPALKEGKVVLC----------------DRY-IDSSLAYQGYARGIGVEE 135

Query: 111 ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGR---EDDNVETIRKRFKVFLESS 167
                  A+  + P+  ++ + S E    RI+  ++ +   + ++++   K  + + E  
Sbjct: 136 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEII 195

Query: 168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203
                 +    + + ++A +P+  V +         
Sbjct: 196 ------HNESQRFKSVNADQPLENVVEDTYQTIIKY 225

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAEIKSGSENGTMIQNM 73
               ++ + G PG GK T   N+ +           L   DL+R       E        
Sbjct: 2   GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG-SDLIRESFPVWKEK------- 53

Query: 74  IKEGKIVPSEVTIKLLQKAMEESGNDKFLI--DGFPRNEENRAAFEAVTKIEPEF-VLFF 130
                    E   K   + ++ +  + ++I  D    N   R       K    + +++ 
Sbjct: 54  -------YEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYL 106

Query: 131 DCSEEEMERRILNRNQGREDDNVETIRKRF 160
             S + + RR + R +   ++ ++ + ++F
Sbjct: 107 KASLDVLIRRNIERGEKIPNEVIKKMYEKF 136

>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 63/216 (29%)

Query: 28  GGPGSGKGTQCANIVEHF--GYTHL--------SAGDLLRAEIKSGSENGTM-------- 69
           G  GSGK T    +       Y  +          G+ +R  +  G++            
Sbjct: 9   GPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAA 68

Query: 70  -----IQNMIK----EGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFPRNE 110
                +   +     EGK+V                  D++ ID          G    E
Sbjct: 69  SRREHLVLKVIPALKEGKVVLC----------------DRY-IDSSLAYQGYARGIGVEE 111

Query: 111 ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGR---EDDNVETIRKRFKVFLESS 167
                  A+  + P+  ++ + S E    RI+  ++ +   + ++++   K  + + E  
Sbjct: 112 VRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEII 171

Query: 168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK 203
                 +    + + ++A +P+  V +         
Sbjct: 172 ------HNESQRFKSVNADQPLENVVEDTYQTIIKY 201

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216

 Score = 41.1 bits (97), Expect = 7e-05
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 34/197 (17%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G   +GK TQC  + +           LL+   +  +  G +I   + +     S+  I 
Sbjct: 12  GLDRTGKTTQCNILYKKLQ----PNCKLLKFP-ERSTRIGGLINEYLTDDSFQLSDQAIH 66

Query: 88  LL------------QKAMEESGN---DKFLID---------GFPRNEENRAAFEAVTKIE 123
           LL            +K + E  N   D++ +          G    + +      V  ++
Sbjct: 67  LLFSANRWEIVDKIKKDLLEGKNIVMDRY-VYSGVAYSAAKGTNGMDLDWCLQPDVGLLK 125

Query: 124 PEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKI 183
           P+  LF    + +           R  + V+   K  + F++  L   +  +    +  +
Sbjct: 126 PDLTLFLSTQDVDNNAEKSGFGDERY-ETVKFQEKVKQTFMK--LLDKEIRKGDESITIV 182

Query: 184 DAA-KPVAEVFDAVKAV 199
           D   K + EV   +  +
Sbjct: 183 DVTNKGIQEVEALIWQI 199

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSE-NGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E      +    D  + +  +  E      ++++K
Sbjct: 30  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 89

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE--PEFVLFFDCS 133
                 + +T  ++ +  ++  N   +I+G  R  +       + + +     +      
Sbjct: 90  HVTPYSNRMTEAIISRLSDQGYN--LVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP 147

Query: 134 EEEMERRILNRNQGREDDNVETIRK 158
           +       + R +    D+  T R 
Sbjct: 148 KINSYLGTIERYETMYADDPMTARA 172

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 9/133 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
              ++ + GG  +GK      +       +      D L   +    ++         +G
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG-VDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 78  KIVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD 131
            +        L         AM  +G    + D F      +  + +         +   
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 132 CSEEEMERRILNR 144
           C     E R   R
Sbjct: 121 CDGAVAEGRETAR 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQG----REDDNVETIRKRF 160
           F   E      + ++  E  FV  FDC + ++M + IL++ +        D V    + F
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 161 KVFLESSLPVVQYY 174
              L     +VQ +
Sbjct: 69  WTLLSKQEEMVQKF 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 51/194 (26%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENG----TMIQNMIKEGK 78
           V + G  GSGK             T + A D+  +  ++   +       +         
Sbjct: 153 VLIDGVLGSGK-------------TWV-ALDVCLSYKVQCKMDFKIFWLNL-------KN 191

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
               E  +++LQK          L+     N  +R+   +  K+          S +   
Sbjct: 192 CNSPETVLEMLQK----------LLYQIDPNWTSRSDHSSNIKLRIH-------SIQAEL 234

Query: 139 RRILNRNQGRED----DNVETIRKRFKVF-LESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
           RR+L             NV+   K +  F L   + +   +  K     + AA       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISL 291

Query: 194 DAVKAVFTPKDEKA 207
           D      TP + K+
Sbjct: 292 DHHSMTLTPDEVKS 305

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 31/220 (14%), Positives = 49/220 (22%), Gaps = 58/220 (26%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMI---KEGKIVP 81
           G  G+GK T    +   F   G +       L    + G      I       + G +  
Sbjct: 7   GVDGAGKRTLVEKLSGAFRAAGRSVA----TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61

Query: 82  SEVTIKLL------------QKAMEE-----------------SGNDKFLIDGFPRNEEN 112
           S   +  L            Q                      +        G       
Sbjct: 62  SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQ 121

Query: 113 RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ---GREDDNVET-------IRKRFKV 162
           R  F  +   +P++ +    S E    R   R Q   GR  DN E            +  
Sbjct: 122 RIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAE 181

Query: 163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP 202
                          G+   + A      +   +     P
Sbjct: 182 LAAQGWG--------GRWLVVGADVDPGRLAATLAPPDVP 213

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 68/216 (31%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL---------SAGDLLRAEIKSGSENGTM------ 69
           G  G+GK T    +VE     G  H+            + LRA +K       +      
Sbjct: 34  GLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITEL 93

Query: 70  --------------IQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----------G 105
                         I+  +  G+ V                  D+               
Sbjct: 94  LLVYAARVQLVENVIKPALARGEWVVG----------------DRH-DMSSQAYQGGGRQ 136

Query: 106 FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-R-EDDNVETIRKRFKVF 163
              +        A+   +P+  L+ D   +    R   R +  R E  ++    +  + +
Sbjct: 137 IAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERY 196

Query: 164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           LE +        +   V  IDAA+ + +V   ++  
Sbjct: 197 LELA-------NSDDSVVMIDAAQSIEQVTADIRRA 225

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Length = 195

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 46/204 (22%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP--- 81
           G  GSGK TQ   + E+    GY       L R E   G++ G +++ ++   ++     
Sbjct: 7   GIDGSGKTTQAKKLYEYLKQKGYFVS----LYR-EP-GGTKVGEVLREILLTEELDERTE 60

Query: 82  --------SEVTIKLLQKAMEESGNDKFLID--------------GFPRNEENRAAFEAV 119
                   S++  + +   ++   +   ++D              G            A 
Sbjct: 61  LLLFEASRSKLIEEKIIPDLKR--DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFAT 118

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGK 179
             ++P+  L  D   +   RR+  +N     +N E + K  K FLE +       + +  
Sbjct: 119 RGVKPDITLLLDIPVDIALRRLKEKN---RFENKEFLEKVRKGFLELA-------KEEEN 168

Query: 180 VRKIDAAKPVAEVFDAVKAVFTPK 203
           V  IDA+    EVF  +    +  
Sbjct: 169 VVVIDASGEEEEVFKEILRALSGV 192

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 29/204 (14%)

Query: 1   MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI 60
            G  + T      + +T +    V V+G  GSGK T    + +  G     A      E 
Sbjct: 9   SGVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN 68

Query: 61  KSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +  + G  + +  +     P   ++     A  ++G    +     +    R       
Sbjct: 69  IATMQRGIPLTDEDRW----PWLRSLAEWMDARADAGVSTIITCSALK-RTYRDVLREG- 122

Query: 121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY------Y 174
                  L  D   E ++ R+  R +G               F+ +SL   Q        
Sbjct: 123 -PPSVDFLHLDGPAEVIKGRMSKR-EGH--------------FMPASLLQSQLATLEALE 166

Query: 175 EAKGKVRKIDAAKPVAEVFDAVKA 198
             +  +  +D  +P  ++ +    
Sbjct: 167 PDESGIV-LDLRQPPEQLIERALT 189

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A* Length = 213

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 65/214 (30%)

Query: 28  GGPGSGKGTQCANIVEHF---GYTHL--------SAGDLLRAEIKSGSENG--------- 67
           G  G+GK T    + E     G               + +R  + + S+           
Sbjct: 13  GPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLL 72

Query: 68  ----------TMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLID----------GFP 107
                      +I+  +  G +V                  D+F  D          G P
Sbjct: 73  MFAARAQHLAGVIRPALARGAVVLC----------------DRF-TDATYAYQGGGRGLP 115

Query: 108 RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG-R-EDDNVETIRKRFKVFLE 165
                         + P+  L FD   E    R   R +  R E ++        + +L+
Sbjct: 116 EARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQ 175

Query: 166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
            +       +A  + + +DA  P+AEV   +  +
Sbjct: 176 RA------AQAPERYQVLDAGLPLAEVQAGLDRL 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	100.0
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	100.0
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	100.0
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.98
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.97
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.97
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.97
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.97
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.97
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.96
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.96
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.96
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.96
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.95
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.9
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.89
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.86
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.85
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.85
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.84
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.83
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.83
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.83
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.83
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.83
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.82
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.82
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.81
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.81
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.81
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.8
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.8
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.8
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.8
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.8
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.8
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.79
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.79
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	99.78
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.77
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.77
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.77
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.76
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.76
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.76
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.75
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.75
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.75
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.74
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.73
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.73
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.72
1via_A	175	Shikimate kinase; structural genomics, transferase	99.72
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.72
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.71
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.71
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.7
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.69
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.69
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.68
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.68
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.67
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.67
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.66
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.65
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.65
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.65
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.63
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.62
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.62
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.61
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.61
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.59
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.57
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.57
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	99.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.48
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.46
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.46
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.45
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.45
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.4
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	99.38
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.38
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.34
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.33
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.31
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.31
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	99.3
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	99.25
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.24
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	99.21
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	99.2
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	99.2
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	99.19
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	99.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.17
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.17
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.17
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.16
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.16
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.07
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	99.04
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.97
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.96
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.95
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.94
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.94
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.89
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.88
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.85
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.68
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.66
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.57
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.55
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.5
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.49
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.49
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.48
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.38
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.29
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.28
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.21
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.21
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.19
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.18
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.18
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.17
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.17
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.16
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.15
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.12
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.12
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.11
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.09
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.09
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.07
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.05
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.03
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.02
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.01
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.01
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.0
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.99
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.97
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.96
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.96
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.96
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.94
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.93
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.92
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.91
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.9
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.9
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.9
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.88
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.88
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.87
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.87
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.86
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.85
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.85
3bos_A	242	Putative DNA replication factor; P-loop containing	97.85
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.85
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.84
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.84
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.82
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.82
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.81
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.8
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.78
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.77
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.77
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.76
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.76
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.75
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.74
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.73
3pvs_A	447	Replication-associated recombination protein A; ma	97.72
2og2_A	359	Putative signal recognition particle receptor; nuc	97.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.7
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.69
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.69
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.69
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.69
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.68
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.68
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.68
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.68
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.67
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.67
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.67
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.67
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.66
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.66
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.66
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.66
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.66
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.65
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.65
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.64
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.62
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.61
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.61
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.61
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.6
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.59
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.59
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.57
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.57
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.57
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.57
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.57
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.56
2qgz_A	308	Helicase loader, putative primosome component; str	97.56
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.56
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.56
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.56
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.55
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.55
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.55
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.55
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.55
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.54
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.54
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.54
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.54
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.54
3co5_A	143	Putative two-component system transcriptional RES	97.54
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.53
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.53
1g6h_A	257	High-affinity branched-chain amino acid transport	97.53
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.53
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.53
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.52
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.52
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.52
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.52
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.52
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.51
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.51
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.49
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.49
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.49
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.47
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.47
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.47
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.46
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.45
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.45
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.45
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.45
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.44
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.44
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.43
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.42
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.42
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.42
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.42
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.4
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.39
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.39
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.39
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.39
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.39
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.37
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.37
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.37
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.37
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.36
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.35
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.35
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.35
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.35
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.35
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.35
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.35
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.34
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.34
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.34
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.33
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.33
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.33
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.32
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.32
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.32
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.31
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.3
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.29
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.29
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.29
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.29
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.28
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.28
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.28
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.28
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.28
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.27
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.27
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.27
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.25
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.25
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.24
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.24
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.24
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.23
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.23
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.23
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.23
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.22
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.22
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.21
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.21
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.21
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.2
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.2
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.2
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.2
2xxa_A	433	Signal recognition particle protein; protein trans	97.19
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.18
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.18
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.17
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.17
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.17
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.17
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.17
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.15
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.15
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.14
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.14
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.13
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.13
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.12
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.11
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.11
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.1
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.1
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.1
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.09
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.08
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.08
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.08
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.08
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.07
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.06
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.06
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.05
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.05
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.05
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.05
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.05
2fna_A	357	Conserved hypothetical protein; structural genomic	97.05
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.04
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.03
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.03
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.03
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.02
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.02
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.02
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.02
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.0
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.99
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.99
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.99
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.98
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.98
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	96.97
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.96
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.96
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.95
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.95
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.95
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.94
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.92
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.92
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.91
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.9
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.89
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.89
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.89
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.88
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.87
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.87
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.87
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.86
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.86
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.86
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.86
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.86
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.86
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.84
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.83
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.83
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.82
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.8
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.8
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.8
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.78
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.78
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.77
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.77
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.77
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.77
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.76
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.76
3io5_A	333	Recombination and repair protein; storage dimer, i	96.76
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.75
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.72
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.72
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.71
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.71
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.7
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.7
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.68
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.68
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.67
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.66
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.64
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.63
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	96.63
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.63
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.62
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	96.62
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.62

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=100.00  E-value=1.2e-37  Score=226.88  Aligned_cols=187  Identities=46%  Similarity=0.749  Sum_probs=170.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      .-...+|++|+|.|||||||+|+|+.|+++||++++|.+|++|..+..++..+..+..++..+..+|+++...++.+.+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~  102 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMI  102 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hcC--CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           95 ESG--NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        95 ~~~--~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      +..  ..++|+||||++..+...|.. ....++++|+|++|.+++.+|+..|  ..+|.++.++.+.+|+..|++...|+
T Consensus       103 ~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl  181 (217)
T 3umf_A          103 KLVDKNCHFLIDGYPRELDQGIKFEK-EVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPV  181 (217)
T ss_dssp             HHTTTCSEEEEETBCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hccccccCcccccCCCcHHHHHHHHH-hCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            533  678999999999999999988 7888999999999999999999999  44678888999999999999999999


Q ss_pred             HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++|.+.+.++.||++.++++++++|.+.|.+
T Consensus       182 ~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          182 IEHYKQQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=100.00  E-value=2.9e-35  Score=213.38  Aligned_cols=179  Identities=34%  Similarity=0.700  Sum_probs=164.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      |+|+|.|||||||+|+|+.|++++|++++|+++++|+.+..++..+.....++..+..+|++++..++...+..  ..++
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~   78 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNV   78 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCce
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999864  5679


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc----cC------------------CCCCCcHHHH
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR----NQ------------------GREDDNVETI  156 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r----~~------------------~~~~~~~~~~  156 (209)
                      |+||||++..+...|...   ....++.+|+|++|.+++.+|+..|    ..                  .|.++..+.+
T Consensus        79 ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i  158 (206)
T 3sr0_A           79 IFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVI  158 (206)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHH
T ss_pred             EecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHH
Confidence            999999999999887653   5568999999999999999999998    11                  2667889999


Q ss_pred             HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .+|+..|++...|+.++|.+.+.++.||++.++++++++|.+.|..
T Consensus       159 ~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e  204 (206)
T 3sr0_A          159 KKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD  204 (206)
T ss_dssp             HHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999998865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=100.00  E-value=3.2e-33  Score=204.02  Aligned_cols=181  Identities=33%  Similarity=0.593  Sum_probs=150.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-ND   99 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~   99 (209)
                      .+.+.|.|+|||||||+|+.|++++|+++++.++++++.+..++..+..+.+++..+..+|++++..++.+.+.+.. ..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~   87 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCAN   87 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCC
Confidence            46789999999999999999999999999999999999989999999999999999999999999999999998643 57


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc----cC-------------------------CCCC
Q 028388          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR----NQ-------------------------GRED  150 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r----~~-------------------------~~~~  150 (209)
                      ++|+||||++..+...|.. ....++.+|+|++|++++.+|+.+|    ..                         .|.+
T Consensus        88 g~ILDGfPRt~~Qa~~L~~-~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D  166 (230)
T 3gmt_A           88 GYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD  166 (230)
T ss_dssp             CEEEESCCCSHHHHHHHHH-TTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred             CeEecCCCCcHHHHHHHHH-hCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence            8999999999999999887 7778999999999999999999999    22                         2778


Q ss_pred             CcHHHHHHHHHHHHhhchhHHHHHhhc-----------CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          151 DNVETIRKRFKVFLESSLPVVQYYEAK-----------GKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +.++.+.+|+..|++...|+.++|...           +.+..||++.+++++++.|.+.+.+
T Consensus       167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~  229 (230)
T 3gmt_A          167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS  229 (230)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence            899999999999999999999999973           6789999999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.98  E-value=2.2e-30  Score=193.16  Aligned_cols=184  Identities=32%  Similarity=0.602  Sum_probs=163.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +.+|++|+|+|+|||||||+|+.|++++|+++++.|++++..+..++..+..+.+++..+...+++.+..++...+....
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~  105 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ  105 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence            56789999999999999999999999999999999999999888889999999999999999999999888888887533


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-C--------------------------
Q 028388           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q--------------------------  146 (209)
Q Consensus        98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-~--------------------------  146 (209)
                       +.++|+||||+...+...+...   ....|+.+|+|++|++++.+|+.+|. .                          
T Consensus       106 ~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  185 (243)
T 3tlx_A          106 CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEP  185 (243)
T ss_dssp             GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCB
T ss_pred             ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccccc
Confidence             7889999999999888776653   34678999999999999999999881 1                          


Q ss_pred             --CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          147 --GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       147 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                        .|.++..+.+.+|+..|++...++.++|...+.++.+|++.++++++++|.+.|.
T Consensus       186 l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  242 (243)
T 3tlx_A          186 LIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID  242 (243)
T ss_dssp             CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence              2556788999999999999999999999988889999999999999999988764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.97  E-value=7.2e-29  Score=181.96  Aligned_cols=181  Identities=30%  Similarity=0.612  Sum_probs=160.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|+|+|||||||+|+.|++++|+.+++.|+++++.+..++..+..+.+.+..+...+++....++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            4689999999999999999999999999999999999989899999999999999999999998888888887533 789


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~  148 (209)
                      +|+||||....+...+...   ....|+.+|+|++|++++.+|+..|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccCC
Confidence            9999999999887766653   34568999999999999999999871                             134


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++..+.+.+|+..|.+...++.++|...+.++.+|++.++++++++|.+.|..
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3dl0_A          161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG  214 (216)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            677889999999999999999999999888899999999999999999998864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.97  E-value=1.1e-28  Score=178.32  Aligned_cols=184  Identities=43%  Similarity=0.829  Sum_probs=153.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-   96 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-   96 (209)
                      |.++++|+|+|+|||||||+++.|++.+++.+++.|++++.....++..+..+.+.+..+...+.+....++...+... 
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~   85 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV   85 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc
Confidence            4567899999999999999999999999999999999999887777788888888887788888877777777766532 


Q ss_pred             -CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388           97 -GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        97 -~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                       .+.++|+||+|....+...+.. ....|+++|||++|++++.+|+..|  ..++.++..+.+.+++..+.....++.+.
T Consensus        86 ~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  164 (196)
T 2c95_A           86 NTSKGFLIDGYPREVQQGEEFER-RIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF  164 (196)
T ss_dssp             TTCSCEEEESCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred             ccCCcEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             4789999999999888777766 4567899999999999999999988  22344456778888998888888887777


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      |...+.++.+|++.++++++++|.+.+..
T Consensus       165 ~~~~~~~~~Id~~~~~e~v~~~i~~~l~~  193 (196)
T 2c95_A          165 YEKRGIVRKVNAEGSVDSVFSQVCTHLDA  193 (196)
T ss_dssp             HHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred             HHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence            77666677899989999999999988754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.97  E-value=1.4e-28  Score=180.38  Aligned_cols=181  Identities=31%  Similarity=0.637  Sum_probs=159.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|+|+|||||||+|+.|++.+|+.+++.|++++..+..++..+..+.+.+..+...+++....++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            4689999999999999999999999999999999999989888999999999999999999998888888887533 789


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-----------------------------CCC
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGR  148 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-----------------------------~~~  148 (209)
                      +|+||+|....+...+...   ....++.+|+|++|++++.+|+.+|.                             .+|
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            9999999999887776653   34468999999999999999999871                             123


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++..+.+.+|+..|.+...++.++|...+.++.+|++.++++++++|.+.|..
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~  214 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG  214 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence            567788999999999999999999999888899999999999999999988764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.4e-28  Score=180.52  Aligned_cols=181  Identities=33%  Similarity=0.649  Sum_probs=151.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES-GN   98 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~   98 (209)
                      ++++|+|+|+|||||||+++.|++++|+.+++.|++++.....++..+..+.+.+..+...+++....++...+... .+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            35789999999999999999999999999999999999988888888888888888888888888888888877642 27


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-cC----------------------------
Q 028388           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-NQ----------------------------  146 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~~----------------------------  146 (209)
                      .++|+||||++..+...+..+   ....|+++|||++|++++.+|+..| ..                            
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~  163 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLV  163 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCB
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccc
Confidence            889999999998777665531   4567899999999999999999987 11                            


Q ss_pred             CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          147 GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .+.++..+.+.+++..|.+...++.++|...+.++.+|++.+++++++.|.+.|
T Consensus       164 ~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l  217 (217)
T 3be4_A          164 WRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL  217 (217)
T ss_dssp             CCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence            122345677888999999999999898987778899999999999999998764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.97  E-value=3.4e-28  Score=176.47  Aligned_cols=196  Identities=30%  Similarity=0.583  Sum_probs=150.5

Q ss_pred             CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC
Q 028388            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV   80 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
                      ||.--+-|-. ..+.....+|++|+|+|+|||||||+++.|++.+++++++.|++++..+..++..+..+.+.+..+...
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~   79 (201)
T 2cdn_A            1 MGSSHHHHHH-SSGLVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLV   79 (201)
T ss_dssp             ----------------CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCccccccc-cccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcc
Confidence            4554444433 233445667899999999999999999999999999999999999987777888888888888888888


Q ss_pred             CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHH
Q 028388           81 PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETI  156 (209)
Q Consensus        81 ~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~  156 (209)
                      +.+....++.+.+... .+.++|+||++....+...+..+   ....|+.+|||++|++++.+|+..|  +++++..+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R--~r~~~~~e~~  157 (201)
T 2cdn_A           80 PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVI  157 (201)
T ss_dssp             CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC--CCCCCCHHHH
Confidence            8887777777765432 26789999999988776655442   3356889999999999999999998  6766677888


Q ss_pred             HHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          157 RKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .+++..|.....++.+.+  ...++++|++.+++++.++|.+.+.
T Consensus       158 ~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          158 LNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence            888888888777776666  3457889998999999999998875

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.97  E-value=3.5e-28  Score=178.82  Aligned_cols=183  Identities=26%  Similarity=0.559  Sum_probs=155.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hc-C
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-ES-G   97 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~-~   97 (209)
                      ++++|+|+|+|||||||+++.|++.+++.+++.|+++++....++..+..+.+.+..+...+++....++...+. .. .
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~   82 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC   82 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence            468899999999999999999999999999999999999888888889889998988888899888888888776 21 2


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhc-cC---------------------------
Q 028388           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNR-NQ---------------------------  146 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r-~~---------------------------  146 (209)
                      +.++|+|||+....+...+..+   ....|+++|||++|++++.+|+..| ..                           
T Consensus        83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l  162 (220)
T 1aky_A           83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL  162 (220)
T ss_dssp             GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence            5789999999988776655432   3567899999999999999999887 11                           


Q ss_pred             -CCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          147 -GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                       .+.++..+.+.+++..|.+...++.++|...+.++.+|++.+++++++.|.+.|..
T Consensus       163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  219 (220)
T 1aky_A          163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK  219 (220)
T ss_dssp             BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence             13456678889999999999888888888777789999999999999999988754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.97  E-value=6.7e-28  Score=173.67  Aligned_cols=184  Identities=55%  Similarity=0.939  Sum_probs=154.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      +.+++|+|+|+|||||||+++.|++.+|+.+++.|++++.....+...+..+.+.+..+...+.+....++...+....+
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~   83 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCC
Confidence            34679999999999999999999999999999999999988667778888888888888888888878888887765567


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      ..+|+||+|....+...+...  ....|+++|||++|++++.+|+..|  ..++.++..+.+.+++..+.+...++.+.+
T Consensus        84 ~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~  163 (194)
T 1qf9_A           84 KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHY  163 (194)
T ss_dssp             CCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             CCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence            899999999998877766542  2236889999999999999999988  234566678889999998888777877777


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...+.++++|++.+++++.++|.+.+..
T Consensus       164 ~~~~~~~~id~~~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          164 NKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            7666678899989999999999988754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.97  E-value=1.1e-27  Score=177.68  Aligned_cols=185  Identities=34%  Similarity=0.615  Sum_probs=156.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +.+++.|+|+|+|||||||+++.|++++++.+++.|+++++.+..++..+..+.+.+..+...+++....++...+....
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence            34568999999999999999999999999999999999999888888888889998888888899988888888876432


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc-C-----------------------C--
Q 028388           98 -NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-Q-----------------------G--  147 (209)
Q Consensus        98 -~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~-~-----------------------~--  147 (209)
                       +.++|+|||+++..+...+.++   ....++++|||++|++++.+|+..|. .                       +  
T Consensus        93 ~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~  172 (233)
T 1ak2_A           93 CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP  172 (233)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence             5689999999998777655442   34578999999999999999998871 1                       1  


Q ss_pred             ---CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          148 ---REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       148 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                         +.++..+.+.+++..|.+...++.++|...+.++.+|++.++++++++|.+.+..
T Consensus       173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~  230 (233)
T 1ak2_A          173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK  230 (233)
T ss_dssp             CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence               3456678889999999988888888888777789999999999999999988754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.96  E-value=4.5e-28  Score=177.50  Aligned_cols=178  Identities=37%  Similarity=0.673  Sum_probs=152.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..++..+..+.+.+..+...+++.+..++...+.... +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            3589999999999999999999999999999999999888888888878888877888888888888888876432 467


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cC----------------------------CCCCC
Q 028388          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQ----------------------------GREDD  151 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~----------------------------~~~~~  151 (209)
                      +|+||||+...+...+.. ....|+++|+|++|++++.+|+..| ..                            .|.++
T Consensus        81 ~i~dg~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd  159 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD  159 (214)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred             EEEeCCCCCHHHHHHHHh-cCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence            999999999888777766 5567899999999999999999877 11                            25567


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhc-----CcEEEEcCCCChHHHHHHHHHhc
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAK-----GKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ..+.+.+|+..|.+...++.++|...     +.++.+|++.++++++++|.+.|
T Consensus       160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l  213 (214)
T 1e4v_A          160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL  213 (214)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            78899999999999999998888764     57889999999999999998876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.96  E-value=7e-28  Score=174.41  Aligned_cols=183  Identities=39%  Similarity=0.766  Sum_probs=148.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--   96 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   96 (209)
                      +.+++|+|+|+|||||||+++.|++++|+.+++.|++++.....+...+..+.+.+..+...+.+.....+.+.+...  
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~   89 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLG   89 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccc
Confidence            346899999999999999999999999999999999998886667777888888888788888887777777766543  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccC--CCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      .+..+|+||++....+...+.. ....|+++|||++|++++.+|+..|..  ++.++..+.+.+++..+.....++.++|
T Consensus        90 ~~~~vi~dg~~~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  168 (199)
T 2bwj_A           90 DTRGFLIDGYPREVKQGEEFGR-RIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYY  168 (199)
T ss_dssp             SCSCEEEETCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999888777766 444788999999999999999998811  1222244677788877888777777777


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...+.++++|++.++++++++|.+.+..
T Consensus       169 ~~~~~~~~id~~~~~e~v~~~i~~~l~~  196 (199)
T 2bwj_A          169 ETKTQLHKINAEGTPEDVFLQLCTAIDS  196 (199)
T ss_dssp             HHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            7666678899989999999999988754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.96  E-value=4e-27  Score=171.05  Aligned_cols=185  Identities=49%  Similarity=0.930  Sum_probs=150.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH-cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      .+.++++|+|+|+|||||||+++.|++.+|+.+++.|++++.... .+...+..+..++..+...+.+....++...+..
T Consensus        11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~   90 (203)
T 1ukz_A           11 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   90 (203)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHh
Confidence            356678999999999999999999999999999999999988654 4677778888888777777777666666555432


Q ss_pred             c--CC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           96 S--GN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        96 ~--~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      .  .+ ..+|+||++........+.. ....++++|||++|++++.+|+..|  ..++.++..+.+.+++..|.+...++
T Consensus        91 ~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~  169 (203)
T 1ukz_A           91 NVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPV  169 (203)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHH
T ss_pred             hhccCCCeEEEeCCCCCHHHHHHHHH-hcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHH
Confidence            1  23 68999999999887777766 4556899999999999999999988  23455667888888998888888888


Q ss_pred             HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++|...+.++.+|++.++++++++|.+.+..
T Consensus       170 ~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~  201 (203)
T 1ukz_A          170 IEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD  201 (203)
T ss_dssp             HHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            78777677778899999999999999988754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.96  E-value=6.1e-27  Score=168.90  Aligned_cols=183  Identities=56%  Similarity=0.962  Sum_probs=146.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME----   94 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----   94 (209)
                      +|++|+|+|+|||||||+++.|++.+|+++++.|++++..... ++.++..+.+.+..+...+.+....++...+.    
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   81 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA   81 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence            4789999999999999999999999999999999999887654 55667777777777777777665544444332    


Q ss_pred             hc-CCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchh
Q 028388           95 ES-GNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (209)
Q Consensus        95 ~~-~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (209)
                      .. .+..+|+||++....+...+...  ....++++|||++|++++.+|+..|  ..+++++..+.+.+++..|.....+
T Consensus        82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~  161 (196)
T 1tev_A           82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKP  161 (196)
T ss_dssp             HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHH
Confidence            21 37899999999998876655442  2235788999999999999999988  3367777788888899999998888


Q ss_pred             HHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +.++|...+.++++|++.++++++++|.+.+..
T Consensus       162 ~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          162 IIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            888888777788999999999999999988753

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.96  E-value=1.5e-27  Score=175.64  Aligned_cols=179  Identities=27%  Similarity=0.524  Sum_probs=149.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+++.|++.+|+.+++.|+++++.+..++..+..+.+.+..+...+++.+..++...+....+.++
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~v   80 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGW   80 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeE
Confidence            47999999999999999999999999999999999998777778888888888888888888888888888764337899


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc---C--C--------------------------
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN---Q--G--------------------------  147 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~---~--~--------------------------  147 (209)
                      |+|||+....+...+...   ....|+++|||++|++++.+|+..|.   .  +                          
T Consensus        81 IlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~  160 (223)
T 2xb4_A           81 LLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSA  160 (223)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEEC
T ss_pred             EEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccccc
Confidence            999999998777766542   34579999999999999999999881   1  1                          


Q ss_pred             CCCCcHH-HHHHHHHHHHhhchhHHH---HHhh-----cCcEEEEcCCCChHHHHHHHHHhc
Q 028388          148 REDDNVE-TIRKRFKVFLESSLPVVQ---YYEA-----KGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       148 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      +.++..+ .+.+|+..|++...|+.+   +|..     .+.++.+|++.+++++++.|.+.|
T Consensus       161 r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l  222 (223)
T 2xb4_A          161 RADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL  222 (223)
T ss_dssp             CGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence            1123356 888999999999988888   8876     567899999999999999998876

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.96  E-value=3.5e-27  Score=169.08  Aligned_cols=179  Identities=34%  Similarity=0.696  Sum_probs=145.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      .++++|+|+|+|||||||+++.|++++|+.+++.|++++..+..++..+..+.+.+..+...+++.....+...+.    
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----   77 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----   77 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence            4578999999999999999999999999999999999998877788788888888888888888777766665543    


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhcc--CCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388           99 DKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                      .++|+||++....+...+..+   ....|+.+|||++|++++.+|+..|.  .++.++..+.+.+++..|.....++.+.
T Consensus        78 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~  157 (186)
T 3cm0_A           78 ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY  157 (186)
T ss_dssp             SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            349999999887765544331   22347899999999999999999882  2466677888888888888777777777


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      |...+.++.+|++.+++++.++|.+.+.
T Consensus       158 ~~~~~~~~~id~~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          158 YEARGVLKRVDGLGTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred             HHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence            7766668899998999999999988763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.96  E-value=4.7e-27  Score=173.56  Aligned_cols=184  Identities=32%  Similarity=0.584  Sum_probs=151.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      ++++++|+|+|+|||||||+++.|++.+|+.+++.|++++.....++..+..+.+++..+...+++....++.+.+....
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~   83 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLT   83 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCT
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999999999999877788888888888887888888877777777666433


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc----CC-------------------------C
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN----QG-------------------------R  148 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~----~~-------------------------~  148 (209)
                      +..+|+|+++....+...+..  ...++++|||++|++++.+|+..|.    .+                         |
T Consensus        84 ~~~~vid~~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r  161 (227)
T 1zd8_A           84 QYSWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR  161 (227)
T ss_dssp             TSCEEEESCCCSHHHHHHHHT--TSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred             CCCEEEeCCCCCHHHHHHHHH--hcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence            578999999988777665554  3568899999999999999998771    12                         2


Q ss_pred             CCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          149 EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .++..+.+.+++..|.+...++..+|...+.++.+|++ ++++++++|.+.+....
T Consensus       162 ~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~  216 (227)
T 1zd8_A          162 EDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV  216 (227)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence            34567888999999999888888888877778999998 99999999999987644

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.95  E-value=1.6e-26  Score=170.18  Aligned_cols=183  Identities=31%  Similarity=0.625  Sum_probs=147.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES--   96 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   96 (209)
                      ++|++|+|+|+|||||||+++.|++++++.+++.|++++.....++..+..+.+++..+...+++....++.+.+...  
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~   82 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   82 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence            456789999999999999999999999999999999999877778888888888888888888888777777666431  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cC---C---------------------CCCC
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQ---G---------------------REDD  151 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~---~---------------------~~~~  151 (209)
                      ...++|+||++....+...+.. ....|+++|||+++++++.+|+..| ..   +                     +..+
T Consensus        83 ~~~~~vidg~~~~~~~~~~l~~-~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d  161 (222)
T 1zak_A           83 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD  161 (222)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred             cCCcEEEECCCCCHHHHHHHHH-cCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence            1456788999998877777766 5567899999999999999999877 11   1                     1234


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      ..+.+.+|+..|+....++..+|..  .++.+|++.+++++++.|.+.+....
T Consensus       162 ~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~l  212 (222)
T 1zak_A          162 TEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSIL  212 (222)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhhc
Confidence            5567888888888877776665543  47889999999999999998886543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.90  E-value=6e-22  Score=140.32  Aligned_cols=170  Identities=16%  Similarity=0.197  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC----CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      ++|+|+|+|||||||+++.| +.+|+.+++.++++++.....    .............   .........+...+....
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~   77 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTSN   77 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhcC
Confidence            68999999999999999999 999999999999999875542    1222222222211   112334555666664445


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCC--CCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      +..+|+||+ ....+...+.. ....++++|||++|++++.+|+..|  +++  ....+.+.+++......  +... +.
T Consensus        78 ~~~vi~dg~-~~~~~~~~l~~-~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~r~~~~~~~--~~~~-~~  150 (179)
T 3lw7_A           78 HDLVVFDGV-RSLAEVEEFKR-LLGDSVYIVAVHSPPKIRYKRMIER--LRSDDSKEISELIRRDREELKL--GIGE-VI  150 (179)
T ss_dssp             CSCEEEECC-CCHHHHHHHHH-HHCSCEEEEEEECCHHHHHHHHHTC--C----CCCHHHHHHHHHHHHHH--THHH-HH
T ss_pred             CCeEEEeCC-CCHHHHHHHHH-HhCCCcEEEEEECCHHHHHHHHHhc--cCCCCcchHHHHHHHHHhhhcc--ChHh-HH
Confidence            789999998 88888888877 4457889999999999999999998  443  24566666665332211  1222 33


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .... +++|++.+++++.++|.+.+...
T Consensus       151 ~~ad-~vId~~~~~~~~~~~i~~~l~~~  177 (179)
T 3lw7_A          151 AMAD-YIITNDSNYEEFKRRCEEVTDRV  177 (179)
T ss_dssp             HTCS-EEEECCSCHHHHHHHHHHHHHHH
T ss_pred             HhCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            3333 45666669999999999887653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.89  E-value=6.5e-21  Score=142.23  Aligned_cols=183  Identities=31%  Similarity=0.602  Sum_probs=141.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGN   98 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (209)
                      .+|.+|+|.|+|||||||+++.|++++|+..++.|+++..........+..+...+..+...+.....+.+...+....+
T Consensus        25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~  104 (246)
T 2bbw_A           25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRG  104 (246)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence            35789999999999999999999999999999999998876555555666666666667777777777767666554345


Q ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-c---CC-------------------------CC
Q 028388           99 DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-N---QG-------------------------RE  149 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~---~~-------------------------~~  149 (209)
                      .++++||++....+...+..  ...++++|+|++|++++.+|+..| .   .+                         ..
T Consensus       105 ~~~il~g~~~~~~~~~~l~~--~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld  182 (246)
T 2bbw_A          105 QHWLLDGFPRTLGQAEALDK--ICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE  182 (246)
T ss_dssp             SCEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred             CeEEEECCCCCHHHHHHHHh--hcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence            67889999877655444443  356789999999999999998776 1   11                         22


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+..+.+.+++..|.+...++..+|...+.++.+|++.+ +++++.|.+.+....
T Consensus       183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~  236 (246)
T 2bbw_A          183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKI  236 (246)
T ss_dssp             GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhC
Confidence            335577888888888888888888888778899999877 999999998886543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.86  E-value=3.2e-20  Score=134.36  Aligned_cols=168  Identities=16%  Similarity=0.295  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH------------HH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------------IK   87 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~   87 (209)
                      .+|+|+|++||||||+++.|++.|  |..++....      +.++..+..+++.+..+...+....            ..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~   76 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVL   76 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999998  444443211      3345566666666665554443221            11


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCC--
Q 028388           88 LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDD--  151 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--  151 (209)
                      .+...+.  .+..||+|+|..+            .++...+...  ....||++|||++|++++.+|+.+|  ++..+  
T Consensus        77 ~i~p~l~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r--~~~~dr~  152 (205)
T 4hlc_A           77 KVIPALK--EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN--SRDQNRL  152 (205)
T ss_dssp             THHHHHH--TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---------C
T ss_pred             HHHHHHH--cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhc--CCcccch
Confidence            1222222  4889999976422            2333333322  5678999999999999999999988  43322  


Q ss_pred             --cHHHHHHHHHHHHhhchhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          152 --NVETIRKRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                        ....++++....+.      +... ....+++||++.+++++.+.|.+.|.+..+
T Consensus       153 e~~~~~f~~~v~~~Y~------~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~  203 (205)
T 4hlc_A          153 DQEDLKFHEKVIEGYQ------EIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE  203 (205)
T ss_dssp             CHHHHHHHHHHHHHHH------HHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHH------HHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence              12233333322111      1122 234689999999999999999888765443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.85  E-value=1.6e-19  Score=133.09  Aligned_cols=176  Identities=16%  Similarity=0.283  Sum_probs=110.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-HHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-IKLLQKAME   94 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~   94 (209)
                      +.++++|+|+|+|||||||+++.|++.++  +.++....      +.++..+..+++++..+........ .-...+...
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~------p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~   96 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE   96 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT------TTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC------CCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999999997  45544311      3345566677776665553333221 111111111


Q ss_pred             h---------cCCCeEEEe----------CCCCCHH--HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc--CCCC
Q 028388           95 E---------SGNDKFLID----------GFPRNEE--NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN--QGRE  149 (209)
Q Consensus        95 ~---------~~~~~~i~d----------g~~~~~~--~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~--~~~~  149 (209)
                      .         ..+..||+|          |+++...  +...+..+  ....||++|||++|++++.+|+.+|.  ..+.
T Consensus        97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~  176 (229)
T 4eaq_A           97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRL  176 (229)
T ss_dssp             HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CC
T ss_pred             HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccch
Confidence            1         147899999          7765443  22233222  56789999999999999999999981  1222


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +.....+.+++...+....   .  .....++++|++.+++++.++|.+.|....
T Consensus       177 e~~~~~~~~rv~~~y~~l~---~--~~~~~~~vIDa~~s~eev~~~I~~~l~~~l  226 (229)
T 4eaq_A          177 DQEDLKFHEKVIEGYQEII---H--NESQRFKSVNADQPLENVVEDTYQTIIKYL  226 (229)
T ss_dssp             CHHHHHHHHHHHHHHHHHT---T--TCTTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHH---H--hCCCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence            2234445555544332211   1  112468899999999999999998886544

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.85  E-value=2.2e-20  Score=136.86  Aligned_cols=171  Identities=15%  Similarity=0.248  Sum_probs=104.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-------ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH----
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI----   86 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   86 (209)
                      |.++++|+|+|++||||||+++.|++.++.       .++..    ++  +.++..+..+++++..+...+.....    
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a   95 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFA   95 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            457899999999999999999999999843       33322    11  23556677777777665433333221    


Q ss_pred             ---H----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028388           87 ---K----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN  145 (209)
Q Consensus        87 ---~----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~  145 (209)
                         .    .+...+.  .+..||+|+|..+            .++...+...  ....||++|||++|++++.+|+.+|.
T Consensus        96 ~R~~~~~~~i~p~l~--~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A           96 GRREHLALVIEPALA--RGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHHHHH--cCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence               1    1222222  4789999976322            2333333321  46789999999999999999999881


Q ss_pred             -CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          146 -QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                       ..+.+.....+.++....+..   +...  ....+++||++.+++++.++|.+.|.
T Consensus       174 ~~dr~E~~~~ef~~rv~~~Y~~---la~~--~~~~~~vIDa~~s~eeV~~~I~~~l~  225 (227)
T 3v9p_A          174 MPDKFESESDAFFARTRAEYLR---RAQE--APHRFVIVDSSEPIAQIRKQLEGVLA  225 (227)
T ss_dssp             CC---CCHHHHHHHHHHHHHHH---HHHH--CTTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CccchhhhhHHHHHHHHHHHHH---HHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence             112222223444443332221   1221  23468999999999999999988764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.84  E-value=2.2e-19  Score=130.00  Aligned_cols=160  Identities=17%  Similarity=0.249  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHHHHhc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKAMEES   96 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~   96 (209)
                      .+++|+|+|+|||||||+++.|++.+|+.+++.|++.....          ......+..+.....   ...+.+.+  .
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--~   84 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--A   84 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH--T
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH--h
Confidence            46799999999999999999999999999999987642210          000111222222211   23333333  2


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      .+..+|+|+.+........+.. ....+..+|||++|++++.+|+..|  .......+.+...+..+    .+.   + .
T Consensus        85 ~~~~vivd~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~----~~~---~-~  153 (202)
T 3t61_A           85 SREPVVVSCSALKRSYRDKLRE-SAPGGLAFVFLHGSESVLAERMHHR--TGHFMPSSLLQTQLETL----EDP---R-G  153 (202)
T ss_dssp             SSSCCEEECCCCSHHHHHHHHH-TSTTCCEEEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHC----CCC---T-T
T ss_pred             cCCCEEEECCCCCHHHHHHHHH-hcCCCeEEEEEeCCHHHHHHHHHHh--hccCCCHHHHHHHHHhc----CCC---C-C
Confidence            4778999988777777777776 4455679999999999999999998  32222333333332222    111   1 2


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ....++||++.++++++++|.+.|..
T Consensus       154 ~~~~~~Id~~~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          154 EVRTVAVDVAQPLAEIVREALAGLAR  179 (202)
T ss_dssp             STTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence            22467888889999999999988864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.83  E-value=4.2e-19  Score=129.17  Aligned_cols=175  Identities=18%  Similarity=0.205  Sum_probs=109.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCC--CCCH-HHH-------H
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK--IVPS-EVT-------I   86 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-------~   86 (209)
                      ++++|+|+|++||||||+++.|++.++   +.++....      +.++..+..+++++..+.  .... ...       .
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~   78 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA   78 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999985   44443311      245566677777766543  2222 211       1


Q ss_pred             HHHHHHHHh--cCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc-CCCC
Q 028388           87 KLLQKAMEE--SGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN-QGRE  149 (209)
Q Consensus        87 ~~i~~~~~~--~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~  149 (209)
                      ..+.+.+..  ..+..||+|.|..+            ..+...+...  ....||++|||++|++++.+|+..|. ..+.
T Consensus        79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~  158 (213)
T 4edh_A           79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRF  158 (213)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTT
T ss_pred             HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcc
Confidence            112222221  14789999975322            2333333332  46789999999999999999999881 1122


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      +.....+.++....+..   +...+  ...+++||++.+++++.++|.+.|.....
T Consensus       159 E~~~~~~~~rv~~~y~~---l~~~~--~~~~~vIDa~~s~eeV~~~I~~~l~~~l~  209 (213)
T 4edh_A          159 EQEDRRFFEAVRQTYLQ---RAAQA--PERYQVLDAGLPLAEVQAGLDRLLPNLLE  209 (213)
T ss_dssp             TTSCHHHHHHHHHHHHH---HHHHC--TTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHH---HHHHC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            22223444444332221   12212  34689999999999999999998876554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=1.3e-19  Score=131.07  Aligned_cols=171  Identities=12%  Similarity=0.142  Sum_probs=104.7

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      ++.+.++.+|+|+|+|||||||+++.|++.+|+.+++.|++.....  +......+...-   ..........++.... 
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~~---~~~~~~~e~~~l~~l~-   92 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTERG---EAGFRELERNMLHEVA-   92 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHHH---HHHHHHHHHHHHHHHT-
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhcC---hHHHHHHHHHHHHHHh-
Confidence            3455667899999999999999999999999999999998876642  222322222110   1001111122233222 


Q ss_pred             hcCCCeEEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hc-cCCC-CCCcHHHHHHHHHHHHhhch
Q 028388           95 ESGNDKFLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NR-NQGR-EDDNVETIRKRFKVFLESSL  168 (209)
Q Consensus        95 ~~~~~~~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~-~r-~~~~-~~~~~~~~~~~~~~~~~~~~  168 (209)
                        ....+|++   |.+........+..     ++.+|||++|++++.+|+. .| .++. .....+.+.+++........
T Consensus        93 --~~~~~vi~~ggg~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~  165 (199)
T 3vaa_A           93 --EFENVVISTGGGAPCFYDNMEFMNR-----TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRA  165 (199)
T ss_dssp             --TCSSEEEECCTTGGGSTTHHHHHHH-----HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHH
T ss_pred             --hcCCcEEECCCcEEccHHHHHHHHc-----CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHH
Confidence              24566777   34444444444443     5789999999999999998 44 1121 13345556666665555444


Q ss_pred             hHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388          169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       169 ~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~  203 (209)
                      +.   |.. .. +++|++ .++++++++|.+.+...
T Consensus       166 ~~---y~~-ad-~~Idt~~~s~ee~~~~I~~~l~~~  196 (199)
T 3vaa_A          166 PF---YTQ-AQ-YIFNADELEDRWQIESSVQRLQEL  196 (199)
T ss_dssp             HH---HTT-SS-EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred             HH---Hhh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence            43   444 33 566665 49999999999887654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.83  E-value=5e-19  Score=128.68  Aligned_cols=174  Identities=16%  Similarity=0.276  Sum_probs=110.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---C-ceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHH-HH----
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---Y-THLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSE-VT----   85 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~----   85 (209)
                      ++++|+|+|++||||||+++.|++.+.   + .++..    ++  +.++..+..+++++...     ...... ..    
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~   75 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY   75 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence            468999999999999999999999884   3 22221    11  34566777777776632     222221 11    


Q ss_pred             ---HH----HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           86 ---IK----LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        86 ---~~----~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                         .+    .+..++.  .+..||+|.|..+            ..+...+...  ....||++|||++|++++.+|+.+|
T Consensus        76 A~R~~~~~~~i~paL~--~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R  153 (213)
T 4tmk_A           76 AARVQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR  153 (213)
T ss_dssp             HHHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence               12    2223333  4899999975322            3333333332  5678999999999999999999998


Q ss_pred             -cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388          145 -NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA  207 (209)
Q Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~  207 (209)
                       ...+.+.....++++....+..   +   ......+++||++.+++++.++|.+.+......+
T Consensus       154 ~~~dr~E~~~~~f~~rv~~~y~~---l---a~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~~  211 (213)
T 4tmk_A          154 GELDRIEQESFDFFNRTRARYLE---L---AAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKEL  211 (213)
T ss_dssp             SSCCTTTTSCHHHHHHHHHHHHH---H---HHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCccchhhhHHHHHHHHHHHHHH---H---HHHCCcEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence             1112222223344443332221   1   1222578999999999999999999887765543

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.83  E-value=4.6e-19  Score=127.62  Aligned_cols=166  Identities=16%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----------HHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----------IKL   88 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~   88 (209)
                      ++|+|+|+.||||||+++.|++.|   |..++....      +.++..+..++..+......+....          ...
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~   74 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE   74 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999988   444443211      2344444455544443333222211          122


Q ss_pred             HHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           89 LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        89 i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                      +...+.  .+..||+|.|..+            ..+...+...  ....||++|||++|++++.+|...+  .+.+. . 
T Consensus        75 I~~~L~--~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~--dr~e~-~-  148 (197)
T 3hjn_A           75 IKQYLS--EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGEL--NRFEK-R-  148 (197)
T ss_dssp             HHHHHT--TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC-----CTTCC-H-
T ss_pred             HHHHHH--CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCc--Ccccc-H-
Confidence            333333  4889999976422            2222222221  5678999999999999999998766  44333 2 


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+.++....+.   .+..  .....++++|++.+++++.++|.+.|++.+
T Consensus       149 ef~~rv~~~y~---~la~--~~~~~~~~IDa~~~~eeV~~~I~~~i~~rl  193 (197)
T 3hjn_A          149 EFLERVREGYL---VLAR--EHPERIVVLDGKRSIEEIHRDVVREVKRRW  193 (197)
T ss_dssp             HHHHHHHHHHH---HHHH--HCTTTEEEEETTSCHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHH---HHHH--hCCCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            34444333222   1111  223468999999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.83  E-value=6.8e-19  Score=126.52  Aligned_cols=163  Identities=20%  Similarity=0.320  Sum_probs=102.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------HH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------IK   87 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~   87 (209)
                      ++|+|+|+|||||||+++.|++++   |+++++.+.      +.....+..+.+.+..+...+....           ..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~   74 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE   74 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   899988742      1223344444554544433222111           11


Q ss_pred             HHHHHHHhcCCCeEEEe----------CCCCCH--HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           88 LLQKAMEESGNDKFLID----------GFPRNE--ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~d----------g~~~~~--~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      .+...+.  .+..+++|          |++...  .+...+..+  ....|+++|||++|++++.+|+.+|  ++.+ . 
T Consensus        75 ~i~~~l~--~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r--~~~~-~-  148 (195)
T 2pbr_A           75 KIIPDLK--RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK--NRFE-N-  148 (195)
T ss_dssp             THHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT--TCCC-C-
T ss_pred             HHHHHHh--CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc--Cccc-h-
Confidence            2222332  46788898          443322  222222211  2347899999999999999999876  4433 2 


Q ss_pred             HHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          154 ETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      ..+.+++.. |.+.    ...+   ..++++|++.+++++.++|.+.+...
T Consensus       149 ~~~~~~~~~~~~~~----~~~~---~~~~~Id~~~~~~~~~~~i~~~l~~~  192 (195)
T 2pbr_A          149 KEFLEKVRKGFLEL----AKEE---ENVVVIDASGEEEEVFKEILRALSGV  192 (195)
T ss_dssp             HHHHHHHHHHHHHH----HHHS---TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH----HhhC---CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence            334444432 3221    1111   45788999999999999999888654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.82  E-value=1.6e-19  Score=129.76  Aligned_cols=121  Identities=12%  Similarity=0.164  Sum_probs=76.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +++|++|+|+|+|||||||+++.|++.+++.+++.|.+..................+..   .....+...+...+.  .
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~--~   76 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQ--S   76 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHH--T
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHh--C
Confidence            45688999999999999999999999999999999776544322100000000000000   001111222333333  4


Q ss_pred             CCeEEEeCCCCCHHHHHHH---HHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           98 NDKFLIDGFPRNEENRAAF---EAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~---~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      +.++|+|+++........+   .. ....|+++|||++|++++.+|+..|
T Consensus        77 g~~vi~d~~~~~~~~~~~~~~l~~-~~~~~~~~v~l~~~~e~~~~R~~~R  125 (193)
T 2rhm_A           77 GQSLIMESNFRVDLDTERMQNLHT-IAPFTPIQIRCVASGDVLVERILSR  125 (193)
T ss_dssp             TCCEEEEECCCHHHHHHHHHHHHH-HSCCEEEEEEEECCHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHHHHh
Confidence            6889999987322122223   33 4456789999999999999999988

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.81  E-value=1.5e-19  Score=133.22  Aligned_cols=176  Identities=15%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC---CCCCHH-HH-------HH-
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSE-VT-------IK-   87 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-------~~-   87 (209)
                      ++.+|+|+|++||||||+++.|++.++...++...+.++  +.++..+..+++++..+   ...... ..       .. 
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            578999999999999999999999985332221111222  34566777777776421   122221 11       11 


Q ss_pred             ---HHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC
Q 028388           88 ---LLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE  149 (209)
Q Consensus        88 ---~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~  149 (209)
                         .+..++.  .+..||+|.|..+            ..+...+...  ....||++|||++|++++.+|+.+| ...+.
T Consensus       104 ~~~~I~paL~--~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~  181 (236)
T 3lv8_A          104 VENVIKPALA--RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRI  181 (236)
T ss_dssp             HHHTHHHHHH--TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTT
T ss_pred             HHHHHHHHHH--cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchh
Confidence               2222333  4889999965321            2333333321  4578999999999999999999988 11122


Q ss_pred             CCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          150 DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      +.....+.+++...+..   +   ......+++||++.+++++.++|.+.|.....
T Consensus       182 E~~~~~~~~rv~~~y~~---l---a~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~  231 (236)
T 3lv8_A          182 EKMDISFFERARERYLE---L---ANSDDSVVMIDAAQSIEQVTADIRRALQDWLS  231 (236)
T ss_dssp             TTSCHHHHHHHHHHHHH---H---HHHCTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHH---H---HHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            22223444444332221   1   22222389999999999999999988876543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.81  E-value=9.4e-19  Score=124.33  Aligned_cols=162  Identities=20%  Similarity=0.254  Sum_probs=91.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH-HhCCceecHhHHHHHHHHcCCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE-HFGYTHLSAGDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~-~l~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      |.+|+|+|+|||||||+++.|++ .+++.+++.|. ++..+.....     +.......       ........+...+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~   73 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY   73 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence            57899999999999999999999 68999999854 5554333211     11111000       11223444555552


Q ss_pred             h-cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           95 E-SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        95 ~-~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      . ..+..+|+|+++....+...+..+  ....+..+|||++|++++.+|+..|  +....+.+.+.+++..|....    
T Consensus        74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~i~~~~~~~~~~~----  147 (181)
T 1ly1_A           74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMREYL----  147 (181)
T ss_dssp             SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHHHHH----
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc--ccCCCCHHHHHHHHHHhhccC----
Confidence            2 357899999998887666555542  1122457999999999999999988  433445666666666554421    


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                         .  ...+.+|++.+ +++...|...+..
T Consensus       148 ---~--~~~~~id~~~~-~~v~~~i~~~l~~  172 (181)
T 1ly1_A          148 ---G--LPVYNGTPGKP-KAVIFDVDGTLAK  172 (181)
T ss_dssp             ---T--CCCC---------------------
T ss_pred             ---C--CCccccCCCCC-ceeeehhhhhhhc
Confidence               1  11234777653 7777777766654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.81  E-value=1.9e-18  Score=121.87  Aligned_cols=151  Identities=17%  Similarity=0.204  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+++.|++++++.+++.|.+.....    ..                ....... ..+.  .+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~----------------~~~~~~~-~~l~--~~~~v   58 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----GN----------------EKLFEHF-NKLA--DEDNV   58 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----CH----------------HHHHHHH-HHHT--TCCSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----HH----------------HHHHHHH-HHHH--hCCCe
Confidence            479999999999999999999999999999987655431    00                0001111 1122  35667


Q ss_pred             EEeCCC---------------CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388          102 LIDGFP---------------RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus       102 i~dg~~---------------~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                      ++|.+.               ....+...+.. ....|+.+|||++|++++.+|+..|  +++....+.+.+....|.+ 
T Consensus        59 i~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r--~r~~~~~~~~~~~~~~~~~-  134 (173)
T 3kb2_A           59 IIDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYRE-  134 (173)
T ss_dssp             EEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHH-
T ss_pred             EEeeeecchHHHHHHHHHhhHhhHHHHHHHhc-cCCCCCEEEEEeCCHHHHHHHHHhc--CCcchhhhHHHHHHHHHHH-
Confidence            777432               12223333333 4457899999999999999999998  5555544333322222222 


Q ss_pred             chhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388          167 SLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       167 ~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~  204 (209)
                         ....+.  ...+++|++ .+++++.++|.+.++...
T Consensus       135 ---~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          135 ---VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             ---HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred             ---HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence               122222  357788887 599999999999887644

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.80  E-value=1.6e-18  Score=125.51  Aligned_cols=169  Identities=18%  Similarity=0.262  Sum_probs=100.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------   85 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   85 (209)
                      |+++++|+|+|+|||||||+++.|++++ |+.+++.+...     .....+..+.+.+..+........           
T Consensus         1 m~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~   75 (204)
T 2v54_A            1 MSRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEF   75 (204)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            3568899999999999999999999999 57776642210     022234444555543332322211           


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCH-----------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 IKLLQKAMEESGNDKFLIDGFPRNE-----------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 ~~~i~~~~~~~~~~~~i~dg~~~~~-----------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                      ...+...+.  .+..+|+|+|+.+.           .+...+.. ....|+.+|||++|++++.+   +|  +.......
T Consensus        76 ~~~i~~~l~--~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~-~~~~~d~vi~l~~~~e~~~~---~R--~~d~~e~~  147 (204)
T 2v54_A           76 ASFIQEQLE--QGITLIVDRYAFSGVAYAAAKGASMTLSKSYES-GLPKPDLVIFLESGSKEINR---NV--GEEIYEDV  147 (204)
T ss_dssp             HHHHHHHHH--TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHT-TSBCCSEEEEECCCHHHHTT---CC--SSSTTCCS
T ss_pred             HHHHHHHHH--CCCEEEEECchhhHHHHHHccCCCHHHHHHHhc-CCCCCCEEEEEeCCHHHHHh---hc--CcccccHH
Confidence            011222232  46789999886432           22222222 33578999999999999887   34  21111112


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      .+.+++...+....   .  .....++++|++.+++++.++|.+.+....
T Consensus       148 ~~~~rl~~~y~~~~---~--~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l  192 (204)
T 2v54_A          148 TFQQKVLQEYKKMI---E--EGDIHWQIISSEFEEDVKKELIKNIVIEAI  192 (204)
T ss_dssp             HHHHHHHHHHHHHH---T--TCSSCEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---H--hCCCcEEEEECCCCHHHHHHHHHHHHHHHH
Confidence            44455443222110   0  112467899999999999999998886544

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.80  E-value=2.6e-19  Score=130.64  Aligned_cols=173  Identities=13%  Similarity=0.113  Sum_probs=95.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC----ceec-HhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH------
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY----THLS-AGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT------   85 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~----~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   85 (209)
                      ...++++|+|+|++||||||+++.|++.++.    .++. .    ++  +.++..+..+++++...........      
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a   90 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIA   90 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence            3557899999999999999999999998765    2222 1    01  2344455555555543222222111      


Q ss_pred             --HHH----HHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhcc
Q 028388           86 --IKL----LQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRN  145 (209)
Q Consensus        86 --~~~----i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~  145 (209)
                        .+.    +...+.  .+..||+|.|..+            ..+...+...  . ..||++|||++|++++.+|+ +| 
T Consensus        91 ~R~~~~~~~I~paL~--~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~r-  165 (223)
T 3ld9_A           91 MRREHFVKIIKPSLM--QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CK-  165 (223)
T ss_dssp             HHHHHHHHTHHHHHH--TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC------------
T ss_pred             HHHHHHHHHHHHHHh--cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-cc-
Confidence              122    222333  4789999976421            2333333332  3 68999999999999999999 55 


Q ss_pred             CCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388          146 QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEKA  207 (209)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~~  207 (209)
                       .+.+.....+.+++...+..   +...+  ...+++||++.+++++ ++|.+.+....+.+
T Consensus       166 -dr~E~~~~e~~~rv~~~y~~---la~~~--~~~~~vIDa~~sieeV-~~I~~~l~~~lg~~  220 (223)
T 3ld9_A          166 -NGYEFADMEFYYRVRDGFYD---IAKKN--PHRCHVITDKSETYDI-DDINFVHLEVIKVL  220 (223)
T ss_dssp             -------CHHHHHHHHHHHHH---HHHHC--TTTEEEEESSCSSSCC-CHHHHHHHHHHHHH
T ss_pred             -CccccchHHHHHHHHHHHHH---HHHHC--CCCEEEEcCCCCHHHH-HHHHHHHHHHHhhh
Confidence             44332223444444433222   12212  2468999999999999 99999887766543

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.80  E-value=1.6e-19  Score=129.52  Aligned_cols=168  Identities=15%  Similarity=0.250  Sum_probs=98.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH---HHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS---EVTIKLLQKA   92 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~   92 (209)
                      +++|+|+|+|||||||+++.|+++++     +.+++.++++++......... ...+ +   .....   ..+...+...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~-~---~~~~~~~~~~~~~~~~~~   77 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQ-M---RKMDPETQKRIQKMAGRK   77 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGG-G---SSCCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHH-H---hcCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999998     999999999887653321100 0000 0   01111   1112122222


Q ss_pred             HHh-cCCCeEEEeCCCCCHHHH--------HHHHHhcCCCCcEEEEEecCHHHHHH-HHhh--ccCCCCCCcHHHHHHHH
Q 028388           93 MEE-SGNDKFLIDGFPRNEENR--------AAFEAVTKIEPEFVLFFDCSEEEMER-RILN--RNQGREDDNVETIRKRF  160 (209)
Q Consensus        93 ~~~-~~~~~~i~dg~~~~~~~~--------~~~~~~~~~~~~~~i~L~~~~~~~~~-R~~~--r~~~~~~~~~~~~~~~~  160 (209)
                      +.. ..+..+|+|+++......        ..+..   ..|+++|||++|++++.+ |+..  |  +++....+.+..+.
T Consensus        78 i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~l~~~~~~~~~rRl~~~~R--~r~~~~~~~~~~~~  152 (192)
T 1kht_A           78 IAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNE---LNPDLIIVVETTGDEILMRRMSDETR--VRDLDTASTIEQHQ  152 (192)
T ss_dssp             HHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHTSSSC--SSSCCCHHHHHHHH
T ss_pred             HHhhccCCeEEEccceeccccccccccCcHHHHhc---cCCCEEEEEeCCHHHHHHHHhhhccc--CCCcCCHHHHHHHH
Confidence            221 135679999865321100        12222   147889999999999996 8887  6  55555555444332


Q ss_pred             HHHHhhchhHHHHHhhcCcEEEE-cCCCChHHHHHHHHHhc
Q 028388          161 KVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~ee~~~~i~~~i  200 (209)
                      ... +........+.. ..++++ |.+.+++++++.|.+.|
T Consensus       153 ~~~-~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          153 FMN-RCAAMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHH-HHHHHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence            222 111112222322 344555 44456999999998775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.80  E-value=1.1e-19  Score=132.58  Aligned_cols=172  Identities=15%  Similarity=0.145  Sum_probs=103.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHH----------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK----------   87 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   87 (209)
                      +.++++|+|+|+|||||||+++.|+++++..+++.+ .+++. ..+...+..+..++..+..++......          
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHM   84 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            446889999999999999999999999987665542 22211 012333444444443333333222111          


Q ss_pred             -HHHHHHHhcCCCeEEEeCCCCCH---HH------HHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHH
Q 028388           88 -LLQKAMEESGNDKFLIDGFPRNE---EN------RAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVET  155 (209)
Q Consensus        88 -~i~~~~~~~~~~~~i~dg~~~~~---~~------~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~  155 (209)
                       .+...+.  .+..+|+|+++.+.   ..      ...+..+  ....|+.+|||++|++++.+|+..|. .+. +. ..
T Consensus        85 ~~i~~~l~--~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~r~-~~-~~  159 (212)
T 2wwf_A           85 NEIKSLLL--KGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE-EIY-EK-VE  159 (212)
T ss_dssp             HHHHHHHH--HTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS-STT-CS-HH
T ss_pred             HHHHHHHh--CCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc-ccc-cH-HH
Confidence             1222222  36789999986431   00      1122111  22478999999999999999987641 122 22 34


Q ss_pred             HHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          156 IRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.+++...+....       ....++++|++.+++++.++|.+.+...
T Consensus       160 ~~~~~~~~~~~~~-------~~~~~~~Id~~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          160 TQKKIYETYKHFA-------HEDYWINIDATRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHHHHGGGGT-------TCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHh-------ccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence            5555533322211       1345788999999999999999988654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.80  E-value=1.1e-18  Score=127.15  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=96.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc--eec----HhHHHHHHHHcCC---chHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLS----AGDLLRAEIKSGS---ENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~   90 (209)
                      ++++|+|+|+|||||||+++.|+++++..  ++.    .++.+++.+..+.   .........+.....  ...+...+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~i~   80 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDF--SDRYERYIL   80 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHH--HHHHHHTHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHH--HHHHHHHHH
Confidence            57899999999999999999999999873  443    2333443332210   000000000000000  000011122


Q ss_pred             HHHHhcCCCeEEEeCCCCCHH-----------HHHHHHHhcCCCCcEEEEEecCHHHHHHHHh-hccC-CCC--------
Q 028388           91 KAMEESGNDKFLIDGFPRNEE-----------NRAAFEAVTKIEPEFVLFFDCSEEEMERRIL-NRNQ-GRE--------  149 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~~-----------~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~-~r~~-~~~--------  149 (209)
                      ..+.  .+..+|+|+++.+..           +...+.. ....|+++|||++|++++.+|+. .|.. .+.        
T Consensus        81 ~~l~--~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~  157 (213)
T 2plr_A           81 PMLK--SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYS-FAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFP  157 (213)
T ss_dssp             HHHH--TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTT-TSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCT
T ss_pred             HHHh--CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHh-cCCCCCEEEEEeCCHHHHHHHHhccccccccccccccccc
Confidence            2222  468899999865421           1122222 33458999999999999999998 7711 110        


Q ss_pred             -CCcH---HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          150 -DDNV---ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       150 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                       .+..   ..+.+++..++.       .+.....++++|++.+++++.++|.+.+....
T Consensus       158 ~~d~~e~~~~~~~r~~~~~~-------~~~~~~~~~~Id~~~~~e~v~~~I~~~l~~~~  209 (213)
T 2plr_A          158 GLSPEEGFLKYQGLITEVYD-------KLVKDENFIVIDGTKTPKEIQIQIRKFVGELI  209 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH-------HHTTTTTCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHHHHH-------HHHhhCCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence             0001   123333222221       11111257899999999999999998886543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.80  E-value=8e-18  Score=120.75  Aligned_cols=165  Identities=16%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHH-cCCchHHHHHHHHHcCCCCCH--HHHHHH----H
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPS--EVTIKL----L   89 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~----i   89 (209)
                      ++|+|+|+|||||||+++.|+++++     +.+++.|+++.+.+. .....+.   ..+  ....+.  ......    +
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~i   76 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DEM--RKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HHH--TTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hhh--hcCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999999998     888988888876642 2111110   000  111111  111222    2


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHH--------HHHHHHhcCCCCcEEEEEecCHHHHHHH-Hhh--ccCCC-CCCcHHHH-
Q 028388           90 QKAMEESGNDKFLIDGFPRNEEN--------RAAFEAVTKIEPEFVLFFDCSEEEMERR-ILN--RNQGR-EDDNVETI-  156 (209)
Q Consensus        90 ~~~~~~~~~~~~i~dg~~~~~~~--------~~~~~~~~~~~~~~~i~L~~~~~~~~~R-~~~--r~~~~-~~~~~~~~-  156 (209)
                      ...+....+..||+|+++....+        ...+..   ..|+.+|||++|++++.+| +..  |  ++ +....+.+ 
T Consensus        77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~~~~~~rr~~~~~R--~~~~~~~~~~~~  151 (194)
T 1nks_A           77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE---INPSVIFLLEADPKIILSRQKRDTTR--NRNDYSDESVIL  151 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH---HCCSEEEEEECCHHHHHHHHHHCTTT--CCCCCCSHHHHH
T ss_pred             HHHhhccCCCEEEECCchhhccccccccCCCHHHHHh---cCCCEEEEEeCCHHHHHHHHHhhccc--CCCCccCHHHHH
Confidence            22221135789999987432211        223333   2478999999999998866 666  6  54 33333322 


Q ss_pred             -HHHHHHHHhhchhHHHHHhhcCcEEEE-cCCCChHHHHHHHHHhc
Q 028388          157 -RKRFKVFLESSLPVVQYYEAKGKVRKI-DAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~~ee~~~~i~~~i  200 (209)
                       ..++...+.   .....+. ...++++ |++.++++++++|.+.|
T Consensus       152 ~~~~~~~~~~---~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          152 ETINFARYAA---TASAVLA-GSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHH---HHHHHHH-TCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHhc-CCcEEEEeCCCCCHHHHHHHHHHHh
Confidence             222222222   1122221 3457888 88889999999998875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.79  E-value=9.5e-19  Score=127.74  Aligned_cols=175  Identities=16%  Similarity=0.237  Sum_probs=95.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHH---------
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTI---------   86 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   86 (209)
                      |.|.+|++|+|+|+|||||||+++.|+++++...++.+. +++. ..+...+..+..++..+..++.....         
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~   81 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWE   81 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHT
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999999999998654433211 1000 00122333344444333233322111         


Q ss_pred             --HHHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           87 --KLLQKAMEESGNDKFLIDGFPR------------NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        87 --~~i~~~~~~~~~~~~i~dg~~~------------~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                        ..+...+.  .+..+|+|++..            ...+...+.. ....|+++|||++|++++.+|+..|. .+. +.
T Consensus        82 ~~~~i~~~l~--~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~d~vi~l~~~~e~~~~Rl~r~~-~~~-~~  156 (215)
T 1nn5_A           82 QVPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFGH-ERY-EN  156 (215)
T ss_dssp             THHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC------CTT-CS
T ss_pred             HHHHHHHHHH--CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHh-CCCCCCEEEEEeCCHHHHHHHhccCc-ccc-ch
Confidence              12333333  467899996431            1122111121 23468999999999999999997441 121 22


Q ss_pred             HHHHHHHHHH-HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          153 VETIRKRFKV-FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                       ..+.+++.. |.....      .....++++|++.+++++.++|.+.+....
T Consensus       157 -~~~~~~~~~~~~~~~~------~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l  202 (215)
T 1nn5_A          157 -GAFQERALRCFHQLMK------DTTLNWKMVDASKSIEAVHEDIRVLSEDAI  202 (215)
T ss_dssp             -HHHHHHHHHHHHHHTT------CTTSCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHH------hCCCCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence             233333322 211110      112457889998899999999998886544

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.79  E-value=3.4e-18  Score=120.70  Aligned_cols=162  Identities=17%  Similarity=0.231  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+++.|++.+|+++++.|++.+.. . +......+...   +..........++. .+.   ...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~-~-g~~~~~~~~~~---~~~~~~~~~~~~~~-~l~---~~~~   73 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT-S-GMTVADVVAAE---GWPGFRRRESEALQ-AVA---TPNR   73 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH-H-CSCHHHHHHHH---HHHHHHHHHHHHHH-HHC---CSSE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH-h-CCCHHHHHHHc---CHHHHHHHHHHHHH-Hhh---cCCe
Confidence            57999999999999999999999999999998887765 2 22222211110   00000111112222 222   3345


Q ss_pred             EEe-CC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh--hccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          102 LID-GF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL--NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       102 i~d-g~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      |++ |.  +........+..     ++++|||++|++++.+|+.  .|...++....+...+++..+.....+.   +..
T Consensus        74 vi~~g~~~~~~~~~~~~l~~-----~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~  145 (173)
T 1e6c_A           74 VVATGGGMVLLEQNRQFMRA-----HGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQD  145 (173)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             EEECCCcEEeCHHHHHHHHc-----CCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH---HHh
Confidence            554 42  222333333333     5799999999999999998  6611233333344455555444433322   333


Q ss_pred             cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          177 KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                       . .++||++ .+++++.++|.+.+..
T Consensus       146 -~-~~~Id~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          146 -V-AHYVVDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             -H-CSEEEETTSCHHHHHHHHHHHTTC
T ss_pred             -C-cEEEECCCCCHHHHHHHHHHHhcc
Confidence             2 2567776 7999999999998864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.79  E-value=7.4e-18  Score=120.27  Aligned_cols=168  Identities=12%  Similarity=0.146  Sum_probs=99.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      +++|+|+|+|||||||+++.|++.+|+.+++.|++..... + ......+...   +..........++.....  ....
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g-~~~~~~~~~~---g~~~~~~~~~~~~~~~~~--~~~~   77 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-G-ADIAWIFEME---GEAGFRRREREMIEALCK--LDNI   77 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-T-SCHHHHHHHH---HHHHHHHHHHHHHHHHHH--SSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-C-CChhhHHHHh---CHHHHHHHHHHHHHHHHh--cCCc
Confidence            5689999999999999999999999999999988877642 2 2222221111   111111222333443332  2333


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHH--hhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI--LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       101 ~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      +|..|  ..........+..     ...+|||++|++++.+|+  ..+ ..|+........+.+........+.   |..
T Consensus        78 vi~~gg~~~~~~~~~~~l~~-----~~~vi~L~~~~e~l~~Rl~~~~~-~~rp~~~~~~~~~~l~~~~~~r~~~---y~~  148 (185)
T 3trf_A           78 ILATGGGVVLDEKNRQQISE-----TGVVIYLTASIDTQLKRIGQKGE-MRRPLFIKNNSKEKLQQLNEIRKPL---YQA  148 (185)
T ss_dssp             EEECCTTGGGSHHHHHHHHH-----HEEEEEEECCHHHHHHHHHCCTT-CSSCCCCCHHHHHHHHHHHHHHHHH---HHH
T ss_pred             EEecCCceecCHHHHHHHHh-----CCcEEEEECCHHHHHHHHhhcCC-CCCCCCCCCCHHHHHHHHHHHHHHH---Hhh
Confidence            44443  3334444444444     247999999999999999  443 1344433333344444444433333   333


Q ss_pred             cCcEEEEcCC-CChHHHHHHHHHhcCcchh
Q 028388          177 KGKVRKIDAA-KPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       177 ~~~~~~id~~-~~~ee~~~~i~~~i~~~~~  205 (209)
                      ... +++|++ .+++++++.|.+.+.....
T Consensus       149 ~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~  177 (185)
T 3trf_A          149 MAD-LVYPTDDLNPRQLATQILVDIKQTYS  177 (185)
T ss_dssp             HCS-EEEECTTCCHHHHHHHHHHHSCC---
T ss_pred             cCC-EEEECCCCCHHHHHHHHHHHHHHHhh
Confidence            233 456654 4899999999999987553

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=99.78  E-value=2.3e-18  Score=125.24  Aligned_cols=177  Identities=12%  Similarity=0.196  Sum_probs=109.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCC-CCCH-HHH----------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPS-EVT----------   85 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----------   85 (209)
                      |.++++|+|+|++||||||+++.|++.++.....    +++. ..++..+..+++++.... .... ...          
T Consensus         2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~ep-~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~   76 (216)
T 3tmk_A            2 MGRGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKFP-ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEI   76 (216)
T ss_dssp             CCCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EESS-CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEec-CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999999863211    1111 124556666776665433 2221 111          


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCHH-----------HHHHHHHh--cCCCCcEEEEE-ecCHHHHHHHHhhccCCCCCC
Q 028388           86 IKLLQKAMEESGNDKFLIDGFPRNEE-----------NRAAFEAV--TKIEPEFVLFF-DCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        86 ~~~i~~~~~~~~~~~~i~dg~~~~~~-----------~~~~~~~~--~~~~~~~~i~L-~~~~~~~~~R~~~r~~~~~~~  151 (209)
                      .+.+..++.  .+..||+|.|..+-.           ....+..+  ....||++||| ++|++++.+|+..+  +...+
T Consensus        77 ~~~I~paL~--~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~--~dr~E  152 (216)
T 3tmk_A           77 VDKIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFG--DERYE  152 (216)
T ss_dssp             HHHHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSS--CCTTC
T ss_pred             HHHHHHHHH--cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccC--ccccc
Confidence            112333333  488999997643311           11222221  45689999999 99999999998754  22223


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEc-CCCChHHHHHHHHHhcCcchh
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id-~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      . ..+++++...+......... .....+++|| ++.+++++.++|.+.|.....
T Consensus       153 ~-~~f~~rvr~~Y~~la~~~~~-~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~  205 (216)
T 3tmk_A          153 T-VKFQEKVKQTFMKLLDKEIR-KGDESITIVDVTNKGIQEVEALIWQIVEPVLS  205 (216)
T ss_dssp             C-HHHHHHHHHHHHHHHHHHHH-TTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHhccc-cCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            3 35555554433322111000 1345799999 889999999999988876554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.77  E-value=3.7e-17  Score=118.11  Aligned_cols=168  Identities=15%  Similarity=0.167  Sum_probs=100.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH---HHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT---IKLLQKA   92 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~   92 (209)
                      |...++.+|+|+|++||||||+++.|+..+|..+++.+++.....         .. ....+....+...   ...+++.
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~~-~~~~g~~~~~~~~~~~~~~~~~~   93 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------IA-TMQRGIPLTDEDRWPWLRSLAEW   93 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------HH-HHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------HH-HHhcCCCCCCcccccHHHHHHHH
Confidence            444567899999999999999999999999999999877532110         00 0011111111111   1122222


Q ss_pred             HHh--cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           93 MEE--SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        93 ~~~--~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                      +..  ..+..+|+|...........+..  ...+..+|||++|++++.+|+..|  +......+.+...+..+    .+ 
T Consensus        94 ~~~~~~~g~~viid~~~~~~~~~~~l~~--~~~~~~vv~l~~~~e~l~~Rl~~R--~~~~~~~~~l~~~~~~~----~~-  164 (200)
T 4eun_A           94 MDARADAGVSTIITCSALKRTYRDVLRE--GPPSVDFLHLDGPAEVIKGRMSKR--EGHFMPASLLQSQLATL----EA-  164 (200)
T ss_dssp             HHHHHHTTCCEEEEECCCCHHHHHHHTT--SSSCCEEEEEECCHHHHHHHHTTC--SCCSSCGGGHHHHHHHC----CC-
T ss_pred             HHHHHhcCCCEEEEchhhhHHHHHHHHH--hCCceEEEEEeCCHHHHHHHHHhc--ccCCCCHHHHHHHHHHh----CC-
Confidence            211  13567888875555555444444  233567999999999999999988  33222233333222111    11 


Q ss_pred             HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                        .+.. ...++||++.++++++++|.+.+.....
T Consensus       165 --~~~~-~~~~~Id~~~~~~e~~~~I~~~l~~~~~  196 (200)
T 4eun_A          165 --LEPD-ESGIVLDLRQPPEQLIERALTWLDIAPA  196 (200)
T ss_dssp             --CCTT-SCEEEEETTSCHHHHHHHHHHHHCCCGG
T ss_pred             --CCCC-CCeEEEECCCCHHHHHHHHHHHHHhccC
Confidence              1221 2467888888999999999999986543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.77  E-value=1.9e-18  Score=129.78  Aligned_cols=166  Identities=17%  Similarity=0.209  Sum_probs=102.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH---hCCcee--cHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH---FGYTHL--SAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~---l~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      .++++|+|+|+|||||||+++.|++.   +|+.++  +.|.+ +..+......+..   .       ........+...+
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~---~-------~~~~~~~~i~~~l   70 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEE---F-------IKKSTYRLIDSAL   70 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHH---H-------HHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHH---H-------HHHHHHHHHHHHh
Confidence            45789999999999999999999998   688777  76543 3321110000000   0       0111123344444


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      .  . ..+|+|+.+........+...  ....++.+|||++|++++.+|+.+|  ++. ...+.+......|.   .+. 
T Consensus        71 ~--~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R--~~~-~~~~~l~~~~~~~e---~~~-  140 (260)
T 3a4m_A           71 K--N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER--GEK-IPNEVIKKMYEKFD---EPG-  140 (260)
T ss_dssp             T--T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHT--TCS-SCHHHHHHHHHHCC---CTT-
T ss_pred             h--C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhC--CCC-CCHHHHHHHHHHhc---Ccc-
Confidence            3  3 889999977766665555442  3456789999999999999999988  543 23343433322221   111 


Q ss_pred             HHHhhcCcEEEEcCCC--ChHHHHHHHHHhcCcchh
Q 028388          172 QYYEAKGKVRKIDAAK--PVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~--~~ee~~~~i~~~i~~~~~  205 (209)
                      ..+.-....+.+|++.  +++++++.|.+.+....+
T Consensus       141 ~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~~  176 (260)
T 3a4m_A          141 KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPK  176 (260)
T ss_dssp             SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCCC
T ss_pred             ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCCC
Confidence            1111123457888865  899999999988876443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.77  E-value=6.5e-18  Score=120.48  Aligned_cols=167  Identities=16%  Similarity=0.223  Sum_probs=95.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+++.|++.+|+++++.|++.+...  +......+.   ..+...........+...+..  ...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~v   75 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFA---TDGEQEFRRIEEDVVRAALAD--HDGV   75 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHH---HHCHHHHHHHHHHHHHHHHHH--CCSE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCCHHHHHH---HhChHHHHHHHHHHHHHHHhc--CCeE
Confidence            569999999999999999999999999999999877653  222111111   111111112222334433332  3344


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEE
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVR  181 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (209)
                      +.+|...-... .....+.   .+.+|||++|++++.+|+..|. .++........+++..+.....+   .|..... +
T Consensus        76 i~~g~~~v~~~-~~~~~l~---~~~vV~L~~~~e~~~~Rl~~r~-~r~~~~~~~~~~~i~~~~~~r~~---~~~~~~~-~  146 (184)
T 2iyv_A           76 LSLGGGAVTSP-GVRAALA---GHTVVYLEISAAEGVRRTGGNT-VRPLLAGPDRAEKYRALMAKRAP---LYRRVAT-M  146 (184)
T ss_dssp             EECCTTGGGSH-HHHHHHT---TSCEEEEECCHHHHHHHTTCCC-CCSSTTSCCHHHHHHHHHHHHHH---HHHHHCS-E
T ss_pred             EecCCcEEcCH-HHHHHHc---CCeEEEEeCCHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHH---HHhccCC-E
Confidence            44442111111 1111111   4579999999999999999871 12211111122233333222222   2333333 5


Q ss_pred             EEcCC-CChHHHHHHHHHhcCcch
Q 028388          182 KIDAA-KPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       182 ~id~~-~~~ee~~~~i~~~i~~~~  204 (209)
                      +||++ .++++++++|.+.+....
T Consensus       147 ~Idt~~~s~ee~~~~I~~~l~~~~  170 (184)
T 2iyv_A          147 RVDTNRRNPGAVVRHILSRLQVPS  170 (184)
T ss_dssp             EEECSSSCHHHHHHHHHTTSCCCC
T ss_pred             EEECCCCCHHHHHHHHHHHHhhcC
Confidence            77776 799999999999986644

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.76  E-value=7.2e-17  Score=117.10  Aligned_cols=164  Identities=17%  Similarity=0.149  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCC-----CC---------------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VP---------------   81 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------   81 (209)
                      ++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+...+.....     ..               
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5899999999999999999988 99999999998876432222211112221211110     00               


Q ss_pred             -------HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           82 -------SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        82 -------~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                             .+.....+.+.+....+..+|+|+.. ..+..  +.    ..++.+|||++|++++.+|+..|  .  ....+
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~-l~e~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~~~~e  150 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPL-LIENK--LT----ALCDRILVVDVSPQTQLARSAQR--D--NNNFE  150 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTT-TTTTT--CG----GGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEech-hhhcC--cH----hhCCEEEEEECCHHHHHHHHHHc--C--CCCHH
Confidence                   01111122222333335678889742 22111  11    23678999999999999999977  2  23455


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChH----HHHHHHHHhcCcc
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA----EVFDAVKAVFTPK  203 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e----e~~~~i~~~i~~~  203 (209)
                      .+.+++..    ..+..+.+.. .+ +++|++.+++    ++.++|.+.+...
T Consensus       151 ~~~~r~~~----q~~~~~~~~~-ad-~vIdn~~~~~~~~~~~~~~i~~~~~~~  197 (206)
T 1jjv_A          151 QIQRIMNS----QVSQQERLKW-AD-DVINNDAELAQNLPHLQQKVLELHQFY  197 (206)
T ss_dssp             HHHHHHHH----SCCHHHHHHH-CS-EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh----cCChHHHHHh-CC-EEEECCCCccccHHHHHHHHHHHHHHH
Confidence            56665543    1233333443 33 5677766999    9999998887543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.76  E-value=2.5e-16  Score=111.30  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      ..+.+|+|+|+|||||||+++.|+..+|..+++.|++....    ...+..... .....+        ......+...+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~   77 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL--------QALNDAAFAMQ   77 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHH--------HHHHHHHHHHH
Confidence            34679999999999999999999999999999987763210    001111100 000000        01122222222


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                      .  .+..+|+|...........+..   ..++ .+|||++|++++.+|+..|  +........+...+..+    .+.  
T Consensus        78 ~--~~~~~vi~~~~~~~~~~~~l~~---~~~~~~vv~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~----~~~--  144 (175)
T 1knq_A           78 R--TNKVSLIVCSALKKHYRDLLRE---GNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETL----QEP--  144 (175)
T ss_dssp             H--HCSEEEEECCCCSHHHHHHHHT---TCTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHC----CCC--
T ss_pred             h--cCCcEEEEeCchHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhc--cCCCCchHHHHHHHHhh----hCc--
Confidence            2  2567888853333444444433   2234 7999999999999999988  32222233333222111    110  


Q ss_pred             HHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          173 YYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       173 ~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      ++.. ...+++|++.+++++.++|.+.+.
T Consensus       145 ~~~~-~~~~~Id~~~~~~~~~~~i~~~l~  172 (175)
T 1knq_A          145 GADE-TDVLVVDIDQPLEGVVASTIEVIK  172 (175)
T ss_dssp             CTTC-TTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             ccCC-CCeEEEeCCCCHHHHHHHHHHHHh
Confidence            0222 236788888899999999998774

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.76  E-value=6.5e-18  Score=118.68  Aligned_cols=158  Identities=16%  Similarity=0.245  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-CCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-GKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      +.|+|+|+|||||||+++.|++.+++++++.|++.....  +....    +.+.. +..........++. .+.. .+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g~~~~----~~~~~~~~~~~~~~~~~~l~-~l~~-~~~~   72 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--GLSIP----QIFEKKGEAYFRKLEFEVLK-DLSE-KENV   72 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHH----HHHHHSCHHHHHHHHHHHHH-HHTT-SSSE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--CCCHH----HHHHHhChHHHHHHHHHHHH-HHhc-cCCe
Confidence            479999999999999999999999999999998877653  22222    11111 11000111122222 2221 2344


Q ss_pred             EEEeCC--CCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhchhHHHHHhh
Q 028388          101 FLIDGF--PRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       101 ~i~dg~--~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      ||.+|.  +........+.     .++.+|||++|++++.+|+..|. .++...  .+.+.+.+.   + .   ...+..
T Consensus        73 Vi~~g~~~~~~~~~~~~l~-----~~~~~i~l~~~~e~~~~R~~~r~-~r~~~~~~~~~i~~~~~---~-~---~~~~~~  139 (168)
T 2pt5_A           73 VISTGGGLGANEEALNFMK-----SRGTTVFIDIPFEVFLERCKDSK-ERPLLKRPLDEIKNLFE---E-R---RKIYSK  139 (168)
T ss_dssp             EEECCHHHHTCHHHHHHHH-----TTSEEEEEECCHHHHHHHCBCTT-CCBGGGSCGGGTHHHHH---H-H---HHHHTT
T ss_pred             EEECCCCEeCCHHHHHHHH-----cCCEEEEEECCHHHHHHHHhCCC-CCCCCcchHHHHHHHHH---H-H---HHHHHh
Confidence            444442  22233333332     26899999999999999998761 122211  222222221   1 1   122343


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                       ..+++ |++.+++++.++|.+.+..
T Consensus       140 -~~~~i-~~~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          140 -ADIKV-KGEKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             -SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred             -CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence             55666 7778999999999988864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.75  E-value=9.5e-17  Score=121.79  Aligned_cols=169  Identities=17%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHH--------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEV--------   84 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--------   84 (209)
                      +++|++|+|+|+|||||||+|+.|+ .+|+.+++.|++.+..+..+......+.+.+...     ..+....        
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            4568899999999999999999999 6999999999998776444333222222222110     0111100        


Q ss_pred             --------------HHHHHHHHHH---hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCC
Q 028388           85 --------------TIKLLQKAME---ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQG  147 (209)
Q Consensus        85 --------------~~~~i~~~~~---~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~  147 (209)
                                    +...+.+.+.   ......+|+||......   .+.    ..++.+|||++|++++.+|+..|  .
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~----~~~d~vI~l~a~~ev~~~Rl~~R--~  221 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ----SMVHEVWTVVIPETEAVRRIVER--D  221 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG----GGCSEEEEEECCHHHHHHHHHHH--H
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH----HhCCEEEEEcCCHHHHHHHHHHc--C
Confidence                          0111112221   11246899998642211   111    23689999999999999999987  2


Q ss_pred             CCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          148 REDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                        ..+.+.+.+++...    .+...++. ... ++||++.+++++.++|.+.+....
T Consensus       222 --g~s~e~~~~ri~~q----~~~~~~~~-~AD-~vIdn~~s~eel~~~I~~~l~~l~  270 (281)
T 2f6r_A          222 --GLSEAAAQSRLQSQ----MSGQQLVE-QSN-VVLSTLWESHVTQSQVEKAWNLLQ  270 (281)
T ss_dssp             --CCCHHHHHHHHHTS----CCHHHHHH-TCS-EEEECSSCHHHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHc----CChHhhHh-hCC-EEEECCCCHHHHHHHHHHHHHHHH
Confidence              22445555554332    22223332 233 567777799999999998876543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.75  E-value=4.6e-17  Score=119.18  Aligned_cols=168  Identities=18%  Similarity=0.207  Sum_probs=99.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHHH------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVTI------   86 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------   86 (209)
                      |++|++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+..     ...+....+.      
T Consensus         1 M~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~   79 (218)
T 1vht_A            1 MSLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFAN   79 (218)
T ss_dssp             -CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999998 99999999988877543333222333322211     0112211111      


Q ss_pred             --------H----HH----HHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCC
Q 028388           87 --------K----LL----QKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED  150 (209)
Q Consensus        87 --------~----~i----~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~  150 (209)
                              .    .+    ...+....+..+++|+ +......  +.    ..++.+|||++|++++.+|+..|  .  .
T Consensus        80 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~~----~~~d~vi~l~~~~e~~~~Rl~~R--~--~  148 (218)
T 1vht_A           80 PEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--LY----KKANRVLVVDVSPETQLKRTMQR--D--D  148 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--GG----GGCSEEEEEECCHHHHHHHHHHH--H--T
T ss_pred             HHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--cc----ccCCEEEEEECCHHHHHHHHHHc--C--C
Confidence                    1    11    1112221334556665 3222221  21    23789999999999999999987  2  2


Q ss_pred             CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      ...+.+.+++...    .+...+... .. +++|++.+++++.++|.+.+...
T Consensus       149 ~~~~~~~~~~~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~I~~~l~~~  195 (218)
T 1vht_A          149 VTREHVEQILAAQ----ATREARLAV-AD-DVIDNNGAPDAIASDVARLHAHY  195 (218)
T ss_dssp             CCHHHHHHHHHHS----CCHHHHHHH-CS-EEEECSSCTTSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhc----CChHHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            2344555544331    122222222 33 57777779999999998887654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.75  E-value=5e-17  Score=117.17  Aligned_cols=168  Identities=14%  Similarity=0.082  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (209)
                      .-|.++|.+||||||+++.|++ +|+++++.|.+.++.+..+......+.+.++.     ...+....+           
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            4699999999999999999988 99999999999988876665544455444432     122222222           


Q ss_pred             -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                 ...+.+.+.......+|+|. |...+.. .+..    .+|.+|+++||+++..+|+.+|  .  ..+.+
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~----~~D~vi~V~ap~e~r~~Rl~~R--d--g~s~e  158 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA----RCDRVLVVDCPVDTQIARVMQR--N--GFTRE  158 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH----HCSEEEEEECCHHHHHHHHHHH--H--CCCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc----cCCeEEEEECCHHHHHHHHHhc--C--CCCHH
Confidence                       22333333433445678885 4444411 2222    2789999999999999999988  2  34566


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcchhh
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKDEK  206 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~~~  206 (209)
                      .+.+++....    +..+... ..+ ++|+++ .+++++.++|.+++......
T Consensus       159 ea~~ri~~Q~----~~eek~~-~AD-~VIdN~~gsle~l~~qV~~l~~~~~~~  205 (210)
T 4i1u_A          159 QVEAIIARQA----TREARLA-AAD-DVIVNDAATPDALAVQVDALHQRYLAF  205 (210)
T ss_dssp             HHHHHHHHSC----CHHHHHH-TCS-EEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC----ChHHHHH-hCC-EEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence            6666654321    2233333 333 566777 89999999999888765543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.74  E-value=7.6e-17  Score=116.64  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHh----HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG----DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      ++|+|+|+|||||||+++.|+++++..++...    .+++..+...........          .......++.......
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~r~~~~~~~~~   70 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQ----------IYMLTARSKQLKQAKN   70 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHH----------HHHHHHHHHHHC----
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHH----------HHHHHHHHHHHHHhhc
Confidence            47999999999999999999999998776521    111211100000000000          0000111111101111


Q ss_pred             CCeEEEeCCCCCHHH---------------HH---H-HHHh--c-------CCCCcEEEEEecCHHHHHHHHhhccCCCC
Q 028388           98 NDKFLIDGFPRNEEN---------------RA---A-FEAV--T-------KIEPEFVLFFDCSEEEMERRILNRNQGRE  149 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~---------------~~---~-~~~~--~-------~~~~~~~i~L~~~~~~~~~R~~~r~~~~~  149 (209)
                      ...+|+|+++.+-.-               ..   . +...  .       ...|+.+|||++|++++.+|+.+|  +++
T Consensus        71 ~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R--~r~  148 (205)
T 2jaq_A           71 LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKR--GRS  148 (205)
T ss_dssp             --CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHH--TCH
T ss_pred             cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHc--CCh
Confidence            234999988754111               01   1 1111  1       156899999999999999999988  543


Q ss_pred             CCcH--HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          150 DDNV--ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       150 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      ....  ..+.+++..++..   ..+.+......+++|++.+++++.++|.+.+...
T Consensus       149 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          149 EELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSI  201 (205)
T ss_dssp             HHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred             hhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence            2211  1333444333332   2333432345788999889999999999887543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.73  E-value=6.7e-16  Score=109.81  Aligned_cols=161  Identities=16%  Similarity=0.125  Sum_probs=89.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee-cH---hHHHHHHHHcCCchHHHHHHHHHcCCCCCH-HHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL-SA---GDLLRAEIKSGSENGTMIQNMIKEGKIVPS-EVTIKLLQKAME   94 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~   94 (209)
                      +|++|+|+|+|||||||+++.|++.+++.++ +.   ++.+++.+..+...       +..  .... ......+...+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~-------~~~--~~~~~~~~~~~i~~~l~   74 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD-------PQE--HPMWIPLMLDALQYASR   74 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSC-------GGG--STTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccch-------hhh--hHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999888 43   12222221100000       000  0000 223444555444


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHH-h-cCCCCcEEEEEecCHHHHHHHHhhccCC-CCCCcHHHHHHHHHHHHhhchhHH
Q 028388           95 ESGNDKFLIDGFPRNEENRAAFEA-V-TKIEPEFVLFFDCSEEEMERRILNRNQG-REDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        95 ~~~~~~~i~dg~~~~~~~~~~~~~-~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      . .+..+|+|+..........+.. + ....+...|||++|++++.+|+..|  + ++ ...+.+..    +.+...+. 
T Consensus        75 ~-~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R--~~r~-~~~~~~~~----~~~~~~~~-  145 (183)
T 2vli_A           75 E-AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRD--GQPQ-VNVGTVED----RLNELRGE-  145 (183)
T ss_dssp             H-CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-------CCHHHHHH----HHHHHTSG-
T ss_pred             h-CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhc--cccc-hhHHHHHH----HHHhhccc-
Confidence            2 3677889976655433322211 1 1212235699999999999999988  3 22 22333322    22222222 


Q ss_pred             HHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcch
Q 028388          172 QYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       172 ~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~~  204 (209)
                          ... . ++|++ .+++++.++|.+.+....
T Consensus       146 ----~~~-~-~Id~~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          146 ----QFQ-T-HIDTAGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             ----GGC-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred             ----ccc-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence                122 3 77876 799999999999987654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.73  E-value=1.6e-17  Score=116.71  Aligned_cols=154  Identities=15%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK-EGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      .+|+|+|+|||||||+++.|++++|+++++.|++.+...  +....    +.+. .+.....+....++.....  .+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~~~~----~~~~~~g~~~~~~~~~~~l~~~~~--~~~~   79 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GLSVR----EIFEELGEDNFRMFEKNLIDELKT--LKTP   79 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHH----HHHHHTCHHHHHHHHHHHHHHHHT--CSSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CCCHH----HHHHHhCHHHHHHHHHHHHHHHHh--cCCC
Confidence            579999999999999999999999999999999887653  22221    2121 1111111222233333322  2233


Q ss_pred             -EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhhchhHHHHHh
Q 028388          101 -FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus       101 -~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                       ++..|  ++.. ..        ...++.+|||++|++++.+|+..|. ..++... .+.+.+.    ....   ...|.
T Consensus        80 ~Vi~~g~g~~~~-~~--------l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~----~~~r---~~~~~  143 (168)
T 1zuh_A           80 HVISTGGGIVMH-EN--------LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKEL----FEKR---QALYE  143 (168)
T ss_dssp             CEEECCGGGGGC-GG--------GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHH----HHHH---HHHHH
T ss_pred             EEEECCCCEech-hH--------HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHH----HHHH---HHHHH
Confidence             33323  2222 11        1236899999999999999998761 1223222 2223222    2211   12233


Q ss_pred             hcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          176 AKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       176 ~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      .... +++|++.++++++++|.+.|
T Consensus       144 ~~a~-~~Id~~~~~e~~~~~I~~~l  167 (168)
T 1zuh_A          144 KNAS-FIIDARGGLNNSLKQVLQFI  167 (168)
T ss_dssp             HTCS-EEEEGGGCHHHHHHHHHHC-
T ss_pred             HHCC-EEEECCCCHHHHHHHHHHHh
Confidence            3333 45666559999999998765

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.72  E-value=7.6e-17  Score=116.78  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC-----CCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------   85 (209)
                      ++|+|+|++||||||+++.|++ +|+++++.|++++..+..+......+.+.+...     .......+           
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 999999999988765332222222222222110     01111111           


Q ss_pred             -----------HHHHHHHHHhcCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           86 -----------IKLLQKAMEESGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                                 ...+...+....+ ..+|+|+.......   +.    ..++.+|||++|++++.+|+..|  +.   ..
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~---~~----~~~~~~i~l~~~~e~~~~Rl~~R--~~---~~  148 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKG---TY----KNYDKLIVVYAPYEVCKERAIKR--GM---SE  148 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTT---CG----GGSSEEEEECCCHHHHHHHHHHT--CC---CH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCC---ch----hhCCEEEEEECCHHHHHHHHHHc--CC---CH
Confidence                       1111222222233 68899984321111   11    12679999999999999999987  42   33


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.+.+++...    .+... +..... +++|++.+++++.++|.+.+...
T Consensus       149 ~~~~~~~~~~----~~~~~-~~~~ad-~vId~~~~~~~~~~~i~~~l~~~  192 (204)
T 2if2_A          149 EDFERRWKKQ----MPIEE-KVKYAD-YVIDNSGSIEETYKQVKKVYEEL  192 (204)
T ss_dssp             HHHHHHHTTS----CCHHH-HGGGCS-EECCCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC----CChhH-HHhcCC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            4455543332    12222 233333 57888889999999999887553

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.72  E-value=5.2e-17  Score=114.91  Aligned_cols=159  Identities=16%  Similarity=0.219  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|+|+|||||||+++.|++.+++++++.|++.+...  +......+..   .+..........++.. +.  ....+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~~~~~~~~---~g~~~~~~~~~~~~~~-l~--~~~~~   76 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQ---KRENFFREQEQKMADF-FS--SCEKA   76 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHH---HCHHHHHHHHHHHHHH-HT--TCCSE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCCHHHHHHH---cCHHHHHHHHHHHHHH-HH--ccCCE
Confidence            369999999999999999999999999999988877542  2222111110   1111111111222332 22  23455


Q ss_pred             EEe-CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhcc-CCCCCCc-HHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          102 LID-GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-QGREDDN-VETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       102 i~d-g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      |++ |...... .. +..     .+.+|||++|++++.+|+..|. ..++... .+.+.+    .....   ..+|....
T Consensus        77 vi~~g~~~~~~-~~-l~~-----~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~----~~~~r---~~~y~~~~  142 (175)
T 1via_A           77 CIATGGGFVNV-SN-LEK-----AGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKK----LYNER---LSKYEQKA  142 (175)
T ss_dssp             EEECCTTGGGS-TT-GGG-----GCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHH----HHHHH---HHHHHHHC
T ss_pred             EEECCCCEehh-hH-Hhc-----CCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHH----HHHHH---HHHHHhcC
Confidence            555 5322211 11 222     3589999999999999998762 2343332 333332    22211   22333323


Q ss_pred             cEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388          179 KVRKIDAA-KPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       179 ~~~~id~~-~~~ee~~~~i~~~i~~~  203 (209)
                       .+.+|++ .+++++++.|.+.+..-
T Consensus       143 -~~~Idt~~~~~eev~~~I~~~l~~~  167 (175)
T 1via_A          143 -NFILNIENKNIDELLSEIKKVIKEG  167 (175)
T ss_dssp             -SEEEECTTCCHHHHHHHHHHHHC--
T ss_pred             -CEEEECCCCCHHHHHHHHHHHHHhc
Confidence             3677776 79999999999988653

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.72  E-value=3.2e-16  Score=115.23  Aligned_cols=171  Identities=18%  Similarity=0.244  Sum_probs=99.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHHHc-----------------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMIKE-----------------   76 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~~~-----------------   76 (209)
                      .+++|+|+|++||||||+++.|++.+|+++++.|++++....    .+....  .........                 
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE   83 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence            457899999999999999999999999999999999986542    232221  111111110                 


Q ss_pred             CCCCCH-----------------HHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388           77 GKIVPS-----------------EVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (209)
Q Consensus        77 ~~~~~~-----------------~~~~~~i~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~  138 (209)
                      +..+++                 +.+...+...... ..+.++++||.....       . ....++++|||+++++++.
T Consensus        84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-------~-~~~~~d~~i~l~~~~e~~~  155 (227)
T 1cke_A           84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-------V-VFPDAPVKIFLDASSEERA  155 (227)
T ss_dssp             TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-------C-CCTTCSEEEEEECCHHHHH
T ss_pred             CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-------e-EecCCCEEEEEeCCHHHHH
Confidence            111101                 1122222222221 236789999863211       1 2335789999999999999


Q ss_pred             HHHhhc--cCCCCCCcHHHHHHHHH-----HHHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388          139 RRILNR--NQGREDDNVETIRKRFK-----VFLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       139 ~R~~~r--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~  203 (209)
                      +|+..+  .+++.. ..+...+.+.     .+.....++    ......+++|++ .++++++++|.+.+...
T Consensus       156 ~R~~~~l~~rg~~~-~~~~~~~~i~~R~~~~~~~~~~pl----~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~  223 (227)
T 1cke_A          156 HRRMLQLQVKGFSV-NFERLLAEIKERDDRDRNRAVAPL----VPAADALVLDSTTLSIEQVIEKALQYARQK  223 (227)
T ss_dssp             HHHHHHHHHHTCCC-CHHHHHHHHC-------------C----CCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccC-CHHHHHHHHHHHHHhhhhhcccCc----cCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            995432  124421 2333333222     121111121    112234688887 79999999999888653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.71  E-value=1.1e-15  Score=110.94  Aligned_cols=163  Identities=18%  Similarity=0.196  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCch--HHHHHHHHH-----------------cCCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSEN--GTMIQNMIK-----------------EGKI   79 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~--~~~~~~~~~-----------------~~~~   79 (209)
                      +|+|+|++||||||+++.|++.+|+++++.|++.+....    .+...  ...+.....                 .+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   83 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED   83 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence            899999999999999999999999999999998876532    12110  111111111                 1111


Q ss_pred             CC----H-------------HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388           80 VP----S-------------EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (209)
Q Consensus        80 ~~----~-------------~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~  142 (209)
                      ++    .             +.+...+........ .++|+||....  .     . ....++++|||++|++++.+|+.
T Consensus        84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~--~-----~-~~~~~d~~i~l~a~~e~~~~R~~  154 (208)
T 3ake_A           84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMG--T-----A-VFPEAAHKFYLTASPEVRAWRRA  154 (208)
T ss_dssp             CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHHHHH
T ss_pred             CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEcccee--E-----E-EecCCcEEEEEECCHHHHHHHHH
Confidence            10    0             112222222222233 68899986432  0     1 22347899999999999999998


Q ss_pred             hccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCC-ChHHHHHHHHHhcC
Q 028388          143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAK-PVAEVFDAVKAVFT  201 (209)
Q Consensus       143 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~ee~~~~i~~~i~  201 (209)
                      .|  ..  ...+.+.+.+........   ..+......+++|++. +++++.++|.+.+.
T Consensus       155 ~r--~~--~~~~~~~~~~~~R~~~~~---~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          155 RE--RP--QAYEEVLRDLLRRDERDK---AQSAPAPDALVLDTGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HT--SS--SCHHHHHHHHHHHHHTC-----CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred             hh--cc--cCHHHHHHHHHHHHHHHh---hcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence            87  32  333444444432111110   0002223447788875 99999999988764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.71  E-value=9.6e-18  Score=125.47  Aligned_cols=175  Identities=19%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc----------eecHhHHHHHHHHcCCchHHHHHHHHH-----cCCCC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIK-----EGKIV   80 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   80 (209)
                      +...+|++|+|+|+|||||||+|+.|++.+|++          +++.|++++..     ..+........     .....
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~-----~~~~~~~~~~g~~~f~~~~~~   91 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL-----TSEQKAKALKGQFNFDHPDAF   91 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC-----CHHHHHHHHTTCSCTTSGGGB
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc-----ChhhhhhhccCCCCCCCcchh
Confidence            445578899999999999999999999999988          78998887521     00100011111     11122


Q ss_pred             CHHHHHHHHHHHHHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHH
Q 028388           81 PSEVTIKLLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME  138 (209)
Q Consensus        81 ~~~~~~~~i~~~~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~  138 (209)
                      ..+.+...+......                      .....+|+||.+.....  .+..    .++.+|||++|++++.
T Consensus        92 d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~----~~d~vi~l~~~~e~~~  165 (252)
T 1uj2_A           92 DNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRL  165 (252)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHH
T ss_pred             hHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH----hcCeeEEEeCCHHHHH
Confidence            223334445444310                      13468999996543221  1222    1578999999999999


Q ss_pred             HHHhhcc-CCCCCCcHHHHHHHHHHHHhhchhHHH----HHhhcCcEEE---EcCCCChHHHHHHHHHhcCcchh
Q 028388          139 RRILNRN-QGREDDNVETIRKRFKVFLESSLPVVQ----YYEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       139 ~R~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      +|+..|. ..+ ....+.+.+++...   ..+.+.    .+.....+++   +|++.+++++.++|.+.+.....
T Consensus       166 ~R~~~R~~~~r-g~~~e~i~~~~~~~---~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~  236 (252)
T 1uj2_A          166 SRRVLRDISER-GRDLEQILSQYITF---VKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPS  236 (252)
T ss_dssp             HHHHHHHHHHS-CCCHHHHHHHHHHT---HHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhhh-CCCHHHHHHHHHHh---ccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchh
Confidence            9998871 111 12445555443321   111111    1222334433   37777999999999998866543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.70  E-value=8.5e-17  Score=114.30  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=72.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      +.+.++.+|+|+|+|||||||+++.|++.+++.+++.|++++.. ......+...     .......+.+...+...+..
T Consensus         6 ~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   79 (180)
T 3iij_A            6 PEFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-QLYDGYDEEY-----DCPILDEDRVVDELDNQMRE   79 (180)
T ss_dssp             CTTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-TCEEEEETTT-----TEEEECHHHHHHHHHHHHHH
T ss_pred             cccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-chhhhhhhhh-----cCccCChHHHHHHHHHHHhc
Confidence            34456778999999999999999999999999999999987765 1111110000     00112233344455555543


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                         .++|+|......-        ....++.+|||++|++++.+|+..|
T Consensus        80 ---g~~vv~~~~~~~~--------~~~~~~~vi~L~~~~e~l~~R~~~r  117 (180)
T 3iij_A           80 ---GGVIVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR  117 (180)
T ss_dssp             ---CCEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             ---CCEEEEechhhhc--------chhcCCEEEEEECCHHHHHHHHHHc
Confidence               3456675431110        0012679999999999999999988

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.69  E-value=4.6e-16  Score=110.92  Aligned_cols=114  Identities=20%  Similarity=0.350  Sum_probs=73.7

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHH-hCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCC---CHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIV---PSEVTIKLLQ   90 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~-l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~   90 (209)
                      +|.+.++++|+|+|+|||||||+++.|++. +|+++++.|++.++. ......+..    +.. ...   ..+.....+.
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-~~~~~~~~~----~~~-~~~~r~~~~~~~~~l~   77 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDTE----LDT-HIIEEKDEDRLLDFME   77 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC----------C-CCCCHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-hhhhhHHHH----hhh-cccCCCCHHHHHHHHH
Confidence            455667889999999999999999999999 799999999988764 111122211    111 112   2223344454


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           91 KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ..+..  ..++++|.....     .+..   ..++.+|||++|++++.+|+..|
T Consensus        78 ~~~~~--~g~~vi~~~~~~-----~~~~---~~~~~vi~l~~~~e~~~~Rl~~R  121 (184)
T 1y63_A           78 PIMVS--RGNHVVDYHSSE-----LFPE---RWFHMVVVLHTSTEVLFERLTKR  121 (184)
T ss_dssp             HHHTS--SSEEEEECSCCT-----TSCG---GGCSEEEEEECCHHHHHHHHHHT
T ss_pred             HHHhc--cCCEEEeCchHh-----hhhh---ccCCEEEEEECCHHHHHHHHHhC
Confidence            44422  346778864321     1111   12678999999999999999988

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.69  E-value=8e-17  Score=113.63  Aligned_cols=161  Identities=14%  Similarity=0.234  Sum_probs=87.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      +.+|+|+|+|||||||+++.|+..+++.+++.|++.+...  +......+... .  ..........++.....   ...
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~-g--~~~~~~~~~~~l~~l~~---~~~   75 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE-G--EEGFRDREEKVINELTE---KQG   75 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH-H--HHHHHHHHHHHHHHHHT---SSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH-h--HHHHHHHHHHHHHHHHh---CCC
Confidence            5689999999999999999999999999999988776542  22222211110 0  00000011122332222   234


Q ss_pred             EEEe---CCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCC--CCCCc-HHHHHHHHHHHHhhchhHHHH
Q 028388          101 FLID---GFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQG--REDDN-VETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus       101 ~i~d---g~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~  173 (209)
                      +++.   +.+........+..     +++++||+++++++.+|+..| .+.  ...+. .+.+...    .....+   .
T Consensus        76 ~v~~~~~~~~~~~~~~~~l~~-----~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~----~~~r~~---~  143 (173)
T 1kag_A           76 IVLATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEAL----ANERNP---L  143 (173)
T ss_dssp             EEEECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHH----HHHHHH---H
T ss_pred             eEEECCCeEEecHHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH----HHHHHH---H
Confidence            5553   23223333333333     467999999999999999887 111  11122 3333332    221112   2


Q ss_pred             HhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          174 YEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       174 ~~~~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      |.... .+++|++ .++++++++|.+.+..
T Consensus       144 ~~~~a-~~~id~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          144 YEEIA-DVTIRTDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             HHHHC-SEEC-----CHHHHHHHHHHHHC-
T ss_pred             HHhhC-CEEEECCCCCHHHHHHHHHHHHHh
Confidence            33333 3567775 7999999999988754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.69  E-value=1.1e-15  Score=117.04  Aligned_cols=140  Identities=19%  Similarity=0.260  Sum_probs=89.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-cCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-SGN   98 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~   98 (209)
                      |++|+|+|+|||||||+++.|++++ ++.+++.| .++..+..... +.. ..+...............+...+.. ..+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            4789999999999999999999985 99999997 55555433111 000 0000000000112223344444421 347


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHh
Q 028388           99 DKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE  165 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~  165 (209)
                      ..+|+|+++....+...+..+  ....+..+|||++|++++.+|+..|  +....+.+.+.+++..|..
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~e~i~~~~~~~~~  145 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMRE  145 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC--GGGCCCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc--cCCCCCHHHHHHHHHHHhc
Confidence            899999998887666655542  2223457999999999999999998  4334566777777666654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.68  E-value=1.4e-16  Score=115.62  Aligned_cols=167  Identities=19%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHHcCCchHHHHHHHHHcC---CCCCHHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG---KIVPSEVTIKLLQKAME   94 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~   94 (209)
                      .++.+|+|+|+|||||||+++.|++.+ ++.+++.|+++... .... ...   ..+...   ..+....+...+...+.
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~-~~~~-~~~---~~~~~~~~~~~~~~~~l~~~i~~~l~   93 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE-SEIE-TDK---NGFLQYDVLEALNMEKMMSAISCWME   93 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG-GGSC-BCT---TSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH-hHhh-ccc---cCCChhHHHHHhHHHHHHHHHHHHHh
Confidence            456799999999999999999999988 89999998876422 1000 000   000000   00112222333333322


Q ss_pred             h-------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHH-
Q 028388           95 E-------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKR-  159 (209)
Q Consensus        95 ~-------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~-  159 (209)
                      .             .....+|+||+.....  ..    ....++.++|++++++++.+|+..|  +...+. ...+..+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~----~~~~~d~~i~l~~~~~~~~~R~~~R--~~~~e~~~~~~~~~~  165 (207)
T 2qt1_A           94 SARHSVVSTDQESAEEIPILIIEGFLLFNY--KP----LDTIWNRSYFLTIPYEECKRRRSTR--VYQPPDSPGYFDGHV  165 (207)
T ss_dssp             HHTTSSCCC-----CCCCEEEEECTTCTTC--GG----GTTTCSEEEEEECCHHHHHHHHHHS--CCSSCCCTTHHHHTH
T ss_pred             CCCCCCcCCCeeecCCCCEEEEeehHHcCc--HH----HHHhcCeeEEEECCHHHHHHHHHHc--CCCccchHHHHHHHH
Confidence            1             1246899999653211  11    1235789999999999999999877  432221 2222221 


Q ss_pred             HHHHHhhchhHHHHHhhc-CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          160 FKVFLESSLPVVQYYEAK-GKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...|.    ...+.+... ..++.+|++.+++++.++|.+.+..
T Consensus       166 ~~~~~----~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          166 WPMYL----KYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HHHHH----HHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             hHHHH----HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence            11121    122333433 4677899999999999999998865

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.68  E-value=3.2e-15  Score=107.88  Aligned_cols=168  Identities=13%  Similarity=0.148  Sum_probs=94.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchH-HHHHHHHHcCC-CC------------CHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGK-IV------------PSEVTI   86 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~------------~~~~~~   86 (209)
                      .++|.|.|++||||||+++.|+++||+++++ +++++..... .... ..+...-.... +.            ..+.+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~-~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKD-GRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIA   83 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHh-cCCCHHHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence            4689999999999999999999999999999 7877653211 1111 11111000000 00            011111


Q ss_pred             HHHHHHHHh-c--CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           87 KLLQKAMEE-S--GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        87 ~~i~~~~~~-~--~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                      ......+.. .  ...++|++|...     ..+.  ......+.|||++|++++.+|+.++. +   .+.+...+.+...
T Consensus        84 ~~~~~~i~~la~~~~~~~Vi~Gr~g-----~~vl--~~~~~~~~V~L~A~~e~r~~R~~~~~-~---~~~~~~~~~i~~~  152 (201)
T 3fdi_A           84 IRQFNFIRKKANEEKESFVIVGRCA-----EEIL--SDNPNMISAFILGDKDTKTKRVMERE-G---VDEKTALNMMKKM  152 (201)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEESTTH-----HHHT--TTCTTEEEEEEEECHHHHHHHHHHHH-T---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEECCc-----chhc--CCCCCeEEEEEECCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence            222222221 1  246788887531     1111  22223589999999999999998761 1   2334444444443


Q ss_pred             HhhchhHHHHH-------hhcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYY-------EAKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~-------~~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      .+...+.+..+       .....+ ++|+ ..+++++++.|...++.
T Consensus       153 d~~R~~~y~~~~~~~~~~~~~~dl-~Idt~~l~~eevv~~I~~~i~~  198 (201)
T 3fdi_A          153 DKMRKVYHNFYCESKWGDSRTYDI-CIKIGKVDVDTATDMIIKYIDS  198 (201)
T ss_dssp             HHHHHHHHHHHCSSCTTBGGGCSE-EEEESSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCCcccCCE-EEECCCCCHHHHHHHHHHHHHH
Confidence            33333333333       111344 5555 67999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.67  E-value=5e-16  Score=115.49  Aligned_cols=168  Identities=17%  Similarity=0.181  Sum_probs=99.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      +.+|+|+|++||||||+++.|++.+|+.+++.|.+++... .+......+..   .+.....+.....+...... ....
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~i~~i~~~---~ge~~fr~~e~~~l~~l~~~-~~~~  122 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTSVAEIFEH---FGESVFREKETEALKKLSLM-YHQV  122 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH-CSSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCccHHHHHHH---hCcHHHHHHHHHHHHHHHhh-cCCc
Confidence            6789999999999999999999999999999998887763 22223222221   12222222223344444332 1345


Q ss_pred             EEEeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCC-------cHHHHHHHHHHHHhhchhH
Q 028388          101 FLIDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDD-------NVETIRKRFKVFLESSLPV  170 (209)
Q Consensus       101 ~i~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~-------~~~~~~~~~~~~~~~~~~~  170 (209)
                      +|.+|  .+........+.      .+++|||++|++++.+|+.++ ...|+..       ..+...+++....+...++
T Consensus       123 Via~GgG~v~~~~~~~~l~------~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l  196 (250)
T 3nwj_A          123 VVSTGGGAVIRPINWKYMH------KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA  196 (250)
T ss_dssp             EEECCGGGGGSHHHHHHHT------TSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCCeecCHHHHHHHh------CCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence            55554  433333333321      268999999999999999863 1122211       1122344555555544444


Q ss_pred             HHHHhhcCcEEE-----------EcC-CCChHHHHHHHHHhcCcc
Q 028388          171 VQYYEAKGKVRK-----------IDA-AKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       171 ~~~~~~~~~~~~-----------id~-~~~~ee~~~~i~~~i~~~  203 (209)
                         |.... +++           +|+ +.+++++++.|.+.+...
T Consensus       197 ---Y~~ad-~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~  237 (250)
T 3nwj_A          197 ---YTKAS-ARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY  237 (250)
T ss_dssp             ---HTTSS-EEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred             ---HhhCC-EEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence               44433 433           254 579999999999887654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.67  E-value=2.6e-15  Score=108.48  Aligned_cols=165  Identities=21%  Similarity=0.231  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc---CCCCCHHHH---------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE---GKIVPSEVT---------   85 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------   85 (209)
                      ..++++|+|+|++||||||+++.|++. |+.+++.|++++... .+..  ..+...+..   ...+....+         
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~   80 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE   80 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence            456789999999999999999999998 999999999887764 2111  111111100   011111111         


Q ss_pred             -----HHHHH-----HHHHh--cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc
Q 028388           86 -----IKLLQ-----KAMEE--SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDN  152 (209)
Q Consensus        86 -----~~~i~-----~~~~~--~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~  152 (209)
                           .....     ..+..  .. +..+|+|+. .....  .+.    ..++.+|||++|++++.+|+..|  .  ...
T Consensus        81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~~----~~~d~~i~l~~~~e~~~~R~~~R--~--~~~  149 (203)
T 1uf9_A           81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GWE----GRLHGTLLVAAPLEERVRRVMAR--S--GLS  149 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TCG----GGSSEEEEECCCHHHHHHHHHTT--T--CCT
T ss_pred             HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cch----hhCCEEEEEECCHHHHHHHHHHc--C--CCC
Confidence                 10111     11111  12 578889873 21111  111    23689999999999999999977  2  222


Q ss_pred             HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          153 VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .+.+..++...    .+...+... .. +++|++.+++++.++|.+.+...
T Consensus       150 ~~~~~~~i~~~----~~~~~~~~~-ad-~vId~~~~~~~~~~~i~~~~~~~  194 (203)
T 1uf9_A          150 REEVLARERAQ----MPEEEKRKR-AT-WVLENTGSLEDLERALKAVLAEL  194 (203)
T ss_dssp             THHHHHHHTTS----CCHHHHHHH-CS-EEECCSSHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHC----CChhHHHHh-CC-EEEECCCCHHHHHHHHHHHHHHH
Confidence            33444443321    122222232 33 47888779999999999887654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.66  E-value=5.3e-15  Score=108.51  Aligned_cols=176  Identities=18%  Similarity=0.239  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCc--hHHHHHHHHHcCC-------------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSE--NGTMIQNMIKEGK-------------   78 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~-------------   78 (209)
                      +.+|++|+|.|+|||||||+++.|++.+|+.+++.|.+++...    ..+-.  ....+.+......             
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~   85 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF   85 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence            3467899999999999999999999999999999999988753    22221  1122222222100             


Q ss_pred             ----CCC-----------------HHHHHHHHHHHHHh-cCC-CeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388           79 ----IVP-----------------SEVTIKLLQKAMEE-SGN-DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (209)
Q Consensus        79 ----~~~-----------------~~~~~~~i~~~~~~-~~~-~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~  135 (209)
                          .+.                 ...+...+...-.. ... .++|+||-.....        .....++.|||++|++
T Consensus        86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~--------V~pda~lkifl~A~~e  157 (233)
T 3r20_A           86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV--------VLPDADVKIFLTASAE  157 (233)
T ss_dssp             ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC--------CCTTCSEEEEEECCHH
T ss_pred             ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE--------EcCCCCEEEEEECCHH
Confidence                000                 01111222111111 124 6788887311000        1233578999999999


Q ss_pred             HHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh-----hchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCcchh
Q 028388          136 EMERRILNR-NQGREDDNVETIRKRFKVFLE-----SSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       136 ~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~~~~  205 (209)
                      ++.+|..++ ...+.....+...+.+.....     .+.|+    ......+++|+ ..+++++++.|..++.....
T Consensus       158 ~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl----~~~~dal~IDTs~l~iee~v~~I~~~i~~~~~  230 (233)
T 3r20_A          158 ERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPL----RAADDALVVDTSDMDQAQVIAHLLDLVTAQAG  230 (233)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCC----SCCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhcccccc----ccccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence            999998764 111223344555444433222     11111    11223256665 67999999999999987653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.65  E-value=3.2e-15  Score=108.28  Aligned_cols=165  Identities=15%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----------------------ceecHhHHHHHHHHcCCchHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----------------------THLSAGDLLRAEIKSGSENGTMIQNM   73 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----------------------~~i~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
                      -|.++++|+|+|+|||||||+++.|++.++.                       .+++.+. +...+..+....     +
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~-~~~~~~~~~~~~-----~   81 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDD-FERKLKEGQFLE-----F   81 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHH-HHHHHHTTCEEE-----E
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHH-HHHHHHcCCCEE-----e
Confidence            4667889999999999999999999998842                       1223322 222212111000     0


Q ss_pred             H-HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCC-CcEEEEEe-cCHHHHHHHHhhccCCCCC
Q 028388           74 I-KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE-PEFVLFFD-CSEEEMERRILNRNQGRED  150 (209)
Q Consensus        74 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~-~~~~i~L~-~~~~~~~~R~~~r~~~~~~  150 (209)
                      . ..+..+.  .....+...+.  .+..+|+|..+.   ....+.. .... ...+|||+ +|++++.+|+..|  ++  
T Consensus        82 ~~~~~~~~~--~~~~~i~~~l~--~g~~vi~d~~~~---~~~~l~~-~~~~~~~~~i~l~~~s~e~l~~Rl~~R--~~--  149 (204)
T 2qor_A           82 DKYANNFYG--TLKSEYDLAVG--EGKICLFEMNIN---GVKQLKE-SKHIQDGIYIFVKPPSIDILLGRLKNR--NT--  149 (204)
T ss_dssp             EEETTEEEE--EEHHHHHHHHH--TTCEEEEECCHH---HHHHHHH-CSSCSCCEEEEEECSCHHHHHHHHHTC--TT--
T ss_pred             HHhCCCeec--CCHHHHHHHHH--cCCeEEEEECHH---HHHHHHH-hcCCCCeEEEEEcCCCHHHHHHHHHHc--CC--
Confidence            0 0000000  00223444444  578999997542   2233333 2221 23789998 9999999999987  43  


Q ss_pred             CcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          151 DNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +..+.+.+++...+....+.   +......+++| + ++++++++|.+.|....
T Consensus       150 ~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~n-~-~~e~~~~~i~~~i~~~~  198 (204)
T 2qor_A          150 EKPEEINKRMQELTREMDEA---DKVGFNYFIVN-D-DLARTYAELREYLLGSY  198 (204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH---HHHTCSEEEEC-S-SHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHh---hhccCcEEEEC-c-CHHHHHHHHHHHHHHHh
Confidence            35567777766554322110   33344455444 4 89999999998886543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.65  E-value=3.1e-16  Score=117.94  Aligned_cols=79  Identities=14%  Similarity=0.232  Sum_probs=51.8

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhh------chhHHHHHhhcCcEEEEcCCCChHHHH
Q 028388          122 IEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLES------SLPVVQYYEAKGKVRKIDAAKPVAEVF  193 (209)
Q Consensus       122 ~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~id~~~~~ee~~  193 (209)
                      ..|+++|||++|++++.+|+.+|  +++.+  ....+.+++...++.      ..+.+..+.. ..+++||++.++++++
T Consensus       173 ~~pd~vi~L~~~~e~~~~Ri~~R--~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~  249 (263)
T 1p5z_B          173 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKY  249 (263)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHH
T ss_pred             CCCCeEEEEECCHHHHHHHHHhc--CCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHH
Confidence            47999999999999999999988  54321  122333333322221      1111222222 4588999999999999


Q ss_pred             HHHHHhcCcc
Q 028388          194 DAVKAVFTPK  203 (209)
Q Consensus       194 ~~i~~~i~~~  203 (209)
                      +.|.+.|...
T Consensus       250 ~~I~~~l~~~  259 (263)
T 1p5z_B          250 ESLVEKVKEF  259 (263)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888653

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.65  E-value=2.6e-14  Score=104.43  Aligned_cols=170  Identities=16%  Similarity=0.229  Sum_probs=97.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----------C-----------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----------G-----------   77 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----------   77 (209)
                      ++++|.|.|++||||||+++.|++++|+++++ ++++........-....+...-..           +           
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence            35799999999999999999999999999999 577666544311000111100000           0           


Q ss_pred             --CCCCHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHH---HhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC
Q 028388           78 --KIVPSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFE---AVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD  151 (209)
Q Consensus        78 --~~~~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~---~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~  151 (209)
                        ....++.+.....+.+... ...++|++|...     ..+.   . . ....+.|||++|++++.+|+.++. ++   
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grgg-----g~vl~~~~-~-~~~~~~VfL~A~~e~r~~Ri~~~~-~~---  160 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAA-----GYVLDQDE-D-IERLIRIFVYTDKVKKVQRVMEVD-CI---  160 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTH-----HHHHHHCT-T-CCEEEEEEEECCHHHHHHHHHHHH-TC---
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCc-----chhccccc-C-CCCeEEEEEECCHHHHHHHHHHhc-CC---
Confidence              0011122222222222221 135688887531     1222   2 1 122579999999999999998761 22   


Q ss_pred             cHHHHHHHHHHHHhhchhHHHHHh-------hcCcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          152 NVETIRKRFKVFLESSLPVVQYYE-------AKGKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      +.+...+.+....+...+.+..|-       ....+ +||+ ..+++++++.|...++.
T Consensus       161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl-~IdT~~l~~eevv~~I~~~i~~  218 (223)
T 3hdt_A          161 DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDL-PINTTKLTLEETAELIKAYIRL  218 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSE-EEECTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeE-EEECCCCCHHHHHHHHHHHHHH
Confidence            234555555554444444444331       12344 5565 56999999999988754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.65  E-value=1.4e-15  Score=113.61  Aligned_cols=176  Identities=16%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH----HcCCch--HHHHHHHHHcCC--------------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI----KSGSEN--GTMIQNMIKEGK--------------   78 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~--------------   78 (209)
                      .++.+|.|.|++||||||+++.|+++||+.+++.|.+++...    ..+...  ..........-.              
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            456799999999999999999999999999999999986643    222111  001111111000              


Q ss_pred             ---CC-----------------CHHHHHHHHHHHHHhc-CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388           79 ---IV-----------------PSEVTIKLLQKAMEES-GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (209)
Q Consensus        79 ---~~-----------------~~~~~~~~i~~~~~~~-~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~  137 (209)
                         .+                 ..+.+...+....... .+.++|+||......        .....++.|||++|++++
T Consensus       105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~--------v~~~~~~~ifl~A~~e~r  176 (252)
T 4e22_A          105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI--------VFPDAPVKIFLDASSQER  176 (252)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC--------CSTTCSEEEEEECCHHHH
T ss_pred             CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee--------ecCCCCEEEEEECCHHHH
Confidence               00                 0111223333332222 366788887321100        122367899999999999


Q ss_pred             HHHHhhc-cCCCCCCcHHHHHHHHHHHH--hhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCcc
Q 028388          138 ERRILNR-NQGREDDNVETIRKRFKVFL--ESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       138 ~~R~~~r-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~~  203 (209)
                      .+|+.++ ...+.....+...+.+....  +..+. ...+......++||++ .++++++++|.+++...
T Consensus       177 ~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~-~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~  245 (252)
T 4e22_A          177 AHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRS-VAPLVPAADALVLDSTSMSIEQVIEQALAYAQRI  245 (252)
T ss_dssp             HHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc-ccchhccCCeEEEECcCCCHHHHHHHHHHHHHHH
Confidence            9998753 11122334444444432211  11111 0111222234667764 59999999999888654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.63  E-value=9.5e-15  Score=116.57  Aligned_cols=103  Identities=22%  Similarity=0.265  Sum_probs=78.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      +.+++|.+|+|+|+|||||||+++.|++.+++.+++.|++-        .                .......+...+. 
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~-  307 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALR-  307 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHH-
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHh-
Confidence            34567899999999999999999999999999999997740        0                1112334444444 


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                       .+..+|+|+.+.....+..+..+  ....+..+|||+++.+++.+|+..|
T Consensus       308 -~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R  357 (416)
T 3zvl_A          308 -QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR  357 (416)
T ss_dssp             -TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred             -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence             47889999988887766665543  2233457999999999999999999

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.62  E-value=3.2e-14  Score=100.65  Aligned_cols=162  Identities=14%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHHHHcCCchHHHHHH-HH-HcCCCC-CH---HHH---HHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAEIKSGSENGTMIQN-MI-KEGKIV-PS---EVT---IKLL   89 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~---~~~---~~~i   89 (209)
                      |++|+|+|+|||||||+++.|+++++..++  +.|++.... ...  ....... .+ ..+... ..   ...   ...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM-PLK--MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGV   79 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS-CGG--GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc-chh--hccchhhccccCCCccccchhHHHHHHHHHHHH
Confidence            578999999999999999999999987655  466554321 210  0000000 00 000000 00   111   1122


Q ss_pred             HHHHHhcCCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhch
Q 028388           90 QKAMEESGNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSL  168 (209)
Q Consensus        90 ~~~~~~~~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~  168 (209)
                      .....  .+..+|+|+... .......+.+.....+..+|||++|.+++.+|+..|  +......  ...   .+ +   
T Consensus        80 ~~~~~--~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r--~~~~~~~--~~~---~~-~---  146 (178)
T 1qhx_A           80 VAMAR--AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVAGM--AAK---QA-Y---  146 (178)
T ss_dssp             HHHHH--TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCTTH--HHH---HT-T---
T ss_pred             HHHHh--cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh--CCcccch--hhh---hc-h---
Confidence            22222  367899998553 223223333312223446899999999999999988  3211111  111   11 1   


Q ss_pred             hHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcC
Q 028388          169 PVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFT  201 (209)
Q Consensus       169 ~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~  201 (209)
                      .+.. +. .. -+++|++ .+++++++.|.+.+.
T Consensus       147 ~~~~-~~-~~-d~~idt~~~~~~~~~~~I~~~l~  177 (178)
T 1qhx_A          147 VVHE-GV-EY-DVEVDTTHKESIECAWAIAAHVV  177 (178)
T ss_dssp             GGGT-TC-CC-SEEEETTSSCHHHHHHHHHTTCC
T ss_pred             hhcc-CC-CC-cEEEECCCCCHHHHHHHHHHHhc
Confidence            1111 11 12 3566764 599999999988764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.62  E-value=2.1e-14  Score=106.31  Aligned_cols=175  Identities=19%  Similarity=0.254  Sum_probs=100.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH----cCCchH--HHHHHHH-----------------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK----SGSENG--TMIQNMI-----------------   74 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~----~~~~~~--~~~~~~~-----------------   74 (209)
                      ..++.+|+|+|++||||||+++.|++.+|+++++.|++++....    .+....  ..+....                 
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceE
Confidence            34567999999999999999999999999999999999886432    332210  1111111                 


Q ss_pred             -HcCC----CCCHHHHH-------------HHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHH
Q 028388           75 -KEGK----IVPSEVTI-------------KLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE  135 (209)
Q Consensus        75 -~~~~----~~~~~~~~-------------~~i~~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~  135 (209)
                       ..+.    .+..+.+.             ..+...... ..+.++|+||......        ....++++|||++|++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~--------~l~~~d~vi~L~a~~e  164 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV--------VLPQAELKIFLVASVD  164 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS--------SGGGCSEEEEEECCHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh--------hccCCCEEEEEECCHH
Confidence             1111    11111111             122222111 1356899998754210        1123578999999999


Q ss_pred             HHHHHHhhc--cCCCCCCcHHHHHHHHHH--HHhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          136 EMERRILNR--NQGREDDNVETIRKRFKV--FLESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       136 ~~~~R~~~r--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      ++.+|+..+  .+++ ....+.+.+.+..  +....+.+...+. ....++||++ .++++++++|.+.+..
T Consensus       165 ~~~~R~~~~~~~R~~-~~~~e~~~~~i~~R~~~~~~~~~~p~~~-~~d~~vId~~~~s~eev~~~I~~~l~~  234 (236)
T 1q3t_A          165 ERAERRYKENIAKGI-ETDLETLKKEIAARDYKDSHRETSPLKQ-AEDAVYLDTTGLNIQEVVEKIKAEAEK  234 (236)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHTTCSSSCCSC-CTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhhhhhcccccccc-cCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            999997322  1143 2344555544432  1111111111122 1234678876 5999999999988754

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.62  E-value=4.3e-15  Score=106.28  Aligned_cols=150  Identities=13%  Similarity=0.179  Sum_probs=89.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcC----CCCC-----------HH-
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVP-----------SE-   83 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----------~~-   83 (209)
                      ..++|+|+|++||||||+++.|++.+|+++++.|++.++.+..  .. ..+.+.+...    ..+.           .+ 
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~--~~-~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~   87 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE--VK-EKLVELFGGSVLEDGKVNRKKLAGIVFESREN   87 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH--TH-HHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH--HH-HHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence            3568999999999999999999999999999999998887653  11 1111111110    0011           11 


Q ss_pred             ----------HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           84 ----------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        84 ----------~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                                .+...+...+... +..+|+|+ |...+.  .+..    .++.+||+++|++++.+|+...         
T Consensus        88 ~~~l~~i~hP~i~~~~~~~~~~~-~~~vv~d~-pll~e~--~~~~----~~d~vi~v~a~~e~r~~Rli~~---------  150 (192)
T 2grj_A           88 LKKLELLVHPLMKKRVQEIINKT-SGLIVIEA-ALLKRM--GLDQ----LCDHVITVVASRETILKRNREA---------  150 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-CEEEEEEC-TTTTTT--TGGG----GCSEEEEEECCHHHHHHHCSSH---------
T ss_pred             HHHHHhhhCHHHHHHHHHHHHHc-CCEEEEEE-eceeec--ChHH----hCCEEEEEECCHHHHHHHHHHh---------
Confidence                      1111222222222 45778885 332222  1222    3678999999999999997211         


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                           ++..+.+.       .....+ ++|+++.+++++.++|.+++..
T Consensus       151 -----q~~~~~~~-------~~~~AD-~vI~n~~~~~~l~~~v~~~~~~  186 (192)
T 2grj_A          151 -----DRRLKFQE-------DIVPQG-IVVANNSTLEDLEKKVEEVMKL  186 (192)
T ss_dssp             -----HHHHTTCT-------TCCCCS-EEEECSSCHHHHHHHHHHHHHH
T ss_pred             -----cCCchhhh-------HHhcCC-EEEECCCCHHHHHHHHHHHHHH
Confidence                 11111010       112233 4667778999999999887653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.61  E-value=8e-15  Score=111.44  Aligned_cols=122  Identities=15%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh--CCceecHhHHHHHHHHcCCchHHHHHHHHHcC----CCCCHHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF--GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG----KIVPSEVTIKLLQ   90 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~   90 (209)
                      ...+|.+|+|+|+|||||||+++.|++++  ++.+||.|. ++.....   .......+....    ...........+.
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~  104 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIIS  104 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHH
Confidence            34568899999999999999999999998  788898754 4322111   111111110000    0011122233444


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHH----HHHHhhc
Q 028388           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEM----ERRILNR  144 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~----~~R~~~r  144 (209)
                      ..+.  .+..+|+|+.+....+...+...  ....+..++++.+|++++    .+|+..|
T Consensus       105 ~~l~--~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          105 RLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             HHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             HHHh--cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            4444  37889999988776644443321  112233478999999999    8888766

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.61  E-value=1.5e-14  Score=103.14  Aligned_cols=160  Identities=17%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH----H
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT----I   86 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   86 (209)
                      ....++.+|+|+|+|||||||+++.|++.++     +.+++.|. ++..+.....              +.....    .
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~--------------~~~~~r~~~~~   72 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAG--------------FTREERLRHLK   72 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCC--------------CCHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccC--------------CChhhHHHHHH
Confidence            3345678999999999999999999999885     34566544 3332211111              111111    1


Q ss_pred             H--HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH-
Q 028388           87 K--LLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK-  161 (209)
Q Consensus        87 ~--~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~-  161 (209)
                      .  .+...+. ..+..+++|++.........+..+  ....|+++|||++|++++.+|+..+           ...+.. 
T Consensus        73 ~~~~~~~~~~-~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~-----------~~~~~~~  140 (186)
T 2yvu_A           73 RIAWIARLLA-RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG-----------LYKKALK  140 (186)
T ss_dssp             HHHHHHHHHH-TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH-----------HHHHHHT
T ss_pred             HHHHHHHHHH-hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh-----------hhhHHhh
Confidence            1  1111122 246778889865444333333332  2335789999999999999997532           000000 


Q ss_pred             HHHhhchhHHHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          162 VFLESSLPVVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      ............|.. ....+.+|++ .++++++++|.+.+..
T Consensus       141 ~~~~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~  183 (186)
T 2yvu_A          141 GELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA  183 (186)
T ss_dssp             TCCSSCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            000000001111221 1234678886 7999999999988754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.59  E-value=1.9e-14  Score=105.25  Aligned_cols=171  Identities=15%  Similarity=0.237  Sum_probs=97.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH----HHcCCchHHHHHHH-------H-----------HcC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE----IKSGSENGTMIQNM-------I-----------KEG   77 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~----~~~~~~~~~~~~~~-------~-----------~~~   77 (209)
                      +|++|+|+|++||||||+++.|++.+|+++++.|++++..    ...+.  ...+.+.       +           ..+
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g   79 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDN   79 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCC
Confidence            3678999999999999999999999999999999998864    22222  1111111       0           111


Q ss_pred             CCC----CHHHH-------------HHHHHHHHH-hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388           78 KIV----PSEVT-------------IKLLQKAME-ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER  139 (209)
Q Consensus        78 ~~~----~~~~~-------------~~~i~~~~~-~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~  139 (209)
                      ...    .....             ...+..... ...+.++|+||....  .     . ....++++|||++|++++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~--~-----~-~~~~~~~vi~l~a~~e~~~~  151 (219)
T 2h92_A           80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG--T-----V-VLPDADLKVYMIASVEERAE  151 (219)
T ss_dssp             EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC--C-----C-CCTTCSEEEEEECCHHHHHH
T ss_pred             ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc--c-----e-ecCCCCEEEEEECCHHHHHH
Confidence            111    11111             111111111 113567899974210  0     0 22346789999999999999


Q ss_pred             HHhhc--cCCCCCCcHHHHHHHHHHH--HhhchhHHHHHhhcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          140 RILNR--NQGREDDNVETIRKRFKVF--LESSLPVVQYYEAKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       140 R~~~r--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      |+..+  .++. ....+.+.+++...  .+..+.....+. ....++||++ .++++++++|.+.+..
T Consensus       152 R~~~~~~~r~~-~~~~e~~~~~~~~r~~~d~~r~~~~~~~-~~d~~~Id~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          152 RRYKDNQLRGI-ESNFEDLKRDIEARDQYDMNREISPLRK-ADDAVTLDTTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             HHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHCSSSCSCC-CTTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCc-ccCHHHHHHHHHHHHHhhhhhhcccccc-CCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence            97532  1133 22455555555321  111111111122 2344677776 5999999999988753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.57  E-value=7.7e-15  Score=108.20  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=41.2

Q ss_pred             CCCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhchhHHHHH--hhcCcEEEEcCCCChHHHHHHH
Q 028388          121 KIEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSLPVVQYY--EAKGKVRKIDAAKPVAEVFDAV  196 (209)
Q Consensus       121 ~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~ee~~~~i  196 (209)
                      ...||++|||++|++++.+|+.+|  ++..+.  ...+.+++...+..+   ...+  .....+++||++.+++++.++|
T Consensus       144 ~~~pD~vi~Ld~~~e~~~~Ri~~R--~r~~e~~~~~~~~~rv~~~~~~~---~~~~~~~~~~~~~vId~~~~~eev~~~I  218 (230)
T 2vp4_A          144 HVQADLIIYLRTSPEVAYERIRQR--ARSEESCVPLKYLQELHELHEDW---LIHQRRPQSCKVLVLDADLNLENIGTEY  218 (230)
T ss_dssp             CCCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHH---HTSCCSSCCCEEEEEECCC---------
T ss_pred             cCCCCEEEEEeCCHHHHHHHHHHc--CCcccccCcHHHHHHHHHHHHHH---HHHhcccCCCCEEEEECCCCHHHHHHHH
Confidence            567999999999999999999988  554332  124555555443322   1111  2345689999999999999999


Q ss_pred             HHhcCcchhh
Q 028388          197 KAVFTPKDEK  206 (209)
Q Consensus       197 ~~~i~~~~~~  206 (209)
                      .+.+......
T Consensus       219 ~~~l~~~~~~  228 (230)
T 2vp4_A          219 QRSESSIFDA  228 (230)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhc
Confidence            9988776544

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.57  E-value=1.3e-14  Score=105.56  Aligned_cols=164  Identities=13%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i   89 (209)
                      ...++++|+|+|+|||||||+++.|++.++      +.+++.+.+ +..+.....+. ......+        ..+...+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~-r~~l~~~~~~~~~~r~~~~--------~~~~~~~   91 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI-RFGLNKDLGFSEADRNENI--------RRIAEVA   91 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH-TTTTTTTCCSSHHHHHHHH--------HHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH-hhhhccccCCCHHHHHHHH--------HHHHHHH
Confidence            345678999999999999999999999887      777776443 32221111111 0000000        0011122


Q ss_pred             HHHHHhcCCCeEEEeCCCCC-HHHHHHHHHh-c-------CCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388           90 QKAMEESGNDKFLIDGFPRN-EENRAAFEAV-T-------KIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus        90 ~~~~~~~~~~~~i~dg~~~~-~~~~~~~~~~-~-------~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                      ...+.  .+..||+| +... ......+..+ .       ...|+++|||++|++++.+|+. |    +     .+.+.-
T Consensus        92 ~~~l~--~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~-r----~-----~~~~~r  158 (211)
T 1m7g_A           92 KLFAD--SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP-K----G-----LYKKAR  158 (211)
T ss_dssp             HHHHH--TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT-T----C-----HHHHHH
T ss_pred             HHHHH--CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhh-H----H-----HHHHHH
Confidence            23333  46789999 4422 2233334432 1       1257899999999999999952 1    0     000000


Q ss_pred             HHHHhhchhHHHHHhhc-CcEEEEcCCC-ChHHHHHHHHHhcCc
Q 028388          161 KVFLESSLPVVQYYEAK-GKVRKIDAAK-PVAEVFDAVKAVFTP  202 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~id~~~-~~ee~~~~i~~~i~~  202 (209)
                      ..|......+...|+.. ...++||++. ++++++++|.+.+..
T Consensus       159 ~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          159 EGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             HTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence            01111111111123221 2247888877 999999999988754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=99.49  E-value=4.6e-14  Score=104.72  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCCCc--HHHHHHHHHHHHhhch-----hH-HHHHhhcCcEEEEcCCCChHHHH
Q 028388          122 IEPEFVLFFDCSEEEMERRILNRNQGREDDN--VETIRKRFKVFLESSL-----PV-VQYYEAKGKVRKIDAAKPVAEVF  193 (209)
Q Consensus       122 ~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~--~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~id~~~~~ee~~  193 (209)
                      ..||++|||++|++++.+|+.+|  ++..+.  ...+.+++...+..+.     |+ ...+ ....++++|++.+++++.
T Consensus       148 ~~pd~~i~l~~~~~~~~~R~~~R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~  224 (241)
T 2ocp_A          148 ITLHGFIYLQASPQVCLKRLYQR--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEV  224 (241)
T ss_dssp             HCCCEEEEEECCHHHHHHHHHHS--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCH
T ss_pred             cCCCEEEEEECCHHHHHHHHHhc--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCH
Confidence            37999999999999999999988  554443  1333444333322110     00 0011 345789999988877766


Q ss_pred             HHHHHhcC
Q 028388          194 DAVKAVFT  201 (209)
Q Consensus       194 ~~i~~~i~  201 (209)
                      +.+...+.
T Consensus       225 ~~i~~i~~  232 (241)
T 2ocp_A          225 TKQEDLMR  232 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.48  E-value=1.3e-12  Score=92.45  Aligned_cols=164  Identities=14%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHh-HHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH--HHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL--QKAM   93 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~   93 (209)
                      ++.+|+|+|++||||||+++.|++.+   |++++..+ +.++..+.....+....          ....+....  ...+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~   73 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED----------REENVRRIAEVAKLF   73 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH----------HHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc----------HHHHHHHHHHHHHHH
Confidence            56899999999999999999999998   87776432 33332211100000000          001111111  1112


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      .. .+..++.+...........+..+  ....|+++|||++|++++.+|+.+|  .    ..+.-..++..+ ....+.+
T Consensus        74 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~--~----~~~~~~~~~~~~-~~~~~~~  145 (179)
T 2pez_A           74 AD-AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--L----YKKARAGEIKGF-TGIDSEY  145 (179)
T ss_dssp             HH-TTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS--H----HHHHHTTSSCSC-BTTTBCC
T ss_pred             HH-CCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh--h----HHHHhccccccc-ccCCccc
Confidence            22 34444444331221111222211  2336789999999999999997643  0    000000000000 0000000


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +. .....+++.+++.+++++.++|.+.+..
T Consensus       146 ~~-~~~ad~vid~~~~~~~~~~~~i~~~l~~  175 (179)
T 2pez_A          146 EK-PEAPELVLKTDSCDVNDCVQQVVELLQE  175 (179)
T ss_dssp             CC-CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             cC-CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            00 1123454445566999999999988753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.46  E-value=7.1e-13  Score=95.55  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=88.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh---CCc--eecHhHHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQK   91 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~--~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~   91 (209)
                      ..++.+|+|.|++||||||+++.|+..+   |..  +++.+++.. .+.....+. ......+        .. ...+..
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~--------~~-~~~~~~   91 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI--------RR-VGEVAK   91 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH--------HH-HHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH--------HH-HHHHHH
Confidence            4568899999999999999999999999   555  777765432 111111111 0000000        00 011112


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh------hccCCCCCCcHHHHHHHHHHHHh
Q 028388           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL------NRNQGREDDNVETIRKRFKVFLE  165 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~------~r~~~~~~~~~~~~~~~~~~~~~  165 (209)
                      .+. ..+..++.+...........+..+........|||++|++++.+|..      .|  .........+         
T Consensus        92 ~~~-~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r--~~~~~~~~~~---------  159 (200)
T 3uie_A           92 LFA-DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLAR--AGKIKGFTGI---------  159 (200)
T ss_dssp             HHH-HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHH--TTSSCSCBTT---------
T ss_pred             HHH-hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHh--cCCCCCCCCC---------
Confidence            222 23677777765455556666665222223457999999999999972      22  1110000000         


Q ss_pred             hchhHHHHHhhc-CcEEEEcCC--CChHHHHHHHHHhcCc
Q 028388          166 SSLPVVQYYEAK-GKVRKIDAA--KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       166 ~~~~~~~~~~~~-~~~~~id~~--~~~ee~~~~i~~~i~~  202 (209)
                           ...|+.. ..-+++|++  .++++++++|.+.+..
T Consensus       160 -----~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~  194 (200)
T 3uie_A          160 -----DDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN  194 (200)
T ss_dssp             -----TBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             -----CCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence                 0112221 223577765  5999999999988854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.46  E-value=4.7e-13  Score=94.96  Aligned_cols=165  Identities=16%  Similarity=0.284  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCch----HHHHHHHHHcCCCCCHHH--------HH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSEN----GTMIQNMIKEGKIVPSEV--------TI   86 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~--------~~   86 (209)
                      .|+|+||+|||||||++.|.+.+.- ..++.....|....+   +..+    ...+...+..+.++....        ..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            4899999999999999999887632 223322222222111   1110    133444444443332211        14


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhh
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLES  166 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~  166 (209)
                      ..++..+.  .+..+|+|..+   .-...+.......+..++++..+.+++.+|+..|  +.  +..+.+.+|+......
T Consensus        83 ~~v~~~l~--~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~R--g~--e~~e~i~~Rl~~a~~e  153 (186)
T 1ex7_A           83 ASVKQVSK--SGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQAE  153 (186)
T ss_dssp             HHHHHHHH--HTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--CC--SCHHHHHHHHHHHHHH
T ss_pred             ceeeehhh--CCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHH
Confidence            55666666  37899999653   2222333211124545555566789999999988  43  4567888887765442


Q ss_pred             chhHHHHHh-hcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          167 SLPVVQYYE-AKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       167 ~~~~~~~~~-~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .    .... ..-+.+++|.  ++++.++++.+.|.+
T Consensus       154 ~----~~~~~~~fD~vIvNd--dle~a~~~l~~iI~a  184 (186)
T 1ex7_A          154 L----AYAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             H----HHHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred             H----hhccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence            1    1111 1224556665  699999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.45  E-value=2.4e-13  Score=101.55  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=71.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHH------Hc--CCchHHHHHHHHHcCCCCCHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEI------KS--GSENGTMIQNMIKEGKIVPSEVTI   86 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~   86 (209)
                      ....|.+|+|+|+|||||||+++.|++.++  +.+++.|. ++..+      ..  +..........       ......
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~~-------~~~~~~   99 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKDF-------AGKMVE   99 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHHH-------HHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhHH-------HHHHHH
Confidence            345688999999999999999999999997  55666654 33221      11  11111111100       011122


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           87 KLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        87 ~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .++...+.  .+..+|+|+++....+...+...  ....+..++++.+|++++.+|...|
T Consensus       100 ~~~~~~~~--~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R  157 (253)
T 2p5t_B          100 SLVTKLSS--LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR  157 (253)
T ss_dssp             HHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence            33333333  35689999988766544433332  1222334678899999999999988

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.45  E-value=1.1e-12  Score=108.42  Aligned_cols=161  Identities=14%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHh-HHHHHHHHcCCchH-HHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAG-DLLRAEIKSGSENG-TMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      ++++|+|+|+|||||||+++.|++++   |+.++..| +.++..+.....+. ....+.+.        .+...+...+.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r--------~i~eva~~~l~  122 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR--------RIAEVAKLFAD  122 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH--------HHHHHHHHHHh
Confidence            68899999999999999999999999   87766553 44444322211111 01111110        01112222222


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        95 ~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                        .+..++.|...........+..+  ....++++|||++|++++.+|+.++  ...+... ..       .+ ...   
T Consensus       123 --~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~-~~-------~~-~~~---  188 (630)
T 1x6v_B          123 --AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGE-IK-------GF-TGI---  188 (630)
T ss_dssp             --TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC------------C-BTT---
T ss_pred             --CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhh-HH-------HH-HHh---
Confidence              46777777322122222333322  3345788999999999999998743  1111111 00       01 111   


Q ss_pred             HHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          171 VQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                      ...|+. ...-++||++ .++++++++|.+.|..
T Consensus       189 ~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~  222 (630)
T 1x6v_B          189 DSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE  222 (630)
T ss_dssp             TBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHH
T ss_pred             hhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHh
Confidence            111221 1122677775 6999999999988753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.40  E-value=3.1e-12  Score=105.09  Aligned_cols=163  Identities=16%  Similarity=0.113  Sum_probs=90.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      ..+++|+++|+|||||||+++.|++.++.     .+++.| .+++.+.....+...-+...       ...+...+...+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-------l~~i~~~~~~~l  441 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-------ILRVGFVASEIV  441 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-------HHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-------HHHHHHHHHHHH
Confidence            35789999999999999999999999864     677764 45554322221111111000       000112222222


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                      .  .+.++|+|...........+.. ....++ ++|||++|.+++.+|+.++  .......    ..+..+.....+   
T Consensus       442 ~--~G~~VI~d~~~~~~~~r~~~~~-~l~~~d~~vV~L~~~~e~~~~Rl~r~--~~~~~~~----~~i~~~~~vr~~---  509 (546)
T 2gks_A          442 K--HNGVVICALVSPYRSARNQVRN-MMEEGKFIEVFVDAPVEVCEERDVKG--LYKKAKE----GLIKGFTGVDDP---  509 (546)
T ss_dssp             H--TTCEEEEECCCCCHHHHHHHHT-TSCTTCEEEEEEECCGGGHHHHCCSS--HHHHC----------CCBTTTBC---
T ss_pred             h--CCCEEEEEcCCCCHHHHHHHHH-HhhcCCEEEEEEeCCHHHHHHHhhcc--ccccccH----HHHHHHHhhhhc---
Confidence            2  4789999975444444444444 222356 7999999999999997632  0000000    111111111011   


Q ss_pred             HHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          173 YYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       173 ~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                       |.. ....++||++ .++++++++|.+.+..
T Consensus       510 -~e~~~~adivIDts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          510 -YEPPVAPEVRVDTTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             -CCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred             -cccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence             111 1123677774 7999999999988753

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.38  E-value=2.5e-12  Score=92.81  Aligned_cols=169  Identities=14%  Similarity=0.231  Sum_probs=86.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCC--------
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVP--------   81 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~--------   81 (209)
                      .|.++.+|+|+||+||||||+++.|+..+....++..++.+....   .+..    ....+......+....        
T Consensus         3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T 3tr0_A            3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH   82 (205)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred             cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence            455678999999999999999999998764222221111100000   0000    0011111110000000        


Q ss_pred             HHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388           82 SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFK  161 (209)
Q Consensus        82 ~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (209)
                      .......+...+.  .+..+++|+.+   .....+.. ....+..++++.++++++.+|+..|  ++.  ..+.+.+++.
T Consensus        83 ~~~~~~~i~~~l~--~g~~vi~d~~~---~~~~~~~~-~~~~~~~v~~~~~~~e~l~~Rl~~R--~~~--~~~~i~~rl~  152 (205)
T 3tr0_A           83 YGTEKDWVLRQLK--AGRDVLLEIDW---QGARQIRE-LFPPALSIFILPPSIEALRERLIKR--RQD--DTAIIEQRLA  152 (205)
T ss_dssp             EEEEHHHHHHHHH--TTCEEEEECCH---HHHHHHHH-HCTTCEEEEEECSCHHHHHHHHHTC--TTS--CSSTHHHHHH
T ss_pred             ccchHHHHHHHHH--cCCeEEEEECH---HHHHHHHH-hCCCcEEEEEECcCHHHHHHHHHHh--CCC--CHHHHHHHHH
Confidence            0000123444444  36788999643   22223333 3444544444455799999999988  432  2334555555


Q ss_pred             HHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .....    ..++ ...+++++|+  +++++.+++.+.|..
T Consensus       153 ~~~~~----~~~~-~~~d~vi~n~--~~~~~~~~l~~~i~~  186 (205)
T 3tr0_A          153 LAREE----MAHY-KEFDYLVVND--NFDQAVQNLIHIISA  186 (205)
T ss_dssp             HHHHH----HTTG-GGCSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHH----Hhcc-cCCCEEEECC--CHHHHHHHHHHHHHH
Confidence            44332    1222 2334555544  899999999988854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=99.38  E-value=1.4e-14  Score=105.43  Aligned_cols=161  Identities=17%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecH-------------hHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-------------GDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
                      ++|+|+|++||||||+++.|++.++...++.             ++.++..+.+..            +..........+
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~------------~~~~~~~~~~~~   68 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEH------------GDLASSVYAMAT   68 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEE------------EEEEEEHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccc------------cccCCCHhHHHH
Confidence            4799999999999999999999985322111             222333221100            000000100000


Q ss_pred             ---H-----HHHHHh--cCCCeEEEeCCCCCHH--H------------HHHHHHh-----cCCCCcEEEEEecCHHHHHH
Q 028388           89 ---L-----QKAMEE--SGNDKFLIDGFPRNEE--N------------RAAFEAV-----TKIEPEFVLFFDCSEEEMER  139 (209)
Q Consensus        89 ---i-----~~~~~~--~~~~~~i~dg~~~~~~--~------------~~~~~~~-----~~~~~~~~i~L~~~~~~~~~  139 (209)
                         .     ...+..  ..+..+|+|+++.+..  +            ...+..+     ....|+.+|||++|++++.+
T Consensus        69 ~~~~~r~~~~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~  148 (214)
T 1gtv_A           69 LFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGE  148 (214)
T ss_dssp             HHHHHHHEEHHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHH
Confidence               0     011111  1367899999864421  1            1112221     12368999999999999999


Q ss_pred             HHhhccC---CCCCCc---HHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHH
Q 028388          140 RILNRNQ---GREDDN---VETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA  198 (209)
Q Consensus       140 R~~~r~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~  198 (209)
                      |+..|..   ++..+.   ...+.+++...+..   ....+. ...+++||++.+++++.++|.+
T Consensus       149 R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~---~~~~~~-~~~~~vId~~~~~~~v~~~i~~  209 (214)
T 1gtv_A          149 RSRGRAQRDPGRARDNYERDAELQQRTGAVYAE---LAAQGW-GGRWLVVGADVDPGRLAATLAP  209 (214)
T ss_dssp             HHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHH---HHHEEE-EEEEEEEEEEEBHHHHHHHHC-
T ss_pred             HHHcccccccccccccccccHHHHHHHHHHHHH---HHHhCC-CCCEEEEeCCCCHHHHHHHhcC
Confidence            9998811   111111   13444444322211   111010 1357889998899999888753

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.38  E-value=9.5e-13  Score=107.61  Aligned_cols=148  Identities=16%  Similarity=0.267  Sum_probs=83.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCc-----eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYT-----HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVTIKL   88 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   88 (209)
                      +..|.+|+++|+|||||||+++.|++.+++.     +++.|++.+.. .......    .++.......    .......
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~-~~~~~~~----~~f~~~~~~~~~~re~~~~~~  106 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA-VKQYSSY----NFFRPDNEEAMKVRKQCALAA  106 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HSCCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh-ccCCccc----cccCcccHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999643     46777755444 3321110    0010000000    0111111


Q ss_pred             HH---HHHHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecC-HHHHHHHHhhccCCCCC----Cc---HHH
Q 028388           89 LQ---KAMEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCS-EEEMERRILNRNQGRED----DN---VET  155 (209)
Q Consensus        89 i~---~~~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~-~~~~~~R~~~r~~~~~~----~~---~~~  155 (209)
                      +.   ..+....+..+|+|+.+........+..+  ......++|++.|+ ++.+.+|+..|...++.    +.   .+.
T Consensus       107 l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~~d~e~~~~~  186 (520)
T 2axn_A          107 LRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDD  186 (520)
T ss_dssp             HHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTTSCHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCccccCCHHHHHHH
Confidence            22   22222357899999998887777665443  11112346666676 67777888666212221    22   234


Q ss_pred             HHHHHHHHHhhchhH
Q 028388          156 IRKRFKVFLESSLPV  170 (209)
Q Consensus       156 ~~~~~~~~~~~~~~~  170 (209)
                      +.+|+..|.....++
T Consensus       187 ~~~Ri~~y~~~Yepi  201 (520)
T 2axn_A          187 FMKRISCYEASYQPL  201 (520)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHhhhhhhccc
Confidence            556677776666555

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=9.9e-12  Score=90.09  Aligned_cols=166  Identities=16%  Similarity=0.288  Sum_probs=84.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH--------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS--------   82 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~--------   82 (209)
                      .++.+|+|+||+||||||+++.|++.++. .........+.....   +..    ....+...+..+.....        
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y   85 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY   85 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence            46789999999999999999999998742 111110000000000   000    00111111111111100        


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHH
Q 028388           83 EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFK  161 (209)
Q Consensus        83 ~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~  161 (209)
                      ......+...+.  .+..+|+|..+   .....+.. ....+ .+||+.+ +.+++.+|+..|  +.  +..+.+.+++.
T Consensus        86 g~~~~~i~~~l~--~g~~vild~~~---~g~~~~~~-~~~~~-~~i~i~~ps~~~l~~Rl~~R--~~--~~~e~i~~Rl~  154 (208)
T 3tau_A           86 GTPLEYVEEKLA--AGVDIFLEIEV---QGAMQVRK-AMPEG-IFIFLTPPDLSELKNRIIGR--GT--ESMEVVEERME  154 (208)
T ss_dssp             EEEHHHHHHHHH--TTCCEEEECCH---HHHHHHHH-HCTTS-EEEEEECTTTTTSSCC-----------CCHHHHHHHH
T ss_pred             CCcHHHHHHHHH--cCCeEEEEeeH---HHHHHHHH-hCCCe-EEEEEeCCCHHHHHHHHHhc--CC--CCHHHHHHHHH
Confidence            000233455554  47889999643   22233333 33344 4556555 489999999987  43  34467777776


Q ss_pred             HHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .....    ..+ ....+++++|.  +++++++++.+.|..
T Consensus       155 ~~~~e----~~~-~~~~d~vivN~--~~~~~~~~l~~~i~~  188 (208)
T 3tau_A          155 TAKKE----IEM-MASYDYAVVND--VVANAVQKIKGIVET  188 (208)
T ss_dssp             HHHHH----HHH-GGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHH----HHh-hccCCEEEECc--CHHHHHHHHHHHHHH
Confidence            55432    122 22334556655  699999999988854

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.33  E-value=1.4e-11  Score=101.65  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=86.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC------ceecHhHHHHHHHHcCCchHHHHHH-HHHcCCCCCHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY------THLSAGDLLRAEIKSGSENGTMIQN-MIKEGKIVPSEVTIKLLQ   90 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~   90 (209)
                      ..++++|+|+|+|||||||+++.|+++|+.      .+++.| .++..+.....+...-+. .+        ..+...+.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D-~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~  463 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD-TVRHELSSELGFTREDRHTNI--------QRIAFVAT  463 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH-HHHHHTCTTCCCSHHHHHHHH--------HHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH-HHHHHhccccCCChhHHHHHH--------HHHHHHHH
Confidence            346789999999999999999999999872      456654 444432221111110000 00        00111222


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchh
Q 028388           91 KAMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP  169 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  169 (209)
                      ....  .+..+|+|........+..+..+ ....+.++|||++|++++.+|..++      .-.......+..+.....+
T Consensus       464 ~~~~--~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~------l~~~~~~~~i~~~~~~r~~  535 (573)
T 1m8p_A          464 ELTR--AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG------IYAAARRGEIKGFTGVDDP  535 (573)
T ss_dssp             HHHH--TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSC------HHHHHHTTSSSSCBTTTBC
T ss_pred             HHHh--CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhccc------chhhhhHHHHHHHHhcccc
Confidence            2222  36778888433223333333332 1112458999999999999995422      0000000000011111111


Q ss_pred             HHHHHhh-cCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          170 VVQYYEA-KGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       170 ~~~~~~~-~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                          |.. ...-++||++ .++++++++|...|..
T Consensus       536 ----~~~p~~~dl~IDts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          536 ----YETPEKADLVVDFSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             ----CCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred             ----ccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence                111 1223677875 5999999999988754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.31  E-value=2.3e-11  Score=88.21  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLL   56 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~   56 (209)
                      ..++.+|.|.|++||||||+++.|+..++  +.+++.|.++
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            45678999999999999999999999998  8888876644

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.31  E-value=2.4e-12  Score=93.05  Aligned_cols=165  Identities=16%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh-CCceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCHH-------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVPSE-------   83 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~-------   83 (209)
                      .++.+|+|+|++||||||+++.|+..+ ....+..++..+....   .+..    ....+......+......       
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY   83 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence            457899999999999999999999877 2111111111110000   0000    001111111111111000       


Q ss_pred             -HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCc-EEEEEe-cCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388           84 -VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-FVLFFD-CSEEEMERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus        84 -~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~-~~i~L~-~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                       .....+...+.  .+..+|+|+.+...   ..+.. ..  ++ .++|+. ++.+++.+|+..|  +.  +..+.+.+++
T Consensus        84 g~~~~~i~~~l~--~g~~vv~d~~~~~~---~~~~~-~~--~~~~~i~~~~~~~~~~~~Rl~~R--~~--~~~~~~~~rl  151 (207)
T 2j41_A           84 GTPVQYVKDTMD--EGHDVFLEIEVEGA---KQVRK-KF--PDALFIFLAPPSLEHLRERLVGR--GT--ESDEKIQSRI  151 (207)
T ss_dssp             EEEHHHHHHHHH--TTCEEEEECCGGGH---HHHHH-HC--TTSEEEEEECCC---------------------------
T ss_pred             CCCHHHHHHHHH--cCCeEEEEECHHHH---HHHHH-hc--CCeEEEEEECCCHHHHHHHHHhc--CC--CCHHHHHHHH
Confidence             01223444444  36889999864332   22333 22  23 344444 5678999999877  32  3345566666


Q ss_pred             HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..+....    .++. ...+++ +++ +++++.++|.+.+..
T Consensus       152 ~~~~~~~----~~~~-~~d~vI-~n~-~~e~~~~~i~~~l~~  186 (207)
T 2j41_A          152 NEARKEV----EMMN-LYDYVV-VND-EVELAKNRIQCIVEA  186 (207)
T ss_dssp             ----CGG----GGGG-GCSEEE-ECS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----hccc-cCCEEE-ECC-CHHHHHHHHHHHHHH
Confidence            5544322    1222 234544 444 899999999988754

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=99.30  E-value=8.4e-12  Score=96.01  Aligned_cols=29  Identities=17%  Similarity=0.103  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .++++|+|+|+.||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            34689999999999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=99.25  E-value=2e-11  Score=92.82  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR   57 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~   57 (209)
                      ++.+|.|+|++||||||+++.|++.++     +.+++.|++++
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            577999999999999999999999887     78899988774

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.24  E-value=9.4e-11  Score=87.04  Aligned_cols=177  Identities=18%  Similarity=0.236  Sum_probs=91.3

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc----------eecHhHHHHHHHHcCCchHHHHHHHHHcC-----CC
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT----------HLSAGDLLRAEIKSGSENGTMIQNMIKEG-----KI   79 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   79 (209)
                      ++...++.+|.|.|++||||||+++.|+..+|..          +++.+.+++.     -.............     ..
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~-----l~~~~~~~~~~~~~~~~~~~~   93 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKV-----LTAEQKAKALKGQYNFDHPDA   93 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCC-----CCHHHHHHHHTTCCCTTSGGG
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccc-----cCHhHhhhhhccCCCCCCccc
Confidence            3455677899999999999999999999988865          5666543211     01111111111100     01


Q ss_pred             CCHHHHHHHHHHHHH----------------------hcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHH
Q 028388           80 VPSEVTIKLLQKAME----------------------ESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM  137 (209)
Q Consensus        80 ~~~~~~~~~i~~~~~----------------------~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~  137 (209)
                      ...+.+.+.+.....                      ......+|+|+.......  .+..    ..+..|++.++.+..
T Consensus        94 ~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~--~l~~----~~~~~i~v~th~~~~  167 (245)
T 2jeo_A           94 FDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQ--EIRD----MFHLRLFVDTDSDVR  167 (245)
T ss_dssp             BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSH--HHHT----TCSEEEEEECCHHHH
T ss_pred             ccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccH--HHHH----hcCeEEEEECCHHHH
Confidence            112222333332210                      012357889984322111  1222    147899999999877


Q ss_pred             HHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHH----HhhcCcEEE---EcCCCChHHHHHHHHHhcCcchhh
Q 028388          138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY----YEAKGKVRK---IDAAKPVAEVFDAVKAVFTPKDEK  206 (209)
Q Consensus       138 ~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---id~~~~~ee~~~~i~~~i~~~~~~  206 (209)
                      ..|...|.. ......+.+.+++.   ....+..+.    .....++++   +|++.+.+++.++|.++++.....
T Consensus       168 ~~r~~~r~~-~~G~~~e~~~~~~~---~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~~~~~  239 (245)
T 2jeo_A          168 LSRRVLRDV-RRGRDLEQILTQYT---TFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDICK  239 (245)
T ss_dssp             HHHHHHHHT-C---CHHHHHHHHH---HTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHHH---HhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhcchhh
Confidence            766655511 11224455554433   222222221    233345544   366778999999999888765443

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=99.21  E-value=1.6e-10  Score=82.44  Aligned_cols=162  Identities=12%  Similarity=0.111  Sum_probs=90.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHc--CCchHHHHHHHHHcCCCCCHHHHH-------H-
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTI-------K-   87 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~-   87 (209)
                      +.+|+|+|.|||||+|++..|.+.+|   +.+++.+|.+++....  +-.+...+... ...+. ....+.       . 
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~-~ykE~-~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTS-TYKEA-FRKDMIRWGEEKRQA   88 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC--------CCSS-HHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchh-hhHHH-HHHHHHHHHHHHHhc
Confidence            35899999999999999999999885   7789999999864332  11111100000 00000 000000       0 


Q ss_pred             ---HHHHH-HHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           88 ---LLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        88 ---~i~~~-~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                         .+.+. +.......+|+||. +...+.+.|.+ .....-.+|.+.+++++..+|.-.+..++. +...         
T Consensus        89 d~~~~~~~~~~~~~~~~vII~dv-R~~~Ev~~fr~-~~g~~~~iirI~as~~~R~~Rg~~~~~~~D-d~es---------  156 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSDT-RRVSDIQWFRE-AYGAVTQTVRVVALEQSRQQRGWVFTPGVD-DAES---------  156 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECCC-CSHHHHHHHHH-HHGGGEEEEEEEECHHHHHHTTCCCCTTTT-TSHH---------
T ss_pred             CchHHHHHHHHhcCCCcEEEeCC-CCHHHHHHHHH-hCCCcEEEEEEECCHHHHHHHhhhcccccc-cccc---------
Confidence               00111 11223457889986 88888888887 332334589999999999999543311222 2111         


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                       +.  .+ ..+ ...++ +|+++.+.+++.+++..++..
T Consensus       157 -E~--gL-~~~-~~~D~-vI~Ndgt~eel~~~v~~ll~~  189 (202)
T 3ch4_B          157 -EC--GL-DNF-GDFDW-VIENHGVEQRLEEQLENLIEF  189 (202)
T ss_dssp             -HH--TT-TTC-CCCSE-EEEECSCHHHHHHHHHHHHHH
T ss_pred             -cc--CC-CCC-CcCCE-EEEeCCCHHHHHHHHHHHHHH
Confidence             00  01 111 12344 444445899888887776543

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=99.20  E-value=1.7e-11  Score=94.19  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .++++|.|+|+.||||||+++.|++.++
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4568999999999999999999999885

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=99.20  E-value=6.7e-11  Score=85.23  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=55.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh---CCc--eecHhHHHHHHH---HcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF---GYT--HLSAGDLLRAEI---KSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l---~~~--~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
                      ...++.+|+|+|++||||||+++.|+..+   +..  +++.|.+.....   ..+...+.   .+..  .....+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~--~~~d~~~l~~~   92 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY--LQWDVEWLTHQ   92 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH--TSSCHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc--cccCHHHHHHH
Confidence            34567899999999999999999999876   433  344444332210   11111111   1110  11222222222


Q ss_pred             HHHHH-----------------------HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           89 LQKAM-----------------------EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        89 i~~~~-----------------------~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      +...+                       ....+..+|+||.......   +.    ..+|.+||+++|.+++.+|+.+|
T Consensus        93 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~----~~~d~~i~v~~~~~~~~~R~~~R  164 (201)
T 1rz3_A           93 LFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR----PFFDFVVYLDCPREIRFARENDQ  164 (201)
T ss_dssp             TGGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG----GGCSEEEEECCC-----------
T ss_pred             HHHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH----hhcCEEEEEeCCHHHHHHHHhcC
Confidence            21100                       0112568899986432111   11    13679999999999999999988

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=99.19  E-value=2.7e-11  Score=94.30  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.++++|.|+|+.||||||+++.|++.++
T Consensus        46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45677999999999999999999999885

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=99.19  E-value=1.5e-10  Score=89.20  Aligned_cols=30  Identities=17%  Similarity=0.072  Sum_probs=26.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQC-ANIVEHFGY   47 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla-~~L~~~l~~   47 (209)
                      +.++++|+|+|+.||||||++ +.|++.++.
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            445789999999999999999 999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.17  E-value=7.4e-11  Score=88.03  Aligned_cols=120  Identities=13%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHH-HHHcC--CchHHHHHH----HHHcC----CCCCHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRA-EIKSG--SENGTMIQN----MIKEG----KIVPSEVTIKLLQ   90 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~-~~~~~--~~~~~~~~~----~~~~~----~~~~~~~~~~~i~   90 (209)
                      ++|+|+|+|||||||+|+.|++++++.+++.|++... .+.-.  .........    ++...    ..+..........
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            4799999999999999999999999999998775311 00000  000000000    00000    0122333333444


Q ss_pred             HHHHh-cCCCeEEEeCCCCCHHHHHHHHHhcC---CCC-cEEEEEecCH-HHHHHHHhhc
Q 028388           91 KAMEE-SGNDKFLIDGFPRNEENRAAFEAVTK---IEP-EFVLFFDCSE-EEMERRILNR  144 (209)
Q Consensus        91 ~~~~~-~~~~~~i~dg~~~~~~~~~~~~~~~~---~~~-~~~i~L~~~~-~~~~~R~~~r  144 (209)
                      ..+.. ..+..+|+++-..  .....+.. ..   ... ..++||++|. +++.+|+.+|
T Consensus        82 ~~i~~~~~g~~vIl~gg~~--~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R  138 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGSI--SLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQR  138 (253)
T ss_dssp             HHHHTTTTSSEEEEEECCH--HHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccHH--HHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHH
Confidence            44411 1356677765321  22222222 20   112 2699999997 9999999999

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.17  E-value=8.8e-11  Score=95.14  Aligned_cols=148  Identities=16%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCC----CCHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKI----VPSEVTIKL   88 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   88 (209)
                      ..++.+|+++|.|||||||+++.|++.+++     ..++.+++.... .+.....    +.+.....    ....+....
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~  110 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAA  110 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHH
Confidence            456789999999999999999999999864     445555543332 2221000    00000000    000111112


Q ss_pred             ---HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEe---cCHHHHHHHHhhccCCCCC---CcH----HH
Q 028388           89 ---LQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFD---CSEEEMERRILNRNQGRED---DNV----ET  155 (209)
Q Consensus        89 ---i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~---~~~~~~~~R~~~r~~~~~~---~~~----~~  155 (209)
                         +...+....+.++|+|........+..+..........++||+   .+++.+.+|+..+...+++   ...    +.
T Consensus       111 l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~~~~e~~~~~  190 (469)
T 1bif_A          111 LNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATED  190 (469)
T ss_dssp             HHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTTSCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccCCCHHHHHHH
Confidence               2444444457899999988888776666442111112356677   5577788887755222222   122    34


Q ss_pred             HHHHHHHHHhhchhH
Q 028388          156 IRKRFKVFLESSLPV  170 (209)
Q Consensus       156 ~~~~~~~~~~~~~~~  170 (209)
                      +.+++..|.....++
T Consensus       191 ~~~R~~~y~~~ye~l  205 (469)
T 1bif_A          191 FMRRIECYENSYESL  205 (469)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             HHHHHHHhccEeEEC
Confidence            555566666655554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.16  E-value=1.1e-09  Score=77.91  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh--cCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE--SGN   98 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~   98 (209)
                      .+++|.|++||||||+++.|+..++. .+++.+++.... ..+... ..       ............+......  ..+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~~~-~~-------~~~~~~~~~~~~l~~~~~~~~~~~   73 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGYRP-PW-------ESDELLALTWKNITDLTVNFLLAQ   73 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTCCC-GG-------GCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccccc-Cc-------cchhHHHHHHHHHHHHHHHHHhcC
Confidence            57999999999999999999988765 678776654321 000000 00       0000000111111111111  135


Q ss_pred             CeEEEeCCCCCHHHHHHHHHh---cCCC-CcEEEEEecCHHHHHHHHhhc
Q 028388           99 DKFLIDGFPRNEENRAAFEAV---TKIE-PEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        99 ~~~i~dg~~~~~~~~~~~~~~---~~~~-~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ..+|+|++. .......+..+   .... ...+++|.++++++.+|...|
T Consensus        74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r  122 (189)
T 2bdt_A           74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR  122 (189)
T ss_dssp             CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS
T ss_pred             CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhc
Confidence            678999853 33333333321   1222 234788999999999999987

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.16  E-value=3.8e-10  Score=82.97  Aligned_cols=175  Identities=15%  Similarity=0.146  Sum_probs=68.1

Q ss_pred             CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHH-HHhC----------------------CceecHhHHHH
Q 028388            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIV-EHFG----------------------YTHLSAGDLLR   57 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~-~~l~----------------------~~~i~~~~~~~   57 (209)
                      ||+.-..-..  ..++....+.+|+|+||+||||||+++.|+ ..+.                      +...+. ..+.
T Consensus         9 ~~~~~~~~~~--~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~~   85 (231)
T 3lnc_A            9 MGTLEAQTQG--PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDR-EEFL   85 (231)
T ss_dssp             ---------------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCH-HHHH
T ss_pred             cchhhhcccC--CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecH-HHhh
Confidence            4554433322  233444567899999999999999999999 6652                      111122 1111


Q ss_pred             HHHHcCCchHHHHHHHH-HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcC-CCCcEEEEEecCHH
Q 028388           58 AEIKSGSENGTMIQNMI-KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTK-IEPEFVLFFDCSEE  135 (209)
Q Consensus        58 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~-~~~~~~i~L~~~~~  135 (209)
                      .....+....     .. ..+..+.  .....+...+.  .+..+++|..   ......+.. .. ..+..+++..++.+
T Consensus        86 ~~~~~~~~~~-----~~~~~~~~~~--~~~~~i~~~~~--~~~~vild~~---~~g~~~~~~-~~~~~~~~v~v~~~~~~  152 (231)
T 3lnc_A           86 RLCSNGEIIE-----HAEVFGNFYG--VPRKNLEDNVD--KGVSTLLVID---WQGAFKFME-MMREHVVSIFIMPPSME  152 (231)
T ss_dssp             HHHHTTCEEE-----EEEETTEEEE--EECTTHHHHHH--HTCEEEEECC---HHHHHHHHH-HSGGGEEEEEEECSCHH
T ss_pred             hhhhcCceeh-----hhhhccccCC--CCHHHHHHHHH--cCCeEEEEcC---HHHHHHHHH-hcCCCeEEEEEECCcHH
Confidence            1111100000     00 0000000  00111333333  2567888843   222223333 22 22333444566889


Q ss_pred             HHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          136 EMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       136 ~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ++.+|+..|  +  ....+.+.+++......    .+. ....+++++|.  +++++.+++.+.|..
T Consensus       153 ~l~~Rl~~R--~--~~~~~~i~~rl~~~~~~----~~~-~~~~d~vI~n~--~~e~~~~~l~~~i~~  208 (231)
T 3lnc_A          153 ELRRRLCGR--R--ADDSEVVEARLKGAAFE----ISH-CEAYDYVIVNE--DIEETADRISNILRA  208 (231)
T ss_dssp             HHHHC------------------CHHHHHHH----HTT-GGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc--C--CCCHHHHHHHHHHHHHH----Hhh-hcCCeEEEECc--CHHHHHHHHHHHHHH
Confidence            999999877  3  23445555555443332    111 22334555544  799999999888754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.07  E-value=4.8e-10  Score=79.88  Aligned_cols=164  Identities=16%  Similarity=0.233  Sum_probs=84.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc--eecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT--HLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAM-   93 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-   93 (209)
                      ...++.+|+|.|+|||||||+++.|+..++..  +++.+++.... ......+...+...      +.......+.... 
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~------~~~~v~~~l~~~~~   77 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ------QNRMIMQIAADVAG   77 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH------HHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchhh------hhHHHHHHHHHHHH
Confidence            34567899999999999999999999887543  67766654321 11100000000000      0011111111111 


Q ss_pred             -HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCC-cHHHHHHHHHHHHhhchhHH
Q 028388           94 -EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDD-NVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        94 -~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~  171 (209)
                       ....+..+++|+..... ....+.. . ..+...+++.++.+++..|...|  ..+.. .++....    ..+...++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~ls~~~~~~v~~~R~~~r--~~~~lld~~~~~~----~~~~~~~l~  148 (191)
T 1zp6_A           78 RYAKEGYFVILDGVVRPD-WLPAFTA-L-ARPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVAD----LHSQFADLG  148 (191)
T ss_dssp             HHHHTSCEEEECSCCCTT-TTHHHHT-T-CSCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHH----HHHHTTCCG
T ss_pred             HHhccCCeEEEeccCcHH-HHHHHHh-c-CCCeEEEEecCCHHHHHHHHHhc--CCCccCCHHHHHH----HHHHHhccC
Confidence             11135667888754322 2222322 1 22335899999999999999988  33221 2332222    112222221


Q ss_pred             HHHhhcCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388          172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       172 ~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~  201 (209)
                      . +   .. +++++ +.+++++++.|.+.+.
T Consensus       149 ~-~---~~-~~i~t~~~~~~~~~~~i~~~l~  174 (191)
T 1zp6_A          149 A-F---EH-HVLPVSGKDTDQALQSAINALQ  174 (191)
T ss_dssp             G-G---GG-GEEECTTCCTTTTTTTTHHHHH
T ss_pred             c-c---cc-cEEECCCCCHHHHHHHHHHHHH
Confidence            1 1   22 34554 4688888888877764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.07  E-value=4.1e-10  Score=86.42  Aligned_cols=121  Identities=12%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHH--HHcCCchHHHHHHHHHcCCCCCHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAE--IKSGSENGTMIQNMIKEGKIVPSEVTIKL   88 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (209)
                      ..+|.+|.|.|++||||||+++.|+..++       ..+++.|+++...  ......     ....+.......+.+.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~-----~~~~g~P~~~D~~~l~~~  163 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGL-----MKRKGFPESYDMPSLLRV  163 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTC-----GGGTTSGGGBCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHH-----HhhccCcccccHHHHHHH
Confidence            45688999999999999999999998875       4457776643211  000000     000111222333444444


Q ss_pred             HHHHHHhc------------------------CCCeEEEeCCCCCHHHH-----HHHHHhcCCCCcEEEEEecCHHHHHH
Q 028388           89 LQKAMEES------------------------GNDKFLIDGFPRNEENR-----AAFEAVTKIEPEFVLFFDCSEEEMER  139 (209)
Q Consensus        89 i~~~~~~~------------------------~~~~~i~dg~~~~~~~~-----~~~~~~~~~~~~~~i~L~~~~~~~~~  139 (209)
                      +.......                        ....+|+||........     ..+.. ....+|++||+++|.+++.+
T Consensus       164 L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~-l~~~~D~~I~Vda~~d~~~~  242 (321)
T 3tqc_A          164 LNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVF-VSDFFDFSLFVDAQAQVIQK  242 (321)
T ss_dssp             HHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCC-GGGGCSEEEEEECCHHHHHH
T ss_pred             HHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhh-hhhhcCeEEEEECCHHHHHH
Confidence            44433221                        13566888853222110     00000 11236899999999999999


Q ss_pred             HHhhc
Q 028388          140 RILNR  144 (209)
Q Consensus       140 R~~~r  144 (209)
                      |+..|
T Consensus       243 R~i~R  247 (321)
T 3tqc_A          243 WYIDR  247 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99998

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=99.04  E-value=2.4e-09  Score=80.88  Aligned_cols=161  Identities=12%  Similarity=0.113  Sum_probs=93.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ..+.+|+|.|..||||||.++.|.+.++   +.++....          .......    . ..         +.+....
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------Pt~eE~~----~-~y---------l~R~~~~  139 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK----------PTETERG----Q-WY---------FQRYVAT  139 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------CCHHHHT----S-CT---------THHHHTT
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------cChHHHh----c-hH---------HHHHHHh
Confidence            4689999999999999999999999996   33443211          0011110    0 10         1122222


Q ss_pred             c--CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028388           96 S--GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--  149 (209)
Q Consensus        96 ~--~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~--  149 (209)
                      .  .|..+|+|++..+.                   .+...|++.  ....|++.|||++++++..+|+..| .....  
T Consensus       140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~k~W  219 (304)
T 3czq_A          140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIW  219 (304)
T ss_dssp             CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTTTGG
T ss_pred             cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCccccc
Confidence            2  48999999765441                   112222111  2447899999999999999999887 22222  


Q ss_pred             CCcHHHHH--HHHHHHHhhchhHHHHHh-hcCcEEEEcCCCCh---HHHHHHHHHhcCcc
Q 028388          150 DDNVETIR--KRFKVFLESSLPVVQYYE-AKGKVRKIDAAKPV---AEVFDAVKAVFTPK  203 (209)
Q Consensus       150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~---ee~~~~i~~~i~~~  203 (209)
                      .....++.  +.+..|.+....+..... ....+++|+++.+.   -.+.+.|.+.|...
T Consensus       220 k~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~  279 (304)
T 3czq_A          220 KLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYD  279 (304)
T ss_dssp             GCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhc
Confidence            11333333  233344444434433333 23479999997533   45556666666543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.97  E-value=8.7e-10  Score=78.72  Aligned_cols=162  Identities=12%  Similarity=0.232  Sum_probs=79.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHH---cCCc----hHHHHHHHHHcCCCCCHH---
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIK---SGSE----NGTMIQNMIKEGKIVPSE---   83 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~---   83 (209)
                      .++..++.+|+|+||+|||||||++.|.+.+.- ...+.....+....   .+..    ....+...+..+.++...   
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~   92 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQ   92 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEET
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhh
Confidence            455567889999999999999999999987751 11111000000000   0000    011222222222211100   


Q ss_pred             -----HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028388           84 -----VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRK  158 (209)
Q Consensus        84 -----~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~  158 (209)
                           .....++..+.  .++.+|+|..+....   .+.. ....| ++||+..|.-       .|    ..+..+.+.+
T Consensus        93 ~n~YGt~~~~v~~~l~--~G~~vildid~qg~~---~~~~-~~~~~-~~Ifi~Pps~-------~~----~~e~~~~i~~  154 (197)
T 3ney_A           93 GNMFGTKFETVHQIHK--QNKIAILDIEPQTLK---IVRT-AELSP-FIVFIAPTDQ-------GT----QTEALQQLQK  154 (197)
T ss_dssp             TEEEEEEHHHHHHHHH--TTCEEEEECCGGGHH---HHCS-TTTCE-EEEEEEECCB-------SS----CCHHHHHHHH
T ss_pred             ceecccchhhHHHHHh--cCCeEEEEECHHHHH---HHHh-cCCCc-eEEEEeCCCc-------cc----cchHHHHHHH
Confidence                 11344555555  588999997543322   2222 22333 5777775531       12    1222333444


Q ss_pred             HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +....       ...+....+++++|.  ++++.++++.+.|...
T Consensus       155 r~~~~-------~~~~~~~fd~vivNd--~l~~a~~~l~~ii~~~  190 (197)
T 3ney_A          155 DSEAI-------RSQYAHYFDLSLVNN--GVDETLKKLQEAFDQA  190 (197)
T ss_dssp             HHHHH-------HHHHGGGCSEEEEES--CHHHHHHHHHHHHHHC
T ss_pred             HHHHH-------HHhhccCCCEEEECC--CHHHHHHHHHHHHHHc
Confidence            33211       111333345667766  5899999998887553

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.96  E-value=2.4e-09  Score=77.43  Aligned_cols=134  Identities=13%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHH--HHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRA--EIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   90 (209)
                      ..++.+|.|.|++|||||||++.|+..+.     ..+++.++....  .........     ............+...+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~   93 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLP-----RKGAPETFDFEGFQRLCH   93 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGG-----GTTSGGGBCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccc-----cCCCCchhhHHHHHHHHH
Confidence            35678999999999999999999999875     455665443211  100000000     000011122233333343


Q ss_pred             HHHHh----------------------cC-CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--c
Q 028388           91 KAMEE----------------------SG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--N  145 (209)
Q Consensus        91 ~~~~~----------------------~~-~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~  145 (209)
                      .....                      .. ...+|+||......+. .+.. .....|.+||++++.+++.+|+.+|  .
T Consensus        94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~-~~~~-l~~~~d~~i~vd~~~~~~~~R~~~R~~~  171 (208)
T 3c8u_A           94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP-GWRD-LTAIWDVSIRLEVPMADLEARLVQRWLD  171 (208)
T ss_dssp             HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST-TGGG-GGGTCSEEEEECCCHHHHHHHHHHHHHH
T ss_pred             HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc-hhHH-HHHhcCEEEEEeCCHHHHHHHHHHHHHh
Confidence            33221                      01 2567888743222110 1111 1234689999999999999999988  2


Q ss_pred             CCCCCCcHHHHHHHHH
Q 028388          146 QGREDDNVETIRKRFK  161 (209)
Q Consensus       146 ~~~~~~~~~~~~~~~~  161 (209)
                      .+.   ..+.+.+++.
T Consensus       172 ~g~---t~~~~~~~~~  184 (208)
T 3c8u_A          172 HGL---NHDAAVARAQ  184 (208)
T ss_dssp             TTC---CHHHHHHHHH
T ss_pred             cCC---CHHHHHHHHH
Confidence            233   4455555443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.95  E-value=1.6e-08  Score=73.68  Aligned_cols=167  Identities=16%  Similarity=0.243  Sum_probs=89.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHH---cCCc----hHHHHHHHHHc----------C
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIK---SGSE----NGTMIQNMIKE----------G   77 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~---~~~~----~~~~~~~~~~~----------~   77 (209)
                      -|.++.+++|.||+|||||||.+.|+..+..  ...+.....+....   .+..    ....+......          +
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~   91 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG   91 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence            4567889999999999999999999987641  11111000000000   0000    00111111110          0


Q ss_pred             CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028388           78 KIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (209)
Q Consensus        78 ~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~  157 (209)
                      ..+..  ....+...+.  .+..+|+|   ........+.+ .......+|+..-+.+++.+|+..|  +  .+.++.+.
T Consensus        92 ~~yg~--~~~~v~~~l~--~G~illLD---LD~~~~~~i~~-~l~~~~tI~i~th~~~~l~~Rl~~r--G--~~~~e~i~  159 (219)
T 1s96_A           92 NYYGT--SREAIEQVLA--TGVDVFLD---IDWQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--G--QDSEEVIA  159 (219)
T ss_dssp             EEEEE--EHHHHHHHHT--TTCEEEEE---CCHHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--S--CSCHHHHH
T ss_pred             ccCCC--CHHHHHHHHh--cCCeEEEE---ECHHHHHHHHH-HccCCEEEEEECCCHHHHHHHHHHc--C--CCCHHHHH
Confidence            11000  0223444444  37899999   45555555555 2333333555555788999999766  4  56778888


Q ss_pred             HHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +++.......    . +......+++|.  ++++.++++.+.|..
T Consensus       160 ~rl~~a~~e~----~-~~~~~d~~i~Nd--~l~~a~~~l~~ii~~  197 (219)
T 1s96_A          160 KRMAQAVAEM----S-HYAEYDYLIVND--DFDTALTDLKTIIRA  197 (219)
T ss_dssp             HHHHHHHHHH----T-TGGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----h-hccCCCEEEECc--CHHHHHHHHHHHHHH
Confidence            8776543321    1 122234555553  789999998888753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.94  E-value=3.6e-09  Score=86.88  Aligned_cols=163  Identities=14%  Similarity=0.097  Sum_probs=70.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC------CceecHhHHHHHHHHcCCchHH-HHHHHHHcCCCCCHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG------YTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKIVPSEVTIKLLQK   91 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~------~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~   91 (209)
                      .++.+|+|+|++||||||+++.|+..++      +.+++.+++... +.....+.. .......        .+....+.
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-l~~~l~f~~~~r~~~~r--------~i~~v~q~  437 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-LSSELGFSKAHRDVNVR--------RIGFVASE  437 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-TTSSCCCSHHHHHHHHH--------HHHHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-hccccCCCHHHHHHHHH--------HHHHHHHH
Confidence            4678999999999999999999999985      335776554332 111111111 0000000        00111111


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHh-cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           92 AMEESGNDKFLIDGFPRNEENRAAFEAV-TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~-~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                       +.. .+..++..+............++ ......++|||++|.+++.+|..+.   ......   ...+..+.....+ 
T Consensus       438 -l~~-~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~---l~~~~~---~~~i~~l~~~r~~-  508 (552)
T 3cr8_A          438 -ITK-NRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKG---LYAKAR---AGLIPEFTGVSDP-  508 (552)
T ss_dssp             -HHH-TTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------------CC-
T ss_pred             -HHh-cCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcccc---cccccc---HhHHHHHHhcccc-
Confidence             221 24555555432112222222221 1112347999999999999996532   111100   0011112111111 


Q ss_pred             HHHHh-hcCcEEEEcCC-CChHHHHHHHHHhcCc
Q 028388          171 VQYYE-AKGKVRKIDAA-KPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~-~~~~~~~id~~-~~~ee~~~~i~~~i~~  202 (209)
                        ++. .... +.+|++ .++++++++|...|..
T Consensus       509 --~e~P~~ad-l~Idt~~~s~~e~v~~Il~~L~~  539 (552)
T 3cr8_A          509 --YEVPETPE-LAIDTTGLAIDEAVQQILLKLEH  539 (552)
T ss_dssp             --CCCCSSCS-EEECCSSCCHHHHHHHHHHHHHH
T ss_pred             --ccCCCCCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence              111 1223 567764 6899999999988743

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.94  E-value=4.1e-09  Score=74.49  Aligned_cols=27  Identities=15%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++.+++|+||+||||||+++.|+..+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999998763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.90  E-value=2.1e-09  Score=82.59  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=32.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      ++.+|+|.||+|||||||+..|+++++..+||.|..
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            567999999999999999999999999999998664

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.89  E-value=3.6e-09  Score=81.12  Aligned_cols=37  Identities=14%  Similarity=0.294  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDL   55 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~   55 (209)
                      .++.+|.|+|++||||||+++.|+..++       ..+++.|+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            5678999999999999999999999876       455665543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.88  E-value=2.4e-08  Score=71.62  Aligned_cols=162  Identities=15%  Similarity=0.230  Sum_probs=80.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----------------------CceecHhHHHHHHHHcCCchHHHHHHHH-
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----------------------YTHLSAGDLLRAEIKSGSENGTMIQNMI-   74 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~-   74 (209)
                      +.+.+++|.||+||||||+++.|...+.                       +..++. +.++..+..+....     .. 
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~-~~~~~~i~~~~~l~-----~~~   75 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTR-EMMQRDIAAGDFIE-----HAE   75 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCH-HHHHHHHHHTCEEE-----EEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccH-HHHHHHHHcCCCEe-----eee
Confidence            3467899999999999999999988653                       111222 11222211110000     00 


Q ss_pred             HcCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcH
Q 028388           75 KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      -.++.+.  .....+.+.+.  .+..+++|-.   ......... ....|. .++|.. +.+++.+|...|    ..+..
T Consensus        76 ~~~n~~g--~~~~~i~~~~~--~~~~~~~~~~---~~g~~~~~~-~~~~~~-~~~l~~p~~~ilde~~~~~----d~~~e  142 (198)
T 1lvg_A           76 FSGNLYG--TSKEAVRAVQA--MNRICVLDVD---LQGVRSIKK-TDLCPI-YIFVQPPSLDVLEQRLRLR----NTETE  142 (198)
T ss_dssp             ETTEEEE--EEHHHHHHHHH--TTCEEEEECC---HHHHHHHTT-SSCCCE-EEEEECSCHHHHHHHHHHH----TCSCH
T ss_pred             ecCccCC--CCHHHHHHHHH--cCCcEEEECC---HHHHHHHHh-cCCCcE-EEEEeCCCHHHHHHHHHhc----CCCCH
Confidence            0000000  00223344443  2456666632   222222222 233443 355554 567889998877    33456


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.+.+++...........  .....+.++++.  +++++++++.+.|...
T Consensus       143 ~~i~~~l~~~~~~~~~a~--~~~~~D~iivnd--~le~a~~~l~~ii~~~  188 (198)
T 1lvg_A          143 ESLAKRLAAARTDMESSK--EPGLFDLVIIND--DLDKAYATLKQALSEE  188 (198)
T ss_dssp             HHHHHHHHHHHHHTTGGG--STTTCSEEEECS--SHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHhh--ccCCceEEEECC--CHHHHHHHHHHHHHHH
Confidence            777777765543211000  112234555554  6899999999888654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.85  E-value=9.7e-07  Score=61.63  Aligned_cols=156  Identities=18%  Similarity=0.165  Sum_probs=83.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      +.-.++.+++|.|++||||||+++.+.  .+...++. +.++..+........ +...       ..+.........+. 
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~-d~~~g~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~-   71 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKKHF--KPTEVISS-DFCRGLMSDDENDQT-VTGA-------AFDVLHYIVSKRLQ-   71 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEH-HHHHHHHCSSTTCGG-GHHH-------HHHHHHHHHHHHHH-
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHc--cCCeEEcc-HHHHHHhcCcccchh-hHHH-------HHHHHHHHHHHHHh-
Confidence            334567899999999999999999864  34556665 444544333211000 0000       00111112222222 


Q ss_pred             cCCCeEEEeCCCCCHHH---HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           96 SGNDKFLIDGFPRNEEN---RAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~---~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                       .+...++|..+.....   +-.+.+ .....-.+++|+.|...+-.|...|  .....+.+.+........+....+  
T Consensus        72 -~g~~~~~~~~~~~s~g~~qrv~iAr-al~~~p~~lllDEPt~~Ld~~~~~R--~~~~~~~~vi~~~~~~l~~~l~~l--  145 (171)
T 4gp7_A           72 -LGKLTVVDATNVQESARKPLIEMAK-DYHCFPVAVVFNLPEKVCQERNKNR--TDRQVEEYVIRKHTQQMKKSIKGL--  145 (171)
T ss_dssp             -TTCCEEEESCCCSHHHHHHHHHHHH-HTTCEEEEEEECCCHHHHHHHHHTC--SSCCCCHHHHHHHHHHHHHHSTTH--
T ss_pred             -CCCeEEEECCCCCHHHHHHHHHHHH-HcCCcEEEEEEeCCHHHHHHHHhcc--cCCCCCHHHHHHHHHHhhhhhhhH--
Confidence             3677788876544332   223333 3333335888999999999999988  333445555555444444443333  


Q ss_pred             HHhhcCcEEEEcCCCChHHH
Q 028388          173 YYEAKGKVRKIDAAKPVAEV  192 (209)
Q Consensus       173 ~~~~~~~~~~id~~~~~ee~  192 (209)
                       .++...++.+..  +.+++
T Consensus       146 -~~~g~tvi~vtH--~~~~~  162 (171)
T 4gp7_A          146 -QREGFRYVYILN--SPEEV  162 (171)
T ss_dssp             -HHHTCSEEEEEC--SHHHH
T ss_pred             -HhcCCcEEEEeC--CHHHh
Confidence             223224455544  44444

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.68  E-value=6.9e-08  Score=78.12  Aligned_cols=160  Identities=11%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ..+.+|+|.|..||||+|.++.|.+.++   +.++....          +.....    .+ ..         +.+....
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~----~~-~y---------l~R~~~~  353 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER----AQ-PY---------LWRFWRH  353 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH----TS-CT---------THHHHTT
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh----cc-hH---------HHHHHHh
Confidence            4688999999999999999999999996   43443211          000000    00 11         1122222


Q ss_pred             c--CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC-
Q 028388           96 S--GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED-  150 (209)
Q Consensus        96 ~--~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~-  150 (209)
                      .  .|..+|+|++..+.                   .+...|++.  ....+.+.|||++++++..+|+..| ...... 
T Consensus       354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~W  433 (500)
T 3czp_A          354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRY  433 (500)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTTS
T ss_pred             CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence            2  38999999865441                   122222221  4456889999999999999999998 321110 


Q ss_pred             -CcHHHHH--HHHHHHHhhchhHHHHHhhc-CcEEEEcCCCC---hHHHHHHHHHhcCc
Q 028388          151 -DNVETIR--KRFKVFLESSLPVVQYYEAK-GKVRKIDAAKP---VAEVFDAVKAVFTP  202 (209)
Q Consensus       151 -~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~id~~~~---~ee~~~~i~~~i~~  202 (209)
                       ..+.++.  ++...|.+....++...... .++++|+++..   --.+.+.|.+.|..
T Consensus       434 k~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~dk~~arl~v~~~i~~~l~~  492 (500)
T 3czp_A          434 KITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEA  492 (500)
T ss_dssp             CCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCCccchHHHHHHHHHHHHHH
Confidence             0111111  12223433333344433322 37999999741   23444555544443

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.66  E-value=7.3e-08  Score=77.98  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC---ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY---THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      ..+.+|+|.|..||||+|.++.|.+.++-   .++....          +......    . ..         +.+....
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~~----~-~y---------l~R~~~~   96 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEELE----R-PP---------QWRFWRR   96 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHHT----S-CT---------THHHHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhcc----C-Ch---------hhhHHHh
Confidence            57899999999999999999999999963   3333211          0000000    0 00         1112222


Q ss_pred             c--CCCeEEEeCCCCC-------------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCC--
Q 028388           96 S--GNDKFLIDGFPRN-------------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRE--  149 (209)
Q Consensus        96 ~--~~~~~i~dg~~~~-------------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~--  149 (209)
                      .  .|..+|+|++..+                   ..+...|+..  ....+.+.|||++++++..+|+..| .....  
T Consensus        97 lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p~k~W  176 (500)
T 3czp_A           97 LPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSW  176 (500)
T ss_dssp             CCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-----------
T ss_pred             CCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCCcccC
Confidence            2  4888999975432                   1122222221  5667889999999999999999998 21111  


Q ss_pred             -----C-CcHHHHHHHHHHHHhhchhHHHHHhh-cCcEEEEcCCC---ChHHHHHHHHHhcC
Q 028388          150 -----D-DNVETIRKRFKVFLESSLPVVQYYEA-KGKVRKIDAAK---PVAEVFDAVKAVFT  201 (209)
Q Consensus       150 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~---~~ee~~~~i~~~i~  201 (209)
                           + ...+    ++..|.+....++..... ..++++|+++.   ....+.+.|.+.|.
T Consensus       177 k~s~~D~~~~~----~~~~Y~~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~  234 (500)
T 3czp_A          177 KLSPLDWKQSE----VYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQ  234 (500)
T ss_dssp             --CSSCTTSHH----HHHHHHHHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH----hHHHHHHHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHH
Confidence                 1 1122    222333333333332332 23799999974   12344455544443

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.57  E-value=7.6e-07  Score=66.42  Aligned_cols=144  Identities=10%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC---CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG---YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      .+.+|++.|..||||++.++.|.+.++   +.+++...          ....+    ..          ...+.+.....
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~----------Pt~eE----~~----------~~ylwR~~~~l  129 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA----------PTDEE----KS----------HDFLWRIEKQV  129 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS----------CCHHH----HT----------SCTTHHHHTTC
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC----------CChhh----hc----------CCHHHHHHHhC
Confidence            588999999999999999999999996   33333211          00000    00          01122233232


Q ss_pred             --CCCeEEEeCCCCCH-------------------HHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-cCCCCC--
Q 028388           97 --GNDKFLIDGFPRNE-------------------ENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-NQGRED--  150 (209)
Q Consensus        97 --~~~~~i~dg~~~~~-------------------~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~--  150 (209)
                        .|..+|+|++.++.                   .++..|++.  ......+-+||+++.++..+|+..| ......  
T Consensus       130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK  209 (289)
T 3rhf_A          130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWK  209 (289)
T ss_dssp             CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGG
T ss_pred             CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCccccc
Confidence              38999999765441                   223333332  3444556899999999999999998 322221  


Q ss_pred             CcHHHHHH--HHHHHHhhchhHHHHHhh-cCcEEEEcCCC
Q 028388          151 DNVETIRK--RFKVFLESSLPVVQYYEA-KGKVRKIDAAK  187 (209)
Q Consensus       151 ~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~id~~~  187 (209)
                      -.+.++.+  +...|.+....++..... ..++++|+++.
T Consensus       210 ~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add  249 (289)
T 3rhf_A          210 YSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK  249 (289)
T ss_dssp             CCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence            23344443  234455544444444432 25899999973

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.55  E-value=2.7e-08  Score=76.17  Aligned_cols=35  Identities=17%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      +++|+|+||+||||||++..|+++++..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            46899999999999999999999999999998654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.50  E-value=6.5e-08  Score=74.52  Aligned_cols=34  Identities=18%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      ++|+|+||+||||||+|..|++.++..+++.|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            6899999999999999999999999999998775

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.49  E-value=8.2e-08  Score=72.84  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      +.|.+|+|+||+|||||||+..|+++++..+++.|.
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            346799999999999999999999999988888654

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.49  E-value=3.6e-07  Score=69.37  Aligned_cols=163  Identities=16%  Similarity=0.213  Sum_probs=85.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCHH-----
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE-----   83 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~-----   83 (209)
                      +..+.+|+|+||   ||+||++.|.+.+.- ..++.....|....+   +..     ..+.+...+..+.++...     
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~  178 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSH  178 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCc
Confidence            456678999998   799999999987631 112221122211110   000     122333333333332111     


Q ss_pred             ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus        84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                         .....++..+.  .+..+|+|..+....   .+.. ....| ++||+.+|.-..++++.+|  +    ..+.+.+++
T Consensus       179 ~YGt~~~~V~~~~~--~G~~vildid~~g~~---~l~~-~~~~p-i~IfI~pps~~~L~~L~~R--~----t~~~i~~rl  245 (295)
T 1kjw_A          179 LYGTSVQSVREVAE--QGKHCILDVSANAVR---RLQA-AHLHP-IAIFIRPRSLENVLEINKR--I----TEEQARKAF  245 (295)
T ss_dssp             EEEEEHHHHHHHHH--TTCEEEECCCTTHHH---HHHH-TTCCC-EEEEECCSSHHHHHHHCTT--S----CHHHHHHHH
T ss_pred             EeeeeHHHHHHHHh--cCCeEEEEeCHHHHH---HHHh-cccCC-eEEEEECCCHHHHHHHHhc--C----CHHHHHHHH
Confidence               11445666665  488999996543222   2333 33445 8899987754444446655  3    224456665


Q ss_pred             HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ......    ...+...-..++ .++ ++++.++++...|..
T Consensus       246 ~~a~~~----e~~~~~~fd~vi-vNd-~le~a~~~l~~ii~~  281 (295)
T 1kjw_A          246 DRATKL----EQEFTECFSAIV-EGD-SFEEIYHKVKRVIED  281 (295)
T ss_dssp             HHHHHH----HHHHGGGCSEEE-CCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHhccccCeEEE-ECc-CHHHHHHHHHHHHHh
Confidence            554221    111222334444 444 799999999888754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.48  E-value=7e-08  Score=73.32  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDL   55 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~   55 (209)
                      ++++|+|.||+|||||||+..|++.++..+|+.|..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            467899999999999999999999999888876543

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.38  E-value=3.4e-07  Score=67.42  Aligned_cols=40  Identities=18%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~   61 (209)
                      ++|.|+|++||||||+++.|++++|+++++.++.+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            5899999999999999999999999999998887776643

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.29  E-value=4e-07  Score=71.54  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      +++|+|.||+|||||||+..|++.++..+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            4589999999999999999999999998888755

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.28  E-value=6.1e-07  Score=68.20  Aligned_cols=38  Identities=37%  Similarity=0.732  Sum_probs=30.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce--ecHhHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDL   55 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~--i~~~~~   55 (209)
                      ...|..+++.||||+|||++|+.|++.++.++  ++.+++
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l   72 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL   72 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence            34567899999999999999999999998655  444444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.21  E-value=1.7e-06  Score=60.84  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAE   59 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~~   59 (209)
                      ....+..++|.|+||+||||+++.++..+    |  ..+++..++....
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~   82 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL   82 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            33457789999999999999999999877    3  3556666655443

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.21  E-value=7.4e-07  Score=72.42  Aligned_cols=36  Identities=6%  Similarity=0.039  Sum_probs=31.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC-------ceecHhH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY-------THLSAGD   54 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~-------~~i~~~~   54 (209)
                      .++++|+|+|++||||||+++.|+++|+.       .+++.|+
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            35689999999999999999999999986       5676655

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.2e-06  Score=69.85  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=31.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+..+.|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus       209 ~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          209 DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            3344557789999999999999999999999977654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.18  E-value=1.3e-06  Score=66.19  Aligned_cols=40  Identities=30%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------Ccee-cHhHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHL-SAGDLL   56 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i-~~~~~~   56 (209)
                      ...+|.+|.|.|++||||||+++.|+..++       ...+ +.|+++
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            345788999999999999999999998885       2344 776654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=1.3e-06  Score=69.44  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +....|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus       201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~  236 (428)
T 4b4t_K          201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR  236 (428)
T ss_dssp             HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence            334556789999999999999999999999977655

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.2e-06  Score=69.04  Aligned_cols=38  Identities=21%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+....|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus       175 ~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          175 ESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             HHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             HhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            33334456779999999999999999999999977755

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.4e-06  Score=69.43  Aligned_cols=37  Identities=27%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+...-|+-|++.||||+|||++|+.||.+++++++.
T Consensus       209 ~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          209 RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3334456789999999999999999999999977654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.16  E-value=4.1e-05  Score=57.92  Aligned_cols=163  Identities=10%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCHH-----
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE-----   83 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~-----   83 (209)
                      ...++.|+|+||   ||+|+.+.|.+.+.-.+ .+.....|....+   +..     ..+.+...+..+.++...     
T Consensus        97 ~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn  173 (292)
T 3tvt_A           97 INYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDN  173 (292)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccc
Confidence            355667888988   59999999998874221 2211111111000   000     112233333333222111     


Q ss_pred             ---HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHH
Q 028388           84 ---VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKR  159 (209)
Q Consensus        84 ---~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~  159 (209)
                         .....+.+.+.  .++.+|+|-.+   .-...+.. ....| ++||+..|. +++.+|+..|    ..+..+.+..+
T Consensus       174 ~YGT~~~~V~~~~~--~gk~viLdid~---qg~~~lk~-~~~~p-i~IFI~PpS~e~L~~r~~~r----~~e~~~~~~~r  242 (292)
T 3tvt_A          174 LYGTSVASVREVAE--KGKHCILDVSG---NAIKRLQV-AQLYP-VAVFIKPKSVDSVMEMNRRM----TEEQAKKTYER  242 (292)
T ss_dssp             EEEEEHHHHHHHHH--HTCEEEECCCT---HHHHHHHH-TTCCC-EEEEECCSCHHHHHHTCTTS----CTTHHHHHHHH
T ss_pred             eeEEehHHHHHHHH--cCCcEEEeccc---hhhhhccc-ccccc-eEEEEECCCHHHHHHHHhCC----CchhHHHHHHH
Confidence               11455666665  37899999543   33333444 44455 678887754 5566655543    34444555544


Q ss_pred             HHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          160 FKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .....       ..+.+.-+.+++|.  ++++.++++.+.|.+.
T Consensus       243 ~~k~e-------~e~~~~fD~vIvNd--dle~a~~~l~~iI~~e  277 (292)
T 3tvt_A          243 AIKME-------QEFGEYFTGVVQGD--TIEEIYSKVKSMIWSQ  277 (292)
T ss_dssp             HHHHH-------HHHTTTCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HhhhhhCCEEEECc--CHHHHHHHHHHHHHHh
Confidence            33221       12233334545544  7899999999888553

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.15  E-value=1.3e-06  Score=62.02  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      .+..|+|+|++||||||+|..|+++.+ .+++.|
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD   65 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD   65 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence            467899999999999999999999877 676653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.13  E-value=2.2e-06  Score=63.68  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .|.-++|.|+||+||||+++.|+..++.+++.
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   75 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence            35569999999999999999999999865544

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.12  E-value=3.3e-05  Score=65.73  Aligned_cols=164  Identities=16%  Similarity=0.197  Sum_probs=88.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCC-ceecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCH------
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGY-THLSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPS------   82 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~-~~i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~------   82 (209)
                      ...++.|+|+||   ||+||.+.|.+.+.- ..++.....|....+   +..     ..+.+...+..+.++..      
T Consensus       528 ~~~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~  604 (721)
T 2xkx_A          528 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH  604 (721)
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence            345678999999   499999999987741 223333334432111   111     12334444444443321      


Q ss_pred             --HHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388           83 --EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus        83 --~~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                        -.....++..+.  .++.+|+|..+   .-...+.. ....| ++||+..+.-..++++..|  +.    .+.+.+++
T Consensus       605 ~YGt~~~~v~~~~~--~g~~~ildi~~---~~~~~l~~-~~~~p-~~ifi~pps~~~L~~l~~R--~t----~~~~~~rl  671 (721)
T 2xkx_A          605 LYGTSVQSVREVAE--QGKHCILDVSA---NAVRRLQA-AHLHP-IAIFIRPRSLENVLEINKR--IT----EEQARKAF  671 (721)
T ss_pred             cceeeHHHHHHHHH--CCCcEEEeCCH---HHHHHHHh-cccCC-EEEEEeCCcHHHHHHHhcc--CC----HHHHHHHH
Confidence              112555666665  48899999642   22223332 23345 7899997765555557666  32    24455555


Q ss_pred             HHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          161 KVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      ....+.    ...+.....++++ ++ ++++.++++...|...
T Consensus       672 ~~a~~~----e~~~~~~fd~vi~-Nd-~l~~a~~~l~~~i~~~  708 (721)
T 2xkx_A          672 DRATKL----EQEFTECFSAIVE-GD-SFEEIYHKVKRVIEDL  708 (721)
T ss_pred             HHHHHH----HHhccccCcEEEE-Cc-CHHHHHHHHHHHHHhc
Confidence            544221    1111222234444 44 7999999999888653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.12  E-value=2.5e-06  Score=63.42  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+.-++|.|+||+||||+|+.+++.++.+++.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            456679999999999999999999999876653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.8e-06  Score=68.89  Aligned_cols=38  Identities=24%  Similarity=0.445  Sum_probs=31.7

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+...-|+-|++.||||+|||++|+.||.+++.+++.
T Consensus       236 ~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          236 ATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             HHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             HHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            33444567789999999999999999999999977755

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.09  E-value=2.4e-06  Score=65.13  Aligned_cols=41  Identities=22%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCcee--cHhHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL--SAGDLLRAE   59 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i--~~~~~~~~~   59 (209)
                      ..+..++|.|+||+||||+|+.|+..++..++  +..++....
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~   89 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   89 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence            45678999999999999999999999986654  455555443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.09  E-value=2.5e-06  Score=64.34  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+..++|.|+||+||||+++.+++.++..++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            456779999999999999999999999876654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.1e-06  Score=67.00  Aligned_cols=37  Identities=27%  Similarity=0.475  Sum_probs=31.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+...-|+-|++.||||+|||++|+.+|.+++.+++.
T Consensus       210 ~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            3444556789999999999999999999999977755

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.05  E-value=2.7e-06  Score=59.79  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +.++|.|++||||||+++.|+..++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999998863

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.03  E-value=4.4e-06  Score=63.40  Aligned_cols=32  Identities=22%  Similarity=0.395  Sum_probs=27.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+..++|.|+||+||||+|+.+++.++.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            35689999999999999999999999866543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.02  E-value=4.3e-06  Score=62.70  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=29.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...+..++|.|+||+|||++|+.+++.++.+++..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            34566899999999999999999999999776543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.01  E-value=7.7e-07  Score=68.84  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=29.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      .+.......|+|.|+|||||||+++.|++.+++.+
T Consensus        18 ~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           18 RIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             TTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             HhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            34444556799999999999999999999998777

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.01  E-value=3.1e-06  Score=61.43  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=24.2

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++...++.+++|.||+||||||+++.|+..+
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3455677899999999999999999999866

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.00  E-value=4.4e-06  Score=59.60  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +...++|.||||+||||+|..|++.++..+++
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            34579999999999999999999998755544

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.99  E-value=3.5e-06  Score=67.31  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      .|..|++.||||+||||+++.|++.++.+++..
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v   81 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCceee
Confidence            356799999999999999999999999777654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.99  E-value=5.7e-06  Score=63.36  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++.+|.|.|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4668899999999999999999999876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.97  E-value=6.8e-06  Score=61.80  Aligned_cols=29  Identities=24%  Similarity=0.457  Sum_probs=25.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .-++|.||||+||||+++.|+..++...+
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            33999999999999999999999875444

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.97  E-value=6.2e-06  Score=63.43  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +.-++|.||||+|||++|+.+++.++..++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            4679999999999999999999999876654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.96  E-value=1.1e-05  Score=57.58  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAE   59 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~   59 (209)
                      +..++|.|+||+||||+++.++..+   +  +.+++..++....
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL   97 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH
Confidence            3789999999999999999999877   3  3446666655443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.96  E-value=4.2e-06  Score=65.48  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      .+..++|.||||+|||++|+.|++.++.+++..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            345689999999999999999999998777653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.96  E-value=6.7e-06  Score=64.49  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ....+.+++|.|||||||||+++.|+..++..++.
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            44567899999999999999999999998876655

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.94  E-value=7.1e-06  Score=57.63  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+..++|.|+||+||||+++.+++.+
T Consensus        40 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           40 RRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3456778999999999999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.93  E-value=7.4e-06  Score=62.33  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .+..++|.|+||+|||++|+.+++.++.+++
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4567899999999999999999999986554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.92  E-value=6.9e-06  Score=63.52  Aligned_cols=29  Identities=28%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      +..++|.||||+||||+++.|+..++..+
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            46799999999999999999999997543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.91  E-value=7.7e-06  Score=57.26  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            446678999999999999999999987

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.90  E-value=8.7e-06  Score=60.35  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .-++|.|+||+||||+++.|+..++...+.
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~   79 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEARVPFIT   79 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            349999999999999999999988754443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.90  E-value=8.8e-06  Score=62.61  Aligned_cols=30  Identities=20%  Similarity=0.354  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCcee
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTHL   50 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~i   50 (209)
                      +.-|+|.||||+|||++|+.+++.+ +..++
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            4679999999999999999999998 55443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.90  E-value=9e-06  Score=56.45  Aligned_cols=25  Identities=32%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+++.|.|++||||||++..|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999999876

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.88  E-value=3.3e-06  Score=63.09  Aligned_cols=31  Identities=26%  Similarity=0.451  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      |.-++|.|+||+||||+|+.|++.++.+++.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            4458899999999999999999999876654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.88  E-value=8.7e-06  Score=69.58  Aligned_cols=39  Identities=23%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             cccccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +..+...-|.-|++.||||+|||++|+.++.++|..++.
T Consensus       230 f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~  268 (806)
T 3cf2_A          230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (806)
T ss_dssp             GTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred             HhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence            344444557789999999999999999999999976654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.87  E-value=8.1e-06  Score=64.11  Aligned_cols=31  Identities=19%  Similarity=0.387  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +..++|.|+||+||||+|+.|++.++.+++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4568999999999999999999999866654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.87  E-value=1e-05  Score=63.16  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +.-|+|.||||+|||++|+.+++.++..++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            3468999999999999999999999976654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.87  E-value=1.7e-05  Score=60.92  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRA   58 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~   58 (209)
                      .+..++|.|+||+||||+++.+++.+   +  +.+++..++...
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~   79 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA   79 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence            35679999999999999999999987   4  455666665443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.86  E-value=1.2e-05  Score=61.29  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..++|.|+||+|||++|+.+++.+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999999988

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.85  E-value=1.1e-05  Score=55.01  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ....++|.|++|+||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999877

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.85  E-value=1.3e-05  Score=62.57  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+..|+|.|+||+||||+|+.+++.++..++.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            346689999999999999999999999876643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.85  E-value=1.1e-05  Score=58.90  Aligned_cols=27  Identities=11%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+..++|.|+||+||||+++.+++.++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999998874

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.85  E-value=1.1e-05  Score=58.03  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=24.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ....++.+++|.|++||||||+++.|+..+.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3445678999999999999999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.84  E-value=1.6e-05  Score=64.24  Aligned_cols=32  Identities=19%  Similarity=0.411  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      -|.-++|.||||+||||+++.++..++.+++.
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            34559999999999999999999999876654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.84  E-value=1.3e-05  Score=55.07  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=26.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +....+.+++|.|+.|||||||.+.|+..+
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            334567799999999999999999999877

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.82  E-value=0.00044  Score=52.47  Aligned_cols=145  Identities=11%  Similarity=0.124  Sum_probs=75.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      ...++-|+|+||   ||+|+.+.|.+.+.-.+ ++.. .-+.               +..+.+++    ...++..+.  
T Consensus       142 ~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~-~~r~---------------i~~~~fis----~~~V~~vl~--  196 (308)
T 3kfv_A          142 ASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAET-VSRT---------------DSPSKIIK----LDTVRVIAE--  196 (308)
T ss_dssp             CSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCC-C-----------------------CCC----HHHHHHHHH--
T ss_pred             cCCCCeEEEeCc---cHHHHHHHHHHhCccccccccc-cccc---------------ccCCCeec----HHHHHHHHH--
Confidence            445666899999   79999999988775222 1110 0000               22334443    344555555  


Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHh
Q 028388           97 GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus        97 ~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      .++.+|+|=   ...-...+.. ....| ++||+..|. +++.+| .+|  +. .+..+.+.+++....+    +...+.
T Consensus       197 ~Gk~~ILDI---d~QGa~~lk~-~~~~p-i~IFI~PPS~eeL~~r-r~R--~~-~esee~~~r~~~aa~e----iE~~~~  263 (308)
T 3kfv_A          197 KDKHALLDV---TPSAIERLNY-VQYYP-IVVFFIPESRPALKAL-RQW--LA-PASRRSTRRLYAQAQK----LRKHSS  263 (308)
T ss_dssp             TTCEEEECC---CHHHHHHHHH-TTCCC-EEEEEEESCHHHHHHH-HHH--HS-TTCCCCHHHHHHHHHH----HHHHHG
T ss_pred             CCCcEEEEE---CHHHHHHHHh-cCCCC-EEEEEeCCCHHHHHHH-Hhc--CC-CCCHHHHHHHHHHHHH----HHHhhh
Confidence            589999993   3343344444 45556 566666654 556655 444  11 1111223333222211    112233


Q ss_pred             hcCcEEE-EcCCCChHHHHHHHHHhcCc
Q 028388          176 AKGKVRK-IDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       176 ~~~~~~~-id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..-+.++ +|.  ++++.++++...|..
T Consensus       264 ~~FD~vI~VND--dle~A~~~L~~iI~~  289 (308)
T 3kfv_A          264 HLFTATIPLNG--TSDTWYQELKAIIRE  289 (308)
T ss_dssp             GGCSEEEEECS--SSTHHHHHHHHHHHH
T ss_pred             ccCcEEEEcCC--CHHHHHHHHHHHHHH
Confidence            3344555 665  567788888877754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.82  E-value=1.5e-05  Score=59.98  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      -++|.|+||+||||+++.|+..++...+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~  103 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFIT  103 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence            39999999999999999999988754443

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.81  E-value=1.5e-05  Score=61.48  Aligned_cols=32  Identities=19%  Similarity=0.117  Sum_probs=27.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+..++|.|+||+||||+|+.+++.++.+++.
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            34568999999999999999999999876654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.81  E-value=1.7e-05  Score=55.47  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+++|+|++||||||+++.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998875

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.80  E-value=1.6e-05  Score=65.07  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=28.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+..++|+||||+||||+|+.+++.+++.++.
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            35689999999999999999999999977654

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.78  E-value=1.9e-05  Score=63.73  Aligned_cols=31  Identities=26%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC--Cceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~   51 (209)
                      |.-+++.||||+|||++|+.+++.++  .+++.
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~   95 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP   95 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence            45799999999999999999999998  55543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.77  E-value=2.3e-05  Score=59.73  Aligned_cols=30  Identities=27%  Similarity=0.605  Sum_probs=26.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +....+.+++|.|++||||||+++.|+..+
T Consensus        95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            334568899999999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.77  E-value=2.2e-05  Score=59.83  Aligned_cols=28  Identities=36%  Similarity=0.738  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...|.+|+|+|++||||||++..|+..+
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            4567899999999999999999999876

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.76  E-value=1.8e-05  Score=60.25  Aligned_cols=35  Identities=23%  Similarity=0.516  Sum_probs=28.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      +.-+++.+++|.|++|||||||++.|+..+...++
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~  155 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL  155 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence            44567789999999999999999999988754443

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.76  E-value=1.3e-05  Score=56.20  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +++|+|++||||||+|..|+.. +.+
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCC
Confidence            3799999999999999999977 643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.75  E-value=2.4e-05  Score=61.72  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +.-++|.|+||+|||++|+.+++.++..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            5689999999999999999999999876654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.75  E-value=2e-05  Score=57.36  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            458999999999999999999998853

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.74  E-value=2.4e-05  Score=59.60  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+++|.|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999776

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.73  E-value=1.9e-05  Score=53.45  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=21.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-|+|.|+||+|||++|+.|.+..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3458999999999999999998865

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.73  E-value=2.7e-05  Score=59.98  Aligned_cols=28  Identities=36%  Similarity=0.570  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+|.+++|.|++||||||+++.|+..+
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999999876

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.72  E-value=2e-05  Score=63.39  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .++..++|.|+||+||||+++.|++.++..++.
T Consensus        48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           48 GHLHSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            445679999999999999999999999866554

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.70  E-value=3.3e-05  Score=60.14  Aligned_cols=30  Identities=27%  Similarity=0.605  Sum_probs=26.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+|.+++|.|++||||||+++.|+..+
T Consensus       152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            344568899999999999999999999876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.70  E-value=3.1e-05  Score=57.72  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .....+++|+||+||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            4556799999999999999999998765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.69  E-value=1.7e-05  Score=58.18  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.||+|||||||.+.|+-.+
T Consensus        25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3445677899999999999999999998655

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.69  E-value=3.6e-05  Score=60.36  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999999987

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.69  E-value=2.8e-05  Score=62.51  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=27.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-CCce--ecHhHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-GYTH--LSAGDLLRA   58 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-~~~~--i~~~~~~~~   58 (209)
                      +.-|+|.||||+|||++|+.++..+ +..+  ++..++...
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            4679999999999999999999998 5544  455555443

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.69  E-value=2.7e-05  Score=60.93  Aligned_cols=28  Identities=21%  Similarity=0.417  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+..++|.|+||+||||+++.+++.+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3557789999999999999999999988

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.68  E-value=2.3e-05  Score=56.27  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++..++|.|+||+||||+++.+++.+
T Consensus        37 ~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           37 NIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34459999999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.68  E-value=2.7e-05  Score=60.75  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=24.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +..++|.||||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            358999999999999999999999974

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.67  E-value=1.6e-05  Score=60.81  Aligned_cols=30  Identities=7%  Similarity=0.216  Sum_probs=27.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+|..++|.||||+|||++++.+++.+
T Consensus        40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999999999999988

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.67  E-value=2.8e-05  Score=55.06  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+++|.|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            368999999999999999999877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.67  E-value=3.4e-05  Score=58.73  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.3

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|. .++|.|+||+||||+|+.|++.+
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence            344 79999999999999999999987

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.67  E-value=3.2e-05  Score=59.35  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=28.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      .|..+++.|+||+||||+++.+++.++..++..
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            456889999999999999999999998666543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.66  E-value=3.7e-05  Score=60.10  Aligned_cols=27  Identities=26%  Similarity=0.567  Sum_probs=24.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+||||+++.+++.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999987

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.66  E-value=3.9e-05  Score=61.95  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=26.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...++.+|+|.|++||||||+++.|+..+
T Consensus       288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          288 VEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            445678899999999999999999999876

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.66  E-value=0.00072  Score=54.38  Aligned_cols=151  Identities=9%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +..++.|+|+||+|+|   |++.|.+.+.-.+.+.  ..| . ..+...+.       +..+.    ....++..+.  .
T Consensus       221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~--~TR-p-R~gE~dG~-------~Y~FT----s~~~V~~vl~--~  280 (468)
T 3shw_A          221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQIA--KSE-P-RDAGTDQR-------SSGII----RLHTIKQIID--Q  280 (468)
T ss_dssp             CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC--CCB-C------------------CBC----CHHHHHHHHT--T
T ss_pred             CCCCCEEEEECCCHHH---HHHHHHHhCCCceeee--cCC-C-CCcccccc-------cCCcc----cHHHHHHHHH--C
Confidence            4567889999999999   8888887765333332  112 1 11111111       01122    2455666665  5


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      ++.+|+|=   ..+-...+.. ....| ++||+..|.-..++++.+|  .. .+..+.+.+++....+    +...|...
T Consensus       281 Gk~~iLdI---d~qg~~~l~~-~~~~p-~~IFI~PPS~e~L~~~~~r--l~-~~see~~~r~~~~a~~----~e~~~~~~  348 (468)
T 3shw_A          281 DKHALLDV---TPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTMRMR--LC-PESRKSARKLYERSHK----LRKNNHHL  348 (468)
T ss_dssp             TCEEEECC---CHHHHHHHHH-TTCCC-EEEEEECSCHHHHHHHHHH--HC-TTCCCCHHHHHHHHHH----HHHHHGGG
T ss_pred             CCeEEEEe---CHHHHHHHHh-cCCCC-EEEEEeCcCHHHHHHHHhc--cC-CCCHHHHHHHHHHHHH----HHHhhhcc
Confidence            89999994   3444444544 45556 6778777665444433444  11 1112233333333211    12223444


Q ss_pred             CcEEEEcCCCCh-HHHHHHHHHhcCc
Q 028388          178 GKVRKIDAAKPV-AEVFDAVKAVFTP  202 (209)
Q Consensus       178 ~~~~~id~~~~~-ee~~~~i~~~i~~  202 (209)
                      -+.+++|.  ++ ++.++++...|..
T Consensus       349 fD~vIvNd--dl~d~a~~~L~~ii~~  372 (468)
T 3shw_A          349 FTTTINLN--SMNDGWYGALKEAIQQ  372 (468)
T ss_dssp             CSEEEECB--TTBCHHHHHHHHHHHH
T ss_pred             CCEEEECC--CcHHHHHHHHHHHHHH
Confidence            45666665  35 4677777777644

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.66  E-value=3.3e-05  Score=62.72  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+.-++|.|+||+|||++|+.+++.++.+++.
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~  268 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            446679999999999999999999999866654

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.66  E-value=2.8e-05  Score=59.62  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .+..++|.|+||+||||+|+.+++.++.+++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3456899999999999999999999986654

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.65  E-value=3e-05  Score=56.35  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ....++.|.|++||||||+++.|+-.+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998743

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.65  E-value=2.9e-05  Score=53.75  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...-++|.|++|+||||+|..|.+ .|+.+++-
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaD   46 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID-RGHQLVCD   46 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEES
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecC
Confidence            346799999999999999999987 47776654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.65  E-value=4e-05  Score=63.15  Aligned_cols=31  Identities=26%  Similarity=0.516  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ++..++|.||||+||||+++.|+..++..++
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~  137 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV  137 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            4678999999999999999999999975543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.64  E-value=4e-05  Score=54.04  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +++++++|+|||||||++..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999997776655

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.63  E-value=6e-05  Score=61.27  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      |.-++|.||||+||||+++.|+..++.+++.
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4459999999999999999999998755543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.62  E-value=2.7e-05  Score=57.26  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+.+++|.|++|||||||.+.|+..+
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444577899999999999999999998655

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.61  E-value=2.1e-05  Score=57.27  Aligned_cols=30  Identities=33%  Similarity=0.326  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334567799999999999999999998655

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.61  E-value=4e-05  Score=55.24  Aligned_cols=34  Identities=21%  Similarity=0.096  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~   52 (209)
                      ..+.+++|.|+|||||||++..|+...+  ..+++.
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~   53 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT   53 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence            4567999999999999999999987433  334443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.61  E-value=4.6e-05  Score=55.34  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+++|.|+|||||||+++.|+..+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.60  E-value=0.00028  Score=55.62  Aligned_cols=150  Identities=9%  Similarity=0.082  Sum_probs=79.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +..++.|+|+||+|   +||++.|.+.+.-.+.+.   .+.. ..+...+.       +..+++    ...++..+.  .
T Consensus       229 ~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~p-R~gE~dG~-------~Y~Fv~----~~~V~~~~~--~  288 (391)
T 3tsz_A          229 AGFLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSEP-RDAGTDQR-------SSGIIR----LHTIKQIID--Q  288 (391)
T ss_dssp             CSSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCCC-CCSSSCCC---------CCCC----HHHHHHHHT--T
T ss_pred             CCCCCEEEEECCCH---HHHHHHHHhhCccccccc---cCCC-CCcccCCc-------cCCcCc----HHHHHHHHH--c
Confidence            35678899999998   899999988775434432   1111 01111110       011222    455666655  5


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCH-HHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE-EEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~-~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      ++.+|+|=   ...-...+.. ....| ++||+..|. +++.+| .+|  ... +..+.+.+++....+    +...|..
T Consensus       289 Gk~~iLdI---d~qg~~~l~~-~~~~p-~~IFI~PPS~~~L~~~-~~r--~~~-~s~e~~~~~~~~a~~----~e~~~~~  355 (391)
T 3tsz_A          289 DKHALLDV---TPNAVDRLNY-AQWYP-IVVFLNPDSKQGVKTM-RMR--LCP-ESRKSARKLYERSHK----LRKNNHH  355 (391)
T ss_dssp             TCEEEECC---CHHHHHHHHH-TTCCC-EEEEEECCCHHHHHHH-HHH--HCS-SCCCCHHHHHHHHHH----HHHHHGG
T ss_pred             CCEEEEEe---CHHHHHHHHh-CCCCC-EEEEEeCcCHHHHHHH-Hhc--CCC-CCHHHHHHHHHHHHH----HHHhccc
Confidence            89999994   3444444544 45556 677777765 555554 444  111 122233333333211    2222334


Q ss_pred             cCcEEEEcCCCChH-HHHHHHHHhcCc
Q 028388          177 KGKVRKIDAAKPVA-EVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~~~~e-e~~~~i~~~i~~  202 (209)
                      .-+.+++|.  +++ ..++++.+.|..
T Consensus       356 ~fd~vivNd--~l~~~a~~~l~~ii~~  380 (391)
T 3tsz_A          356 LFTTTINLN--SMNDGWYGALKEAIQQ  380 (391)
T ss_dssp             GCSEEEECC--TTCCHHHHHHHHHHHH
T ss_pred             cCcEEEECC--CcHHHHHHHHHHHHHH
Confidence            445666766  354 577777776654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.59  E-value=4.9e-05  Score=57.71  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++.+|+|.|++||||||++..|+..+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999999765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.59  E-value=7.4e-05  Score=59.96  Aligned_cols=38  Identities=21%  Similarity=0.319  Sum_probs=30.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh-----C--CceecHhHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF-----G--YTHLSAGDLLRA   58 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l-----~--~~~i~~~~~~~~   58 (209)
                      +..++|.|+||+||||+++.++..+     +  +.+++..++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~  174 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND  174 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence            5679999999999999999999877     4  355666665443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.57  E-value=3.3e-05  Score=57.65  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           26 SLQARAGDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445677899999999999999999998655

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.57  E-value=3.5e-05  Score=56.87  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=26.2

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3445677899999999999999999998655

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.57  E-value=4.8e-05  Score=54.31  Aligned_cols=23  Identities=26%  Similarity=0.611  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +++++|+|+||||||++|..+..
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999988643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.57  E-value=3.9e-05  Score=56.47  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.. -+++|.|++|||||||.+.|+-.+
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence            44456 789999999999999999998655

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.57  E-value=4.4e-05  Score=53.67  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=21.4

Q ss_pred             CCccccCcchhhcccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388            1 MGTVVETPVKEADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ||-.-++|...+..... .+...|+|.|.+|||||||.+.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A            1 MGHHHHHHGSLVPRGSR-SRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             -------------------CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccccccccccCCCCC-CceEEEEEECCCCCCHHHHHHHHHc
Confidence            56666666665555553 3457799999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.56  E-value=2.2e-05  Score=54.71  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .++.|.|++||||||+++.|...+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4799999999999999999998763

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.56  E-value=5.3e-05  Score=60.41  Aligned_cols=27  Identities=30%  Similarity=0.593  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+++|++||||||++..|+..+
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999999777

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.56  E-value=7.9e-05  Score=56.92  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC----C--ceecHhHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG----Y--THLSAGDLLRAE   59 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~----~--~~i~~~~~~~~~   59 (209)
                      +..++|.|+||+|||++++.++..+.    .  .+++..+++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            56799999999999999999998654    3  346666665544

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.56  E-value=5.3e-05  Score=58.65  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..++|.|+||+||||+++.+++.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4489999999999999999998864

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.56  E-value=7e-05  Score=57.94  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...++.++.|.|+|||||||+.+.|...+
T Consensus        50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            345678899999999999999999998765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.56  E-value=2.8e-05  Score=58.42  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.||+|||||||.+.|+-.+
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            344567899999999999999999998655

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.55  E-value=6.6e-05  Score=58.85  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++|.|+||+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999988

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.55  E-value=4.6e-05  Score=53.71  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ......|+|.|.+|+|||||.+.|..
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhc
Confidence            34455799999999999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.55  E-value=4.8e-05  Score=53.49  Aligned_cols=44  Identities=11%  Similarity=0.122  Sum_probs=23.7

Q ss_pred             CCccccCcchhhcccccC-CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388            1 MGTVVETPVKEADATVTV-KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ||.--+-|.+.+...-.. .....|+|.|.+|+|||||.+.|...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A            1 MGSSHHHHHHSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             -------------CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCccccccccccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence            566666666655544333 23467999999999999999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.55  E-value=3e-05  Score=57.32  Aligned_cols=30  Identities=30%  Similarity=0.506  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++.+++|.|++|||||||.+.|+-.+
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567899999999999999999998765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.55  E-value=5.7e-05  Score=60.28  Aligned_cols=26  Identities=42%  Similarity=0.728  Sum_probs=24.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|.+|+++|++||||||++..|+..+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            58999999999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.55  E-value=3.7e-05  Score=57.36  Aligned_cols=30  Identities=33%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            444567899999999999999999998655

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.54  E-value=3.3e-05  Score=59.48  Aligned_cols=29  Identities=14%  Similarity=0.250  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .-++|.|+||+|||++++.+++.++..++
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            45899999999999999999999986543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.54  E-value=3.8e-05  Score=57.57  Aligned_cols=30  Identities=30%  Similarity=0.382  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           40 FTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444567799999999999999999998765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.54  E-value=3.9e-05  Score=57.20  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3445677899999999999999999998654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.54  E-value=4.7e-05  Score=56.94  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44456789999999999999999999875

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.54  E-value=3.1e-05  Score=57.87  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            334567899999999999999999998655

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.54  E-value=1.4e-05  Score=53.90  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.-|+|.|+||+|||++|+.+++..+
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~   52 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT   52 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC
Confidence            34488999999999999999988776

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.53  E-value=4e-05  Score=56.97  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            444577899999999999999999998655

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.53  E-value=4.1e-05  Score=56.72  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=24.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           24 LVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44456789999999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.53  E-value=3.6e-05  Score=57.25  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.|++|||||||.+.|+-.+
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998655

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.53  E-value=8.2e-05  Score=57.11  Aligned_cols=29  Identities=21%  Similarity=0.441  Sum_probs=25.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...++.+|+|+|++|+||||++..|+..+
T Consensus       101 ~~~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          101 KENRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999999876

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.53  E-value=5.8e-05  Score=64.60  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLR   57 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~   57 (209)
                      +....|.-|++.||||+|||.+|+.++.+++.++++  ..+++.
T Consensus       506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s  549 (806)
T 3cf2_A          506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT  549 (806)
T ss_dssp             SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred             cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence            333456679999999999999999999999987765  344443

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.52  E-value=0.0012  Score=48.37  Aligned_cols=24  Identities=38%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+.+++|.|+||+||||+|..++-
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            567999999999999999988754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.52  E-value=7e-05  Score=60.58  Aligned_cols=27  Identities=19%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+|||++++.|++.+
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345567899999999999999999997

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.52  E-value=2.9e-05  Score=56.15  Aligned_cols=30  Identities=33%  Similarity=0.359  Sum_probs=25.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+.+++|.|++|||||||.+.|+-.+
T Consensus        30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            334567789999999999999999998655

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.52  E-value=3.5e-05  Score=56.34  Aligned_cols=30  Identities=20%  Similarity=0.393  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++.+++|.|++|||||||.+.|+-.+
T Consensus        29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           29 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.52  E-value=3.5e-05  Score=56.74  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998755

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.51  E-value=5.7e-05  Score=53.75  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=22.6

Q ss_pred             hhhcccccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           10 KEADATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        10 ~~~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ....+.+...+...|+|.|.+|+|||||.+.|...
T Consensus        13 ~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           13 NLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             ----------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            33445565566778999999999999999999753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.51  E-value=5.3e-05  Score=54.50  Aligned_cols=25  Identities=36%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+-+++|.|++|||||||.+.|+-.
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.49  E-value=4.9e-05  Score=56.85  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3445677899999999999999999998654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.49  E-value=8.1e-05  Score=56.42  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=24.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+.+++|.|+||||||||+..|+-.+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34567799999999999999999988765

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=6.6e-05  Score=54.95  Aligned_cols=26  Identities=15%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .++.++.|.|+|||||||++..|+..
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            35679999999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.47  E-value=4.3e-05  Score=56.53  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+-.+
T Consensus        21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344567799999999999999999998654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.47  E-value=8.6e-05  Score=58.24  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...+.+++|+|++||||||+.+.|+..+.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34567899999999999999999988663

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.47  E-value=6.2e-05  Score=52.89  Aligned_cols=30  Identities=17%  Similarity=0.281  Sum_probs=22.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.+..++..|++.|.+|||||||+..|...
T Consensus        15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccccceeEEEEECcCCCCHHHHHHHHHcC
Confidence            333445568999999999999999999754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.47  E-value=7.3e-05  Score=57.83  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+++.||||+||||+++.++..+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.46  E-value=9.6e-05  Score=57.47  Aligned_cols=26  Identities=27%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+|.|.|+||||||||.+.|...+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.46  E-value=6.8e-05  Score=52.34  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=21.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...+...|+|.|.+|+|||||.+.|..
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhc
Confidence            344567899999999999999999975

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.45  E-value=4.6e-05  Score=57.36  Aligned_cols=30  Identities=20%  Similarity=0.099  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-+++|.|++|||||||.+.|+-.+
T Consensus        42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           42 WQIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            334567799999999999999999998665

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.45  E-value=4.7e-05  Score=56.50  Aligned_cols=30  Identities=27%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-+++|.|++|||||||.+.|+..+
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344567799999999999999999998654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.45  E-value=0.00011  Score=53.28  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..+++++|+||+||||++..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999888877

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.45  E-value=8.6e-05  Score=57.84  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...-+++|+||+||||||+.+.|...+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            344599999999999999999998766

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.44  E-value=9.6e-05  Score=57.66  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +..++|.|+||+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            567899999999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.44  E-value=0.00011  Score=57.35  Aligned_cols=28  Identities=29%  Similarity=0.356  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++.+|+|+|+||+||||++..|+..+
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999999876

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.44  E-value=7.4e-05  Score=58.10  Aligned_cols=30  Identities=20%  Similarity=0.435  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           25 LSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            444567899999999999999999998654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.43  E-value=0.00012  Score=52.73  Aligned_cols=27  Identities=26%  Similarity=0.389  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.+.|+|.|.+||||||++..|...+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.42  E-value=0.00011  Score=53.91  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+++|.|+|||||||++..++...
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999988876543

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.42  E-value=0.00012  Score=54.38  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++...|+|.||||+|||+++..|+..++
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~~  129 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3345799999999999999999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.42  E-value=0.0001  Score=55.27  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.++|.|++|||||||.+.|+...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999766

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.42  E-value=9e-05  Score=57.48  Aligned_cols=22  Identities=32%  Similarity=0.758  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 028388           24 VFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|.||+|+||||+++.|+..+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999965

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.40  E-value=9.1e-05  Score=51.25  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .....|+|.|.+|||||||.+.|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999999754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.39  E-value=0.0001  Score=58.89  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..|.+|+|+|++||||||++..|+..+
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999876

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.39  E-value=9.1e-05  Score=57.70  Aligned_cols=30  Identities=23%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.|++|||||||.+.|+-.+
T Consensus        49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            445677899999999999999999998654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.39  E-value=9.2e-05  Score=57.66  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=25.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3444567899999999999999999998654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.39  E-value=9.2e-05  Score=58.02  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence            444567899999999999999999998655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.39  E-value=8.8e-05  Score=58.01  Aligned_cols=28  Identities=32%  Similarity=0.500  Sum_probs=25.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      ...++|.|++|||||||++.|+..++..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5689999999999999999999988653

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.38  E-value=0.00014  Score=55.63  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .++..++|.|+||+||||+++.+++.++
T Consensus        44 ~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           44 GSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             TCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            3444599999999999999999999864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.37  E-value=8.1e-05  Score=56.32  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-.++.+++|.|++|||||||.+.|+-.+
T Consensus        60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34567799999999999999999998665

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.37  E-value=0.00013  Score=55.46  Aligned_cols=27  Identities=22%  Similarity=0.450  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+...++|.|+||+||||+++.+++.+
T Consensus        36 ~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           36 KNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            343349999999999999999999986

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.37  E-value=0.0001  Score=57.49  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            3444567899999999999999999998654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.37  E-value=0.00013  Score=51.70  Aligned_cols=32  Identities=13%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             hcccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        12 ~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....+...+...|+|.|.+|+|||||.+.|..
T Consensus        19 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           19 SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             ---------CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ccCCcCcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            34455556678899999999999999999875

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.36  E-value=9.2e-05  Score=56.81  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+..+++|+|+.||||||+.+.|...
T Consensus         2 ~~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            2 NPIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CcccEEEEEecCCCCHHHHHHHHHhh
Confidence            34568999999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.36  E-value=0.00012  Score=55.09  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +..+++|.|+||||||||+..++..+
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999988543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.35  E-value=0.0001  Score=54.81  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +..++|.|+||+|||++|+.+++..+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            45688999999999999999998764

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.35  E-value=0.00016  Score=57.53  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...-+++|+||+||||||+.+.|...++
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3456899999999999999999998874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.35  E-value=0.00015  Score=55.94  Aligned_cols=33  Identities=12%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGD   54 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~   54 (209)
                      .+++|.|++|+||||+++.+++..++.+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            689999999999999999999988877776543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.35  E-value=0.00011  Score=57.56  Aligned_cols=30  Identities=30%  Similarity=0.376  Sum_probs=25.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||+|||||||.+.|+-.+
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            444567899999999999999999998654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.35  E-value=6.8e-05  Score=58.01  Aligned_cols=24  Identities=29%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      -++|.|+||+|||++|+.+++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            399999999999999999999886

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.35  E-value=0.00017  Score=50.73  Aligned_cols=30  Identities=10%  Similarity=0.153  Sum_probs=24.6

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...+...|+|.|.+|||||||.+.|...
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            344456788999999999999999999753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.35  E-value=8.5e-05  Score=55.41  Aligned_cols=30  Identities=33%  Similarity=0.411  Sum_probs=25.0

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-. +-+++|.|++|||||||.+.|+-.+
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            34456 7899999999999999999998643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.34  E-value=8.7e-05  Score=57.99  Aligned_cols=28  Identities=29%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ....+++|+|++||||||+++.|...+.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4567899999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.34  E-value=0.00017  Score=52.12  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+++.|+|.|.+|||||||+..|...+
T Consensus        35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           35 KHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3457889999999999999999998875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.34  E-value=9.3e-05  Score=57.51  Aligned_cols=30  Identities=30%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||+|||||||.+.|+-.+
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            344567799999999999999999998654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.33  E-value=0.00015  Score=62.08  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh----------CCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF----------GYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l----------~~~~i~~   52 (209)
                      ..+..++|.|+||+||||+|+.|++.+          +..++..
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~  242 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL  242 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence            445578999999999999999999997          6666655

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.33  E-value=5.6e-05  Score=57.60  Aligned_cols=29  Identities=24%  Similarity=0.375  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+.++.|.|++|||||||.+.|+..+
T Consensus        76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           76 TVMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            34567799999999999999999998755

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.33  E-value=0.00038  Score=53.05  Aligned_cols=29  Identities=10%  Similarity=0.031  Sum_probs=24.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...+++.+++.||||+||||+++.|++.
T Consensus        13 i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A           13 IEKSEGISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             HHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            34445678999999999999999999985

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.32  E-value=0.0002  Score=49.16  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.++..|+|.|.+|+|||||.+.|..
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            34567899999999999999999964

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.32  E-value=0.0002  Score=55.51  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=25.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...++.+|+|.|+||+||||++..|+..+
T Consensus        52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34677899999999999999999998765

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.32  E-value=0.00014  Score=55.60  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~   52 (209)
                      +.+++|.|+||+||||||..++...|  ..+++.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            45689999999999999999987643  345555

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00017  Score=50.92  Aligned_cols=31  Identities=13%  Similarity=0.306  Sum_probs=22.3

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .++...+...|+|.|.+|+|||||.+.|...
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3444456678999999999999999999763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.31  E-value=0.00021  Score=50.48  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..++..|+|.|.+|+|||||.+.|...
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            345678999999999999999999864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.30  E-value=0.00015  Score=56.37  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.++.|.|+||||||||+..|+-..
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            466799999999999999999999776

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.29  E-value=0.00011  Score=57.48  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||+|||||||.+.|+-.+
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            344567799999999999999999998654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.29  E-value=0.00019  Score=55.82  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.++.|.|+||||||||+..++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.29  E-value=0.00019  Score=49.81  Aligned_cols=29  Identities=10%  Similarity=0.143  Sum_probs=22.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      |...+...|+|.|.+|+|||||.+.+...
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            44456678999999999999999998753

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.29  E-value=0.00015  Score=55.31  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++..++|.|+||+||||+++.+++.+
T Consensus        40 ~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           40 GNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            343349999999999999999999986

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.28  E-value=0.00015  Score=51.21  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...|+|.|++|||||||.+.|....
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.28  E-value=8.4e-05  Score=57.65  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-++.|.||+||||||+.+.|+-.+
T Consensus        20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            3444567899999999999999999998654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.28  E-value=0.00016  Score=49.72  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|++|+|||||.+.|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999975

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.28  E-value=0.00019  Score=58.36  Aligned_cols=27  Identities=33%  Similarity=0.629  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+|+|+|||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999766

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.28  E-value=0.0002  Score=61.41  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=27.0

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      +|. .++|.|+||+|||++|+.|++.++..++.
T Consensus       486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~  518 (758)
T 1r6b_X          486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCceEEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence            444 69999999999999999999999865543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.27  E-value=0.00015  Score=57.17  Aligned_cols=29  Identities=28%  Similarity=0.355  Sum_probs=24.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.-..+-++.|.||+||||||+.+.|+-.
T Consensus        42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           42 FSISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            34456789999999999999999999854

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.27  E-value=0.00024  Score=52.67  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++.++++.|.+||||||++..|+..+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l   38 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYL   38 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4467899999999999999999999765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.27  E-value=0.0001  Score=52.63  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=24.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...++..|+|.|++|||||||.+.|..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            5566778999999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.27  E-value=0.00021  Score=50.11  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=21.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+...|+|.|.+|||||||.+.+..
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence            34456799999999999999988765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=51.04  Aligned_cols=29  Identities=28%  Similarity=0.195  Sum_probs=22.1

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+...|+|.|.+|+|||||.+.|....
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCC
Confidence            34456789999999999999999987543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.0002  Score=50.03  Aligned_cols=25  Identities=24%  Similarity=0.415  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ++..|+|.|++|+|||||.+.|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999763

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.24  E-value=0.00032  Score=49.66  Aligned_cols=27  Identities=19%  Similarity=0.156  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.++++++|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            456899999999999999999998887

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.24  E-value=0.00022  Score=49.29  Aligned_cols=25  Identities=32%  Similarity=0.472  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .++..|+|.|.+|||||||.+.|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999965

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.24  E-value=0.0002  Score=50.01  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.+.+|+|+.||||||+...|.--++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34899999999999999999976554

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.23  E-value=0.00015  Score=50.49  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.+|+|||||.+.|..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHc
Confidence            3456799999999999999999874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.23  E-value=0.0002  Score=48.90  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|||||||.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3467999999999999999999753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.23  E-value=0.00017  Score=49.97  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|.+|+|||||.+.+...
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999999763

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.00026  Score=49.78  Aligned_cols=26  Identities=15%  Similarity=0.234  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|++|||||||...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45668999999999999999999764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.23  E-value=0.0002  Score=51.24  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .....|+|.|.+|+|||||.+.|...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34567999999999999999999763

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.22  E-value=0.00027  Score=53.64  Aligned_cols=25  Identities=28%  Similarity=0.624  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.+|++.|++|+||||++..|+..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999777

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.22  E-value=0.00023  Score=50.50  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..|+|.|++|||||||.+.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            56999999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.21  E-value=0.00024  Score=49.21  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+..|+|.|.||+|||||.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.21  E-value=0.00019  Score=57.08  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=23.2

Q ss_pred             ccCCCCeE--EEEEcCCCCChhHHHHHHHHH
Q 028388           16 VTVKKPTV--VFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        16 ~~~~~~~~--i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +....+.+  ++|.|++|||||||.+.|+..
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34445666  999999999999999999754

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.21  E-value=0.00028  Score=53.55  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+|+++|++|+||||++..|+..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999776

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.20  E-value=0.00023  Score=48.50  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +..|+|.|.+|||||||.+.|...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            457999999999999999998753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.20  E-value=8.9e-05  Score=57.68  Aligned_cols=31  Identities=23%  Similarity=0.236  Sum_probs=25.9

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-..+-++.|.||+|||||||.+.|+-.+
T Consensus        25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           25 NINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3445567899999999999999999998654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.20  E-value=0.00027  Score=48.93  Aligned_cols=26  Identities=23%  Similarity=0.487  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|.+|||||||.+.|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999999764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.20  E-value=0.00013  Score=56.32  Aligned_cols=27  Identities=41%  Similarity=0.495  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...+++|.|++||||||+.+.|+..+.
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            456899999999999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00015  Score=58.39  Aligned_cols=29  Identities=17%  Similarity=0.269  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+.+++|.|++|||||||++.|+..+
T Consensus       134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34467899999999999999999998755

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.19  E-value=0.00033  Score=55.95  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.+|+++|++||||||++..|+..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999999766

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.18  E-value=0.0003  Score=50.52  Aligned_cols=27  Identities=15%  Similarity=0.191  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+...|+|.|++|||||||...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            355689999999999999999998654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.18  E-value=0.00022  Score=50.04  Aligned_cols=25  Identities=28%  Similarity=0.205  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.+|+|||||.+.|..
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHc
Confidence            4456799999999999999999975

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.17  E-value=0.00025  Score=49.13  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|||||||.+.|...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999998753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.17  E-value=0.00031  Score=54.20  Aligned_cols=28  Identities=11%  Similarity=0.152  Sum_probs=25.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      |..+++.|+||+||||+|+.+++.++..
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            5679999999999999999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.17  E-value=0.00029  Score=47.81  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.|++.|.+|+||||+.+.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.17  E-value=0.00033  Score=49.16  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ......|+|.|.+|||||||.+.|...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            344567999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.17  E-value=0.00026  Score=48.11  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..|++.|.+|||||||.+.|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999999754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.15  E-value=0.0003  Score=54.63  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~   52 (209)
                      ++.++.|.|+||||||||+..++...     ...+++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~   97 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA   97 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            56799999999999999999988654     2455665

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.15  E-value=0.00018  Score=58.75  Aligned_cols=28  Identities=25%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..+..++|+|++||||||+.+.|...+.
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3566799999999999999999987663

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.14  E-value=0.00015  Score=59.04  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .-++|.|+||+|||++|+.|+..++
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4689999999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.14  E-value=0.00032  Score=48.50  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...|+|.|.+|||||||.+.|..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHh
Confidence            346799999999999999999975

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.13  E-value=0.00028  Score=48.37  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|++.|.+|+|||||.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.13  E-value=0.0003  Score=47.91  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +..|++.|.+|||||||.+.|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.13  E-value=0.00043  Score=48.81  Aligned_cols=30  Identities=20%  Similarity=0.206  Sum_probs=24.3

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+...+...|+|.|.+|+|||||.+.|..
T Consensus        22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           22 SRIFGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             GGTTTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             HHhccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            334445677899999999999999999853

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.12  E-value=0.00031  Score=48.38  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..|+|.|.+|+|||||.+.|..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            45799999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.12  E-value=0.00031  Score=49.33  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|.+|+|||||.+.|...
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhC
Confidence            34567999999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.11  E-value=0.00039  Score=48.89  Aligned_cols=24  Identities=21%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...|+|.|.+|+|||||.+.|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhc
Confidence            346799999999999999999876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.11  E-value=0.0003  Score=55.65  Aligned_cols=23  Identities=17%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      +..++.|.|+||||||||+..|+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            46699999999999999999876

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.10  E-value=0.00027  Score=49.31  Aligned_cols=25  Identities=20%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ++..|+|.|.+|||||||.+.|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.10  E-value=0.00031  Score=54.59  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.+++|.|++|||||||.+.|...+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            35689999999999999999997544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.10  E-value=0.00034  Score=47.73  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..|+|.|.+|||||||.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35699999999999999999975

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.10  E-value=0.00025  Score=61.59  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+||||+++.|++.+
T Consensus       189 ~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          189 RTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            345568999999999999999999987

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.09  E-value=0.00028  Score=50.12  Aligned_cols=43  Identities=19%  Similarity=0.271  Sum_probs=21.7

Q ss_pred             CCccccCcchhhccc----ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388            1 MGTVVETPVKEADAT----VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus         1 ~~~~~~~~~~~~~~~----~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ||.--++|.+.+...    ....+...|+|.|.+|+|||||.+.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A            1 MGSSHHHHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             ---------------------CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             CCccccccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence            444445554443322    1223456799999999999999999864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.08  E-value=0.00034  Score=55.46  Aligned_cols=26  Identities=27%  Similarity=0.175  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.++.|.|++||||||+.+.|...+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            44589999999999999999998743

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.08  E-value=0.00038  Score=48.59  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.+|||||||.+.|..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            5667899999999999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.08  E-value=0.0004  Score=48.45  Aligned_cols=26  Identities=19%  Similarity=0.326  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|.+|+|||||.+.|...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.08  E-value=0.00038  Score=53.95  Aligned_cols=26  Identities=12%  Similarity=0.140  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..+.++.|.|+|||||||++..++..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35679999999999999999999875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.07  E-value=0.00041  Score=59.47  Aligned_cols=26  Identities=27%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|. .++|.||||+|||++|+.|++.+
T Consensus       519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          519 RPIGSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            444 69999999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.06  E-value=0.00033  Score=51.29  Aligned_cols=25  Identities=20%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+..|+|.|.+|+|||||.+.|..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcC
Confidence            4456899999999999999999874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.06  E-value=0.00034  Score=48.64  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .++..|+|.|++|||||||...|.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            567889999999999999999986

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.06  E-value=0.00038  Score=52.95  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...+++|.|++|||||||.+.|. .+.
T Consensus       164 ~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          164 EGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            35689999999999999999998 543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.05  E-value=0.00033  Score=49.36  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=21.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....+..|+|.|.+|+|||||.+.|..
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            344566899999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.05  E-value=0.00044  Score=46.92  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.+.+|.|+.||||||+...|.=
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999999864

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.05  E-value=0.00032  Score=55.35  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=23.2

Q ss_pred             CCeEEEE--EcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFV--LGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i--~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..++|  .|+||+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            5677888  9999999999999999876

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.05  E-value=0.00045  Score=54.99  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|.+|+|.|++||||||++..|+..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999877

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.05  E-value=0.00041  Score=49.77  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....|+|.|.+|+|||||.+.|..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhc
Confidence            345799999999999999999875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.05  E-value=0.0005  Score=53.00  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=25.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CceecH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSA   52 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~   52 (209)
                      .+++|.|++|+||||+++.+++..+  ..+++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            4899999999999999999998875  344443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.04  E-value=0.00046  Score=53.74  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~   52 (209)
                      ++.++.|.|+|||||||+|..++...     ...+++.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            56799999999999999999988654     3556665

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.04  E-value=0.0004  Score=47.49  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..|+|.|.+|+|||||.+.|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35699999999999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.03  E-value=0.00028  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|++|+|||||.+.|..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999975

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.03  E-value=0.00039  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..|+|.|.+|+|||||.+.|..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            46799999999999999999975

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.03  E-value=0.00032  Score=49.34  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ....|+|.|.+|+|||||.+.|...-
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence            34579999999999999999998644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.02  E-value=0.00038  Score=47.68  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|.+|+|||||.+.|...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.02  E-value=0.00032  Score=48.42  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999974

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.02  E-value=0.00044  Score=48.66  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=20.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ++..|++.|.+|+|||||.+.|..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            455799999999999999999986

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.02  E-value=0.00054  Score=52.43  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.+++|.|.||+||||++..++...
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.01  E-value=0.00051  Score=52.34  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...-++|.|++|+||||++..|.++ |+.+++-
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d  174 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD  174 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence            3567999999999999999999875 7766654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.00  E-value=0.00048  Score=47.00  Aligned_cols=21  Identities=33%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~   42 (209)
                      ..|+|.|.+|+|||||.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            468999999999999999985

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.00  E-value=0.00043  Score=53.19  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.++.|.|+|||||||++..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            46799999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.00  E-value=0.00055  Score=48.88  Aligned_cols=28  Identities=18%  Similarity=0.154  Sum_probs=23.0

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      |...+...|+|.|.+|+|||||.+.|..
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhc
Confidence            3344556799999999999999999875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.00  E-value=0.00044  Score=48.15  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|||||||.+.|...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3467999999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.00  E-value=0.00044  Score=49.06  Aligned_cols=23  Identities=13%  Similarity=0.195  Sum_probs=20.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45799999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.99  E-value=0.00038  Score=47.55  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..|++.|.+|||||||.+.|...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.99  E-value=0.00037  Score=52.99  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.||+|||||.+.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            3456899999999999999999974

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.99  E-value=0.00048  Score=51.47  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|+||||||||.+.|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.99  E-value=0.00038  Score=48.16  Aligned_cols=24  Identities=17%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....|+|.|.+|||||||.+.|..
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999999864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.99  E-value=0.00038  Score=47.58  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|.+|+|||||.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            356999999999999999999754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.99  E-value=0.00048  Score=47.86  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|||||||.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3457999999999999999999753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.98  E-value=0.00048  Score=48.09  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ....|+|.|.+|+|||||.+.|...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999999763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.98  E-value=0.00065  Score=47.82  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .....|+|.|.+|||||||.+.|..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3456799999999999999999975

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.98  E-value=0.00053  Score=48.48  Aligned_cols=26  Identities=12%  Similarity=0.175  Sum_probs=20.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+...|+|.|.+|+|||||.+.|..
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34567899999999999999999874

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=96.97  E-value=0.0005  Score=52.34  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..|+|.|+||+|||++|+.+.+..
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            34568899999999999999999865

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.96  E-value=0.00054  Score=58.71  Aligned_cols=27  Identities=15%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..++|.|+||+||||+++.|++.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            456678999999999999999999987

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.96  E-value=0.00055  Score=46.82  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|||||||.+.|..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999863

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.96  E-value=0.00039  Score=58.04  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...++|.|+||+||||+++.|+..++
T Consensus        60 g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           60 KRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            35789999999999999999999875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.95  E-value=0.00054  Score=52.55  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+.++.|.|+|||||||+|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999999999864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.95  E-value=0.00046  Score=59.91  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +|. .++|.|+||+|||++|+.|++.+
T Consensus       586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          586 RPIGSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            443 79999999999999999999988

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.95  E-value=0.00037  Score=49.25  Aligned_cols=29  Identities=14%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+...|+|.|.+|+|||||.+.+...+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            34456689999999999999999876643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.95  E-value=0.00044  Score=47.22  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45699999999999999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.95  E-value=0.00064  Score=47.51  Aligned_cols=26  Identities=19%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+...|+|.|.+|||||||.+.|..
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhc
Confidence            35667899999999999999999974

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.95  E-value=0.00053  Score=48.68  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ....|+|.|.+|+|||||.+.|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.95  E-value=0.0006  Score=48.30  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|||||||.+.|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.94  E-value=0.00066  Score=47.16  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|.+|+|||||.+.|...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.94  E-value=0.00047  Score=47.56  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|||||||.+.|..
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.94  E-value=0.00049  Score=47.66  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..|+|.|.+|+|||||.+.|..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            45799999999999999999875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.93  E-value=0.00038  Score=48.87  Aligned_cols=26  Identities=23%  Similarity=0.093  Sum_probs=22.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ...|+|.|.+|+|||||.+.|...+.
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            45799999999999999998876554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.93  E-value=0.00067  Score=48.74  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ......|+|.|.+|+|||||.+.|...
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcC
Confidence            344567999999999999999998753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.92  E-value=0.0006  Score=48.75  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...|+|.|.+|+|||||...|...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34567999999999999999999753

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.92  E-value=0.00064  Score=52.73  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=26.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.-.++.++.|.|++||||||+.+.|+....
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445778999999999999999999998875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.92  E-value=0.00096  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..|++.|+||+||||++-.++..+
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999998888766

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.91  E-value=0.00057  Score=48.01  Aligned_cols=25  Identities=16%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+..|+|.|.+|+|||||.+.|...
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457999999999999999999753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.91  E-value=0.00054  Score=48.80  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|+|||||.+.|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3457999999999999999998753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.91  E-value=0.00052  Score=48.92  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....|+|.|.+|||||||...|..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhc
Confidence            346799999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.91  E-value=0.00049  Score=57.16  Aligned_cols=28  Identities=25%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      -..+.++.|.|++||||||+.+.|+..+
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3466789999999999999999998766

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.90  E-value=0.00053  Score=48.68  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....|+|.|.+|+|||||.+.|..
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhh
Confidence            345799999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.90  E-value=0.00055  Score=47.33  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ++..|+|.|.+|+|||||.+.|..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            346799999999999999999875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.90  E-value=0.00056  Score=48.49  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .++..|++.|++|+|||||.+.|..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.89  E-value=0.00071  Score=54.15  Aligned_cols=31  Identities=19%  Similarity=0.238  Sum_probs=26.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.-.++.++.|.|++|||||||.+.|+....
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3445778999999999999999999998774

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.89  E-value=0.0007  Score=56.10  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+++|.|+||+||||++..|...+
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.89  E-value=0.00071  Score=50.12  Aligned_cols=26  Identities=19%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .++..|+|.|.+||||||+...|...
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCC
Confidence            34578999999999999999999743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.89  E-value=0.00059  Score=51.89  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+++|.|++|||||||.+.|+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccc
Confidence            4689999999999999999996543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.88  E-value=0.00044  Score=57.44  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+.++.|.|++||||||+.+.|+..+
T Consensus       365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          365 KIPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            33566789999999999999999998766

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.87  E-value=0.00081  Score=54.12  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=22.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+++|.|+||+||||++..++...
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            56699999999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.87  E-value=0.00062  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.87  E-value=0.00061  Score=55.05  Aligned_cols=28  Identities=32%  Similarity=0.495  Sum_probs=24.0

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-.. -++.|.|++||||||+.+.|+-.+
T Consensus        26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            3344 789999999999999999998766

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.87  E-value=0.00078  Score=47.94  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.+|+|||||.+.+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            4567899999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00058  Score=48.02  Aligned_cols=25  Identities=28%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|+|||||.+.|...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcC
Confidence            3457999999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.86  E-value=0.00061  Score=56.00  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++-++.|.|++||||||+.+.|+-.+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            56799999999999999999998654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.86  E-value=0.0008  Score=53.00  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+..+.|.|+|||||||+.+.|..
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4567899999999999999999987

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00048  Score=48.42  Aligned_cols=25  Identities=16%  Similarity=0.114  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|+|||||.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.86  E-value=0.00074  Score=45.91  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .|++.|.+|+|||||.+.|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.86  E-value=0.00061  Score=47.92  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...|+|.|.+|+|||||.+.|...
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcC
Confidence            4567999999999999999998764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.84  E-value=0.00051  Score=57.27  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=25.0

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-.++.++.|.|++||||||+.+.|+..+
T Consensus       377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            34567799999999999999999998765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.84  E-value=0.0014  Score=47.08  Aligned_cols=28  Identities=18%  Similarity=0.110  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.++.+++|++||||||.+-.++.++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            3457899999999999999999988877

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.83  E-value=0.00073  Score=55.57  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+-++.|.|++|||||||.+.|+-.+
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            466799999999999999999998654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.83  E-value=0.00074  Score=48.44  Aligned_cols=24  Identities=21%  Similarity=0.394  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...|+|.|.+|+|||||.+.|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            456799999999999999999874

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.82  E-value=0.00079  Score=54.25  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++|.|+|||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999877

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.82  E-value=0.00073  Score=47.14  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..|+|.|.+|+|||||.+.|...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            35899999999999999998753

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.80  E-value=0.00089  Score=48.51  Aligned_cols=25  Identities=16%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.+|+|||||...|..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3567899999999999999999864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.80  E-value=0.00059  Score=48.28  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      ...|+|.|.+|||||||.+.|.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999985

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.80  E-value=0.00098  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .....|+|.|.+|+|||||...|..
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.78  E-value=0.00025  Score=53.99  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +..+++|.|+||||||||.+.|...
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccc
Confidence            4679999999999999999999643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.78  E-value=0.00092  Score=52.15  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+...|+|.|.+||||||+++.+.=.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~   57 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIH   57 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence            457789999999999999999985433

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.77  E-value=0.00093  Score=50.04  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|.||+|||||.+.|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999853

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.77  E-value=0.00084  Score=47.69  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999875

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.77  E-value=0.001  Score=51.93  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh-----CCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~   53 (209)
                      ++.++.|.|+||+||||+|..++...     ...+++.+
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E  111 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE  111 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence            46689999999999999999988754     35566653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.77  E-value=0.00081  Score=55.15  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANI   41 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L   41 (209)
                      .++.+++|.|++|||||||++.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            45779999999999999999994

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.77  E-value=0.0007  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|++.|.||||||||.+.|..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999999975

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.76  E-value=0.00073  Score=51.55  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .++.+-.|+|+|.||+|||||.+.|..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            344556899999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.76  E-value=0.00052  Score=49.38  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=23.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .......|+|.|.+|||||||...|...
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3445678999999999999999998764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.76  E-value=0.00096  Score=50.88  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.|.|+||||||||+..++...
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999988876543

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.76  E-value=0.00092  Score=50.84  Aligned_cols=32  Identities=16%  Similarity=0.209  Sum_probs=25.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...-++|.|++|+||||+|..|.+ .|+.+++-
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~D  177 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGD  177 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence            356799999999999999999865 56666654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.75  E-value=0.0008  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -..-|+|.|++|+|||||.+.|..
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhC
Confidence            345689999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.00077  Score=47.24  Aligned_cols=24  Identities=17%  Similarity=0.441  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...|+|.|.+|+|||||.+.|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            467999999999999999999753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.73  E-value=0.001  Score=54.79  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+.+|.|.|++|+||||||+.+++
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999999995

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.00098  Score=55.55  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+-++.|.|++||||||+.+.|+-.+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            457799999999999999999998655

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.72  E-value=0.0011  Score=47.34  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.+.+|.|+.||||||+...|.=-++
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999865443

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.71  E-value=0.00079  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .+...|+|.|.+|+|||||.+.|.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999984

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.71  E-value=0.00041  Score=57.60  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=24.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-.++.++.|.||+||||||+.+.|...+
T Consensus       363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          363 SIEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34567799999999999999999998765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.70  E-value=0.0011  Score=55.08  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+.+|+|.|++|+||||+|..++.
T Consensus       145 ~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          145 GEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Confidence            3567999999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.70  E-value=0.001  Score=47.11  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.68  E-value=0.00082  Score=55.26  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++-++.|.|+.|||||||.+.|+-.+
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            56789999999999999999998654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.68  E-value=0.0012  Score=54.12  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..+++|.|+||||||||++.++...
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356689999999999999999998654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.68  E-value=0.0014  Score=52.62  Aligned_cols=26  Identities=15%  Similarity=0.248  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.+++|.|+||+||||++..++...
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999988654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.68  E-value=0.0015  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..-+++|.|.||+|||||+..++...
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45699999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.67  E-value=0.00089  Score=55.03  Aligned_cols=27  Identities=30%  Similarity=0.399  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++-++.|.|++|||||||++.|+-.+
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            356789999999999999999998654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.67  E-value=0.00084  Score=55.96  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+-++.|.|+.|||||||.+.|+-.+
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            356789999999999999999998654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.66  E-value=0.0011  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.|++.|.||||||||.+.|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35899999999999999999754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.64  E-value=0.0015  Score=46.03  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ..|+|.|.||+|||||.+.+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            56999999999999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.63  E-value=0.001  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.|..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999999864

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=96.63  E-value=0.075  Score=41.49  Aligned_cols=37  Identities=24%  Similarity=0.207  Sum_probs=26.9

Q ss_pred             cCCCCeEEEEEc-CCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           17 TVKKPTVVFVLG-GPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        17 ~~~~~~~i~i~G-~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      ...++++|.|.| ..|+||||++..||..+   |  ..+++.|
T Consensus       139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             CTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             cCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            345677777765 88999999999998766   3  4556643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.63  E-value=0.0014  Score=47.11  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=21.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHH-HHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCAN-IVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~-L~~~l   45 (209)
                      ....|+|.|.+|||||||.+. +...+
T Consensus        14 ~~~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           14 VQFKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             CEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345799999999999999999 55554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.62  E-value=0.0006  Score=56.71  Aligned_cols=29  Identities=41%  Similarity=0.472  Sum_probs=24.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-..+.++.|.|++||||||+.+.|+..+
T Consensus       365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            33567799999999999999999998766

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=96.62  E-value=0.028  Score=43.08  Aligned_cols=160  Identities=13%  Similarity=0.160  Sum_probs=78.1

Q ss_pred             EEEEcCCCCChhH-------HHHHHHHHhCCceecH---hHHH---HHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH
Q 028388           24 VFVLGGPGSGKGT-------QCANIVEHFGYTHLSA---GDLL---RAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ   90 (209)
Q Consensus        24 i~i~G~pgsGKsT-------la~~L~~~l~~~~i~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   90 (209)
                      |+|.||.+.|=-+       |...|.++++..+.-+   .++.   +..... ......+......+   ....+..-++
T Consensus       145 vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~~-~~~~~~~e~~~~~~---~~~ev~seVe  220 (337)
T 4dey_A          145 VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNN-PSKHAIIERSNTRS---SLAEVQSEIE  220 (337)
T ss_dssp             EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CC---CHHHHHHHHH
T ss_pred             eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhhc-ccchhhhccccccc---chHHHHhHHH
Confidence            8999999999764       6666777776542211   0100   000000 00011111111111   2233445566


Q ss_pred             HHHHhc-CCCeEEEeCCCC-CHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhc
Q 028388           91 KAMEES-GNDKFLIDGFPR-NEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (209)
Q Consensus        91 ~~~~~~-~~~~~i~dg~~~-~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (209)
                      ...... .++.+|+|--+. ...+.   .. ....+ ++||+.. +.+++.+|+..|  +.      ...+++....+..
T Consensus       221 ~i~~v~~~Gk~vILDIDvQnGa~ql---k~-~~~~~-i~IFI~PPS~eeLe~RL~~R--Gt------~~~~rl~~al~~a  287 (337)
T 4dey_A          221 RIFELARTLQLVVLDADTINHPAQL---SK-TSLAP-IVVYVKISSPKVLQRLIKSR--GK------SQAKHLNVQMVAA  287 (337)
T ss_dssp             HHHHHTTTCCEEEEEETTCCSGGGT---TT-SSCCC-EEEEECCSCHHHHHHHHHTT--CH------HHHTTHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEEeCcHHHHHHH---Hh-cCCCC-EEEEEECcCHHHHHHHHHhC--Cc------hHHHHHHHHHHHH
Confidence            655543 489999995443 33332   22 33445 4555555 578899999877  32      2223333221111


Q ss_pred             hhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       168 ~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ...+..+...-+++++|.  ++++.++++...|..
T Consensus       288 e~E~~~~~~~FDyvIVND--dLe~A~~~L~~iI~~  320 (337)
T 4dey_A          288 DKLAQCPPELFDVILDEN--QLEDACEHLADYLEA  320 (337)
T ss_dssp             HHHHHSCGGGCSEEECCS--SHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcccCCEEEECC--CHHHHHHHHHHHHHH
Confidence            111222233345666665  688888888887755

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.62  E-value=0.0011  Score=55.38  Aligned_cols=27  Identities=30%  Similarity=0.412  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+-++.|.|++|||||||.+.|+-.+
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            466799999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	1e-40
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	2e-40
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-40
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	1e-39
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	3e-38
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	3e-37
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	2e-36
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-36
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	2e-34
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	7e-34
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	3e-33
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	4e-30
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-15
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	6e-13
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	9e-13
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	1e-11
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	2e-11
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	4e-11
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	6e-11
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	1e-10
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	5e-09
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	3e-07
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	5e-06
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	1e-05
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	2e-05
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	3e-05
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	9e-05
d4tmka_	210	c.37.1.1 (A:) Thymidylate kinase {Escherichia coli	1e-04
d1nn5a_	209	c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapi	1e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	4e-04
d1uf9a_	191	c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermo	0.001
d2vp4a1	197	c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr	0.001
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.002
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	0.003

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  135 bits (339), Expect = 1e-40
 Identities = 101/186 (54%), Positives = 131/186 (70%), Gaps = 4/186 (2%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            KP VVFVLGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+
Sbjct: 4   SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGE 63

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEE 136
           IVPS VT+KLL+ A++ +    FL+DGFPRNEEN  ++E      ++ +FVLFFDC EE 
Sbjct: 64  IVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEV 123

Query: 137 MERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFD 194
           M +R+L R    GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A + V EV++
Sbjct: 124 MTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 183

Query: 195 AVKAVF 200
            V+ +F
Sbjct: 184 DVENLF 189

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 2e-40
 Identities = 99/190 (52%), Positives = 129/190 (67%), Gaps = 10/190 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGT-MIQNMIKEGKI 79
           P VVFVLGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+       +I+  IKEGKI
Sbjct: 1   PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKI 60

Query: 80  VPSEVTIKLLQKAMEES-----GNDKFLIDGFPRNEENRAAFEA--VTKIEPEFVLFFDC 132
           VP E+TI LL++ M+++       +KFLIDGFPRN++N   +      K +  FVLFFDC
Sbjct: 61  VPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDC 120

Query: 133 SEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVA 190
           + E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV+KIDA+K V 
Sbjct: 121 NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVD 180

Query: 191 EVFDAVKAVF 200
           EVFD V  +F
Sbjct: 181 EVFDEVVQIF 190

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 4/178 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IVE +G  H+S GD+ RA I+ G+E G   ++ + +G +VP E
Sbjct: 3   IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62

Query: 84  VTIKLLQKAM-EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++ + +   ++ FL+DGFPR      A +     +    +    + +  +  ++
Sbjct: 63  VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELI 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            R      DN +T+  R +V +  + P++ +Y++K  +  I+  K + +VF  +  + 
Sbjct: 122 ARLTAD--DNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVIL 177

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  132 bits (333), Expect = 1e-39
 Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 5/187 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           +KK  ++FV+GGPGSGKGTQC  IV+ +GYTHLS GDLLRAE+ SGS  G M+  ++++G
Sbjct: 5   LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKG 64

Query: 78  KIVPSEVTIKLLQKAMEESGN--DKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
           ++VP E  + +L+ AM    +    FLIDG+PR  +    FE     +P  +L+ D   E
Sbjct: 65  QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI-GQPTLLLYVDAGPE 123

Query: 136 EMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVF 193
            M +R+L R    GR DDN ETI+KR + + +++ PV+ +YE +G VRK++A   V +VF
Sbjct: 124 TMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVF 183

Query: 194 DAVKAVF 200
             V    
Sbjct: 184 SQVCTHL 190

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  128 bits (322), Expect = 3e-38
 Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 4/178 (2%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ   IV  +G  H+S GD+ RA +K G+  G   +  +  G +VP E
Sbjct: 3   LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDE 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL 142
           VTI ++++   ++   + FL+DGFPR      A E     +    L +    +  +  ++
Sbjct: 63  VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALET-MLADIGRKLDYVIHIDVRQDVLM 121

Query: 143 NRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF 200
            R    +++   T+  R +V ++   P+V +YE KG +R I+  + + +VF  ++ + 
Sbjct: 122 ERLTADDNEA--TVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELL 177

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score =  126 bits (316), Expect = 3e-37
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K     +LG PG+GKGTQ   + ++F   HL+ GD+LRA + SGSE G  ++  +  GK+
Sbjct: 2   KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 61

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           V  E+ ++L++K +E        +         +A        + +  L         + 
Sbjct: 62  VSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDS 121

Query: 140 RILNRNQGR---EDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            ++ R  GR    DDN + ++ R + +   + P+V+YY  +G    IDA++    VF ++
Sbjct: 122 LLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASI 181

Query: 197 KAVFTPKDEKAAA 209
            A F     KA +
Sbjct: 182 LAAF----SKATS 190

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (312), Expect = 2e-36
 Identities = 88/187 (47%), Positives = 130/187 (69%), Gaps = 7/187 (3%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI-KSGSENGTMIQNMIKEG 77
            + +V+FVLGGPG+GKGTQC  +V+ + + HLSAGDLLRAE  ++GS+ G +I+N IKEG
Sbjct: 6   DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEG 65

Query: 78  KIVPSEVTIKLLQKAMEE---SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSE 134
           +IVP E+T+ LL+ A+ +   +   KFLIDGFPR  +   +FE    +E +F+LFFDC E
Sbjct: 66  QIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPE 124

Query: 135 EEMERRILN--RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEV 192
           + M  R+L   +  GR DDN+E+I+KRF  F E+S+PV++Y+E K KV ++   + V +V
Sbjct: 125 DIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDV 184

Query: 193 FDAVKAV 199
           +  V+  
Sbjct: 185 YKDVQDA 191

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  123 bits (310), Expect = 2e-36
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           V +LG PG+GKGTQ   + E  G   +S G+L R  I+ G++ G   +  +  G +VPS+
Sbjct: 3   VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62

Query: 84  VTIKLLQKA-MEESGNDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMER 139
           +T +L+          + F++DG+PR+ E   A   +      + + VL F  SEE +  
Sbjct: 63  LTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLE 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R+  R   R DD  + I  R KV+ + + P+++YY  + +++ +DA   + EVF      
Sbjct: 123 RLKGRG--RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRA 178

Query: 200 F 200
            
Sbjct: 179 L 179

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score =  119 bits (298), Expect = 2e-34
 Identities = 52/193 (26%), Positives = 96/193 (49%), Gaps = 13/193 (6%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           +     ++G PGSGKGT  + I +HF   HLS+GDLLR  +  G+E G + +  I +GK+
Sbjct: 5   RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64

Query: 80  VPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMER 139
           +P +V  +L+   ++      +L+DGFPR      A +   +I  + V+  +   E +++
Sbjct: 65  IPDDVMTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQI--DTVINLNVPFEVIKQ 122

Query: 140 RILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKP---VAEVFDAV 196
           R+ +R         ET+ KR K +   + PV++YY  KG +      +       V+  +
Sbjct: 123 RLTDRP--------ETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFL 174

Query: 197 KAVFTPKDEKAAA 209
           +     + ++ + 
Sbjct: 175 QTKLPQRSQETSV 187

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score =  117 bits (293), Expect = 7e-34
 Identities = 53/196 (27%), Positives = 100/196 (51%), Gaps = 15/196 (7%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
            P  V + G P SGKGTQC  I   +   H+SAGDLLRAEI +GSENG   +  +++G++
Sbjct: 2   DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61

Query: 80  VPSEVTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEM 137
           VP E+ + ++++ + +    +  +L+DG+PR+     A E   +I P+  +  D  +E +
Sbjct: 62  VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-TLEIRPDTFILLDVPDELL 120

Query: 138 ERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVK 197
             R++  +        E ++ R + + ++   ++  Y  +  + K+     V  VF  + 
Sbjct: 121 VERVVFDDT------EEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKID 172

Query: 198 A----VFTPKDEKAAA 209
                +   K+E  ++
Sbjct: 173 ELLGSILEKKNEMVSS 188

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + +LG P +GKGTQ   I+E +G   +S GD+LRA +KSGSE G   ++++  GK+V  E
Sbjct: 3   IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           + I L+++ + +       +         +A       I  ++VL FD  +E +  RI  
Sbjct: 63  LVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRI-- 120

Query: 144 RNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG-----KVRKIDAAKPVAEVFDAVKA 198
                +DD  ET+RKR   + + + P++ YY  +      K  K+D  KPVAEV   ++ 
Sbjct: 121 ----VKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEK 176

Query: 199 V 199
           +
Sbjct: 177 I 177

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (267), Expect = 4e-30
 Identities = 45/178 (25%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + ++G PG+GKGTQ  N+ E F   HL+ GD+LR++I  G++ G   + ++ +G +V  +
Sbjct: 5   MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDD 64

Query: 84  VTIKLLQKAMEESGNDK--FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
           + + +++  +  +   K  F++DGFPR        + + K E    L      +  +  +
Sbjct: 65  IMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLK-EQGTPLEKAIELKVDDELL 123

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           + R       N + ++KR   +   + P+V +Y+  G    +DA++P A V+  +   
Sbjct: 124 VARIT-----NADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 176

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 25/145 (17%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           ++  +G PGSGK T     +    G+ +++  D  ++ +              K+ + + 
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA---HEERDEYKYTKKKEGIV 60

Query: 82  SEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFE--AVTKIEPEFVLFFDCSEEEME 138
           + +     +  +    + K  +I     N E R A+E  A           FD    E+ 
Sbjct: 61  TGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELV 120

Query: 139 RRILNRNQGREDDNVETIRKRFKVF 163
           +R   R    +   ++ +R  +K  
Sbjct: 121 KRNSKRG--TKAVPIDVLRSMYKSM 143

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 62.0 bits (149), Expect = 6e-13
 Identities = 21/180 (11%), Positives = 50/180 (27%), Gaps = 16/180 (8%)

Query: 17  TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 76
           T     +  ++G  GSGK    + +        L    L          +G  + +  ++
Sbjct: 2   TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRK 61

Query: 77  GKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEE 136
             +         +Q+  + S           +        E          ++     + 
Sbjct: 62  PWLQALNDAAFAMQRTNKVSLIV----CSALKKHYRDLLREG---NPNLSFIYLKGDFDV 114

Query: 137 MERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
           +E R+  R         + +  +F+   E           +  V  +D  +P+  V  + 
Sbjct: 115 IESRLKAR--KGHFFKTQMLVTQFETLQE-------PGADETDVLVVDIDQPLEGVVAST 165

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 62.3 bits (150), Expect = 9e-13
 Identities = 23/188 (12%), Positives = 52/188 (27%), Gaps = 15/188 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENG---TMIQNMI 74
           +  V G PG GK T  A + E           ++ GD + A             M +  +
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 75  KEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPE-----FVLF 129
           ++ K +  +    + ++A    G     ID              +            +  
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 130 FDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKP 188
            +   + +  R      + R D + E++      F   +               ++    
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGD 181

Query: 189 VAEVFDAV 196
            +   + +
Sbjct: 182 PSIAANEI 189

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 11/146 (7%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           +  + G  G GK T C  +      +    GD++   +  G         ++       +
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNIT 63

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIE---PEFVLFFDCSEEEMER 139
           ++T+  L         +  ++D     +E  A  + V           +    + EE+ R
Sbjct: 64  DLTVNFLLA------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLR 117

Query: 140 RILNRNQGREDDNVETIRKRFKVFLE 165
           R   R   +++   E   +  + F  
Sbjct: 118 RDALR--KKDEQMGERCLELVEEFES 141

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIK 75
          V+ + G  G+GKGT C  + E   +  L +G + R    +   +   + +   
Sbjct: 5  VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 57.7 bits (138), Expect = 4e-11
 Identities = 30/192 (15%), Positives = 67/192 (34%), Gaps = 21/192 (10%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 77
           VV V G PG G  T     +++       Y  +S G ++    K   EN    ++ +++ 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKM 60

Query: 78  KIVPSEVTIKLLQKAMEE-SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC---- 132
                +   K+  + + E +      +D        +     +       +         
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKV-----RKIDA 185
              +E + RR+ +  + R+ D   TI +   +   +++       A  K+       +D 
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQ 180

Query: 186 AKPVAEVFDAVK 197
           A  V E+ + ++
Sbjct: 181 A--VEELTNVLR 190

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.7 bits (138), Expect = 6e-11
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI 79
           K   + + G   SGK T    I + FG+T+L  G + RA      +N   ++ +     +
Sbjct: 2   KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLAL 61

Query: 80  V-PSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKI 122
           +    ++    +   +        I    R  E      A+  I
Sbjct: 62  LDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAI 105

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 26/178 (14%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE 83
           + + G PG GK T    +    G  +++ GDL R E      +      ++ E +     
Sbjct: 7   ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR----V 62

Query: 84  VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILN 143
           V     Q        D    D FP    +              V         +  R+  
Sbjct: 63  VDELDNQMREGGVIVDYHGCDFFPERWFH-------------IVFVLRTDTNVLYERLET 109

Query: 144 RNQGRE--DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
           R    +   DN++    +              Y+ +  V ++ + KP  E+ + V  +
Sbjct: 110 RGYNEKKLTDNIQCEIFQVLYE-----EATASYKEE-IVHQLPSNKP-EELENNVDQI 160

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 51.5 bits (122), Expect = 5e-09
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 23/183 (12%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHF-GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K   + + G PG+GK +    I     G+ HL  G L++              +   +  
Sbjct: 4   KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEY------DTELDTH 57

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
           I+  +   +LL        +          +  +   F    +     V+    S E + 
Sbjct: 58  IIEEKDEDRLLDFMEPIMVSR----GNHVVDYHSSELFP---ERWFHMVVVLHTSTEVLF 110

Query: 139 RRILNRNQGRE--DDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            R+  R        +N+E   +               YE    +  +     + ++   V
Sbjct: 111 ERLTKRQYSEAKRAENMEAEIQCICEE-----EARDAYEDDIVL--VRENDTLEQMAATV 163

Query: 197 KAV 199
           + +
Sbjct: 164 EEI 166

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 17/183 (9%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS-AGDLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + G PGSGK T    +    G   +    D L   IK    +G +   + +  +
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK----HGRIDPWLPQSHQ 58

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                + I               ++DG  R +   A         P   +    +  E  
Sbjct: 59  QNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTA---LARPLHYIVLRTTAAEAI 115

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKA 198
            R L+R  G +  +   +                   A        + K   +   +   
Sbjct: 116 ERCLDR--GGDSLSDPLVVADLHSQFAD-------LGAFEHHVLPVSGKDTDQALQSAIN 166

Query: 199 VFT 201
              
Sbjct: 167 ALQ 169

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 5e-06
 Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 10/176 (5%)

Query: 21  PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS----AGDLLRAEIKSGSENGTMIQNMIKE 76
           PT++ ++G P  GK      +  +  +  +          R ++    ++        +E
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 77  GKIVPSEVTIKLLQKAM---EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC- 132
           G  +  +  +  L        E G    + D      E RA      +       F +  
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 133 --SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAA 186
               E +   I+    G  D       +  + F+         YE+  + +  D +
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLS 177

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 22/187 (11%)

Query: 20  KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEGK 78
              ++ + GG  +GK      +        L+ G D L   +    ++         +G 
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 79  IVPSEVTIKLLQ------KAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC 132
           +        L         AM  +G    + D F      +  + +         +   C
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121

Query: 133 SEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKID-AAKPVAE 191
                E R   R              R          VV           +D   K   E
Sbjct: 122 DGAVAEGRETAR------------GDRVAGMAAKQAYVVHEGVEYDVE--VDTTHKESIE 167

Query: 192 VFDAVKA 198
              A+ A
Sbjct: 168 CAWAIAA 174

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 21/192 (10%), Positives = 54/192 (28%), Gaps = 4/192 (2%)

Query: 18  VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH--LSAGDLLRAEIKSGSENGTMIQNMIK 75
           V+ PT   + G PGSGK +  + I E        +      +             ++++K
Sbjct: 29  VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVK 88

Query: 76  EGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEE 135
                 + +T  ++ +  ++  N      G   +   + A     K     +      + 
Sbjct: 89  HVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148

Query: 136 EMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDA 195
                 + R +       + +  R        + V         + K      +      
Sbjct: 149 NSYLGTIERYE--TMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNRE 206

Query: 196 VKAVFTPKDEKA 207
              +++  +  +
Sbjct: 207 GVKLYSSLETPS 218

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 13/166 (7%)

Query: 13  DATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQ- 71
            +++    P VV  +G PG+GK T     +   GY H++   L   +    S    + Q 
Sbjct: 6   SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG 65

Query: 72  -NMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFP-----RNEENRAAFEAVTKIEPE 125
             ++ +          + +Q A +     +             N   R   +       +
Sbjct: 66  KRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSD 125

Query: 126 FVL------FFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLE 165
            V+      F   +  E    IL      ++     +++ ++ F E
Sbjct: 126 MVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSE 171

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 39.2 bits (90), Expect = 9e-05
 Identities = 22/178 (12%), Positives = 48/178 (26%), Gaps = 15/178 (8%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
            +P  +F++G  G G  T    +    GY  +                 T    +     
Sbjct: 2   TEP--IFMVGARGCGMTTVGRELARALGYEFVDTDI---------FMQHTSGMTVADVVA 50

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEME 138
                   +   +A++       ++             + +        LF    E  + 
Sbjct: 51  AEGWPGFRRRESEALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALR 110

Query: 139 RRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV 196
            +   +   R       I +  +  L     +  Y +    V  +DA +P A +   +
Sbjct: 111 LQASLQAHQRPTLTGRPIAEEMEAVLREREAL--YQDVAHYV--VDATQPPAAIVCEL 164

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 31/203 (15%), Positives = 65/203 (32%), Gaps = 40/203 (19%)

Query: 28  GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIK 87
           G  G+GK T    +VE      +      R     G++    +++++ + K V  EV   
Sbjct: 9   GLEGAGKTTARNVVVETLEQLGIRDMVFTREP--GGTQLAEKLRSLLLDIKSVGDEVITD 66

Query: 88  L-------------LQKAMEESGNDKFLIDGFPRNEENRAAFEAVT-------------- 120
                         ++  ++ +  +   + G   +   +A                    
Sbjct: 67  KAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAV 126

Query: 121 --KIEPEFVLFFDCSEEEMERRILNRN--QGREDDNVETIRKRFKVFLESSLPVVQYYEA 176
                P+  L+ D + E   +R   R      E ++ +   +    +LE           
Sbjct: 127 LGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLE-------LAAQ 179

Query: 177 KGKVRKIDAAKPVAEVFDAVKAV 199
              +  IDA +P+  V DA++  
Sbjct: 180 DKSIHTIDATQPLEAVMDAIRTT 202

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 32/211 (15%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           ++  ++ + G   +GK TQ   +VE        A   L    +  +E G ++ + +++  
Sbjct: 1   RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA--ELLRFPERSTEIGKLLSSYLQKKS 58

Query: 79  IVPSEVTIKLLQKAMEESGN--------------DKFLIDGFPRNEENRAAFEAVTK--- 121
            V       L      E                 D++   G               K   
Sbjct: 59  DVEDHSVHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPD 118

Query: 122 ---IEPEFVLFFDCSEEEMERRILNRNQGREDDNV-ETIRKRFKVFLESSLPVVQYYEAK 177
               +P+ VLF      +  +R    ++  E+    E   + F   ++         +  
Sbjct: 119 VGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMK---------DTT 169

Query: 178 GKVRKIDAAKPVAEVFDAVKAVFTPKDEKAA 208
              + +DA+K +  V + ++ +       A 
Sbjct: 170 LNWKMVDASKSIEAVHEDIRVLSEDAIATAT 200

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 21/170 (12%), Positives = 44/170 (25%), Gaps = 19/170 (11%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFG------------YTHLSAGDLLRAEIKS---- 62
               V+ + G   SGK T    + +                  +          +     
Sbjct: 20  AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY 79

Query: 63  ---GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV 119
                +   +   + ++ K            +    S    +L D      E        
Sbjct: 80  YYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE 139

Query: 120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLP 169
            +   +FV++ DC  E    R  ++ +      +    K    +LE+  P
Sbjct: 140 WRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEP 189

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK 78
           K P ++ + G  GSGK T  A ++  +GY  L    L         EN       +    
Sbjct: 1   KHPIIIGITGNIGSGKST-VAALLRSWGYPVLDLDAL----AARARENKEEELKRLFPEA 55

Query: 79  IVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLF 129
           +V   +  + L + +         ++     E  R   E ++++E   V  
Sbjct: 56  VVGGRLDRRALARLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFL 106

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 19  KKPTVVFVLGGPGSGKGTQCANIVEHFG---------------YTHLSAGDLLRAEIKSG 63
            +P  V + G  GSGK T   +  ++                         + +   K  
Sbjct: 7   TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWA 66

Query: 64  SENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRN---------EENRA 114
               + +   + +    P+   +K++++++  +            +         EE   
Sbjct: 67  MPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYK 126

Query: 115 AFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGRED----DNVETIRKRFKVFLESSLPV 170
             E    ++ + +++   S E    RI  R +  E       ++ + +  + +L      
Sbjct: 127 FIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIH---- 182

Query: 171 VQYYEAKGKVRKIDA 185
            Q      KV  +DA
Sbjct: 183 -QRRPQSCKVLVLDA 196

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 20/178 (11%), Positives = 41/178 (23%), Gaps = 12/178 (6%)

Query: 24  VFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLRAEIKSGSENGTMIQNMIKEGKIVP 81
           V +LGG  SGK      +   F  T       + +  ++    +                
Sbjct: 10  VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQR 69

Query: 82  SEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRI 141
                      +     D      F    E +A     + I+          +   E   
Sbjct: 70  YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 129

Query: 142 LNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAV 199
                       +  ++  K          +  +          +    + ++ VKAV
Sbjct: 130 DGLRSLGSQKQRQQFQQLLK----------KLLDKYKVPYIEIESPSYLDRYNQVKAV 177

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 9/98 (9%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 23  VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS 82
           ++F+ G   SGK T    I+ ++          ++  +           +     +    
Sbjct: 3   LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFE 62

Query: 83  EVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVT 120
            +          E+  +   ++     E+        +
Sbjct: 63  GIDYD------RETNLNLTKLEVITIMEQAFCYLNGKS 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	100.0
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	100.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	100.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	100.0
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.98
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.98
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.97
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.97
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.85
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.83
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.83
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.81
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.8
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.79
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.78
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.78
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.76
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.76
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.73
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.72
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.72
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.69
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.68
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.68
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.66
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.65
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	99.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	99.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.61
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.61
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.61
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.44
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.41
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.39
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.38
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	99.38
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.36
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.33
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	99.29
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	99.26
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	99.21
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.0
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.86
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.72
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.64
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.61
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	98.51
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.51
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.44
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.44
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.4
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.38
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.36
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.35
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.34
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.32
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.29
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.23
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.22
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.2
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.2
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.2
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.16
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.14
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.13
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.12
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.08
d1okkd2	207	GTPase domain of the signal recognition particle r	98.04
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.03
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.01
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.99
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.96
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.94
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.9
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.87
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.85
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.76
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.72
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.69
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.66
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.66
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.64
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.64
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.63
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.63
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.62
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.62
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.61
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.59
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.59
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.59
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.59
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.58
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.58
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.57
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.57
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.56
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.54
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.51
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.5
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.5
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.48
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.47
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.46
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.44
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.44
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.4
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.39
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.38
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.38
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.38
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.37
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.34
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.34
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.34
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.33
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.33
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.33
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.33
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.29
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.26
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.25
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.25
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.24
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.23
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.23
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.22
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.21
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.2
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.17
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.16
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.15
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.14
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.14
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.1
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.1
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.09
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.06
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.04
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.04
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.02
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.01
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.01
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.98
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.98
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.97
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.95
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.91
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.91
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.9
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.87
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.86
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.86
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.86
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.82
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.82
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.81
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.78
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.78
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.77
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.76
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.71
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.68
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.67
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.67
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.65
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.63
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.61
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.58
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.52
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.48
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.46
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.46
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.44
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.39
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.34
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.28
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.27
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.27
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.23
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.2
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.17
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.13
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.08
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.07
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.98
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.84
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.78
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.77
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.77
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.75
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.71
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.61
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.6
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.39
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.39
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	95.37
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.37
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.35
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	95.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.23
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.16
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.97
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.75
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.67
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.66
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.65
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.63
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.46
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.45
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.1
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.08
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.91
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.87
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	93.86
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	93.69
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.67
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.5
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.48
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.44
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	93.44
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.41
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.16
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.09
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	93.08
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.02
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.77
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	92.46
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.42
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.15
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	92.15
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.04
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.04
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.73
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.04
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	86.39
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	85.87
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.05
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	82.15

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=4.8e-34  Score=204.53  Aligned_cols=187  Identities=54%  Similarity=0.924  Sum_probs=169.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE   95 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   95 (209)
                      |..++|.+|+|.|||||||||+|+.|+++||+.+++.++++++.+..+...+.....+...+...++......+......
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhh
Confidence            56789999999999999999999999999999999999999999888888999999999999999999888888888877


Q ss_pred             cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           96 SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        96 ~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      ....++++||+|....+...+...  ....|+++|+|++|++++.+|+.+|  ...+..+..+.+.+|+..|++...++.
T Consensus        81 ~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~  160 (194)
T d1qf9a_          81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVI  160 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHH
T ss_pred             hhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            668899999999999998887764  4567889999999999999999988  445677788999999999999999999


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ++|...+.++.||++.+++++++.|.+.|..
T Consensus       161 ~~y~~~~~~~~Id~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         161 DHYNKFDKVKIIPANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9999888999999999999999999988754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.9e-32  Score=194.00  Aligned_cols=184  Identities=45%  Similarity=0.844  Sum_probs=168.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +.+|++|+|.|||||||||+|+.|++++|+.+++.+++++..+......+..+.+....+...+++....++...+....
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKV   84 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999887543


Q ss_pred             --CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388           98 --NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        98 --~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                        ..++|+||||++..+...+.. ....+..++++.++.++..+|...+  ...|.++..+.+.+|+..|.+...++.++
T Consensus        85 ~~~~g~ildg~pr~~~qa~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~  163 (194)
T d3adka_          85 DTSKGFLIDGYPREVKQGEEFER-KIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF  163 (194)
T ss_dssp             TTCSCEEEESCCSSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHH
T ss_pred             cccccceeeeccchhHHHHHHHH-HhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence              678999999999999999998 7888999999999999999998887  45677778888999999999999999999


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      |+..+.++.||++.++++++++|.+.|.+
T Consensus       164 y~~~~~~~~Id~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         164 YEKRGIVRKVNAEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HTTTTCEEEEECCSCHHHHHHHHHHHHHT
T ss_pred             HHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            99988999999999999999999988754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-31  Score=190.19  Aligned_cols=187  Identities=48%  Similarity=0.913  Sum_probs=164.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      +.+++.++|+|.|||||||||+|+.|+++||+.+++.++++|..... ++..+..+..+...+...++......+...+.
T Consensus         3 ~~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   82 (196)
T d1ukza_           3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   82 (196)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999987654 57888888889999898888887777766654


Q ss_pred             hc---CCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchh
Q 028388           95 ES---GNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLP  169 (209)
Q Consensus        95 ~~---~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (209)
                      ..   ...++++||+|....+...+.. ....++.+++|+++++++.+|+..|  ..++.+...+.+.+|+..|.+...+
T Consensus        83 ~~~~~~~~~~vl~g~p~~~~q~~~~~~-~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~  161 (196)
T d1ukza_          83 DNVKANKHKFLIDGFPRKMDQAISFER-DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMP  161 (196)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHH-HTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHH
T ss_pred             hhhccCCCceeeeccchhHHHHHHHHH-hccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHH
Confidence            42   3679999999999999998888 7889999999999999999999887  4467788899999999999999999


Q ss_pred             HHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          170 VVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       170 ~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.++|+..+.++.||++.++++++++|.+.|++.
T Consensus       162 l~~~y~~~~~~~~Id~~~s~eeV~~~I~~~i~~~  195 (196)
T d1ukza_         162 VIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRDS  195 (196)
T ss_dssp             HHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence            9999998889999999999999999999988653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=100.00  E-value=7.3e-31  Score=186.80  Aligned_cols=176  Identities=30%  Similarity=0.573  Sum_probs=159.7

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG   97 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (209)
                      +++.+.|+|.|||||||||+|+.|+++||+.+++.++++++.+...+..+......+..+...+++....++...+....
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            46778899999999999999999999999999999999999999899999999999999999999999999999988777


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388           98 NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      ..++|+||||++..+...+..  ...++.+|+|+|+.+++.+|+..|        .+.+.+|+..|.+...++.++|.+.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~~--~~~~~~vi~L~v~~~~l~~R~~~r--------~e~~~kr~~~y~~~~~~v~~~Y~~~  152 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALDR--AYQIDTVINLNVPFEVIKQRLTDR--------PETVVKRLKAYEAQTEPVLEYYRKK  152 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHHT--TCCCCEEEEEECCHHHHHHHHTGS--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcccccccchhhHHHHhhh--cCcceEEEEEeccchhhhhhcccc--------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999999999999988875  567899999999999999998865        4678889999999999999999988


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcCcch
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~~~~  204 (209)
                      +.++.+|++ +.++++++|.+.|....
T Consensus       153 ~~l~~idg~-~~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         153 GVLETFSGT-ETNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             TCEEEEECS-SHHHHHHHHHHHHHTTS
T ss_pred             CCEEEECCC-ChHHHHHHHHHHHHHHh
Confidence            888999987 57999999999987654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=100.00  E-value=8e-31  Score=187.03  Aligned_cols=183  Identities=33%  Similarity=0.594  Sum_probs=162.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-   97 (209)
                      ++++.|+|.|||||||||+|+.|+++||+.+++.++++++....++..+..+......+...+++.+...+...+.... 
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~   80 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC   80 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccc
Confidence            3566777899999999999999999999999999999999988899999999999999999999999999988886543 


Q ss_pred             CCeEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388           98 NDKFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus        98 ~~~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                      ..++|+||||+...+...+...   ....+.++++|+++.+.+.+|+..|. .+.++..+.+.+|+..|.+...++.++|
T Consensus        81 ~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~-~~~d~~~e~i~~R~~~y~~~~~p~~~~y  159 (190)
T d1ak2a1          81 KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL-IHSDDNKKALKIRLEAYHTQTTPLVEYY  159 (190)
T ss_dssp             TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCC-CCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999988877653   45678899999999999999999981 1345678889999999999999999999


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .+.+.++.||++.++++++++|.+.|.+
T Consensus       160 ~~~~~~~~Id~~~s~eeV~~~I~~~l~k  187 (190)
T d1ak2a1         160 SKRGIHSAIDASQTPDVVFASILAAFSK  187 (190)
T ss_dssp             HHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            9988889999999999999999988854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-31  Score=187.32  Aligned_cols=182  Identities=55%  Similarity=0.965  Sum_probs=160.5

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc-CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE----   95 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----   95 (209)
                      |++|+|.|||||||||+|+.|+++||+.+++.++++|..... .+.........+..+..+++......+...+..    
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            789999999999999999999999999999999999988665 567778888889999999999888877776643    


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           96 -SGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        96 -~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                       ....++++||||++..+...+...  ....++.+++++++.+++.+|..+|  ..+|.++..+.+.+++..|.+...++
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l  160 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPI  160 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence             236899999999999988887764  3446688999999999999999998  56788888999999999999999999


Q ss_pred             HHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          171 VQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       171 ~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .++|.+.+.++.||++.++++++++|.+.|.+
T Consensus       161 ~~~y~~~~~~~~IDa~~s~eeV~~~I~~il~k  192 (194)
T d1teva_         161 IDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK  192 (194)
T ss_dssp             HHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence            99999888899999999999999999988754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=5e-31  Score=186.39  Aligned_cols=172  Identities=37%  Similarity=0.671  Sum_probs=154.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      |.|+|.|||||||||+|+.|++++|+.+++.+++++.....++..+..+...+..+...++..+..++...+.... ..+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            4688999999999999999999999999999999999988888888889999999999999998888888776443 678


Q ss_pred             EEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc---
Q 028388          101 FLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK---  177 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  177 (209)
                      +++||+|++..+...+.. ....|+++|+|++|++++.+|+..|      +..+.+.+|+..|++...++.++|...   
T Consensus        81 ~i~~g~pr~~~~~~~~~~-~~~~~~~vi~L~~~~~~l~~R~~~~------~~~e~i~~r~~~y~~~~~~v~~~y~~~~~~  153 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKE-AGINVDYVLEFDVPDELIVDRIVKD------DQEETVRKRLVEYHQMTAPLIGYYSKEAEA  153 (179)
T ss_dssp             EEEESCCCSHHHHHHHHH-TTCCCSEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             eeecccccchHHhhhhhh-ccCCceEEEEeccchhhhhhhhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999988 7889999999999999999999866      456788999999999999998888653   


Q ss_pred             --CcEEEEcCCCChHHHHHHHHHhc
Q 028388          178 --GKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       178 --~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                        ..++.||++.++++++++|.+.|
T Consensus       154 ~~~~~~~IDa~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         154 GNTKYAKVDGTKPVAEVRADLEKIL  178 (179)
T ss_dssp             TSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCHHHHHHHHHHHh
Confidence              36889999999999999998876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2e-30  Score=183.39  Aligned_cols=172  Identities=26%  Similarity=0.559  Sum_probs=154.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC--CC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG--ND   99 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~   99 (209)
                      +.|+|.|+|||||||+|+.|++++|+.+++.+++++......+..+..+...+..+...+.......+...+....  ..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKN   82 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccC
Confidence            5688999999999999999999999999999999999988899999999999999999999999888888877643  67


Q ss_pred             eEEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          100 KFLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      ++++||||++..+...+..+   ....|+++|+|+++++++.+|+..+         +.+.+|+..|++...++.++|.+
T Consensus        83 g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~---------~~~~~r~~~y~~~~~~v~~~y~~  153 (180)
T d1akya1          83 GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNA---------DALKKRLAAYHAQTEPIVDFYKK  153 (180)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSH---------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhccccc---------ccccchHHHHHHHHHHHHHHHHh
Confidence            89999999999888766553   5567999999999999999999866         56778888999999999999999


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      .+.++.||++.+++++++.|.+.|.+
T Consensus       154 ~~~~~~Id~~~~~eeV~~~I~~~l~k  179 (180)
T d1akya1         154 TGIWAGVDASQPPATVWADILNKLGK  179 (180)
T ss_dssp             HTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            88899999999999999999998865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.98  E-value=1.9e-30  Score=183.71  Aligned_cols=177  Identities=32%  Similarity=0.625  Sum_probs=159.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      +.|+|.|||||||||+|+.|+++||+.+++.+++++.........+..+...+..+...+.+....++...+.... ..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            4689999999999999999999999999999999999888888889999999999999999999999988876544 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      +++||+|....+...+...   ....|+++++|+++++++.+|+..|  ++..+..+.+.+|+..|++...++.++|.+ 
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r--~r~~~~~~~i~~rl~~y~~~~~~l~~~y~~-  157 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGR--GRADDTDDVILNRMKVYRDETAPLLEYYRD-  157 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHH--CCTTCSHHHHHHHHHHHHHHTTTHHHHTTT-
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhccc--ccccchhHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999888877654   5568899999999999999999999  888888899999999999999999888864 


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                       .++.||++.++++++++|.+.|.+
T Consensus       158 -~~~~Id~~~s~eeV~~~I~~~l~k  181 (181)
T d2cdna1         158 -QLKTVDAVGTMDEVFARALRALGK  181 (181)
T ss_dssp             -TEEEEECCSCHHHHHHHHHHHTTC
T ss_pred             -CeEEEECCCCHHHHHHHHHHHhCc
Confidence             588999999999999999988753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.97  E-value=1.7e-30  Score=185.11  Aligned_cols=178  Identities=30%  Similarity=0.618  Sum_probs=153.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-   97 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-   97 (209)
                      ++|+.|+|.|||||||||+|+.|++++|+.+++.+++++..+.............+..+...+.......+...+.... 
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccc
Confidence            4789999999999999999999999999999999999999988888888888888888888888877666666655432 


Q ss_pred             -CCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388           98 -NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus        98 -~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                       ..++++|++|+...+...|.. ....|+.+|+|+++++++.+|+..|      +..+.+.+++..|++...++.++|+ 
T Consensus        81 ~~~~~vid~~~~~~~q~~~l~~-~~~~p~~~i~L~~~~e~l~~R~~~~------~~~e~~~~rl~~y~~~~~~l~~~y~-  152 (189)
T d1zaka1          81 QENGWLLDGYPRSYSQAMALET-LEIRPDTFILLDVPDELLVERVVFD------DTEEKVKLRLETYYQNIESLLSTYE-  152 (189)
T ss_dssp             HHTCEEEESCCCSHHHHHHHHT-TTCCCSEEEEEECCHHHHHHHHTTT------CCTTHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ccCcEEeeccchhhHHHhhhhh-cccccchheeechhhhhhhhhcccc------chHHHHHHHHHHHHHHHHHHHHHhC-
Confidence             578999999999999999988 7788999999999999999999765      2235677899999999888888774 


Q ss_pred             cCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          177 KGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       177 ~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                       +.++.+|++.++++++++|.+.|....+
T Consensus       153 -~~~~~Id~~~~idev~~~I~~~l~~il~  180 (189)
T d1zaka1         153 -NIIVKVQGDATVDAVFAKIDELLGSILE  180 (189)
T ss_dssp             -CCEEEEECSSCHHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence             5688999999999999999988866543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.97  E-value=2.1e-29  Score=178.45  Aligned_cols=176  Identities=32%  Similarity=0.636  Sum_probs=156.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      |.|+|.|+|||||||+|+.|+++||+.+++.+++++......+..+..+...+..+...++......+...+.... ..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            4689999999999999999999999999999999999988899999999999999999999999988888886544 678


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      +++||+|++..+...+.+.   ....+.++++|+++.+.+.+|+..+      +.++.+.+|+..|.+...++.++|.+.
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~------~~~e~i~~R~~~y~~~~~~i~~~y~~~  154 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTAD------DNPDTVTNRLEVNMNQTAPLLAFYDSK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhcc------chhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999988877663   4446678999999999999997644      456888999999999999999999988


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      +.++.||++.+++++++.|.+.|+..
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         155 EVLVNINGQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999998753

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.4e-28  Score=174.12  Aligned_cols=175  Identities=31%  Similarity=0.635  Sum_probs=155.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCe
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDK  100 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~  100 (209)
                      |.|+|.|+|||||||+|+.|+++||+.+++.+++++......+..+..+..++..+...++......+...+.... ...
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            4689999999999999999999999999999999999888888899999999999999999988888877765433 789


Q ss_pred             EEEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhc
Q 028388          101 FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAK  177 (209)
Q Consensus       101 ~i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (209)
                      +++++++....+...+...   ....++++++|+++.+.+.+|+..+      +..+.+.+|+..|++...++.++|.+.
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~------~~~e~~~~Rl~~y~~~~~~l~~~y~~~  154 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTAD------DNEATVANRLEVNMKQMKPLVDFYEQK  154 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTT------CSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccc------cchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999998877666554   5567889999999999999999865      356789999999999999999999988


Q ss_pred             CcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          178 GKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       178 ~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +.++.||++.++++++++|.+.|..
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~~L~~  179 (182)
T d1zina1         155 GYLRNINGEQDMEKVFADIRELLGG  179 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999998864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.5e-21  Score=134.07  Aligned_cols=160  Identities=14%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-------HHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-------IKLLQK   91 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~   91 (209)
                      ..+++|+|+|+|||||||+|+.|++++++.+++.+++.......          ....+........       ...+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIE----------KMASGEPLNDDDRKPWLQALNDAAFA   73 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHH----------HHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhh----------hhccCcceehhhhHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999987754332111          0111111111111       122222


Q ss_pred             HHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           92 AMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                      .+.  ....++.+...........+.  ....+..+|||++|++++.+|+..|  +......+.+..++..+..   +  
T Consensus        74 ~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~l~~~~e~~~~Rl~~R--~~~~~~~~~~~~~~~~~e~---~--  142 (171)
T d1knqa_          74 MQR--TNKVSLIVCSALKKHYRDLLR--EGNPNLSFIYLKGDFDVIESRLKAR--KGHFFKTQMLVTQFETLQE---P--  142 (171)
T ss_dssp             HHH--HCSEEEEECCCCSHHHHHHHH--TTCTTEEEEEEECCHHHHHHHHHTS--TTCCCCHHHHHHHHHHCCC---C--
T ss_pred             HHh--ccCceEeeccchHHHHHHHHH--HhCCCceEEeecCCHHHHHHHHHhC--cCCCccHHHHHhhHHHhhC---C--
Confidence            222  245566654433344444443  4566678999999999999999988  5444555555554443322   1  


Q ss_pred             HHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          172 QYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       172 ~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                        ......++++|++.++++++++|.+.|+
T Consensus       143 --~~~e~~~~~id~~~~~e~v~~~i~~~lk  170 (171)
T d1knqa_         143 --GADETDVLVVDIDQPLEGVVASTIEVIK  170 (171)
T ss_dssp             --CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred             --CcccCCEEEEeCCCCHHHHHHHHHHHhc
Confidence              1223357889999999999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.85  E-value=8.8e-21  Score=132.12  Aligned_cols=160  Identities=17%  Similarity=0.282  Sum_probs=100.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC-CCeEE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFL  102 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~i  102 (209)
                      |+++|+|||||||+++.||++||+++++.|+++.+..  +....+.+...   +    .+.........+.... ...++
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~--g~~i~ei~~~~---g----~~~~~~~~~~~l~~~~~~~~~~   75 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMTVADVVAAE---G----WPGFRRRESEALQAVATPNRVV   75 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSCHHHHHHHH---H----HHHHHHHHHHHHHHHCCSSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh--hhhhhhhhccc---c----hHHHHHHHHHHHHhhcccccee
Confidence            6678999999999999999999999999998876542  22222222110   1    1112233333333222 33344


Q ss_pred             EeC--CCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          103 IDG--FPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       103 ~dg--~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      ..+  .+........+.. .    ..+|||++|++++.+|+..|  ...|+........+.+....+...++   |....
T Consensus        76 ~~~~~~~~~~~~~~~l~~-~----~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~l---Y~~~a  147 (170)
T d1e6ca_          76 ATGGGMVLLEQNRQFMRA-H----GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL---YQDVA  147 (170)
T ss_dssp             ECCTTGGGSHHHHHHHHH-H----SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH---HHHHC
T ss_pred             cccccchhhhHHHHhhhc-c----ceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHH---HHHcC
Confidence            432  3333444444444 2    36999999999999999877  33445555555566655555544455   33333


Q ss_pred             cEEEEcCCCChHHHHHHHHHhcC
Q 028388          179 KVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       179 ~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      . +++|++.++++++++|.+.|+
T Consensus       148 ~-~~Id~~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         148 H-YVVDATQPPAAIVCELMQTMR  169 (170)
T ss_dssp             S-EEEETTSCHHHHHHHHHHHTT
T ss_pred             C-EEEcCCCCHHHHHHHHHHHcC
Confidence            3 578888899999999988764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=8.4e-21  Score=136.63  Aligned_cols=174  Identities=17%  Similarity=0.289  Sum_probs=100.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCC-----CCHH--------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKI-----VPSE--------   83 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------   83 (209)
                      ++++|+|+|++||||||+++.|++.|   |+..+..   .++  +.++..+..+++.+.....     ....        
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~---~~e--p~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF---TRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYA   75 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE---EES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE---ecC--CCCccchhhhHHHHhccccccccccchHHHHHHHHH
Confidence            46789999999999999999999988   3322110   000  1122233333333322111     1110        


Q ss_pred             ----HHHHHHHHHHHhcCCCeEEEeCCCCC------------HHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc-
Q 028388           84 ----VTIKLLQKAMEESGNDKFLIDGFPRN------------EENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR-  144 (209)
Q Consensus        84 ----~~~~~i~~~~~~~~~~~~i~dg~~~~------------~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r-  144 (209)
                          .....+...+.  .+..+|+|+|..+            ......+...  ....||++|||++|++++.+|+.+| 
T Consensus        76 ~~~~~~~~~i~~~l~--~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~  153 (210)
T d4tmka_          76 ARVQLVETVIKPALA--NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG  153 (210)
T ss_dssp             HHHHHHHHTHHHHHH--TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHH--cCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhcc
Confidence                11222233333  4788999975422            1222222221  4578999999999999999999999 


Q ss_pred             cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchhh
Q 028388          145 NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (209)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~~  206 (209)
                      ...+.+.....+.+++...+      .+.+.....+++||++.+++++.+.|.+.|....++
T Consensus       154 ~~~~~~~~~~~~~~~v~~~y------~~~~~~~~~~~~IDa~~~~e~v~~~I~~~i~~~l~~  209 (210)
T d4tmka_         154 ELDRIEQESFDFFNRTRARY------LELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKE  209 (210)
T ss_dssp             SCCTTTTSCHHHHHHHHHHH------HHHHHTCTTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhccHHHHHHHHHHH------HHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence            11121222223333332211      122344457899999999999999999988776543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2e-19  Score=128.99  Aligned_cols=170  Identities=14%  Similarity=0.225  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHH-----------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVT-----------   85 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   85 (209)
                      ++.+|+|+|++||||||+++.|++.|   |..++....    . ...+..+..+..++......+....           
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~----p-~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~   76 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRF----P-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQ   76 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES----S-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC----C-CCCcccchhhhhhhhcccccchhhhhhHHHHHHHHH
Confidence            67899999999999999999999988   343432110    0 0011223333333332222222111           


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCH------------HHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH
Q 028388           86 IKLLQKAMEESGNDKFLIDGFPRNE------------ENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV  153 (209)
Q Consensus        86 ~~~i~~~~~~~~~~~~i~dg~~~~~------------~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~  153 (209)
                      ...+...+.  .+..||+|.|..+.            .+...+.. ..+.||++|||++|++++.+|...+  +...+..
T Consensus        77 ~~~i~~~l~--~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~-~~~~PDl~i~Ld~~~e~~~~R~~~~--~~~~E~~  151 (209)
T d1nn5a_          77 VPLIKEKLS--QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDV-GLPKPDLVLFLQLQLADAAKRGAFG--HERYENG  151 (209)
T ss_dssp             HHHHHHHHH--TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGT-TSBCCSEEEEEECCHHHHHHC-------CTTCSH
T ss_pred             HHhHHHHhh--cccceeecchhhhhhhhhhhccCccHHHHHHHhc-cCCCCceeeeecccHHHHhhhhccc--ccccccH
Confidence            223344444  47889999874321            11122222 5668999999999999999998766  3333444


Q ss_pred             HHHHHHHHHHHhhchhHHHHHhh-cCcEEEEcCCCChHHHHHHHHHhcCcchhh
Q 028388          154 ETIRKRFKVFLESSLPVVQYYEA-KGKVRKIDAAKPVAEVFDAVKAVFTPKDEK  206 (209)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~ee~~~~i~~~i~~~~~~  206 (209)
                      +.+.+....|.+.       +.. ...+++||++.+++++.++|...+......
T Consensus       152 ~~~~r~~~~Y~~l-------~~~~~~~~~~IDa~~~~e~V~~~I~~~v~~~l~~  198 (209)
T d1nn5a_         152 AFQERALRCFHQL-------MKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT  198 (209)
T ss_dssp             HHHHHHHHHHHHH-------TTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-------HHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHHh
Confidence            4333222233231       222 236899999999999999999888765543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.81  E-value=2.1e-20  Score=132.31  Aligned_cols=173  Identities=14%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-------HHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-------EVTIKLL   89 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i   89 (209)
                      ++|+|+|+|||||||+++.|+++|+     +..++.++..+..............     ....+.       ......+
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   76 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDE-----MRKLSVEKQKKLQIDAAKGI   76 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHH-----HTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHHHHHhhhhhhh-----ccccchhhcccCHHHHHHHH
Confidence            5789999999999999999999995     3456677776655443221110000     011111       1112233


Q ss_pred             HHHHHhcCCCeEEEeCCCCCHHH-------HHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHH
Q 028388           90 QKAMEESGNDKFLIDGFPRNEEN-------RAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFK  161 (209)
Q Consensus        90 ~~~~~~~~~~~~i~dg~~~~~~~-------~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~  161 (209)
                      ...........+++|++......       ...+.  ....|++++||++|++++.+|+.+| ...+.....+.+.++..
T Consensus        77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~  154 (194)
T d1nksa_          77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVI--TEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETI  154 (194)
T ss_dssp             HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHH--HHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHH
T ss_pred             HHHHHHhCCCcEEEEccCchHHHHHHHHhHHHHHH--hhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence            33444444677788865432111       01111  2346899999999999999999988 44555666677666666


Q ss_pred             HHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          162 VFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .+.+........+.....+++.+++.++++++++|.+.|+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~ik  194 (194)
T d1nksa_         155 NFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK  194 (194)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            5555443333333333344555568899999999998774

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.80  E-value=1.4e-19  Score=124.87  Aligned_cols=157  Identities=15%  Similarity=0.206  Sum_probs=88.3

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLI  103 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~  103 (209)
                      |+|+|+|||||||+++.||++||+++++.|+++.+..  +..........   +.. ........+...+... ...++.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~--g~~i~~~~~~~---g~~-~~r~~e~~v~~~l~~~-~~~v~~   75 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQKVSEIFEQK---REN-FFREQEQKMADFFSSC-EKACIA   75 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSCHHHHHHHH---CHH-HHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH--hhhhhhHHHhh---hhc-cchhhhhhhchhhhhc-cccccc
Confidence            7888999999999999999999999999998876642  22222222111   110 0111122233333322 233333


Q ss_pred             eCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcCcEEE
Q 028388          104 DGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRK  182 (209)
Q Consensus       104 dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (209)
                      -+-.  ......     .....++|||++|.+++.+|+..| ...|+........+.+   .+...++   |+..+++ +
T Consensus        76 ~~g~--~~~~~~-----l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l---~~~r~~~---Y~~~ad~-~  141 (161)
T d1viaa_          76 TGGG--FVNVSN-----LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKL---YNERLSK---YEQKANF-I  141 (161)
T ss_dssp             CCTT--GGGSTT-----GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHH---HHHHHHH---HHHHCSE-E
T ss_pred             cccc--hhhHHH-----HHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHH---HHHHHHH---HHhhCCE-E
Confidence            3211  111111     123467999999999999999877 2223321112212221   1112222   4444444 4


Q ss_pred             EcC-CCChHHHHHHHHHhcC
Q 028388          183 IDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       183 id~-~~~~ee~~~~i~~~i~  201 (209)
                      +|+ +.++++++++|.+.|+
T Consensus       142 Idt~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         142 LNIENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             EECTTCCHHHHHHHHHHHHC
T ss_pred             EECCCCCHHHHHHHHHHHhC
Confidence            564 6799999999998764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=5.4e-19  Score=122.32  Aligned_cols=158  Identities=20%  Similarity=0.297  Sum_probs=88.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK  100 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  100 (209)
                      |++| ++|+|||||||+++.|+++||+++++.|+.+.+..  +....+....   .+...........+...+..  ...
T Consensus         2 p~Iv-liG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~--g~~i~~~~~~---~g~~~~r~~e~~~~~~~~~~--~~~   73 (165)
T d2iyva1           2 PKAV-LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRSIADIFAT---DGEQEFRRIEEDVVRAALAD--HDG   73 (165)
T ss_dssp             CSEE-EECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSCHHHHHHH---HCHHHHHHHHHHHHHHHHHH--CCS
T ss_pred             CcEE-EECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh--hhhhhhhhhh---hhHHHHHHHHhhhhhhcccc--ccc
Confidence            4544 55999999999999999999999999998876642  2222222211   11111122223344444432  233


Q ss_pred             EEEeCCC--CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCC-CCCc-HHHHHHHHHHHHhhchhHHHHHh
Q 028388          101 FLIDGFP--RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGR-EDDN-VETIRKRFKVFLESSLPVVQYYE  175 (209)
Q Consensus       101 ~i~dg~~--~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (209)
                      ++..|-.  ........ .     ....+|||.++++++.+|+..+ .++. .... .+.+.+    ..+...+   .|.
T Consensus        74 vi~~gg~~~~~~~~~~~-l-----~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~----l~~eR~~---~Y~  140 (165)
T d2iyva1          74 VLSLGGGAVTSPGVRAA-L-----AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRA----LMAKRAP---LYR  140 (165)
T ss_dssp             EEECCTTGGGSHHHHHH-H-----TTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHH----HHHHHHH---HHH
T ss_pred             ccccccccccccccccc-c-----cccceeeeeccchhhhhcccccccchhccCccHHHHHHH----HHHHHHH---HHH
Confidence            4443322  22222111 1     2345899999999999999765 2111 1122 233332    2222223   344


Q ss_pred             hcCcEEEEcC-CCChHHHHHHHHHhc
Q 028388          176 AKGKVRKIDA-AKPVAEVFDAVKAVF  200 (209)
Q Consensus       176 ~~~~~~~id~-~~~~ee~~~~i~~~i  200 (209)
                      +.+++ ++|+ +.++++++++|.+.|
T Consensus       141 ~~ad~-~Idt~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         141 RVATM-RVDTNRRNPGAVVRHILSRL  165 (165)
T ss_dssp             HHCSE-EEECSSSCHHHHHHHHHTTS
T ss_pred             hhCCE-EEECCCCCHHHHHHHHHhcC
Confidence            44444 5665 569999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.79  E-value=1.5e-19  Score=125.90  Aligned_cols=165  Identities=15%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      ++|+|+|+|||||||+|+.|+++++..++..++.++..+..............    ..........+...+.  .+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~   76 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELL----ALTWKNITDLTVNFLL--AQNDV   76 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHH----HHHHHHHHHHHHHHHH--TTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHh--cCCCc
Confidence            58999999999999999999999998877666666655333211110000000    0001112333333333  47889


Q ss_pred             EEeCCCCCHHHHHHHHHh---cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHHhhcC
Q 028388          102 LIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKG  178 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~---~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (209)
                      ++|+..............   ....+..+++|.++++++.+|+..|  ++.........+.+..+..        .....
T Consensus        77 iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R--~~~~~~~~~~~~~~~~~~~--------~~~~~  146 (176)
T d2bdta1          77 VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALR--KKDEQMGERCLELVEEFES--------KGIDE  146 (176)
T ss_dssp             EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTS--CC----CGGGGHHHHHHHH--------TTCCT
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhC--CCchhhhHHHHHHHHHHHh--------CCCCC
Confidence            999876665544433322   2334456899999999999999998  4332222222222222111        11122


Q ss_pred             cEEEEcCCCChHHHHHHHHHhcCc
Q 028388          179 KVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       179 ~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..++.+++.+++++.+.|.+.++.
T Consensus       147 ~~~id~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         147 RYFYNTSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             TSEEECSSSCGGGHHHHHHHHHHC
T ss_pred             eEEEECCCCCHHHHHHHHHHHHhc
Confidence            333444466899999999888754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.7e-18  Score=117.01  Aligned_cols=157  Identities=17%  Similarity=0.206  Sum_probs=101.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      .+..++|.+|+++|+|||||||+|+.|++.+++.+++.|++...                        ......+...+.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~   63 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW------------------------QRCVSSCQAALR   63 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH------------------------HHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH------------------------HHHHHHHHHHHH
Confidence            34457899999999999999999999999999999999775321                        112445555555


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc--cCCCCCCcHHHHHHHHHHHHhhchhH
Q 028388           95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPV  170 (209)
Q Consensus        95 ~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (209)
                        .+..||+|+......++..+..+  .......+|++++|.+++.+|+..|  ........++.....+...  ...|.
T Consensus        64 --~g~~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~--fe~P~  139 (172)
T d1yj5a2          64 --QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQ--FEPPT  139 (172)
T ss_dssp             --TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHH--CCCCC
T ss_pred             --CCCCceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHh--CCCCC
Confidence              47899999988888877766554  2223345899999999999999999  2222222223333222211  11121


Q ss_pred             HHHHhhcCcEEEEcC--CCChHHHHHHHHHhcC
Q 028388          171 VQYYEAKGKVRKIDA--AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       171 ~~~~~~~~~~~~id~--~~~~ee~~~~i~~~i~  201 (209)
                      ..  +.-..++.++.  ....++..+++...+.
T Consensus       140 ~~--Egf~~i~~i~~~~~~~~d~~~~kl~~qy~  170 (172)
T d1yj5a2         140 LA--EGFLEILEIPFRLQEHLDPALQRLYRQFS  170 (172)
T ss_dssp             GG--GSCSCEEEECCCCCTTSCHHHHHHHTSCC
T ss_pred             cc--cCCcEEEEECCccCCccCHHHHHHHHHhh
Confidence            10  11235666654  3355666676665543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.78  E-value=1.6e-18  Score=120.71  Aligned_cols=165  Identities=16%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC-CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG-YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-   95 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-   95 (209)
                      .++++.|+|+|+|||||||+|+.|+++++ +.+++.+++.... ........      ..+...........+.+.+.. 
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~   74 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-HFYTEYDT------ELDTHIIEEKDEDRLLDFMEPI   74 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-TCSCC------------CCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHH-hhhhhHHH------hhcccchHHHHHHHHHHHHHhh
Confidence            56789999999999999999999999997 5666665555443 22111111      111222333333333332221 


Q ss_pred             -cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHHH
Q 028388           96 -SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYY  174 (209)
Q Consensus        96 -~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (209)
                       ..+..+++|++.....        ....++.+|||+||++++.+|+..|  +........ ......+........+.|
T Consensus        75 i~~~~~~~~~~~~~~~~--------~~~~~~~vI~L~~~~e~l~~Rl~~R--~~~~~~~~~-~~~~e~~~~~~~~~~~~~  143 (174)
T d1y63a_          75 MVSRGNHVVDYHSSELF--------PERWFHMVVVLHTSTEVLFERLTKR--QYSEAKRAE-NMEAEIQCICEEEARDAY  143 (174)
T ss_dssp             HTSSSEEEEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT--TCCHHHHHH-HHHHHHTTHHHHHHHHHS
T ss_pred             hhhcccccccHHHHHHH--------HHhcCceEEEEECCHHHHHHHHHhC--CCccccccc-chhhhhhhhhHHHHHHhh
Confidence             1367888887654321        1234668999999999999999988  432111110 000011111111222333


Q ss_pred             hhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          175 EAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       175 ~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ..  .+++.+++.+++++.+.|.+.+.+
T Consensus       144 ~~--~~~i~~~~~t~ee~~~~V~~I~~~  169 (174)
T d1y63a_         144 ED--DIVLVRENDTLEQMAATVEEIRER  169 (174)
T ss_dssp             CG--GGEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cC--CEEEECCCCCHHHHHHHHHHHHHH
Confidence            22  234444466899988777765543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.78  E-value=9.9e-19  Score=123.06  Aligned_cols=173  Identities=14%  Similarity=0.225  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHH---HHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEV---TIKLLQKAM   93 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~   93 (209)
                      ++|+|+|+|||||||+++.|+++|+     ...++.++..+...........     ...........   ........+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSD-----RDQMRKMDPETQKRIQKMAGRKI   76 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSS-----GGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhh-----hhhhhhhhchhhHHHHHHHHHHH
Confidence            6899999999999999999999985     4456677777665443211100     00001111111   111112222


Q ss_pred             Hh-cCCCeEEEeCCCCCHHHH------HHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cCCCCCCcHHHHHHHHHHHHh
Q 028388           94 EE-SGNDKFLIDGFPRNEENR------AAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQGREDDNVETIRKRFKVFLE  165 (209)
Q Consensus        94 ~~-~~~~~~i~dg~~~~~~~~------~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~~~~~~~~~~~~~~~~~~~~  165 (209)
                      .. ..+..+++|+++......      ..... ....|+.+|||+++++++.+|+.+| .+++.......+.. ...+..
T Consensus        77 ~~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~-~~~~~~  154 (190)
T d1khta_          77 AEMAKESPVAVDTHSTVSTPKGYLPGLPSWVL-NELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQ-HQFMNR  154 (190)
T ss_dssp             HHHHTTSCEEEECCSEEEETTEEEESSCHHHH-HHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHH-HHHHHH
T ss_pred             HHHhCCCeEEECCcccchHHHHHHHhhhhhhh-hhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHH-HHHHHH
Confidence            11 236789999876432111      11111 3346889999999999999999887 44555555554433 333333


Q ss_pred             hchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          166 SSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       166 ~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .....+..+......++++++.++|+++++|.+.|+
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         155 CAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhCCCeEEEECCCCCHHHHHHHHHHHhC
Confidence            333333333333334456678899999999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.76  E-value=2e-18  Score=117.66  Aligned_cols=134  Identities=17%  Similarity=0.265  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH-hCCceecHhHHHHHHHHcCCchH----HHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH-FGYTHLSAGDLLRAEIKSGSENG----TMIQNMIKEGKIVPSEVTIKLLQKAMEES   96 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~-l~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (209)
                      .+|+|+|+|||||||+|+.|.+. .++.+++.+++............    ......       ........+...+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~   75 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILYGG   75 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHH-------HHHHHHHHHHHHHHhh
Confidence            57899999999999999998654 57899999887766533222111    000000       0122244444454443


Q ss_pred             C-CCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHH
Q 028388           97 G-NDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFL  164 (209)
Q Consensus        97 ~-~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~  164 (209)
                      . ...+|+|+.+........+..+  ....+..+|+|++|.+++.+|+..|  +....+.+.+.+.+..|.
T Consensus        76 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~i~~~~~~~~  144 (152)
T d1ly1a_          76 DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR--GTKAVPIDVLRSMYKSMR  144 (152)
T ss_dssp             SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC--GGGCCCHHHHHHHHHHHH
T ss_pred             ccCCCcccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHHH
Confidence            2 5689999887777666655543  3334567999999999999999998  544555566655544443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.7e-17  Score=117.37  Aligned_cols=166  Identities=18%  Similarity=0.193  Sum_probs=98.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHH----------------
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSE----------------   83 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------   83 (209)
                      .|++|.|+|++||||||+|+.|. .+|+.+++.|.+.+......................+...                
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            58999999999999999999995 6999999998888776544321111100000000111111                


Q ss_pred             ------HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHH
Q 028388           84 ------VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIR  157 (209)
Q Consensus        84 ------~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~  157 (209)
                            .....+...........+++|+.......       ....++++||++||.+++.+|+.+|  .  ....+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~-------~~~~~d~vI~v~a~~e~r~~Rl~~R--~--~~~~~~~~  149 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG-------WEGRLHGTLLVAAPLEERVRRVMAR--S--GLSREEVL  149 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT-------CGGGSSEEEEECCCHHHHHHHHHTT--T--CCTTHHHH
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEeecccccc-------ccccceeEEEEecchhhHHHHHHhc--c--cchHHHHH
Confidence                  11222223333334677788864322111       2224689999999999999999987  2  22334444


Q ss_pred             HHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcc
Q 028388          158 KRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~  203 (209)
                      .++..    ..+.... ....+ ++|+++.+++++..+|.++++..
T Consensus       150 ~~~~~----q~~~~~~-~~~aD-~vI~N~~s~~~l~~~v~~il~~l  189 (191)
T d1uf9a_         150 ARERA----QMPEEEK-RKRAT-WVLENTGSLEDLERALKAVLAEL  189 (191)
T ss_dssp             HHHTT----SCCHHHH-HHHCS-EEECCSSHHHHHHHHHHHHHHSC
T ss_pred             HHHHh----CCCHHHH-HHhCC-EEEECCCCHHHHHHHHHHHHHHc
Confidence            43221    1222222 22233 46778789999999999888653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.73  E-value=1.4e-16  Score=113.81  Aligned_cols=162  Identities=17%  Similarity=0.152  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCH-----HHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPS-----EVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------   85 (209)
                      ++|+|+|++||||||+|+.|. .+|+++++.|.+.++.+..+......+...+......++     ..+           
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~~   81 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhhh
Confidence            689999999999999999996 689999999999988766666555555544433222211     111           


Q ss_pred             -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                 ...+...........+++|. |...+.  .    ....++.+|+++||++++.+|+..|    ...+.+
T Consensus        82 ~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~-~ll~e~--~----~~~~~d~ii~v~~~~~~r~~R~~~R----~~~s~e  150 (205)
T d1jjva_          82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIEN--K----LTALCDRILVVDVSPQTQLARSAQR----DNNNFE  150 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTT--T----CGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred             hHhhcccCHHHHHHHHHHHhhccCCeEEEEe-cccccc--c----hhhhhhheeeecchHHHHHHHHHhc----CCchHH
Confidence                       22333333433455677775 322221  1    2234689999999999999999977    344566


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .+..++....    +..+ .....+ ++|+++++.++..+++.+.+.
T Consensus       151 ~~~~~~~~Q~----~~~~-k~~~aD-~vI~N~~~l~~~~~~l~~~i~  191 (205)
T d1jjva_         151 QIQRIMNSQV----SQQE-RLKWAD-DVINNDAELAQNLPHLQQKVL  191 (205)
T ss_dssp             HHHHHHHHSC----CHHH-HHHHCS-EEEECCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC----CHHH-HHHhCC-EEEECCCChHHHHHHHHHHHH
Confidence            6666654321    1111 122233 467777788777666655443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.72  E-value=1.3e-16  Score=110.53  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=69.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKF  101 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  101 (209)
                      +.|+|+|+|||||||+|+.|++++|+++++.++.++..........      ...............+.....   ..+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~   75 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDE------EYDCPILDEDRVVDELDNQMR---EGGV   75 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCS------SSSCCCBCHHHHHHHHHHHHH---HCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhH------HhhhhhHHHHHHHHHhhhhhh---cCCc
Confidence            4577999999999999999999999999999998876421111100      011222333444444444443   3445


Q ss_pred             EEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc
Q 028388          102 LIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus       102 i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      .++++.....        .......+|||+|+++++.+|+.+|
T Consensus        76 ~~~~~~~~~~--------~~~~~~~~i~l~~~~~~~~~Rl~~r  110 (173)
T d1rkba_          76 IVDYHGCDFF--------PERWFHIVFVLRTDTNVLYERLETR  110 (173)
T ss_dssp             EEECSCCTTS--------CGGGCSEEEEEECCHHHHHHHHHHT
T ss_pred             ccchhHHHHH--------HHhcCCCcceecCCHHHHHHHHHhc
Confidence            6665442211        1123567999999999999999988

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.72  E-value=1.1e-17  Score=116.44  Aligned_cols=162  Identities=17%  Similarity=0.217  Sum_probs=93.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecH-hHHHHHHHHcCCc-----hHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA-GDLLRAEIKSGSE-----NGTMIQNMIKEGKIVPSEVTIKLLQKAM   93 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~   93 (209)
                      .+.+|+|+|+|||||||+|+.|++++|.++++. ++.++..+.....     .........       .......+....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~   75 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI-------MQIAADVAGRYA   75 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHH-------HHHHHHHHHHHH
Confidence            468999999999999999999999999877653 2444443322110     000000000       011122222222


Q ss_pred             HhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHHH
Q 028388           94 EESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQY  173 (209)
Q Consensus        94 ~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (209)
                      .  .+..+|+|+..... ....+.  ....+..++||+++++++.+|+..|  ++...........+......       
T Consensus        76 ~--~~~~vi~~~~~~~~-~~~~~~--~~~~~~~~i~l~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~-------  141 (176)
T d1zp6a1          76 K--EGYFVILDGVVRPD-WLPAFT--ALARPLHYIVLRTTAAEAIERCLDR--GGDSLSDPLVVADLHSQFAD-------  141 (176)
T ss_dssp             H--TSCEEEECSCCCTT-TTHHHH--TTCSCEEEEEEECCHHHHHHHHHTT--CTTSCCCHHHHHHHHHHTTC-------
T ss_pred             h--cCCCeEecccccHH-HHHHHH--hcccccccccCCCCHHHHHHHHHhC--CCccccchhhHHHHHHHHhh-------
Confidence            2  47888999865332 222333  2345667899999999999999998  44333222222222221111       


Q ss_pred             HhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          174 YEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       174 ~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      +......++.+++.+++++++.|.+.+++
T Consensus       142 ~~~~~~~~idt~~~~~ee~~~~I~~~l~~  170 (176)
T d1zp6a1         142 LGAFEHHVLPVSGKDTDQALQSAINALQS  170 (176)
T ss_dssp             CGGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred             cccccCEEEECCCCCHHHHHHHHHHHHHc
Confidence            12222334445677899999999888765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=6.9e-17  Score=116.08  Aligned_cols=172  Identities=14%  Similarity=0.246  Sum_probs=89.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHHcCCchHHHHHHHHHcCC-CCCHHHH----------
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKSGSENGTMIQNMIKEGK-IVPSEVT----------   85 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------   85 (209)
                      .|+++|+|+|+.||||||+++.|++.|..  ..+...       ..++..+..+++++.... ..+....          
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p-------~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~   73 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFP-------ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE   73 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESS-------CTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEEC-------CCCchHhHhHHHhhhhccccccchHHHHHHHHHHHH
Confidence            37899999999999999999999999953  222210       112223333343332221 1111111          


Q ss_pred             -HHHHHHHHHhcCCCeEEEeCCCCCHH-----------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCC-C
Q 028388           86 -IKLLQKAMEESGNDKFLIDGFPRNEE-----------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGRE-D  150 (209)
Q Consensus        86 -~~~i~~~~~~~~~~~~i~dg~~~~~~-----------~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~-~  150 (209)
                       ...+...+.  .+..||+|+|..+--           .......+  ..+.||++|||++++++..+|..++  +.. .
T Consensus        74 ~~~~i~~~l~--~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~--~~~~~  149 (214)
T d1tmka_          74 IVDKIKKDLL--EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF--GDERY  149 (214)
T ss_dssp             THHHHHHHHH--TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------C--CSSTT
T ss_pred             HHHHHHHHHh--cCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhccc--chhhh
Confidence             111222333  478999998743211           01111111  4568999999999999988887766  222 2


Q ss_pred             CcHHHHHHHHH-HHHhhchhHHHHHhhcCcEEEEcC-CCChHHHHHHHHHhcCcch
Q 028388          151 DNVETIRKRFK-VFLESSLPVVQYYEAKGKVRKIDA-AKPVAEVFDAVKAVFTPKD  204 (209)
Q Consensus       151 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~id~-~~~~ee~~~~i~~~i~~~~  204 (209)
                      +..+ +.+++. .|.+.....  .......++++|+ +.+++++.+.|.+.++...
T Consensus       150 e~~~-~~~~v~~~Y~~l~~~~--~~~~~~~~~iID~s~~~~eev~~~I~~~v~~~l  202 (214)
T d1tmka_         150 ETVK-FQEKVKQTFMKLLDKE--IRKGDESITIVDVTNKGIQEVEALIWQIVEPVL  202 (214)
T ss_dssp             CCHH-HHHHHHHHHHHHHHHH--HHTTCTTEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHH-HHHHHHHHHHHHHHHh--hhhCCCcEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            2333 333332 333322111  1122346888996 5789999998888776544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=3.9e-17  Score=116.89  Aligned_cols=164  Identities=16%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCC----HHHH---------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVP----SEVT---------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------   85 (209)
                      ++|+|+|++||||||+++.|+++|   |+.++....    . ..+...+..............    ....         
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~----P-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~   75 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF----P-RYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRA   75 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES----S-CTTTCHHHHHHHHHHTTCSTTGGGCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec----C-CCCCccchhhhhhhccccccccccchHHHHHHHHHHHH
Confidence            579999999999999999999988   333322100    0 001111111111111111100    0000         


Q ss_pred             --HHHHHHHHHhcCCCeEEEeCCCCCHH-----------------HHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhc
Q 028388           86 --IKLLQKAMEESGNDKFLIDGFPRNEE-----------------NRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        86 --~~~i~~~~~~~~~~~~i~dg~~~~~~-----------------~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                        ...+....  ..+..+|+|.+..+..                 ....+...  ....||++|||++|++++.+|+.+|
T Consensus        76 ~~~~~~~~~~--~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Pd~~i~L~~~~e~~~~Ri~~R  153 (208)
T d1gsia_          76 GAVHTIQGLC--RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGR  153 (208)
T ss_dssp             TTHHHHHHHH--HHSSEEEEESCHHHHHHHHHHHTTCCTTSHHHHHHHHHHTTTSCCCCCSEEEEECCCHHHHHHHHHHH
T ss_pred             HHHHhHHHHh--hhcccccccchhhhHHHHHhhccchhhhhhhHHHHHHHHHHHhhccCCceeEEecccHHHHHHHHHhh
Confidence              11111111  1378999997653311                 11111111  3568999999999999999999999


Q ss_pred             c---CCCCCC---cHHHHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHH
Q 028388          145 N---QGREDD---NVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAV  196 (209)
Q Consensus       145 ~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i  196 (209)
                      .   .....+   ....+.+++...+...   ... .....+++||++.+++++.++|
T Consensus       154 ~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~---~~~-~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         154 AQRDPGRARDNYERDAELQQRTGAVYAEL---AAQ-GWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             HHHCTTCCCCTTTTCHHHHHHHHHHHHHH---HHH-TTTSEEEEECTTCCHHHHHHHH
T ss_pred             hcccccccccchhhHHHHHHHHHHHHHHH---HHh-cCCCCEEEEeCCCCHHHHHHhh
Confidence            1   111111   1233444433322211   110 1123689999999999999876

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.3e-16  Score=114.27  Aligned_cols=166  Identities=17%  Similarity=0.157  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHc-----CCCCCHHHH-----------
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE-----GKIVPSEVT-----------   85 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------   85 (209)
                      ++|+|+|++||||||+|+.|+ .+|+++++.|.+.+..+..+......+.+.+..     ........+           
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~~   82 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEK   82 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHHH
Confidence            689999999999999999996 789999999999988766555544444443321     111222222           


Q ss_pred             -----------HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHH
Q 028388           86 -----------IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVE  154 (209)
Q Consensus        86 -----------~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~  154 (209)
                                 .+.+...........++++.- ...+.  .    ....++.+|++.||+++..+|+..|  .  ....+
T Consensus        83 ~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~-ll~e~--~----~~~~~~~iI~V~a~~e~r~~R~~~R--~--~~~~~  151 (208)
T d1vhta_          83 NWLNALLHPLIQQETQHQIQQATSPYVLWVVP-LLVEN--S----LYKKANRVLVVDVSPETQLKRTMQR--D--DVTRE  151 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSSEEEEECT-TTTTT--T----GGGGCSEEEEEECCHHHHHHHHHHH--H--TCCHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcCCcceeee-ecccc--c----ccccCCEEEEEeCCHHHHHHHHHHh--h--hhhHH
Confidence                       222222223333456666642 11111  0    2234678999999999999999988  2  23445


Q ss_pred             HHHHHHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCcchh
Q 028388          155 TIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTPKDE  205 (209)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~~~~  205 (209)
                      .+..++....    +...... ..+ ++|+++.+++++..+|.++++....
T Consensus       152 ~~~~~~~~Q~----~~~~k~~-~aD-~vI~N~~~le~l~~~v~~l~~~~l~  196 (208)
T d1vhta_         152 HVEQILAAQA----TREARLA-VAD-DVIDNNGAPDAIASDVARLHAHYLQ  196 (208)
T ss_dssp             HHHHHHHHSC----CHHHHHH-HCS-EEEECSSCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC----CHHHHHH-hCC-EEEECCCCHHHHHHHHHHHHHHHHH
Confidence            5555543321    1122222 233 5677777999998888877665443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.68  E-value=1.3e-16  Score=115.28  Aligned_cols=41  Identities=34%  Similarity=0.512  Sum_probs=38.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEI   60 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~   60 (209)
                      ++.+|.|.|||||||||+|+.|+++||++++|+|+++|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            46789999999999999999999999999999999999764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.68  E-value=2.5e-16  Score=109.52  Aligned_cols=166  Identities=13%  Similarity=0.075  Sum_probs=85.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh-HHHHHHHHcCCchHHHHHHHHHcC-CCC-CH--HHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG-DLLRAEIKSGSENGTMIQNMIKEG-KIV-PS--EVTIKLLQKAME   94 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~~~~~i~~~~~   94 (209)
                      .+++|+|+|+|||||||+|+.|+++++...++.+ +.+....... ............. ... ..  ......+.....
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLK-MQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGG-GGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhcccccc-ccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999997654432 3333321110 0000000000000 000 00  011112222111


Q ss_pred             --hcCCCeEEEeCCC-CCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHH
Q 028388           95 --ESGNDKFLIDGFP-RNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVV  171 (209)
Q Consensus        95 --~~~~~~~i~dg~~-~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (209)
                        ...+..++++... ........+...........|+|+||++++.+|...|  +....  +....    +.+..    
T Consensus        81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R--~~~~~--~~~~~----~~~~~----  148 (178)
T d1qhxa_          81 AMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR--GDRVA--GMAAK----QAYVV----  148 (178)
T ss_dssp             HHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT--SSSCT--THHHH----HTTGG----
T ss_pred             HHHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhc--CCcch--hhhhh----hhhhh----
Confidence              1135666666533 3333333333324455667899999999999999988  32211  11111    11111    


Q ss_pred             HHHhhcCcEEEEcC-CCChHHHHHHHHHhc
Q 028388          172 QYYEAKGKVRKIDA-AKPVAEVFDAVKAVF  200 (209)
Q Consensus       172 ~~~~~~~~~~~id~-~~~~ee~~~~i~~~i  200 (209)
                      .. ..... +.||+ ..+++|+++.|.+.|
T Consensus       149 ~~-~~~~d-l~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         149 HE-GVEYD-VEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             GT-TCCCS-EEEETTSSCHHHHHHHHHTTC
T ss_pred             hc-CCCCC-EEEECCCCCHHHHHHHHHHhc
Confidence            00 11123 45666 569999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.4e-16  Score=115.13  Aligned_cols=41  Identities=29%  Similarity=0.546  Sum_probs=38.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK   61 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~   61 (209)
                      +++|+|.|||||||||+|+.|+++||++++|+|+++|....
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            56999999999999999999999999999999999998643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.3e-16  Score=107.64  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      .|+|+|+|||||||+|+.|+++||+++++.+.....................      .............. .....++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~   76 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEE------GFRDREEKVINELT-EKQGIVL   76 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHH------HHHHHHHHHHHHHH-TSSSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhh------HHHHHHHHHHHhhc-cccceEe
Confidence            5888899999999999999999999999998776655222111111110000      00111111111111 1234444


Q ss_pred             EeCCCCC--HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhc-cC---CCCCCcHHHHHHHHHHHHhhchhHHHHHhh
Q 028388          103 IDGFPRN--EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNR-NQ---GREDDNVETIRKRFKVFLESSLPVVQYYEA  176 (209)
Q Consensus       103 ~dg~~~~--~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (209)
                      .......  ......+..     ....+++.+++.++..|...+ ..   .........+...+...       ...|.+
T Consensus        77 ~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~y~~  144 (169)
T d1kaga_          77 ATGGGSVKSRETRNRLSA-----RGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANER-------NPLYEE  144 (169)
T ss_dssp             ECCTTGGGSHHHHHHHHH-----HSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHH-------HHHHHH
T ss_pred             eccchhhhhhhhhHHhhh-----cceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHh-------hhhhhc
Confidence            4433222  222222222     357999999999999988776 11   11122223322222111       222334


Q ss_pred             cCcEEEEcC-CCChHHHHHHHHHhcC
Q 028388          177 KGKVRKIDA-AKPVAEVFDAVKAVFT  201 (209)
Q Consensus       177 ~~~~~~id~-~~~~ee~~~~i~~~i~  201 (209)
                      ...+ .+|+ +.++++++++|.+.|.
T Consensus       145 ~~d~-~Idt~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         145 IADV-TIRTDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             HCSE-EC-----CHHHHHHHHHHHHC
T ss_pred             cCCE-EEECCCCCHHHHHHHHHHHhC
Confidence            3444 5666 6699999999998763

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.2e-15  Score=108.08  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ....+|++|+|+|+.||||||+++.|+++++...+
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            45678999999999999999999999999976544

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=110.93  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      .|++|+|+|+.||||||+++.|+++|+-..+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            4899999999999999999999999975444

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.61  E-value=1.4e-15  Score=108.49  Aligned_cols=166  Identities=14%  Similarity=0.139  Sum_probs=93.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh----C--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF----G--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l----~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (209)
                      +...++++|+|+|.|||||||+|+.|++++    +  ..+++. |.++..+..+..+....+..          ....+.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg-D~iR~~l~~~l~ys~~~r~~----------~~~r~~   87 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRFGLNKDLGFSEADRNE----------NIRRIA   87 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTTTTTTTCCSSHHHHHH----------HHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc-hHHHHhhcCCCCCChhHHHH----------HHHHHH
Confidence            566789999999999999999999999876    2  234555 55555433222121111110          011111


Q ss_pred             HHH-HHhcCCCeEEEeCCCCCHHHHHHHHHh--------cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHH
Q 028388           90 QKA-MEESGNDKFLIDGFPRNEENRAAFEAV--------TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRF  160 (209)
Q Consensus        90 ~~~-~~~~~~~~~i~dg~~~~~~~~~~~~~~--------~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~  160 (209)
                      .-+ .....+..+|++........+.....+        ....+.+.|||+||.+++.+|..++  .        ..+..
T Consensus        88 ~~a~~~~~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~--~--------y~~~~  157 (208)
T d1m7ga_          88 EVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKG--L--------YKKAR  157 (208)
T ss_dssp             HHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTC--H--------HHHHH
T ss_pred             HHHHHHhccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhccc--c--------hhhhh
Confidence            111 111247888898765555555554442        1334567999999999999997655  0        00000


Q ss_pred             HHHHhhchhHHHHHhhc-CcEEEEcC-CCChHHHHHHHHHhcCc
Q 028388          161 KVFLESSLPVVQYYEAK-GKVRKIDA-AKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~id~-~~~~ee~~~~i~~~i~~  202 (209)
                      .........+...|+.+ ..-+++|+ ..++++.+++|.++|.+
T Consensus       158 ~~~~~~~~gvd~~ye~P~~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         158 EGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             HTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             cCcccceecccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            00001111111112222 22355665 56999999999998855

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.8e-16  Score=113.05  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=52.9

Q ss_pred             CCCcEEEEEecCHHHHHHHHhhccCCCCCC--cHHHHHHHHHHHHhhch-h----HHHHHhhcCcEEEEcCCCChHHHHH
Q 028388          122 IEPEFVLFFDCSEEEMERRILNRNQGREDD--NVETIRKRFKVFLESSL-P----VVQYYEAKGKVRKIDAAKPVAEVFD  194 (209)
Q Consensus       122 ~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~--~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~id~~~~~ee~~~  194 (209)
                      ..||++|||+++++++.+|+.+|  ++..+  ....+.+++...++.+- .    .........++++||++.+.+++.+
T Consensus       151 ~~Pdl~i~Ld~~pe~~~~Ri~~r--~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~  228 (241)
T d1p5zb_         151 LELDGIIYLQATPETCLHRIYLR--GRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYE  228 (241)
T ss_dssp             HCCSEEEEEECCHHHHHHHHHHH--CCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHH
T ss_pred             CCCceeeeeccCHHHHHHHHHhh--cchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHH
Confidence            57999999999999999999988  43221  12233333333222110 0    0001122347899999999999999


Q ss_pred             HHHHhcCcchh
Q 028388          195 AVKAVFTPKDE  205 (209)
Q Consensus       195 ~i~~~i~~~~~  205 (209)
                      +|.+.|+...+
T Consensus       229 ~i~~~i~~~l~  239 (241)
T d1p5zb_         229 SLVEKVKEFLS  239 (241)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99988866543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4e-16  Score=111.99  Aligned_cols=114  Identities=24%  Similarity=0.323  Sum_probs=67.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC----------ceecHhHHHHHHHHcCCchHHHHHHHH-----HcCCCCCHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY----------THLSAGDLLRAEIKSGSENGTMIQNMI-----KEGKIVPSEV   84 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   84 (209)
                      .|.+|.|+|++||||||+|+.|++.++.          .+++.|++++..    .. ........     ........+.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL----TS-EQKAKALKGQFNFDHPDAFDNEL   75 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC----CH-HHHHHHHTTCSCTTSGGGBCHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccccccc----ch-hhhhhhhhcccccCCcHHHHHHH
Confidence            4899999999999999999999999974          346666654210    00 00000000     0111222233


Q ss_pred             HHHHHHHHHHh----------------------cCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHh
Q 028388           85 TIKLLQKAMEE----------------------SGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRIL  142 (209)
Q Consensus        85 ~~~~i~~~~~~----------------------~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~  142 (209)
                      +.+.+......                      .....++++|.+.....  .+..    .+|+.|||++|++++.+|..
T Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiveg~~~l~~~--~l~~----~~D~~i~v~~~~~~~~~R~~  149 (213)
T d1uj2a_          76 ILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD----LFQMKLFVDTDADTRLSRRV  149 (213)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH----HCSEEEEEECCHHHHHHHHH
T ss_pred             HHhhhhhhhcCCcccccccccccccccCceEEecccceEEecchhhhccH--HHHh----hhheeeeecCCHHHHHHHHH
Confidence            34444433321                      12456788886543321  1222    26899999999999999988


Q ss_pred             hc
Q 028388          143 NR  144 (209)
Q Consensus       143 ~r  144 (209)
                      .|
T Consensus       150 ~R  151 (213)
T d1uj2a_         150 LR  151 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            87

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=6.2e-14  Score=97.96  Aligned_cols=163  Identities=18%  Similarity=0.214  Sum_probs=91.7

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCH----------H
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPS----------E   83 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~----------~   83 (209)
                      +.+|+|+||+||||||+++.|.+++.....+.....|.....   +..    ....+......+..+..          .
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g   81 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG   81 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccc
Confidence            468999999999999999999998742222221212211000   000    00222222222222111          1


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHH
Q 028388           84 VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVF  163 (209)
Q Consensus        84 ~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~  163 (209)
                      .....+...+.  .+..+++|..   ..-...+.. ....+..++++.++.+++.+|+.+|  ++  +..+.+.+|+..+
T Consensus        82 ~~~~~~~~~~~--~g~~~i~~~~---~~g~~~l~~-~~~~~~~i~i~~~s~e~L~~RL~~R--g~--~~~e~I~~Rl~~~  151 (182)
T d1znwa1          82 TLAQPVRAAAA--TGVPVLIEVD---LAGARAIKK-TMPEAVTVFLAPPSWQDLQARLIGR--GT--ETADVIQRRLDTA  151 (182)
T ss_dssp             EEHHHHHHHHH--HTCCEEEECC---HHHHHHHHH-HCTTSEEEEEECSCHHHHHHHHHTT--SC--SCHHHHHHHHHHH
T ss_pred             cccchhhhhhh--cCCccccccc---cchhhhhhh-cCcceeEEeeecccHHHHHHHhhhc--Cc--chHHHHHHHHHHH
Confidence            11333444444  3678888854   333344444 4556655666667889999999988  54  4667888887665


Q ss_pred             HhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhc
Q 028388          164 LESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVF  200 (209)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i  200 (209)
                      ....    . +....+.+++| + +++++++++.+.|
T Consensus       152 ~~e~----~-~~~~fD~vI~N-d-dle~a~~~l~~iI  181 (182)
T d1znwa1         152 RIEL----A-AQGDFDKVVVN-R-RLESACAELVSLL  181 (182)
T ss_dssp             HHHH----H-GGGGSSEEEEC-S-SHHHHHHHHHHHH
T ss_pred             HHHH----h-hHhcCCEEEEC-c-CHHHHHHHHHHHh
Confidence            4321    1 12223344444 3 7999999998765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=102.08  Aligned_cols=164  Identities=14%  Similarity=0.115  Sum_probs=76.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcC----Cch-HHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSG----SEN-GTMIQNMIKEGKIVPSEVTIKLLQKAME   94 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~   94 (209)
                      ++++|+|+|+|||||||+|+.|+++++..+++.+.+..+.....    ... ........        ......+.....
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~   89 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFAD   89 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHH--------HHHHHHHHHHHh
Confidence            68899999999999999999999999876665433332221111    000 00000000        001112222222


Q ss_pred             hcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhchhHHH
Q 028388           95 ESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQ  172 (209)
Q Consensus        95 ~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
                        ....++++...........+..+  ........+++.++.....++..++  ..... .......+...       ..
T Consensus        90 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~  157 (195)
T d1x6va3          90 --AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG--LYKKA-RAGEIKGFTGI-------DS  157 (195)
T ss_dssp             --TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC----------------------------------------
T ss_pred             --cCCccccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccch--hhhhh-hhhhhhhhhhh-------cc
Confidence              36777788766555554444443  3334445666777777777776654  11111 11111111000       01


Q ss_pred             HHhhc-CcEEEEcC-CCChHHHHHHHHHhcCcc
Q 028388          173 YYEAK-GKVRKIDA-AKPVAEVFDAVKAVFTPK  203 (209)
Q Consensus       173 ~~~~~-~~~~~id~-~~~~ee~~~~i~~~i~~~  203 (209)
                      .|+.. ...++||+ +.++++++++|.++|++.
T Consensus       158 ~~e~~~~~dl~IdT~~~s~ee~~~~Il~~l~~~  190 (195)
T d1x6va3         158 EYEKPEAPELVLKTDSCDVNDCVQQVVELLQER  190 (195)
T ss_dssp             CCCCCSSCSEEECTTTSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
Confidence            12211 12356776 459999999999988653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=4.6e-14  Score=100.72  Aligned_cols=122  Identities=17%  Similarity=0.251  Sum_probs=70.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC-----ceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHH---HH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY-----THLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQ---KA   92 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~   92 (209)
                      |.+|+++|.|||||||+|+.|++.+++     ..++.| .++..+............................+.   ..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG-QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc-ceehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            789999999999999999999998864     456664 566665543221100000000000000111112222   22


Q ss_pred             HHhcCCCeEEEeCCCCCHHHHHHHHHh--cCCCCcEEEEEecCHHHHHHHHhh
Q 028388           93 MEESGNDKFLIDGFPRNEENRAAFEAV--TKIEPEFVLFFDCSEEEMERRILN  143 (209)
Q Consensus        93 ~~~~~~~~~i~dg~~~~~~~~~~~~~~--~~~~~~~~i~L~~~~~~~~~R~~~  143 (209)
                      +....+..+|+|+..........+..+  ....+.+++.+.|+.+.+.++...
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV  133 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHH
Confidence            333357889999987777777666554  333445677788877777665544

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.41  E-value=1.6e-13  Score=95.26  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=28.8

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      ...++++|+|+|+|||||||+|+.|+++|+..+
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            356789999999999999999999999996443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2.5e-12  Score=91.10  Aligned_cols=165  Identities=16%  Similarity=0.214  Sum_probs=95.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC--ceecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHHHH-----
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY--THLSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSEVT-----   85 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~--~~i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~-----   85 (209)
                      ++++|+|+||+|||||||.+.|.+.+..  ..++.....|...++   +..    ....+.+.+..+.++.....     
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y   80 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY   80 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence            3678999999999999999999988641  111211112211111   100    11334444444433322111     


Q ss_pred             ---HHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHH
Q 028388           86 ---IKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKV  162 (209)
Q Consensus        86 ---~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~  162 (209)
                         ...+...+.  .+..+|+|..   ..-...+.. ....+..++++..+.+++.+|+.+|  +.  +..+.+..++..
T Consensus        81 Gt~~~~v~~~~~--~g~~~ildid---~~g~~~lk~-~~~~~~~ifi~pps~~~l~~RL~~R--g~--~~~~~i~~Rl~~  150 (205)
T d1s96a_          81 GTSREAIEQVLA--TGVDVFLDID---WQGAQQIRQ-KMPHARSIFILPPSKIELDRRLRGR--GQ--DSEEVIAKRMAQ  150 (205)
T ss_dssp             EEEHHHHHHHHT--TTCEEEEECC---HHHHHHHHH-HCTTCEEEEEECSSHHHHHHHHHTT--SC--SCHHHHHHHHHH
T ss_pred             ccccchHHHHHh--cCCceeecCc---HHHHHHHHh-hhcccceeeeeccchHHHHHHHHhc--CC--chHHHHHHHHHH
Confidence               445555555  5889999955   333344444 4455555666677778899999987  43  445566666655


Q ss_pred             HHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcC
Q 028388          163 FLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFT  201 (209)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~  201 (209)
                      .....    .. ....+.+++|.  +++++++++.+.|.
T Consensus       151 a~~E~----~~-~~~fD~vIvNd--dl~~a~~el~~iI~  182 (205)
T d1s96a_         151 AVAEM----SH-YAEYDYLIVND--DFDTALTDLKTIIR  182 (205)
T ss_dssp             HHHHH----TT-GGGSSEEEECS--SHHHHHHHHHHHHH
T ss_pred             HHHHH----HH-HhCCCEEEECc--CHHHHHHHHHHHHH
Confidence            44321    11 12234555654  68999999998885

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=8.2e-13  Score=92.45  Aligned_cols=165  Identities=15%  Similarity=0.272  Sum_probs=90.9

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH--------HHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------VTIK   87 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~~~~   87 (209)
                      |+|+||+|||||||++.|++++.-.+ +......|....+   +..    ....+......+.++...        ....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~   83 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA   83 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchh
Confidence            88999999999999999998874211 1000000000000   000    112222333332222111        1134


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhc
Q 028388           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (209)
                      .+...+.  .+..+|+|..+..   ...+.......+..++++.++.+++.+|+.+|  ++  +..+.+.+|+..+....
T Consensus        84 ~i~~~~~--~g~~~i~~~~~~~---~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~R--g~--~~~~~I~~Rl~~~~~e~  154 (186)
T d1gkya_          84 SVKQVSK--SGKTCILDIDMQG---VKSVKAIPELNARFLFIAPPSVEDLKKRLEGR--GT--ETEESINKRLSAAQAEL  154 (186)
T ss_dssp             HHHHHHH--HTSEEEEECCHHH---HHHHHTCGGGCCEEEEEECSCHHHHHHHHHHH--SC--SCHHHHHHHHHHHHHHH
T ss_pred             hHHHHhc--CCCeEEecchHHH---HHHHHHhhcccceEEEecCCcHHHHHHHHHhh--cc--chhHHHHHHHHHHHHHH
Confidence            4555544  3678999976422   22333212335666888888999999999988  54  45677777776654321


Q ss_pred             hhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          168 LPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       168 ~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                         .......-+.+++|.  +++++++++.+.|.+
T Consensus       155 ---~~~~~~~fd~vI~N~--dle~a~~~l~~iI~~  184 (186)
T d1gkya_         155 ---AYAETGAHDKVIVND--DLDKAYKELKDFIFA  184 (186)
T ss_dssp             ---HHHTTTCSSEEEECS--SHHHHHHHHHHHHHT
T ss_pred             ---HhhhhcCCCEEEECc--CHHHHHHHHHHHHHh
Confidence               111111123445543  799999999988754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=99.38  E-value=2.3e-12  Score=96.94  Aligned_cols=44  Identities=9%  Similarity=0.141  Sum_probs=31.6

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcH-HHHHHHHHHHHh
Q 028388          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDNV-ETIRKRFKVFLE  165 (209)
Q Consensus       120 ~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~-~~~~~~~~~~~~  165 (209)
                      ....||.+|||++|++++.+|+.+|  +|+.+.. ..+.++++..+.
T Consensus       151 ~~~~pdliIyLd~~pe~~l~RI~~R--gR~~E~idl~YL~~L~~~Y~  195 (329)
T d1e2ka_         151 PTLPGTNIVLGALPEDRHIDRLAKR--QRPGERLDLAMLAAIRRVYG  195 (329)
T ss_dssp             CCCTTCEEEEEECCHHHHHHHHHHS--CCTTCCCCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCcCCCCHHHHHHHHHHHH
Confidence            3447899999999999999999999  6665532 244444544333

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.2e-12  Score=91.97  Aligned_cols=168  Identities=17%  Similarity=0.229  Sum_probs=93.0

Q ss_pred             EEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc----hHHHHHHHHHcCCCCCHH--------HHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE----NGTMIQNMIKEGKIVPSE--------VTIK   87 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~--------~~~~   87 (209)
                      |+|+||+|||||||++.|++.++..+ .......|....+   +..    ....+......+..+...        ....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~   82 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKE   82 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccc
Confidence            88999999999999999999886221 1110101100000   000    002222222222222110        1134


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhc
Q 028388           88 LLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (209)
Q Consensus        88 ~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (209)
                      .+...+.  .+..++++..   ..-...+.. ....+..++++..+.+++.+|+.+|  +  .+..+.+.+++..+....
T Consensus        83 ~v~~~~~--~g~~~~~~~~---~~~~~~l~~-~~~~~~~I~i~~~~~e~l~~RL~~R--~--~~~~e~i~~rl~~~~~~~  152 (190)
T d1lvga_          83 AVRAVQA--MNRICVLDVD---LQGVRSIKK-TDLCPIYIFVQPPSLDVLEQRLRLR--N--TETEESLAKRLAAARTDM  152 (190)
T ss_dssp             HHHHHHH--TTCEEEEECC---HHHHHHHTT-SSCCCEEEEEECSCHHHHHHHHHHH--T--CSCHHHHHHHHHHHHHHT
T ss_pred             hhhhhhc--CCCceeecch---Hhhhhhhhh-ccccceEEEEecchHHHHHHHHhhc--c--ccchHHHHHHHHHHHHHH
Confidence            4555555  4678888854   233333444 5556655666666779999999988  4  356677888876654422


Q ss_pred             hhHHHHHhhc--CcEEEEcCCCChHHHHHHHHHhcCcchhhh
Q 028388          168 LPVVQYYEAK--GKVRKIDAAKPVAEVFDAVKAVFTPKDEKA  207 (209)
Q Consensus       168 ~~~~~~~~~~--~~~~~id~~~~~ee~~~~i~~~i~~~~~~~  207 (209)
                      .    .....  -+.+++|.  +++++++++.+.|....+.+
T Consensus       153 ~----~~~~~~~fd~iI~N~--dle~a~~~l~~iI~~~~~k~  188 (190)
T d1lvga_         153 E----SSKEPGLFDLVIIND--DLDKAYATLKQALSEEIKKA  188 (190)
T ss_dssp             T----GGGSTTTCSEEEECS--SHHHHHHHHHHHTHHHHHHT
T ss_pred             H----hhhhcCCCCEEEECc--CHHHHHHHHHHHHHHHHhcc
Confidence            1    11111  23555554  68999999998887655443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.33  E-value=5.2e-13  Score=93.99  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..+++.+|.+|.|+|++||||||+|+.|++.++
T Consensus        15 ~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             HTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HhccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            446677899999999999999999999999886

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=4.8e-12  Score=88.04  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      -++.|+|+|+|||||||+|+.|++++|++++..+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            3578999999999999999999999999988753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=99.29  E-value=2.4e-11  Score=91.70  Aligned_cols=44  Identities=16%  Similarity=0.113  Sum_probs=31.4

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHHHHHHHh
Q 028388          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKRFKVFLE  165 (209)
Q Consensus       120 ~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~~~~~~~  165 (209)
                      ....||.+|||++|++++.+|+.+|  +|+.+. ...+.++++..+.
T Consensus       153 ~~~~pd~iIyLd~~pe~~l~RI~~R--gR~~E~id~~YL~~L~~~Y~  197 (333)
T d1p6xa_         153 REPQGGNIVVTTLNVEEHIRRLRTR--ARIGEQIDITLIATLRNVYF  197 (333)
T ss_dssp             CCCTTEEEEEEECCHHHHHHHHHHH--SCTTCCCCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCcCCCCHHHHHHHHHHHH
Confidence            3346799999999999999999999  666553 2334444544433

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=99.26  E-value=7.3e-11  Score=88.95  Aligned_cols=41  Identities=10%  Similarity=0.035  Sum_probs=25.6

Q ss_pred             cCCCCcEEEEEecCHHHHHHHHhhccCCCCCCc-HHHHHHHHHH
Q 028388          120 TKIEPEFVLFFDCSEEEMERRILNRNQGREDDN-VETIRKRFKV  162 (209)
Q Consensus       120 ~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~-~~~~~~~~~~  162 (209)
                      ....||.+|||++|++++.+|+++|  +|+.+. ...+.++++.
T Consensus       156 ~~~~pdliIyLd~~pe~~l~RIk~R--gR~~E~i~~eYL~~L~~  197 (331)
T d1osna_         156 AEPPGTNLVVCTVSLPSHLSRVSKR--ARPGETVNLPFVMVLRN  197 (331)
T ss_dssp             CCCSCCEEEEEECCHHHHHHHCC--------CCCCHHHHHHHHH
T ss_pred             ccCCCCEEEEEeCCHHHHHHHHHHc--CCCCCCCCHHHHHHHHH
Confidence            3457899999999999999999999  665543 2234444443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.21  E-value=1.8e-11  Score=90.21  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecHhHHHH---HHHHcCCchHHHHHHHHHc-----CCCCCHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSAGDLLR---AEIKSGSENGTMIQNMIKE-----GKIVPSEVT   85 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~   85 (209)
                      .|+++|.|+|++||||||+++.|++.++     ..+++.|++++   ..+..  ............     ......+.+
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~~~--~~~~~~~~~~~~~~~~~P~A~d~dlL   79 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATFSHFSYEANELKEL   79 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTCSTTSGGGBCHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhhhh--hhhhhhhhhccCCCCCCcccccHHHH
Confidence            3567999999999999999999998773     45788888753   11000  000000000000     111223455


Q ss_pred             HHHHHHHHHh--------------------------------cCCCeEEEeCCCCCHH-HHHHHHHhcCCCCcEEEEEec
Q 028388           86 IKLLQKAMEE--------------------------------SGNDKFLIDGFPRNEE-NRAAFEAVTKIEPEFVLFFDC  132 (209)
Q Consensus        86 ~~~i~~~~~~--------------------------------~~~~~~i~dg~~~~~~-~~~~~~~~~~~~~~~~i~L~~  132 (209)
                      .+.+......                                .+...+|++|...... ....+    ....|+.||+++
T Consensus        80 ~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~~~~~~~i----r~~~DlkIfVd~  155 (288)
T d1a7ja_          80 ERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNI----AGLADLKIGVVP  155 (288)
T ss_dssp             HHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBC----GGGCSEEEEEEE
T ss_pred             HHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhccccchhhh----HhhcCeEEEEEC
Confidence            5555544331                                1135778888532210 00011    124789999999


Q ss_pred             CHHHHHHHHhhc---cCCCCCC-cHHHHHHHHHHHHhhchh
Q 028388          133 SEEEMERRILNR---NQGREDD-NVETIRKRFKVFLESSLP  169 (209)
Q Consensus       133 ~~~~~~~R~~~r---~~~~~~~-~~~~~~~~~~~~~~~~~~  169 (209)
                      +.+.++.|...|   ++|+..+ ..+.+.++.-.|.+...|
T Consensus       156 d~dlrliRRI~RD~~eRG~s~E~V~~~i~rrmpdy~~yI~P  196 (288)
T d1a7ja_         156 VINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVP  196 (288)
T ss_dssp             CHHHHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGG
T ss_pred             CCCeEEEeeehhhhhhcCCCHHHHHHHHHhcchHHHHHHHH
Confidence            999998888888   5666544 445666666666666555

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.9e-11  Score=90.25  Aligned_cols=125  Identities=12%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG-------YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLL   89 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   89 (209)
                      ....|.+|.|+|++||||||+|+.|++.+.       ..+++.|+++.....-.   ........+....+..+.+.+.+
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~l~---~~~~~~~~g~Pes~D~~~L~~~L  152 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLK---ERGLMKKKGFPESYDMHRLVKFV  152 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHH---HHTCTTCTTSGGGBCHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchHHH---HhcCCccCCchHhhhHHHHHHHH
Confidence            346789999999999999999999999874       35688888764210000   00000000111223334444444


Q ss_pred             HHHHHhcC------------------------CCeEEEeCCCCCHHHHHHHH---Hh-cCCCCcEEEEEecCHHHHHHHH
Q 028388           90 QKAMEESG------------------------NDKFLIDGFPRNEENRAAFE---AV-TKIEPEFVLFFDCSEEEMERRI  141 (209)
Q Consensus        90 ~~~~~~~~------------------------~~~~i~dg~~~~~~~~~~~~---~~-~~~~~~~~i~L~~~~~~~~~R~  141 (209)
                      ........                        ...+|++|............   .. ...-.|+.||++++.+++.+|.
T Consensus       153 ~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~~Ifvda~~~~~~~r~  232 (308)
T d1sq5a_         153 SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWY  232 (308)
T ss_dssp             HHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHH
T ss_pred             HHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhheeeeecCCHHHHHHHH
Confidence            44332110                        25778888643221110000   00 1113689999999999999998


Q ss_pred             hhc
Q 028388          142 LNR  144 (209)
Q Consensus       142 ~~r  144 (209)
                      ..|
T Consensus       233 i~R  235 (308)
T d1sq5a_         233 INR  235 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            888

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=2.2e-10  Score=84.19  Aligned_cols=122  Identities=14%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcCCchHHHHHHHHHcCC----CCCHHHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGK----IVPSEVTIKLLQ   90 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~   90 (209)
                      ....|..|++.|||||||||+|+.|++.++  +..++.+++....    ...............    ..........+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH----PNFDELVKLYEKDVVKHVTPYSNRMTEAIIS  103 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS----TTHHHHHHHHGGGCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHh----ccCcccchhhhHHHHHHHHhhccchHHHHHH
Confidence            345688999999999999999999999985  5667775543211    111111111000000    000011122222


Q ss_pred             HHHHhcCCCeEEEeCCCCCHHHHHHHHH-hcCC-CCcEEEEEecCHHHHHHHHhhc
Q 028388           91 KAMEESGNDKFLIDGFPRNEENRAAFEA-VTKI-EPEFVLFFDCSEEEMERRILNR  144 (209)
Q Consensus        91 ~~~~~~~~~~~i~dg~~~~~~~~~~~~~-~~~~-~~~~~i~L~~~~~~~~~R~~~r  144 (209)
                      ..+.  .....+.|...........+.. +... ....+.+++++.+....|...|
T Consensus       104 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R  157 (273)
T d1gvnb_         104 RLSD--QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  157 (273)
T ss_dssp             HHHH--HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             HHHh--hCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcC
Confidence            2333  2466777876655544433322 2222 2234777888999998888877

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=1.3e-07  Score=57.75  Aligned_cols=142  Identities=18%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFL  102 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i  102 (209)
                      +|++.||.++=|||+|..|++++.++++....+--.. .               ++       ..+.+.--...+...+|
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfelak-s---------------gn-------eklfehfnkladednvi   58 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAK-S---------------GN-------EKLFEHFNKLADEDNVI   58 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHH-H---------------CH-------HHHHHHHHHHTTCCSEE
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhh-c---------------cC-------HHHHHHHHhhcccccee
Confidence            6899999999999999999999999998754322111 0               11       12222222223568899


Q ss_pred             EeCCCCC---------------HHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHHHHHHHHhhc
Q 028388          103 IDGFPRN---------------EENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESS  167 (209)
Q Consensus       103 ~dg~~~~---------------~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~  167 (209)
                      +|.|..+               ..+...+.. ....-..++||.++|.++.+|+.-|  |...-...++..-+..|++. 
T Consensus        59 idrfvysnlvyakkfkdysilterqlrfied-kikakakvvylhadpsvikkrlrvr--gdeyiegkdidsilelyrev-  134 (164)
T d2axpa1          59 IDRFVYSNLVYAKKFKDYSILTERQLRFIED-KIKAKAKVVYLHADPSVIKKRLRVR--GDEYIEGKDIDSILELYREV-  134 (164)
T ss_dssp             EESCHHHHHHHTTTBSSCCCCCHHHHHHHHH-HHTTTEEEEEEECCHHHHHHHHHHH--TCSSCCSSHHHHHHHHHHHH-
T ss_pred             eehhhhhhhHHHhhcccceehhHHHHHHHHH-HhhhheeEEEEecChHHHHHHhccc--cccccccCCHHHHHHHHHHH-
Confidence            9976322               233334444 3333456999999999999999988  43333223333333334432 


Q ss_pred             hhHHHHHhhcC-cEEEEcCC-CChHHHHHHHH
Q 028388          168 LPVVQYYEAKG-KVRKIDAA-KPVAEVFDAVK  197 (209)
Q Consensus       168 ~~~~~~~~~~~-~~~~id~~-~~~ee~~~~i~  197 (209)
                            ....+ ..+.-|+. -+.+|+...|.
T Consensus       135 ------msnaglhtyswdtgqwssdeiakdii  160 (164)
T d2axpa1         135 ------MSNAGLHTYSWDTGQWSSDEIAKDII  160 (164)
T ss_dssp             ------HHTCSSCEEEEETTTSCHHHHHHHHH
T ss_pred             ------HhcCCceeeecccCCcchHHhhhhee
Confidence                  12233 44556664 37788877665

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.2e-09  Score=74.06  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|+|+||+|||||||++.|.+.+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999999876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.64  E-value=1.2e-08  Score=73.66  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=33.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCceecHhHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE   59 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~~~~~~~   59 (209)
                      .+|+|+|++||||||+|+.|++.+|+.+++.+|.+.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            57999999999999999999999999999965555544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=7.6e-09  Score=76.04  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh--------CCceecHhHHHH
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF--------GYTHLSAGDLLR   57 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l--------~~~~i~~~~~~~   57 (209)
                      -...+|.+|.|.|++||||||++..|.+.+        ...++|.|+++.
T Consensus        22 ~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          22 TGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             TTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             cCCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            345568999999999999999999887665        245679999853

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=1e-07  Score=66.65  Aligned_cols=165  Identities=16%  Similarity=0.211  Sum_probs=85.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce-ecHhHHHHHHHHc---CCc-----hHHHHHHHHHcCCCCCHH---
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH-LSAGDLLRAEIKS---GSE-----NGTMIQNMIKEGKIVPSE---   83 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~-i~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~---   83 (209)
                      +....++.|+|.||   ||+|+.+.|.+.+.-.+ .......|....+   +..     ..+.+...+..+.++...   
T Consensus         4 ~~~~~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~   80 (199)
T d1kjwa2           4 MEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYN   80 (199)
T ss_dssp             EECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEET
T ss_pred             ccCCCCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeec
Confidence            34455667888886   69999999999874211 1111111111000   000     012233333333222111   


Q ss_pred             -----HHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEecCHHHHHHHHhhccCCCCCCcHHHHHH
Q 028388           84 -----VTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRK  158 (209)
Q Consensus        84 -----~~~~~i~~~~~~~~~~~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~~~~~~~~R~~~r~~~~~~~~~~~~~~  158 (209)
                           .....+...+.  .+..+++|..+....   .+.. ....| ++||+.+|.-....|+.+|      ...+.+.+
T Consensus        81 g~~YGt~~~~i~~~~~--~gk~~lldid~~g~~---~lk~-~~~~~-i~IfI~pps~e~l~~l~kr------~~~~~i~~  147 (199)
T d1kjwa2          81 SHLYGTSVQSVREVAE--QGKHCILDVSANAVR---RLQA-AHLHP-IAIFIRPRSLENVLEINKR------ITEEQARK  147 (199)
T ss_dssp             TEEEEEEHHHHHHHHH--TTCEEEECCCTTHHH---HHHH-TTCCC-EEEEECCSSHHHHHHHCTT------SCHHHHHH
T ss_pred             CCccceeeeEEEehhc--CCCcccccccchHHh---hhhh-hccce-eEEeeccccHHHHHhhhcc------ccHHHHHH
Confidence                 11455666655  478999986543333   3333 34444 6899988765555565544      23455555


Q ss_pred             HHHHHHhhchhHHHHHhhcCcEEEEcCCCChHHHHHHHHHhcCc
Q 028388          159 RFKVFLESSLPVVQYYEAKGKVRKIDAAKPVAEVFDAVKAVFTP  202 (209)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ee~~~~i~~~i~~  202 (209)
                      ++......    ...+...-+.+++|.  ++++++++|.+.|..
T Consensus       148 r~~~~~~~----e~~~~~~fd~vI~Nd--dle~a~~~l~~iI~~  185 (199)
T d1kjwa2         148 AFDRATKL----EQEFTECFSAIVEGD--SFEEIYHKVKRVIED  185 (199)
T ss_dssp             HHHHHHHH----HHHHGGGCSEEECCS--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----HHHhhccCCEEEECc--CHHHHHHHHHHHHHH
Confidence            55443222    222333334444443  689999999988755

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=3.2e-08  Score=67.08  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|+|+|+||||||||++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999876

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=8.1e-08  Score=69.71  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ..+.|+-+++.||||+|||++++.||+.++.+++.
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~   75 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT   75 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE
Confidence            34557789999999999999999999999987754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=7.5e-08  Score=69.11  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ++.+++.||||+||||+|+.|++++++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            4568899999999999999999999976643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=9.4e-08  Score=69.05  Aligned_cols=40  Identities=20%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceec--HhHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLS--AGDLLR   57 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~--~~~~~~   57 (209)
                      ...|.-|++.||||+|||++++.|++.++++++.  ..++..
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~   80 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE   80 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            4456779999999999999999999999987754  445543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.38  E-value=1e-07  Score=65.06  Aligned_cols=26  Identities=38%  Similarity=0.650  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      +.|+|+||||||||||++.|+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            35999999999999999999998864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=1.6e-07  Score=67.42  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      ++-+++.||||+||||+|+.+++.+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            4568899999999999999999999876544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=1.8e-07  Score=67.54  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      ..+..+++.||||+||||+++.|++.+++.++
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            44568999999999999999999999986554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.34  E-value=1.8e-07  Score=67.58  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      +.-|++.||||+|||++|+.||+.++++++..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            44699999999999999999999999887654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.4e-07  Score=64.59  Aligned_cols=24  Identities=38%  Similarity=0.517  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999999999988

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.29  E-value=2e-07  Score=69.54  Aligned_cols=31  Identities=16%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      |..|++.||||+|||++|+.||+.++.+++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~   79 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIK   79 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhc
Confidence            4668899999999999999999999865433

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=4.8e-07  Score=65.73  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ..+.|+-|++.||||+|||++++.++..++.+++..
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            344567799999999999999999999999776553

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.23  E-value=5e-07  Score=68.66  Aligned_cols=34  Identities=29%  Similarity=0.270  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ++++.+++.||||+|||++|..|++.+|..+++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            5667999999999999999999999999888764

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=5.3e-07  Score=63.26  Aligned_cols=31  Identities=35%  Similarity=0.710  Sum_probs=27.7

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+.+.+|.+|+++||+||||||.+.+||.++
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567789999999999999999999999877

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=5.2e-07  Score=65.76  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      ...++-|++.||||+|||++++.|+..+|.+++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~   72 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI   72 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEE
Confidence            34566799999999999999999999999876554

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.20  E-value=4.6e-07  Score=61.20  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|.|+|.+|||||||+..|..+|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999887

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.20  E-value=1.3e-06  Score=61.13  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++.+|++.||+||||||.+.+||.++
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356889999999999999999999877

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.16  E-value=4.3e-07  Score=70.85  Aligned_cols=32  Identities=16%  Similarity=0.352  Sum_probs=29.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      |..|++.||+|||||.||+.||+.++.|++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            66899999999999999999999999888663

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.14  E-value=7.9e-07  Score=63.31  Aligned_cols=29  Identities=21%  Similarity=0.301  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..+++.++|.||||+||||+++.|++.++
T Consensus        42 ~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          42 TGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34556789999999999999999999874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.13  E-value=8.6e-07  Score=62.07  Aligned_cols=30  Identities=27%  Similarity=0.554  Sum_probs=22.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++..+|.+|++.||+||||||.+-+||.++
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999999877

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1.3e-06  Score=61.15  Aligned_cols=30  Identities=33%  Similarity=0.567  Sum_probs=26.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+|.+|++.||+||||||.+-+||.++
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            445678999999999999999999999777

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.08  E-value=1.3e-06  Score=63.31  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=25.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..|..++|.||||+||||+++.|++.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999884

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=1.9e-06  Score=60.08  Aligned_cols=28  Identities=36%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+|.+|+++||+||||||.+-+||.++
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999877

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.03  E-value=1.7e-06  Score=61.60  Aligned_cols=31  Identities=19%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+...+...++|.||||+||||+++.+++++
T Consensus        27 ~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          27 TLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            3444555568899999999999999999986

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=8.9e-07  Score=62.76  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      ...+...+++.||||+||||+|+.|++.++..
T Consensus        32 ~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          32 KDGNMPHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             HSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             HcCCCCeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            33444457899999999999999999988643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.99  E-value=4.5e-06  Score=59.56  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +++.+++|.|+|||||||+|..++...
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357799999999999999999998876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.96  E-value=2.6e-06  Score=60.79  Aligned_cols=25  Identities=28%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++|+|+|++|||||||.+.|.+.++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Confidence            4799999999999999999987663

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.4e-06  Score=62.90  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=28.0

Q ss_pred             CCCe-EEEEEcCCCCChhHHHHHHHHHhCCceec
Q 028388           19 KKPT-VVFVLGGPGSGKGTQCANIVEHFGYTHLS   51 (209)
Q Consensus        19 ~~~~-~i~i~G~pgsGKsTla~~L~~~l~~~~i~   51 (209)
                      .+|. .++++||||+|||.+|+.||+.++.+++.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~   82 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR   82 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeE
Confidence            4555 68899999999999999999999866643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.8e-06  Score=62.83  Aligned_cols=28  Identities=25%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+..+|.|+|+||||||||...|...+
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998776

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=3e-06  Score=60.85  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+..++|.||||+||||+++.+++.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34568899999999999999999987

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=2.6e-06  Score=60.37  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=23.5

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.+.+++.||||+||||+++.|+++++
T Consensus        33 ~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          33 GKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             TCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            3444577999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.87  E-value=5.5e-06  Score=61.83  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+..+|.|+|+||||||||...|.+.+
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34567899999999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.85  E-value=2.4e-06  Score=62.23  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +++|.||||+||||+++.+++.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            467789999999999999999873

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00011  Score=50.36  Aligned_cols=30  Identities=17%  Similarity=0.403  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+...+++.|+||+|||++++.||++.
T Consensus        38 L~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            444456678999999999999999999876

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=1.4e-05  Score=50.11  Aligned_cols=29  Identities=7%  Similarity=0.072  Sum_probs=25.7

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +..+++.|+++|.+||||||+|+.|...|
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999998877

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=1.9e-05  Score=52.34  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.1

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      ..+.+|++.|.-||||||+++.+++.+|.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            34568999999999999999999999985

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.1e-05  Score=57.09  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.||+||||||+.+.|+--+
T Consensus        20 sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            3455677899999999999999999997655

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.66  E-value=1.9e-05  Score=56.99  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=26.4

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      ..+.+++|.|++|+||||+++.+++.++..+
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            3567899999999999999999999887543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=9.4e-06  Score=57.93  Aligned_cols=31  Identities=29%  Similarity=0.495  Sum_probs=26.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-.+.|+|++|||||||++.|...+
T Consensus        23 sl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3445677899999999999999999998766

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.64  E-value=1e-05  Score=58.16  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++..++|+|++|||||||++.|...+
T Consensus        36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          36 LKIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            444677899999999999999999998766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.64  E-value=1.1e-05  Score=57.02  Aligned_cols=31  Identities=29%  Similarity=0.300  Sum_probs=26.2

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.|++|||||||.+.|+--+
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            4455678899999999999999999987654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.63  E-value=2.4e-05  Score=54.80  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHh-----CCceecHhHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHF-----GYTHLSAGDLLRAE   59 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l-----~~~~i~~~~~~~~~   59 (209)
                      .++|.|++|||||.|++.+++++     ...+++..++....
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            38899999999999999999887     35677776766554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.63  E-value=1.9e-05  Score=53.34  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      ...-|+|.|++|+||||+|-.|.++ |+.+++-|
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD   45 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADD   45 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecC
Confidence            3466899999999999999999875 88777653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.62  E-value=1.2e-05  Score=57.35  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=26.4

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.|++|||||||++.|...+
T Consensus        22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3455678899999999999999999998655

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.4e-05  Score=57.37  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=26.1

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-+++|+|++|||||||++.|...+
T Consensus        35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          35 FTLRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            445678899999999999999999998766

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=1.5e-05  Score=60.46  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=25.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCCcee
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGYTHL   50 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~~~i   50 (209)
                      |..|++.||+|+|||.+|+.||+.++.+++
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            456999999999999999999999876554

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.2e-05  Score=57.11  Aligned_cols=31  Identities=23%  Similarity=0.237  Sum_probs=26.1

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.|++||||||+++.|+--+
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3455677899999999999999999997644

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.59  E-value=1.4e-05  Score=53.98  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      ...-++|.|++|+||||+|-.|.++ |+.+++-|
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD   46 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDD   46 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence            4566899999999999999999865 77777653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.59  E-value=1.7e-05  Score=58.77  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++++.||||+|||.+|+.|+.+.+
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            456689999999999999999986

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=2.3e-05  Score=54.64  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=23.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      |.-+++.||||+||||+|+.+++.+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            66799999999999999999999884

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.59  E-value=1.5e-05  Score=56.73  Aligned_cols=30  Identities=30%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...++-++.|.||+||||||+++.|+-.+
T Consensus        24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            344567899999999999999999998655

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.58  E-value=1.9e-05  Score=56.08  Aligned_cols=31  Identities=29%  Similarity=0.369  Sum_probs=26.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++...+.-++.|.||+||||||+.+.|.-.+
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            3455677899999999999999999998665

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2.3e-05  Score=55.84  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=24.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      |..++|.||||+||||+|+.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            567899999999999999999998853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.1e-05  Score=54.74  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...++.|.|+|||||||+|..++-+.
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999998654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=1.9e-05  Score=57.62  Aligned_cols=31  Identities=23%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.|++|||||||.+.|+-.+
T Consensus        56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          56 NLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3455678899999999999999999998766

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.57  E-value=2.1e-05  Score=52.78  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=27.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCceecHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSAG   53 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~~   53 (209)
                      ...-++|.|++|+||||++-.|.++ |+.+++-|
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD   46 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKR-GHRLVADD   46 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCC
Confidence            3467999999999999999998876 87777653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.56  E-value=3e-05  Score=51.58  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      |++-..|+|+|.||+|||||.+.+..
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhC
Confidence            44556799999999999999999865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=1.2e-05  Score=55.77  Aligned_cols=30  Identities=33%  Similarity=0.359  Sum_probs=25.7

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++.+++|.||.|||||||.+.|+..+
T Consensus        22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            444567899999999999999999998765

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.51  E-value=1.5e-05  Score=56.20  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.-.++-++.|.||+||||||+.+.|+-.+
T Consensus        20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3455677899999999999999999998755

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.50  E-value=3e-05  Score=57.59  Aligned_cols=28  Identities=21%  Similarity=0.439  Sum_probs=24.6

Q ss_pred             CCCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPT-VVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~-~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.+|. .+++.||+|+|||.+|+.|++.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            35666 68899999999999999999987

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.50  E-value=6.7e-05  Score=52.78  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      +.+.++.|.|+||+|||++|..++
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            467899999999999999997754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.48  E-value=2.5e-05  Score=56.28  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.+.-++.|.|++||||||+++.|+-.+
T Consensus        23 ~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          23 LQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            445677899999999999999999997544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.47  E-value=3.2e-05  Score=54.87  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      -+++|.||+||||||+.+.|+-.+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            367899999999999999998766

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.46  E-value=4.2e-05  Score=50.43  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.||||||||.+.|..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.44  E-value=1.5e-05  Score=56.64  Aligned_cols=30  Identities=23%  Similarity=0.238  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.|++||||||+.+.|+-.+
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            445677899999999999999999998655

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.44  E-value=1.7e-05  Score=56.97  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=25.6

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++.+++|+|++|||||||++.|...+
T Consensus        39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          39 LSIEKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            445677899999999999999999997655

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.40  E-value=2.5e-05  Score=58.51  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-++|.|+||+||||+|+.|+..|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            358999999999999999999876

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=3.3e-05  Score=54.81  Aligned_cols=25  Identities=16%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +..++.|.|+|||||||++..++-.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5679999999999999999988643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=6.4e-05  Score=54.28  Aligned_cols=30  Identities=13%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+...++++|+||+|||++++.|+++.
T Consensus        34 L~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             HTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            444556678899999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=5e-05  Score=54.11  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...+++|.|+|||||||++..++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999987654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.38  E-value=3.1e-05  Score=55.15  Aligned_cols=30  Identities=27%  Similarity=0.452  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-.++-++.|.||+||||||+.+.|+-.+
T Consensus        27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            445677899999999999999999998655

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.38  E-value=7.2e-05  Score=51.32  Aligned_cols=22  Identities=14%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.|+|.|.||||||||.+.|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3599999999999999999973

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.37  E-value=5e-05  Score=51.27  Aligned_cols=25  Identities=28%  Similarity=0.290  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+...|+|.|.||||||||...|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4566799999999999999999854

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.34  E-value=7.1e-05  Score=50.31  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+-+.|+|+|.||||||||...|..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhc
Confidence            4456799999999999999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.34  E-value=6.7e-05  Score=49.95  Aligned_cols=22  Identities=23%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|+||||||||.+.|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            5699999999999999999865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.8e-05  Score=54.48  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC-----CceecH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG-----YTHLSA   52 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~-----~~~i~~   52 (209)
                      ...+..|.|+|||||||+|-.++....     ..|++.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidt   90 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   90 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            557999999999999999999886652     455655

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=4.7e-05  Score=54.10  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.-..+-++.|.||.||||||+.+.|+-.+
T Consensus        23 ~~v~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444667899999999999999999998766

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.33  E-value=7.7e-05  Score=51.12  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=29.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHhCCceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHFGYTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~i~~   52 (209)
                      +|...++|.|||++|||+++..|.+-++..+++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~   84 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF   84 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhCCEEEec
Confidence            5667999999999999999999999998666553

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.2e-05  Score=53.27  Aligned_cols=26  Identities=12%  Similarity=0.140  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +...++.|.|+||||||++|..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            46679999999999999999999854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.33  E-value=4.3e-05  Score=54.93  Aligned_cols=30  Identities=33%  Similarity=0.525  Sum_probs=25.8

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +...++-++.|.||.||||||+++.|+-.+
T Consensus        25 ~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          25 ISVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            445567899999999999999999998665

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.29  E-value=0.00062  Score=46.79  Aligned_cols=28  Identities=11%  Similarity=-0.002  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+.-+++.|+||+||||+|..|++..
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999866

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.26  E-value=0.0001  Score=53.62  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...+|+|.|++|+||||||+.+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.25  E-value=0.00011  Score=49.46  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...|++.|.||||||||.+.|..
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999998853

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=5.9e-05  Score=51.06  Aligned_cols=30  Identities=13%  Similarity=0.201  Sum_probs=24.6

Q ss_pred             ccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           14 ATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        14 ~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..++..+...|+|.|.|++|||||.+.|..
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            344556678899999999999999999854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=4.7e-05  Score=53.90  Aligned_cols=29  Identities=24%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             cccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           15 TVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        15 ~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ++...++-++.|.|+.||||||+.+.|+-
T Consensus        19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          19 SGEVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEEEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            34455788999999999999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00011  Score=48.68  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.|+||||||.+.|..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5689999999999999999974

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=9.2e-05  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .|+|.|+||+|||||...|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999999763

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.22  E-value=6.4e-05  Score=55.92  Aligned_cols=113  Identities=21%  Similarity=0.220  Sum_probs=56.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC--CceecHhHHHHHHHHcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG--YTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGND   99 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (209)
                      ..|+|+|++||||||+.+.|....+  ..++...+...-.+.......    + +......   ....++...++.. ..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~----~-~~~~~~~---~~~~ll~~~lR~~-pd  237 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYT----Q-LFFGGNI---TSADCLKSCLRMR-PD  237 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEE----E-EECBTTB---CHHHHHHHHTTSC-CS
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccc----e-eccccch---hHHHHHHHHhccC-CC
Confidence            3489999999999999999998774  333433221110000000000    0 0000111   1245566666532 34


Q ss_pred             eEEEeCCCCCHHHHHHHHHhcCCCCcEEEEEec-CHHHHHHHHhhc
Q 028388          100 KFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDC-SEEEMERRILNR  144 (209)
Q Consensus       100 ~~i~dg~~~~~~~~~~~~~~~~~~~~~~i~L~~-~~~~~~~R~~~r  144 (209)
                      .+++. -.+..+....++.+...++-.+-=+++ ++..+..|+..-
T Consensus       238 ~iivg-EiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l  282 (323)
T d1g6oa_         238 RIILG-ELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANM  282 (323)
T ss_dssp             EEEES-CCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHHH
T ss_pred             cccCC-ccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence            44444 345555555555543344433333334 567788888754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.0001  Score=50.87  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      +.|+|.|.|+||||||...|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=9.5e-05  Score=49.55  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.||||||||.+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999964

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00014  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.8

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +..-|+|.|.+|+|||||.+.+..
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHh
Confidence            445799999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.17  E-value=0.00014  Score=51.41  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ....+++|.|+||+||||++..++-..
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998655

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00014  Score=48.70  Aligned_cols=26  Identities=23%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      |++..-|+|.|.+|+|||||.+.+..
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34446799999999999999999865

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.16  E-value=0.00023  Score=51.35  Aligned_cols=83  Identities=16%  Similarity=0.267  Sum_probs=49.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecHhHHHHHHHHc--CCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAGDLLRAEIKS--GSENGTMIQNMIKEGKIVPSEVTIKLLQK   91 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   91 (209)
                      +.+.+..|.|++||||||+|..++...   |  ..|++....+...+..  +-...    +.+ -......+...++++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d----~i~-~~~~~~~E~~~~~~~~  129 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTD----ELL-VSQPDNGEQALEIMEL  129 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGG----GCE-EECCSSHHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCch----hEE-EEcCCCHHHHHHHHHH
Confidence            467799999999999999999987655   2  4667654333222111  11110    000 0122234555667766


Q ss_pred             HHHhcCCCeEEEeCC
Q 028388           92 AMEESGNDKFLIDGF  106 (209)
Q Consensus        92 ~~~~~~~~~~i~dg~  106 (209)
                      .+.......+|+|..
T Consensus       130 l~~~~~~~liIiDSi  144 (268)
T d1xp8a1         130 LVRSGAIDVVVVDSV  144 (268)
T ss_dssp             HHTTTCCSEEEEECT
T ss_pred             HHhcCCCcEEEEecc
Confidence            666555778889964

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.0001  Score=49.83  Aligned_cols=20  Identities=20%  Similarity=0.310  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~   43 (209)
                      |+|.|.|++|||||.+.|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00019  Score=52.26  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=25.4

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.|++|+++|.-|+||||++..||..+
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            45668999999999999999988888777

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.0002  Score=48.54  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ....|+|.|.+|+|||||...|...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567999999999999999998753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00015  Score=48.25  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|++.|.||+|||||.+.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.00016  Score=50.00  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|+||||||||.+.|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=51.04  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      -++.+|+|.-||||||+.+.|.+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3689999999999999999987654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.06  E-value=0.00017  Score=48.21  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|++.|.+|||||||.+.|..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00017  Score=48.06  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +...|+|.|.+|+|||||.+.+..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            345689999999999999999864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.04  E-value=0.00015  Score=48.63  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+...|++.|.||||||||.+.+..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            45567799999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.02  E-value=0.00022  Score=54.57  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ..-+|+|+||+||||||....+.+.++
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            345899999999999999999988874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00018  Score=48.81  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.+|+|||||++.|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            489999999999999999874

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.01  E-value=0.0002  Score=47.54  Aligned_cols=21  Identities=29%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|++|||||||.+.|..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999999865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00024  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.||+|||||++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00024  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.+..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3489999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=0.00014  Score=49.40  Aligned_cols=20  Identities=30%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~   43 (209)
                      |.|.|+|+||||||.+.|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999999853

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00021  Score=47.49  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|++.|.+|+|||||.+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.98  E-value=0.00019  Score=48.56  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=22.2

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHH
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      ...+..-|++.|.+|||||||.+.|.
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHh
Confidence            44566789999999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00024  Score=47.30  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..-|++.|.+|+|||||.+.+..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35699999999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.97  E-value=0.00031  Score=50.78  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++.+++|.|+||+||||++..++-.+
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            356799999999999999999988553

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00024  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .|+|.|.||||||||.+.|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00028  Score=46.91  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999864

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00024  Score=47.70  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|.+|+|||||.+.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999854

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00024  Score=47.61  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.+|||||||.+.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999999864

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00026  Score=49.55  Aligned_cols=26  Identities=23%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +....++.|++|+|||||.+.|....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            35678999999999999999996443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00029  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|++.|.+|||||||.+.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00033  Score=46.60  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.|+|.|.+|+|||||.+.+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0003  Score=46.66  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||||.+.+..
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999999874

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00035  Score=50.34  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=26.3

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CceecH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSA   52 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~   52 (209)
                      +.+.+..|.|+|||||||+|..++...   |  ..+|+.
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            356799999999999999998877544   3  355655

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00027  Score=47.47  Aligned_cols=21  Identities=24%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.|++|||||.+.|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999974

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00037  Score=46.50  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|.+|+|||||.+.|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00018  Score=48.54  Aligned_cols=20  Identities=30%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~   43 (209)
                      |.|.|.|+||||||.+.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            88999999999999999964

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00037  Score=46.68  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|++.|.||||||||.+.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00031  Score=48.06  Aligned_cols=21  Identities=19%  Similarity=0.447  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|.+|||||||.+.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            489999999999999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00037  Score=47.14  Aligned_cols=21  Identities=33%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|++.|.+|||||||.+.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00031  Score=47.50  Aligned_cols=23  Identities=17%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ...|+|.|.+|+|||||.+.+.+
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00041  Score=46.05  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|++.|.+|+|||||...|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999875

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00039  Score=52.32  Aligned_cols=22  Identities=36%  Similarity=0.758  Sum_probs=18.1

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      ..+.+|.|+||+||||++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3589999999999999875543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00039  Score=46.22  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||+|.+.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999999865

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00043  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +-|+|.|.+|+|||||++.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999998765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0004  Score=46.25  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +-|+|.|.+|+|||||.+.+..
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhC
Confidence            3589999999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00041  Score=45.89  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.+|+|||||.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00032  Score=46.70  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.|..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4588999999999999999874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00032  Score=46.79  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|++.|.+|+|||||.+.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00029  Score=53.59  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++..+++.|+||+|||++++.|+++.
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            3455567888999999999999999876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0004  Score=46.26  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|++.|.+|+|||+|.+.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.77  E-value=0.00058  Score=49.19  Aligned_cols=31  Identities=16%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      ..++...+++.|||++||||++..|..-+|.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            3356778999999999999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.76  E-value=0.00054  Score=48.08  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++++|+|.|.|.+|||||...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            45679999999999999999987543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00047  Score=46.28  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|++.|.+|+|||||.+.|..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.71  E-value=0.00049  Score=45.83  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999999764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.00013  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      -|+|.|.|++|||||.+.|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00063  Score=49.07  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             ccCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           16 VTVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        16 ~~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +......+|+++|.-|+||||++-.|+..+
T Consensus        15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             HHTTSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            456678899999999999999988888776

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00052  Score=46.05  Aligned_cols=21  Identities=14%  Similarity=0.165  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|.+|+|||||...+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478889999999999998875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.65  E-value=0.00051  Score=49.21  Aligned_cols=25  Identities=24%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+..|+|.|.|||||||+...|..+
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4567999999999999999998643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00059  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.373  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00067  Score=45.33  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||||++.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4589999999999999998864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00031  Score=47.04  Aligned_cols=21  Identities=24%  Similarity=0.417  Sum_probs=9.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|.|.+|||||||.+.|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.58  E-value=0.00057  Score=49.82  Aligned_cols=15  Identities=47%  Similarity=0.700  Sum_probs=12.8

Q ss_pred             EEEEcCCCCChhHHH
Q 028388           24 VFVLGGPGSGKGTQC   38 (209)
Q Consensus        24 i~i~G~pgsGKsTla   38 (209)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            567899999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.00078  Score=48.39  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+.+|.|+||+||||++-.|+-.+
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4588899999999999999988654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00068  Score=45.86  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|+|.|.+|+|||||.+.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            3599999999999999999865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00041  Score=46.30  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||||.+.+..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.48  E-value=0.00077  Score=45.37  Aligned_cols=21  Identities=24%  Similarity=0.248  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|.|.|.|.+|||||...|..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            599999999999999999964

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00084  Score=45.16  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|++.|.+|+|||+|.+.+.+
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.46  E-value=0.00027  Score=49.66  Aligned_cols=27  Identities=22%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ++...++.|++|+|||||.+.|....+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            456678999999999999999965443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.00099  Score=45.33  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCChhHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANI   41 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L   41 (209)
                      .-|+|.|.+|||||||...+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            45899999999999999998

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.001  Score=45.84  Aligned_cols=27  Identities=30%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      ||. .|+|.|-+++|||||+..|....|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            454 499999999999999999965543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.44  E-value=0.00092  Score=49.09  Aligned_cols=16  Identities=31%  Similarity=0.667  Sum_probs=13.2

Q ss_pred             EEEEcCCCCChhHHHH
Q 028388           24 VFVLGGPGSGKGTQCA   39 (209)
Q Consensus        24 i~i~G~pgsGKsTla~   39 (209)
                      ++|.|+|||||||++-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            6678999999997653

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00089  Score=45.50  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||+|...+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999988764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0012  Score=43.86  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|.+|+|||||.+.+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588899999999999999875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.34  E-value=0.0015  Score=41.67  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .-...+|.+|+|||||+++-.+....+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~   34 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGY   34 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            3467899999999999999776666663

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0016  Score=44.85  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             eEEEEEcCC-CCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGP-GSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~p-gsGKsTla~~L~~~l   45 (209)
                      +.++|+|.. |+||||++-.|+..|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            578999995 999999999999877

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.23  E-value=0.0013  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|+|.|.+|||||||.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999853

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0015  Score=43.70  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..|++.|.+|+|||||.+.+..
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4599999999999999998764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0018  Score=45.56  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++++|+||.++||||+.+.++-..
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHH
Confidence            34689999999999999999987533

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0017  Score=49.56  Aligned_cols=23  Identities=30%  Similarity=0.316  Sum_probs=21.1

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .|..|+|.|.||+|||||.+.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999999995

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.08  E-value=0.0019  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHHHHHh
Q 028388           24 VFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      |+|.|.+|+||+++|+.|.+.-
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHHhc
Confidence            7888999999999999997643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.07  E-value=0.0024  Score=46.60  Aligned_cols=26  Identities=23%  Similarity=0.225  Sum_probs=22.5

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+..+-|.|.|.|.||||||-..|..
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            34557799999999999999999985

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.98  E-value=0.0021  Score=43.45  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .-|++.|.+|||||||.+.+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0023  Score=46.62  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +.+-+|+|+.||||||+.++|.=
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45779999999999999998853

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.89  E-value=0.0028  Score=44.25  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .+++|+||.++||||+.+.++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.00037  Score=47.56  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      .+.+|+|+.||||||+..+|.=-+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4678999999999999999976553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.84  E-value=0.0029  Score=45.57  Aligned_cols=26  Identities=19%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .++..|+|.|.|.+|||||...|..+
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45677999999999999999999753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0039  Score=45.04  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +-.++..+.|.|++|+|||||+..++...
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            44688899999999999999999999755

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.77  E-value=0.0039  Score=42.74  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             CCCCe-EEEEEcCCCCChhHHHHHHHH
Q 028388           18 VKKPT-VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        18 ~~~~~-~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ..+|. .|+|.|...+|||||+..|..
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHh
Confidence            45675 599999999999999999953

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.022  Score=39.77  Aligned_cols=32  Identities=16%  Similarity=0.024  Sum_probs=26.9

Q ss_pred             cccccCCCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           13 DATVTVKKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        13 ~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ...+..++|+..+|.|..|||||-++-..+..
T Consensus        68 ~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          68 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             HHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             HHHHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            44567788999999999999999999887654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.75  E-value=0.0023  Score=40.57  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=16.7

Q ss_pred             CCCeEEEEEcCCCCChhHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQC   38 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla   38 (209)
                      .+....+|.+++|||||+.+
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            34678899999999999666

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.71  E-value=0.0051  Score=41.93  Aligned_cols=25  Identities=36%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHH
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      ||. .|+|.|-+.+|||||+..|...
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            454 4999999999999999988653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.61  E-value=0.0038  Score=41.94  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .-|++.|..|||||||.+.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            3589999999999999998864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.60  E-value=0.0042  Score=44.74  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      +-|.|.|.|.||||||-..|..
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHC
Confidence            5699999999999999999984

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.39  E-value=0.023  Score=40.46  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=26.6

Q ss_pred             hcccccCCCCeEEEEEcCCCCChhHHHHHHHH
Q 028388           12 ADATVTVKKPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        12 ~~~~~~~~~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ....+...+|+..++.|..|||||-++-..+.
T Consensus        95 i~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          95 IRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             HHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            34556678899999999999999999887664

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.39  E-value=0.0051  Score=44.26  Aligned_cols=27  Identities=19%  Similarity=0.148  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +-+.|.|.|..|||||||+..|.-.-|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            345799999999999999999976555

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.37  E-value=0.0067  Score=42.04  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=19.2

Q ss_pred             eEEEE-EcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFV-LGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i-~G~pgsGKsTla~~L~~~l   45 (209)
                      ++|.| .|..|+||||++..||..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            34544 4889999999999988777

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0049  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .-++|.|++|||||++...|...+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~   74 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTG   74 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHH
Confidence            458999999999999987665443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.0051  Score=46.62  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .+.+-+|+|+.||||||+..+|.
T Consensus        24 ~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          24 ESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            35577899999999999999985

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.29  E-value=0.0049  Score=41.34  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +|+|+|+..||||.+|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            479999999999999999876543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.23  E-value=0.0073  Score=43.04  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=25.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---C--CceecHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---G--YTHLSAG   53 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~--~~~i~~~   53 (209)
                      +.|+|.|.-|+||||++-.|+-.|   |  ...|+.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            468899999999999999888777   3  3456654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.16  E-value=0.0063  Score=43.56  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.|+|.|..|+|||||+..|.-.-|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4689999999999999999964444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.97  E-value=0.0075  Score=44.22  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|.|.|.|.||||||-+.|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             cEeEECCCCCCHHHHHHHHHC
Confidence            489999999999999999964

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.75  E-value=0.013  Score=40.49  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=19.9

Q ss_pred             eEEEEE-cCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVL-GGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~-G~pgsGKsTla~~L~~~l   45 (209)
                      ++|.|. +..|+||||++..|+..+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHH
Confidence            566666 778999999999998777

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.013  Score=41.89  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.9

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .++..+.|.|++|+|||||+..++...
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            477889999999999999999998763

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.66  E-value=0.006  Score=41.34  Aligned_cols=20  Identities=25%  Similarity=0.273  Sum_probs=16.4

Q ss_pred             EEEEcCCCCChhHHHHHHHH
Q 028388           24 VFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        24 i~i~G~pgsGKsTla~~L~~   43 (209)
                      .++++|+|||||.++-.++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHH
Confidence            56889999999997776664

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0094  Score=42.88  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      .+|.|.|+.+||||||...|....
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            379999999999999999987643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.63  E-value=0.013  Score=42.17  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHh---CC--ceecHh
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHF---GY--THLSAG   53 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l---~~--~~i~~~   53 (209)
                      +.|+|.|.-|+||||++-.|+..|   |.  ..|+.|
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            457889999999999887777655   43  345554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.46  E-value=0.018  Score=39.83  Aligned_cols=28  Identities=29%  Similarity=0.525  Sum_probs=22.7

Q ss_pred             CCe-EEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           20 KPT-VVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        20 ~~~-~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      ||. .|+|.|--++|||||+..|.-..|.
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCC
Confidence            344 4999999999999999998765553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.45  E-value=0.011  Score=39.93  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      .|+|.|.+.+|||||...|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            489999999999999999953

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.10  E-value=0.015  Score=41.04  Aligned_cols=29  Identities=31%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             CCCeE-EEEEcCCCCChhHHHHHHHHHhCC
Q 028388           19 KKPTV-VFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        19 ~~~~~-i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .|+.+ |+|.|-..+|||||+..|.-..|.
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            45565 999999999999999999766654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.08  E-value=0.019  Score=39.80  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .|++.|-..+|||||+..|....|.
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3899999999999999999766663

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.91  E-value=0.025  Score=45.93  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+...|+|.|-+|||||+-++.+.+.|
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998877

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.87  E-value=0.025  Score=46.11  Aligned_cols=28  Identities=14%  Similarity=0.405  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++..|+|.|-+|||||+-++.+.+.|
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999998877

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.035  Score=35.05  Aligned_cols=26  Identities=31%  Similarity=0.399  Sum_probs=21.0

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ++.+-+|+||..|||||-.-..+.++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            46778999999999999776666655

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.67  E-value=0.029  Score=45.72  Aligned_cols=28  Identities=14%  Similarity=0.427  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+...|+|.|-+|||||+-++.+.+.+
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998876

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.50  E-value=0.031  Score=45.67  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++..|+|.|-+|||||+-++.+.+.+
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999998876

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.48  E-value=0.04  Score=37.46  Aligned_cols=26  Identities=15%  Similarity=0.160  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      ..+|.+++|+|||.++-.++.+++..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            45678899999999999999888743

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.44  E-value=0.032  Score=46.03  Aligned_cols=28  Identities=18%  Similarity=0.494  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..++..|+|.|-+|||||+-++.+.+.|
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999988877

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.44  E-value=0.053  Score=34.57  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ...+.+=+|+||..|||||-.-....++
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHh
Confidence            3467888999999999999887777666

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.023  Score=41.18  Aligned_cols=19  Identities=32%  Similarity=0.441  Sum_probs=16.3

Q ss_pred             CeEEEEEcCCCCChhHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCA   39 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~   39 (209)
                      .-+-++.|.+|+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            4567899999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.16  E-value=0.032  Score=40.41  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             CeEEEEEcCCCCChhHHHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCANIV   42 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~   42 (209)
                      .+-|+|+|...|||||+.+.|.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHh
Confidence            3458899999999999999995

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.09  E-value=0.028  Score=40.93  Aligned_cols=20  Identities=35%  Similarity=0.473  Sum_probs=16.6

Q ss_pred             CCeEEEEEcCCCCChhHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCA   39 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~   39 (209)
                      ..-+-++.|.+|+|||||+.
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34566899999999999994

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.08  E-value=0.012  Score=39.91  Aligned_cols=19  Identities=11%  Similarity=0.055  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCCChhHHHHH
Q 028388           22 TVVFVLGGPGSGKGTQCAN   40 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~   40 (209)
                      ..+++.+|+|||||+++..
T Consensus        41 ~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHHHH
Confidence            4578999999999988754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.02  E-value=0.02  Score=41.75  Aligned_cols=20  Identities=30%  Similarity=0.456  Sum_probs=16.9

Q ss_pred             CeEEEEEcCCCCChhHHHHH
Q 028388           21 PTVVFVLGGPGSGKGTQCAN   40 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~   40 (209)
                      .-+-++.|.+|+|||||+.-
T Consensus        14 ~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTCB
T ss_pred             CCEEEEEccCCCCccccccC
Confidence            45779999999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.00  E-value=0.071  Score=31.46  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             cCCCCeEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           17 TVKKPTVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        17 ~~~~~~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      .+.+.+.|.+.|.-|+|-|.||+.|.+ .|+.+
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~V   35 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLN-EGYQI   35 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHH-HTCEE
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHh-CCCEE
Confidence            355678899999999999999999964 56644

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.77  E-value=0.038  Score=45.56  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           18 VKKPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        18 ~~~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      ..+...|+|.|-+|||||.-++.+.+.|
T Consensus       118 ~~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         118 DRENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             HTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999998876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.46  E-value=0.05  Score=38.01  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHHHhCC
Q 028388           23 VVFVLGGPGSGKGTQCANIVEHFGY   47 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~~l~~   47 (209)
                      .|+|.|-..+|||||+..|.-..|.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            6999999999999999999766664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.42  E-value=0.036  Score=40.96  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhC
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFG   46 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~   46 (209)
                      +.|+|.|..++|||||+..|....|
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            4699999999999999999987665

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.15  E-value=0.031  Score=38.86  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=18.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHH
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~   43 (209)
                      ++.-+++.+|+|||||+.+...+-
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             CCCCEEEEecCCChHHHHHHHHHH
Confidence            345688899999999987766553

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=92.15  E-value=0.04  Score=39.50  Aligned_cols=18  Identities=28%  Similarity=0.442  Sum_probs=15.6

Q ss_pred             CCCeEEEEEcCCCCChhH
Q 028388           19 KKPTVVFVLGGPGSGKGT   36 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsT   36 (209)
                      .+...+++.+++|||||+
T Consensus         7 ~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             STTCEEEECCCTTSSTTT
T ss_pred             hcCCcEEEEECCCCCHHH
Confidence            356789999999999996

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.04  E-value=0.063  Score=38.49  Aligned_cols=26  Identities=12%  Similarity=0.277  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...+.|.|++|+|||+++..++..
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHHh
Confidence            46778999999999999999887643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.04  E-value=0.056  Score=38.86  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHH
Q 028388           23 VVFVLGGPGSGKGTQCANIVE   43 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla~~L~~   43 (209)
                      -|+|+|.-.||||||.+.|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHhC
Confidence            477889999999999999963

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.73  E-value=0.063  Score=38.30  Aligned_cols=26  Identities=12%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             CCCeEEEEEcCCCCChhHHHHHHHHH
Q 028388           19 KKPTVVFVLGGPGSGKGTQCANIVEH   44 (209)
Q Consensus        19 ~~~~~i~i~G~pgsGKsTla~~L~~~   44 (209)
                      .+...+.|.|++|+|||+++..+...
T Consensus        65 g~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          65 GRGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             cCCceEeeccCCCCChHHHHHHHHhh
Confidence            46778999999999999999876543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.04  E-value=0.13  Score=32.58  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=17.9

Q ss_pred             CeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           21 PTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        21 ~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +++=+|+||..|||||-.-....++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            3567899999999999444444444

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=86.39  E-value=0.3  Score=33.16  Aligned_cols=24  Identities=25%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHh
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHF   45 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l   45 (209)
                      +.++|.|+|..  ||||.+..|++-|
T Consensus         4 ~~~vI~ITGT~--GKTTt~~~l~~iL   27 (234)
T d1e8ca3           4 NLRLVGVTGTN--GKTTTTQLLAQWS   27 (234)
T ss_dssp             SSEEEEEESSS--CHHHHHHHHHHHH
T ss_pred             CCeEEEEECCC--cHHHHHHHHHHHH
Confidence            45788899887  9999999999877

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=85.87  E-value=0.44  Score=35.85  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=24.4

Q ss_pred             CCeEEEEEcCCCCChhHHHHHHHHHhCCc
Q 028388           20 KPTVVFVLGGPGSGKGTQCANIVEHFGYT   48 (209)
Q Consensus        20 ~~~~i~i~G~pgsGKsTla~~L~~~l~~~   48 (209)
                      +.....|.|.+|||||.++..|.++++-+
T Consensus        30 g~~~q~l~GltGS~ka~~iA~l~~~~~rp   58 (413)
T d1t5la1          30 GVKHQTLLGATGTGKTFTISNVIAQVNKP   58 (413)
T ss_dssp             TCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred             CCCcEEEeCCCCcHHHHHHHHHHHHhCCC
Confidence            34567799999999999999999999743

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.05  E-value=0.29  Score=28.25  Aligned_cols=27  Identities=15%  Similarity=0.131  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCChhHHHHHHHHHhCCce
Q 028388           22 TVVFVLGGPGSGKGTQCANIVEHFGYTH   49 (209)
Q Consensus        22 ~~i~i~G~pgsGKsTla~~L~~~l~~~~   49 (209)
                      +.|.+.|.-|+|-|-||+.|. ..|+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~-~~G~~V   28 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEF-SNGNDV   28 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEE
T ss_pred             cEEEEEeECHHHHHHHHHHHH-hCCCeE
Confidence            468999999999999999985 466633

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.46  Score=35.91  Aligned_cols=16  Identities=19%  Similarity=0.275  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCChhHHH
Q 028388           23 VVFVLGGPGSGKGTQC   38 (209)
Q Consensus        23 ~i~i~G~pgsGKsTla   38 (209)
                      ..+|.+++|||||+..
T Consensus        18 ~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          18 ERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEEcCchHHHHHH
Confidence            4789999999999764