Citrus Sinensis ID: 028394

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccHHHccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccHccccccccEEEcccccccccccHHHHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccHHHHHHEEcc
Coil and Loop (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRhffnddqclqncwvddenysdccqwervecndttgrvikldlrdtrnwESAEWYMnaslftpfqQLESLYLIGNNiagcvenegldtlsrlNNLKFLYLDynhfnnsifsslgglsslrnlsLIGNRLigsidikgkyastlfpcpifcgsyFTEQLEVLIRDLARFLRV
Flexible Loop (DISEMBL)
mcgskrvwVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWErvecndttgrvikldlrdtRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Low Complexity Region (SEG)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFnnsifsslgglsslrnlslignrliGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Disordered region (IsUnstruct)
*****RVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL**
Disordered Region (DISOPRED)
****KRV*VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESA***M**SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Disordered Region (DISEMBL)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Disordered Region (DISPRO)
**GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCGSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.803	0.198	0.345	4e-12
Q05091	330	Polygalacturonase inhibit	N/A	no	0.708	0.448	0.323	3e-11
Q9LRT1	1016	Probably inactive leucine	no	no	0.837	0.172	0.270	6e-10
Q9SH71	587	Putative inactive recepto	no	no	0.660	0.235	0.313	1e-06
C0LGJ1	1106	Probable LRR receptor-lik	no	no	0.722	0.136	0.306	2e-06
Q94AG2	625	Somatic embryogenesis rec	no	no	0.755	0.252	0.320	4e-06
Q9FK10	601	Probable inactive recepto	no	no	0.708	0.246	0.293	1e-05
P93194	1109	Receptor-like protein kin	N/A	no	0.794	0.149	0.274	1e-05
P35334	342	Polygalacturonase inhibit	N/A	no	0.746	0.456	0.257	1e-05
P58823	342	Polygalacturonase inhibit	N/A	no	0.741	0.453	0.259	2e-05

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 90/200 (45%), Gaps = 32/200 (16%)

Query: 1   MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
           M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct: 2   MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query: 53  VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
               N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct: 62  RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query: 112 GNNIAGCVEN--------------------EGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
             N+ G + +                    E   ++  LN L+ L L  N     I SSL
Sbjct: 119 NCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSL 178

Query: 152 GGLSSLRNLSLIGNRLIGSI 171
           G LS L NL L  NRL+G I
Sbjct: 179 GNLSRLVNLELFSNRLVGKI 198

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 28/176 (15%)

Query: 18  VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVI 77
           V+    S+ C   ++  LLQ++  F D   L + W  D   +DCC W  V C+ TT R+ 
Sbjct: 18  VLNPALSDLCNPDDKKVLLQIKKAFGDPYVLAS-WKSD---TDCCDWYCVTCDSTTNRIN 73

Query: 78  KLDL-------------RDTRNWESAEWYMNASLFTPFQQ-------LESLYLIGNNIAG 117
            L +              D    E+ E++   +L  P Q        L+SL L   N++G
Sbjct: 74  SLTIFAGQVSGQIPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSG 133

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI 173
            V     D LS+L NL FL L +N+   +I SSL  L +L  L L  N+L G I I
Sbjct: 134 SVP----DFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPI 185

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 36/211 (17%)

Query: 1   MCGSKRVWVSELIFILL-----VVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDD 55
           M   +R  +S  +F+ L     ++ G      L  +   L+  +   ND       W +D
Sbjct: 1   MGKQRRTMISFTLFLTLTMMSSLINGDTDSIQLNDDVLGLIVFKSDLNDPFSHLESWTED 60

Query: 56  ENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNI 115
           +N    C W  V+CN  T RVI+L L    +  +    +N  +    Q+L+ L L  NN 
Sbjct: 61  DNTP--CSWSYVKCNPKTSRVIELSL----DGLALTGKINRGI-QKLQRLKVLSLSNNNF 113

Query: 116 AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID--- 172
            G +     + LS  N+L+ L L +N+ +  I SSLG ++SL++L L GN   G++    
Sbjct: 114 TGNI-----NALSNNNHLQKLDLSHNNLSGQIPSSLGSITSLQHLDLTGNSFSGTLSDDL 168

Query: 173 ----------------IKGKYASTLFPCPIF 187
                           ++G+  STLF C + 
Sbjct: 169 FNNCSSLRYLSLSHNHLEGQIPSTLFRCSVL 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH71|Y1421_ARATH Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 74/169 (43%), Gaps = 31/169 (18%)

Query: 24  SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ-WERVECNDTTGRVIKLDLR 82
           S   LE ++ ALL     FN  +   N        SD C  W  V CN+   R++ + L 
Sbjct: 18  SSQTLEDDKKALLHFLSSFNSSRLHWN------QSSDVCHSWTGVTCNENGDRIVSVRLP 71

Query: 83  D----------TRNWESAEWYMN----------ASLFTPFQQLESLYLIGNNIAGCVENE 122
                      T +  S+  +++           S FT  + L  LYL  N+++G +   
Sbjct: 72  AVGFNGLIPPFTISRLSSLKFLSLRKNHFTGDFPSDFTNLKSLTHLYLQHNHLSGPL--- 128

Query: 123 GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
            L   S L NLK L L  N FN SI +SL GL+SL+ L+L  N   G I
Sbjct: 129 -LAIFSELKNLKVLDLSNNGFNGSIPTSLSGLTSLQVLNLANNSFSGEI 176

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGJ1|Y1743_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 27  CLEQERYALLQLRHFFND----DQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLR 82
            L+ +R  LL L+ +       ++ L   W   EN    CQW  + C     RV  ++L 
Sbjct: 37  SLDSDREVLLSLKSYLESRNPQNRGLYTEW-KMENQDVVCQWPGIICTPQRSRVTGINLT 95

Query: 83  DTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH 142
           D+    S   + N   F+   +L  L L  N I G +     D LSR +NLK L L +N 
Sbjct: 96  DST--ISGPLFKN---FSALTELTYLDLSRNTIEGEIP----DDLSRCHNLKHLNLSHNI 146

Query: 143 FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEV 198
               +  SL GLS+L  L L  NR+ G  DI+  +       P+FC S     L  
Sbjct: 147 LEGEL--SLPGLSNLEVLDLSLNRITG--DIQSSF-------PLFCNSLVVANLST 191

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 77/178 (43%), Gaps = 20/178 (11%)

Query: 10  SELIFILLVV------KGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ 63
           S ++FILL +        W +   LE +  AL  LR    D   +   W  D    + C 
Sbjct: 4   SYVVFILLSLILLPNHSLWLASANLEGD--ALHTLRVTLVDPNNVLQSW--DPTLVNPCT 59

Query: 64  WERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG 123
           W  V CN+    VI++DL +         ++   L    + L+ L L  NNI G + +  
Sbjct: 60  WFHVTCNNENS-VIRVDLGNAE----LSGHLVPELGV-LKNLQYLELYSNNITGPIPS-- 111

Query: 124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL 181
              L  L NL  L L  N F+  I  SLG LS LR L L  N L GSI +     +TL
Sbjct: 112 --NLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTL 167

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FK10|Y5332_ARATH Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 66/160 (41%), Gaps = 12/160 (7%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECND 71
           LI I+++         ++++++ LLQ  +  N    L   W    + S C +W  V CN 
Sbjct: 7   LILIVVIFNVCIEAETIKEDKHTLLQFVNNINHSHSLN--W--SPSLSICTKWTGVTCNS 62

Query: 72  TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN 131
               V  L L  T         +  S+      L  L L  NNI+G        TL  L 
Sbjct: 63  DHSSVDALHLAAT----GLRGDIELSIIARLSNLRFLILSSNNISGTFPT----TLQALK 114

Query: 132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
           NL  L LD+N F+  + S L     L+ L L  NR  GSI
Sbjct: 115 NLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSI 154

Arabidopsis thaliana (taxid: 3702)

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 27/193 (13%)

Query: 6   RVWVSELIFILLVVKGWWSEGCLEQERYALLQL-RHFFNDDQCLQNCWVDDENYSDCCQW 64
           +V V+  +  L      ++   L  +  ALL L RH+ +    +   W  + + S  C W
Sbjct: 2   KVAVNTFLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSW--NASDSTPCSW 59

Query: 65  ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTP----FQQLESLYLIGNNIAGCVE 120
             VEC+       +    DT N  S   Y  +  F P     + L+ + L GN   G + 
Sbjct: 60  LGVECD-------RRQFVDTLNLSS---YGISGEFGPEISHLKHLKKVVLSGNGFFGSIP 109

Query: 121 NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180
           ++    L   + L+ + L  N F  +I  +LG L +LRNLSL  N LI      G +  +
Sbjct: 110 SQ----LGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLI------GPFPES 159

Query: 181 LFPCPIFCGSYFT 193
           L   P     YFT
Sbjct: 160 LLSIPHLETVYFT 172

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P35334|PGIP1_PHAVU Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 34/190 (17%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WER 66
           +S ++ IL+ ++   SE C  Q++ ALLQ++    +   L + W+     +DCC   W  
Sbjct: 14  LSIILVILVSLRTALSELCNPQDKQALLQIKKDLGNPTTLSS-WLPT---TDCCNRTWLG 69

Query: 67  VECN-DT-TGRVIKLDLRD---TRNWESAEWYMN-------------------ASLFTPF 102
           V C+ DT T RV  LDL      + +       N                          
Sbjct: 70  VLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 129

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            QL  LY+   N++G +     D LS++  L  L   YN  + ++  S+  L +L  ++ 
Sbjct: 130 TQLHYLYITHTNVSGAIP----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLGGITF 185

Query: 163 IGNRLIGSID 172
            GNR+ G+I 
Sbjct: 186 DGNRISGAIP 195

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi. Substrate preference is polygalacturonase (PG) from A.niger >> PG of F.oxysporum, A.solani or B.cinerea. Not active on PG from F.moniliforme.

Phaseolus vulgaris (taxid: 3885)

>sp|P58823|PGIP3_PHAVU Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 34/189 (17%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WER 66
           +S ++ IL+ ++   SE C  Q++ ALLQ++    +   L + W+     +DCC   W  
Sbjct: 14  LSIILVILVSLRTALSELCNPQDKQALLQIKKDLGNPTTLSS-WLPT---TDCCNRTWLG 69

Query: 67  VECN-DT-TGRVIKLDLRD---TRNWESAEWYMN-------------------ASLFTPF 102
           V C+ DT T RV  LDL      + +       N                          
Sbjct: 70  VLCDTDTQTYRVNNLDLSGHNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 129

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            QL  LY+   N++G +     D LS++  L  L   YN  + ++  S+  L +L  ++ 
Sbjct: 130 TQLHYLYITHTNVSGAIP----DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 185

Query: 163 IGNRLIGSI 171
            GNR+ G+I
Sbjct: 186 DGNRISGAI 194

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Phaseolus vulgaris (taxid: 3885)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
224120284	929	predicted protein [Populus trichocarpa]	0.770	0.173	0.509	3e-39
224144186	973	predicted protein [Populus trichocarpa]	0.779	0.167	0.488	2e-33
224145105	280	predicted protein [Populus trichocarpa]	0.794	0.592	0.491	3e-33
224142721	926	predicted protein [Populus trichocarpa]	0.803	0.181	0.485	2e-32
224070712	174	predicted protein [Populus trichocarpa]	0.775	0.931	0.478	2e-32
224107431	173	predicted protein [Populus trichocarpa]	0.770	0.930	0.475	3e-32
224112233	976	leucine rich repeat family protein with	0.789	0.169	0.476	7e-32
224142723	923	predicted protein [Populus trichocarpa]	0.779	0.176	0.475	8e-32
224073949	280	predicted protein [Populus trichocarpa]	0.789	0.589	0.482	8e-31
224142499	436	predicted protein [Populus trichocarpa]	0.808	0.387	0.468	3e-30

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 117/165 (70%), Gaps = 4/165 (2%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECN 70
           +I ++++++GW   GCLE+ER ALLQ++  F+  +    + W  D N   CC+W++V+CN
Sbjct: 13  IINVVVLIQGWRCHGCLEEERVALLQIKDAFSYPNGSFPHSWGRDAN---CCEWKQVQCN 69

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
            TT RV+K+DL  +R WE  +W +NASLF PF +L +L L GN IAGC+ENEG + LS L
Sbjct: 70  STTLRVVKIDLSFSRGWELGDWLLNASLFLPFPELNALNLYGNRIAGCLENEGFERLSVL 129

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
            NL+ L L  N FN+SIFSSLGGLSSL+NLSL  N + G+I ++G
Sbjct: 130 GNLEILELGQNKFNSSIFSSLGGLSSLKNLSLHNNEIEGTISVEG 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 110/168 (65%), Gaps = 5/168 (2%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWLPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV  LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   
Sbjct: 64  IVCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGSE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174
           L +L+NL+ LYL YN F+N+I S + GL SL++L L  NRL G ID+K
Sbjct: 124 LQKLSNLEILYLGYNSFDNTILSFVEGLPSLKSLYLNYNRLEGLIDLK 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145105|ref|XP_002336200.1| predicted protein [Populus trichocarpa] gi|222832534|gb|EEE71011.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/169 (49%), Positives = 108/169 (63%), Gaps = 3/169 (1%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERV 67
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +      W+  +  + CC WE +
Sbjct: 7   VFTVLVITVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWIKAD--AHCCDWESI 64

Query: 68  ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL 127
            CN +TGRV +LDL   RN E  +WY+NASLF PFQQL +L L GN IAG VEN+G   L
Sbjct: 65  GCNSSTGRVTELDLWSVRNEELGDWYLNASLFLPFQQLNALSLYGNRIAGWVENKGGYEL 124

Query: 128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176
            +L+NL+ L L YN FNNSI S + GL SL++L L  NRL G ID+KG 
Sbjct: 125 QKLSNLEILDLGYNSFNNSILSFVEGLPSLKSLYLDYNRLEGLIDLKGP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 111/173 (64%), Gaps = 5/173 (2%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWVPLGCLEEERIALLHLKDALNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV +L L  TRN E  +WY+NASLF PFQQL  LYL GN IAG VE +G   
Sbjct: 64  IVCNSSTGRVTELYLGSTRNEELGDWYLNASLFLPFQQLNILYLWGNRIAGWVEKKGGYE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179
           L +L+NL+ L L+ N FNNSI S + GL SL++L L  NRL GSID+K    S
Sbjct: 124 LQKLSNLEILDLESNSFNNSILSFVEGLPSLKSLYLDYNRLEGSIDLKESLTS 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070712|ref|XP_002303209.1| predicted protein [Populus trichocarpa] gi|222840641|gb|EEE78188.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQ-NCWVDDENYSDCCQWERVECN 70
           L+ +++ ++GW   GCL++ER ALLQL+   N         W+  + +  CC WER+EC+
Sbjct: 12  LVIMMVSLQGWLPLGCLDEERIALLQLKDSLNHPNGTSLPSWIKADAH--CCSWERIECS 69

Query: 71  DTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL 130
             TGRV +L L +TRN E  +WY+N SLF PFQQL +L L GN IAG VE +G   L RL
Sbjct: 70  SRTGRVTELYLEETRNEEMGDWYLNTSLFLPFQQLNALSLWGNRIAGWVEKKGGYELQRL 129

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
            NL +L L  N F+NSI S + G  SL++L L  NRL G ID+KG
Sbjct: 130 RNLDYLDLGSNSFDNSILSFVEGFPSLKSLYLYYNRLEGLIDLKG 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107431|ref|XP_002333512.1| predicted protein [Populus trichocarpa] gi|222837050|gb|EEE75429.1| predicted protein [Populus trichocarpa]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 5/166 (3%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECND 71
           ++ ++++     S+GCLE+ER ALLQ++   N        W  D   + CC WE V C++
Sbjct: 10  VVVVMMINAMLLSQGCLEEERIALLQIKTSLNLTSSPLLSWGKD---ALCCSWEGVTCSN 66

Query: 72  --TTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
             TT RV+++ L  TR+W   +WY+NAS+F PFQ+L+ L L  N IA CV NEG + LSR
Sbjct: 67  STTTRRVVEIHLYYTRDWSMGDWYLNASIFLPFQELKVLDLGANRIACCVANEGFERLSR 126

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
           L  L+ LYL  N+FNNSI SS+ GLSSL+ L+L  N+L GSID KG
Sbjct: 127 LAKLEVLYLSLNNFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTKG 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 109/170 (64%), Gaps = 5/170 (2%)

Query: 12  LIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWERVEC 69
           L+ +++ ++GW   GCLE+ER ALL L+   N  +   L +  +    ++ CC WE + C
Sbjct: 5   LVILMVSLQGWVPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HAHCCDWESIVC 61

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N +TGRV  LDL   RN +  +WY+NASLF PFQQL  LYL  N IAG VEN+G   L +
Sbjct: 62  NSSTGRVTVLDLWGVRNEDLGDWYLNASLFLPFQQLNVLYLWNNRIAGWVENKGGSELQK 121

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179
           L+NL+ LYL+ N FNNSI S + GL SL++L L  NRL G ID+K   +S
Sbjct: 122 LSNLESLYLEDNSFNNSILSFVEGLPSLKSLYLSYNRLEGLIDLKESLSS 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142723|ref|XP_002324704.1| predicted protein [Populus trichocarpa] gi|222866138|gb|EEF03269.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 105/166 (63%), Gaps = 3/166 (1%)

Query: 16  LLVVKGWWSEGCLEQERYALLQLRHFFN-DDQCLQNCWVDDENYSDCCQWERVECNDTTG 74
           ++ ++GW   GCLE+ER ALL L+   N  +      W+  +  + CC WE + C+ +TG
Sbjct: 1   MVSLQGWLPLGCLEEERIALLHLKDALNYPNGTSLPSWIKGD--AHCCDWESIICDSSTG 58

Query: 75  RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134
           RV +LDL   R+ E  +WY+NASLF PFQQL  LYL  N IAG VE +G    SRL+NL+
Sbjct: 59  RVTELDLEGVRDRELGDWYLNASLFLPFQQLNGLYLTANRIAGLVEKKGGYEQSRLSNLE 118

Query: 135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST 180
           +L L  N F+NSI S +  LSSL++L L  NRL G ID+KG Y  T
Sbjct: 119 YLDLGINGFDNSILSYVERLSSLKSLYLNYNRLEGLIDLKGGYELT 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073949|ref|XP_002335892.1| predicted protein [Populus trichocarpa] gi|222836248|gb|EEE74669.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 108/170 (63%), Gaps = 5/170 (2%)

Query: 9   VSELIFILLVVKGWWSEGCLEQERYALLQLRHFFN--DDQCLQNCWVDDENYSDCCQWER 66
           V  ++ I + ++GW   GCLE+ER ALL L+   N  +   L +  +    +++CC WER
Sbjct: 7   VLTVLVITVSLQGWLPLGCLEEERIALLHLKDSLNYPNGTSLPSWRIA---HANCCDWER 63

Query: 67  VECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT 126
           + CN +TGRV  LDL   RN E  +WY+NASLF PFQQL  L L  N IAG VEN+G   
Sbjct: 64  IVCNSSTGRVTLLDLLGVRNEELGDWYLNASLFLPFQQLNILDLWHNRIAGWVENKGGYE 123

Query: 127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK 176
           L +L+NL+ L L+YN FNNSI S +  L SL++L L  NRL G ID+KG 
Sbjct: 124 LQKLSNLEILDLEYNSFNNSILSFVERLPSLKSLYLDYNRLEGLIDLKGP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142499|ref|XP_002324594.1| predicted protein [Populus trichocarpa] gi|222866028|gb|EEF03159.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 8/177 (4%)

Query: 3   GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFF----NDDQCLQNCWVDDENY 58
           G  R  +  +  ++++     S+GCLE+ER ALLQ++  F    ND       W  D   
Sbjct: 2   GLNRFSLPAVAVMVMINAMLLSQGCLEEERIALLQIKTSFGDHPNDIASPLFSWGKD--- 58

Query: 59  SDCCQWERVEC-NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG 117
           + CC W+RV C N TT RVI+++L  TR+    + Y+NAS+F PFQ+L  L L GN IAG
Sbjct: 59  ALCCSWKRVTCSNSTTRRVIEINLYFTRDRSMEDLYLNASIFLPFQELNVLDLSGNGIAG 118

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174
           CV NEG + LSRL  L+ L L  N+FNNSI SS+ GLSSL+ L+L  N+L GSID K
Sbjct: 119 CVANEGFERLSRLAKLEVLLLSDNYFNNSILSSMKGLSSLKYLNLDFNQLQGSIDTK 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.636	0.136	0.364	2.8e-17
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.693	0.155	0.343	6.7e-14
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.545	0.125	0.370	1.1e-13
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.636	0.137	0.296	3.3e-11
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.526	0.116	0.335	1.3e-09
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.622	0.179	0.326	1.9e-09
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.650	0.160	0.342	2.3e-09
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.483	0.128	0.379	4.4e-09
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.497	0.119	0.350	4.6e-08
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.382	0.112	0.344	1.9e-05

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 55/151 (36%), Positives = 87/151 (57%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLRHFF---NDDQCLQNC---WVDDE 56
             G   +WV   + +L+ ++G+  + C+E+ER ALL+L+ +      D  L +    W +D 
Sbjct:     8 GQNLIWV---MLLLVQLRGY--KCCIEKERKALLELKKYMISKTADWGLDSVLPTWTNDT 62

Query:    57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG---N 113
               S+CC+WE ++CN T+GR+I+L +  T   ES+   +N SL  PF++L SL L G   N
Sbjct:    63 K-SNCCRWEGLKCNQTSGRIIELSIGQTNFKESS--LLNLSLLHPFEELRSLNLSGEIYN 119

Query:   114 NIAGCVEN-EGLDTLSRLNNLKFLYLDYNHF 143
                G  ++ EG ++L RL NL+ L L  N F
Sbjct:   120 EFNGLFDDVEGYESLRRLRNLEILDLSSNSF 150

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.7e-14, P = 6.7e-14
 Identities = 55/160 (34%), Positives = 77/160 (48%)

Query:    27 CLEQERYALLQLRHFFND-------DQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKL 79
             C+E+ER ALL+L+ +          D  L   W +D   SDCCQW+ ++CN T+GRVI+L
Sbjct:    13 CIEKEREALLELKKYLMSRSRESGLDYVLPT-WTNDTK-SDCCQWDGIKCNRTSGRVIEL 70

Query:    80 DLRDTRNWESAEWYMNASLFTPFQQLESLYLI--G-NNIAGCVEN-EGLDTLSRLNNLKF 135
              + D    ES+   +N SL  PF+++ SL L   G N   G  ++ EG  +LS L NLK 
Sbjct:    71 SVGDMYFKESSP--LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSGLRNLKI 128

Query:   136 LYLDYNHFXXXXXXXXXXXXXXXXXXXXXXXXXGSIDIKG 175
             + L  N+F                         G   IKG
Sbjct:   129 MDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKG 168

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 46/124 (37%), Positives = 70/124 (56%)

Query:    27 CLEQERYALLQLRHFFND--DQCLQNC----WVDDENYSDCCQWERVECNDTTGRVIKLD 80
             C+E+ER ALL+L+ F     ++C  +     W +D   SDCCQWE ++CN T+ R+  L 
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTK-SDCCQWENIKCNRTSRRLTGLS 71

Query:    81 LRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVEN-EGLDTLSRLNNLKFLYLD 139
             L  +   E +   +N SL  PF+++ SL L  + + G V++ EG  +L RL NL+ L   
Sbjct:    72 LYTSYYLEIS--LLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFS 129

Query:   140 YNHF 143
              N F
Sbjct:   130 SNEF 133

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 43/145 (29%), Positives = 77/145 (53%)

Query:     3 GSKRVWVSELIFILLVVKGWWSEGCLEQERYALLQLR-HFFN--DDQCLQNCWVDDENYS 59
             G   +WV   + ++  + G+ S  C+++E+ AL +LR H  +  + + +   W +D   S
Sbjct:     8 GHNLIWV---MLLMGQLHGYKS--CIDEEKIALFELRKHMISRTESESVLPTWTNDTT-S 61

Query:    60 DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCV 119
             DCC+W+ V CN  +GRV ++        +++   +N SL  PF+ + SL L  +  +G  
Sbjct:    62 DCCRWKGVACNRVSGRVTEISFGGLSLKDNS--LLNLSLLHPFEDVRSLNLSSSRCSGLF 119

Query:   120 EN-EGLDTLSRLNNLKFLYLDYNHF 143
             ++ EG  +L +L  L+ L L  N F
Sbjct:   120 DDVEGYKSLRKLRKLEILDLASNKF 144

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 44/131 (33%), Positives = 70/131 (53%)

Query:    27 CLEQERYALLQLRHFF------NDDQCLQN-CWVDDE-------NYSDCCQWERVECNDT 72
             CL ++R ALL+L++ F      ++D C +N   V          N SDCC WE + C+  
Sbjct:    38 CLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGITCDTK 97

Query:    73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN 132
             +G VI+LDL  + +W    ++ N+SLF   Q L  L L  N++ G + +    ++  L++
Sbjct:    98 SGEVIELDL--SCSWLYGSFHSNSSLFR-LQNLRVLDLTQNDLDGEIPS----SIGNLSH 150

Query:   133 LKFLYLDYNHF 143
             L  L+L YN F
Sbjct:   151 LTSLHLSYNQF 161

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 47/144 (32%), Positives = 70/144 (48%)

Query:     2 CGSKR----VWVSELIFILL-VVKGWWSEGCLEQERYALLQLRHFF--NDDQCLQNCWVD 54
             C  +R    +W   LIF L   +     + CL  +R ALL+ ++ F   +      C   
Sbjct:     4 CSERRMMTVIWSLCLIFCLSNSILAIAKDLCLPDQRDALLEFKNEFYVQEFDPHMKCEKA 63

Query:    55 DE---NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
              E   N +DCC W RV C+  TG+V++LDL  +    +     N+SLF   Q L+SL L 
Sbjct:    64 TETWRNKTDCCSWNRVSCDPKTGKVVELDLMSS--CLNGPLRSNSSLFR-LQHLQSLELS 120

Query:   112 GNNIAGCVENEGLDTLSRLNNLKF 135
              NNI+G +  + +  L  L +L F
Sbjct:   121 SNNISGILP-DSIGNLKYLRSLSF 143

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 52/152 (34%), Positives = 74/152 (48%)

Query:     1 MCGSKRVWVSE---LIFILLVVKGWWSEG---CLEQERYALLQLRHFF--NDDQCLQNCW 52
             M  S R WV     +IF+ L+V    S     C + +R ALL+ R  F  N    + N W
Sbjct:     2 MIRSHRHWVFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQW 61

Query:    53 VDDENYS-DCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
                 N S DCC W  V CND +G+VI LD+ +T  + +     N+SLF   Q L  L L 
Sbjct:    62 RGPWNKSTDCCLWNGVTCNDKSGQVISLDIPNT--FLNNYLKTNSSLFK-LQYLRHLDLT 118

Query:   112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF 143
               N+ G + +    +L  L++L  + L +N F
Sbjct:   119 NCNLYGEIPS----SLGNLSHLTLVNLYFNKF 146

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 41/108 (37%), Positives = 56/108 (51%)

Query:    27 CLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRN 86
             C   +R  LL+ R  F   +   + W      +DCC W+ V C+D +G+VI LDLR T  
Sbjct:    32 CRHDQRDGLLKFRDEFPIFESKSSPW---NKTTDCCSWDGVTCDDKSGQVISLDLRSTLL 88

Query:    87 WESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK 134
               S +   N+SLF   Q L  L L G N+ G + +  L  LSRL NL+
Sbjct:    89 NSSLK--TNSSLFR-LQYLRHLDLSGCNLHGEIPSS-LGNLSRLENLE 132

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 4.6e-08, P = 4.6e-08
 Identities = 41/117 (35%), Positives = 60/117 (51%)

Query:    27 CLEQERYALLQLRHFFNDDQ-CLQNCWVDDE---NYSDCCQWERVECNDTTGRVIKLDLR 82
             C  ++R ALL+L+  F   + C        E   N SDCC W+ + CND +G V++LDL 
Sbjct:    39 CRLEQRDALLELKKEFKIKKPCFDGLHPTTESWANNSDCCYWDGITCNDKSGEVLELDL- 97

Query:    83 DTRNWESAEWYMNASLFTPFQQ--LESLYLIGNNIAG----CVEN-EGLDTLSRLNN 132
              +R+   + ++ N+SLFT      L +L L  N  +G    C+EN   L TL    N
Sbjct:    98 -SRSCLQSRFHSNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIENFSHLTTLDLSKN 153

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 30/87 (34%), Positives = 49/87 (56%)

Query:    57 NYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA 116
             N SDCC WE V CN  +G VI+LDL  + ++    ++ N+S+      L +L L  N+  
Sbjct:    78 NNSDCCNWEGVTCNAKSGEVIELDL--SCSYLHGRFHSNSSIRN-LHFLTTLDLSFNDFK 134

Query:   117 GCVENEGLDTLSRLNNLKFLYLDYNHF 143
             G +    + ++  L++L +L L +NHF
Sbjct:   135 GQI----MSSIENLSHLTYLDLSFNHF 157

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01520050 hypothetical protein (929 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)

Query: 64  WERVEC--NDTTGRVI----KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG 117
           W   +C  + T G+       LD +  R +   +        +  + L+S+ L GN+I G
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-------SKLRHLQSINLSGNSIRG 456

Query: 118 CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
            +      +L  + +L+ L L YN FN SI  SLG L+SLR L+L GN L G +
Sbjct: 457 NIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
           T    LE L L  N + G +  E    L ++ +LK++YL YN+ +  I   +GGL+SL +
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 160 LSLIGNRLIGSI 171
           L L+ N L G I
Sbjct: 241 LDLVYNNLTGPI 252

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           + L+ +YL  NN++G +  E    +  L +L  L L YN+    I SSLG L +L+ L L
Sbjct: 212 KSLKWIYLGYNNLSGEIPYE----IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 163 IGNRLIGSI 171
             N+L G I
Sbjct: 268 YQNKLSGPI 276

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 24/102 (23%)

Query: 70  NDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR 129
           N+  GR+      ++R W+                L+ L L  N   G     GL     
Sbjct: 438 NNLQGRI------NSRKWD-------------MPSLQMLSLARNKFFG-----GLPDSFG 473

Query: 130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
              L+ L L  N F+ ++   LG LS L  L L  N+L G I
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.002
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L+SL L  N +   + +        L NLK L L  N+  +    +  GL SLR+L L 
Sbjct: 1   NLKSLDLSNNRLTV-IPDG---AFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLS 56

Query: 164 GNRL 167
           GN L
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)

Query: 28 LEQERYALLQLRHFFNDD--QCLQNCWVDDENYSDCCQWERVECN 70
          L  +R ALL  +   N D    L + W  + + SD C W  V C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSS-W--NPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
PLN03150	623	hypothetical protein; Provisional	99.83
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
PLN03150	623	hypothetical protein; Provisional	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.16
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.01
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.67
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.67
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.64
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.61
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.44
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.43
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.38
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.24
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.24
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.72
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.1
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.65
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.96
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.85
PRK15386	426	type III secretion protein GogB; Provisional	94.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.05
smart00370	26	LRR Leucine-rich repeats, outliers.	93.77
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.77
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.45
smart00370	26	LRR Leucine-rich repeats, outliers.	93.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.76
PRK15386	426	type III secretion protein GogB; Provisional	92.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	88.99
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.07
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.87
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	81.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	80.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=1.6e-23  Score=199.35  Aligned_cols=171  Identities=22%  Similarity=0.348  Sum_probs=125.2

Q ss_pred             cHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCCCcccccccCCccccCCCCCCE
Q 028394           28 LEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLES  107 (209)
Q Consensus        28 ~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~  107 (209)
                      .++|++||++||+++.+|...+.+|+.   ..+||.|.||+|+. .++|+.|+|+++++....     +..+..+++|+.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKI-----SSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccC-----ChHHhCCCCCCE
Confidence            558999999999999877777889964   67899999999986 579999999998765221     122334444444


Q ss_pred             EEccCceeccccCCCcch-------------------hcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394          108 LYLIGNNIAGCVENEGLD-------------------TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       108 L~Ls~N~l~g~ip~~~~~-------------------~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      |+|++|.++|.+|...+.                   ..+.+++|++|+|++|++++.+|..++++++|++|++++|.++
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            444444444444433000                   0234667777777777777788888888888888888888888


Q ss_pred             cccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhhh
Q 028394          169 GSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFLR  208 (209)
Q Consensus       169 G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~~  208 (209)
                      +.+|..++++++|.. ..+.+|.+++.+|..++.++++.+
T Consensus       178 ~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        178 GKIPNSLTNLTSLEF-LTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             ccCChhhhhCcCCCe-eeccCCCCcCcCChHHcCcCCccE
Confidence            888888888888775 777888888888888887776643

>PLN03150 hypothetical protein; Provisional

Probab=99.83  E-value=2.4e-20  Score=170.19  Aligned_cols=143  Identities=29%  Similarity=0.348  Sum_probs=118.0

Q ss_pred             CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCC--C--CcEEEEEcCCCCCCcccccccCCcccc
Q 028394           25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDT--T--GRVIKLDLRDTRNWESAEWYMNASLFT  100 (209)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~--~--~~v~~L~L~~~~l~~~~~~~~~~~~~~  100 (209)
                      ..+.+.|.+||+++|+.+..+.  ..+|.++++....|.|.||.|...  .  .+|+.|+|+++.+..  .+   +..+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g--~i---p~~i~  439 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRG--FI---PNDIS  439 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccc--cC---CHHHh
Confidence            4566789999999999986543  247954222222237999999531  1  259999999998862  21   44588


Q ss_pred             CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      .+++|+.|+|++|.++|.+|..    ++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|..++.+
T Consensus       440 ~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             CCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence            8999999999999999999998    9999999999999999999999999999999999999999999999988764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=2.6e-14  Score=136.57  Aligned_cols=103  Identities=27%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      ++.+++|++|++++|.+.+.+|..    ++++++|++|++++|++++.+|..++++++|++|+|++|+++|.+|..++++
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            455666666666666666666655    5556666666666666655555555555555555555555555555555555


Q ss_pred             CCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          179 STLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++|.. ..+.+|.+++.+|..+++++++
T Consensus       236 ~~L~~-L~L~~n~l~~~~p~~l~~l~~L  262 (968)
T PLN00113        236 TSLNH-LDLVYNNLTGPIPSSLGNLKNL  262 (968)
T ss_pred             CCCCE-EECcCceeccccChhHhCCCCC
Confidence            55543 4444555555555555444433

>PLN03150 hypothetical protein; Provisional

Probab=99.41  E-value=1.6e-13  Score=125.49  Aligned_cols=95  Identities=24%  Similarity=0.286  Sum_probs=90.0

Q ss_pred             CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP  183 (209)
Q Consensus       104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~  183 (209)
                      .++.|+|++|.++|.+|..    ++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.+++++.+|..
T Consensus       419 ~v~~L~L~~n~L~g~ip~~----i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND----ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCccccCCHH----HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            4788999999999999998    999999999999999999999999999999999999999999999999999999886


Q ss_pred             CCccCCCCCchhhHHHHHHH
Q 028394          184 CPIFCGSYFTEQLEVLIRDL  203 (209)
Q Consensus       184 ~~~~~~n~~~~~~p~~~~~L  203 (209)
                       ..+.+|.++|.+|..++.+
T Consensus       495 -L~Ls~N~l~g~iP~~l~~~  513 (623)
T PLN03150        495 -LNLNGNSLSGRVPAALGGR  513 (623)
T ss_pred             -EECcCCcccccCChHHhhc
Confidence             8899999999999998764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.16  E-value=8.6e-13  Score=100.83  Aligned_cols=95  Identities=23%  Similarity=0.292  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      ..++|.|.|++|.++.++      +.+..+.+|+.|++++|.+. .+|..    ++.+++|+.|+++-|++. .+|..||
T Consensus        32 ~s~ITrLtLSHNKl~~vp------pnia~l~nlevln~~nnqie-~lp~~----issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVP------PNIAELKNLEVLNLSNNQIE-ELPTS----ISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCceeecC------CcHHHhhhhhhhhcccchhh-hcChh----hhhchhhhheecchhhhh-cCccccC
Confidence            357888888888876432      23555666666666666665 56665    666666666666666665 5566666


Q ss_pred             CCCCCCEEeccCCccc-cccCCCCcccC
Q 028394          153 GLSSLRNLSLIGNRLI-GSIDIKGKYAS  179 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~-G~iP~~~~~l~  179 (209)
                      .++.|+.|||.+|+++ ..+|..+.+++
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~  127 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMT  127 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHH
Confidence            6666666666666554 23344333333

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.12  E-value=2.4e-11  Score=103.29  Aligned_cols=112  Identities=23%  Similarity=0.231  Sum_probs=94.1

Q ss_pred             cEEEEEcCCCCCCcccc------------------cccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEE
Q 028394           75 RVIKLDLRDTRNWESAE------------------WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFL  136 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~------------------~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L  136 (209)
                      -|+.++++.|++.+++.                  +.+.+..+..+++|..|+|++|.+. .+|.+    ++.+..|+.|
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e----~~~lv~Lq~L  463 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE----MGSLVRLQTL  463 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh----hhhhhhhhee
Confidence            48999999998754432                  1344566788999999999999998 79998    9999999999


Q ss_pred             ecccCCCC----------------------Ccchhh-hcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          137 YLDYNHFN----------------------NSIFSS-LGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       137 ~Ls~N~l~----------------------g~iP~~-l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      |++.|+|.                      |.+|+. +++|.+|+.|||.+|.+. .||+.+|+++++.. ..+.+|+|+
T Consensus       464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h-LeL~gNpfr  541 (565)
T KOG0472|consen  464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH-LELDGNPFR  541 (565)
T ss_pred             cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE-EEecCCccC
Confidence            99999886                      233433 778899999999999998 89999999999986 889999999

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=1.5e-10  Score=74.13  Aligned_cols=61  Identities=33%  Similarity=0.417  Sum_probs=52.2

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL  167 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l  167 (209)
                      ++|++|++++|+++ .+|+.   .|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999998 55643   278899999999999999977777899999999999999975

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.01  E-value=1.7e-11  Score=93.74  Aligned_cols=120  Identities=20%  Similarity=0.179  Sum_probs=79.5

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~  152 (209)
                      .++..|++.+|+++.++      ..+++++.|+.|+++-|++. .+|..    |+.++.|+.|||.+|+++. .+|..|.
T Consensus        56 ~nlevln~~nnqie~lp------~~issl~klr~lnvgmnrl~-~lprg----fgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIEELP------TSISSLPKLRILNVGMNRLN-ILPRG----FGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             hhhhhhhcccchhhhcC------hhhhhchhhhheecchhhhh-cCccc----cCCCchhhhhhccccccccccCCcchh
Confidence            35667888888877553      34667778888888888776 66776    7888888888888777754 4666666


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      .++.|+-|+|++|.|. -+|..++++++|.- ..+-.|.+ =.+|+.+++|.++.
T Consensus       125 ~m~tlralyl~dndfe-~lp~dvg~lt~lqi-l~lrdndl-l~lpkeig~lt~lr  176 (264)
T KOG0617|consen  125 YMTTLRALYLGDNDFE-ILPPDVGKLTNLQI-LSLRDNDL-LSLPKEIGDLTRLR  176 (264)
T ss_pred             HHHHHHHHHhcCCCcc-cCChhhhhhcceeE-EeeccCch-hhCcHHHHHHHHHH
Confidence            6666777777777776 56777777766542 22223322 24566666666553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.95  E-value=1.2e-09  Score=65.07  Aligned_cols=40  Identities=35%  Similarity=0.721  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhCC-CCCCCCCCCCCCCC-CCCCccccceEEc
Q 028394           29 EQERYALLQLRHFFN-DDQCLQNCWVDDEN-YSDCCQWERVECN   70 (209)
Q Consensus        29 ~~~~~aL~~~~~~~~-~~~~~l~~W~~~~~-~~~~C~W~gv~C~   70 (209)
                      ++|++||++||.++. ++...+.+|+.  . ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence            579999999999998 46678999964  2 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=5.4e-09  Score=80.96  Aligned_cols=103  Identities=27%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh-c
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL-G  152 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l-~  152 (209)
                      +.+.|+|.++.++.+..       ++ .+.+|+.|++++|.++ .++.     +..++.|++|++++|+++ .+++.+ .
T Consensus        20 ~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~-~l~~-----l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQIT-KLEG-----LPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ----------------S---------TT-TT--EEE-TTS--S---TT---------TT--EEE--SS----S-CHHHHH
T ss_pred             ccccccccccccccccc-------hhhhhcCCCEEECCCCCCc-cccC-----ccChhhhhhcccCCCCCC-ccccchHH
Confidence            57889999999876543       33 4788999999999998 4553     788999999999999998 454444 4


Q ss_pred             CCCCCCEEeccCCccccccCCCCc---ccCCCCCCCccCCCCCch
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGK---YASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~---~l~~l~~~~~~~~n~~~~  194 (209)
                      .+++|++|++++|++.. + .++.   .+.+|.. ..+.+|++..
T Consensus        86 ~lp~L~~L~L~~N~I~~-l-~~l~~L~~l~~L~~-L~L~~NPv~~  127 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISD-L-NELEPLSSLPKLRV-LSLEGNPVCE  127 (175)
T ss_dssp             H-TT--EEE-TTS---S-C-CCCGGGGG-TT--E-EE-TT-GGGG
T ss_pred             hCCcCCEEECcCCcCCC-h-HHhHHHHcCCCcce-eeccCCcccc
Confidence            68999999999999974 2 2233   3444443 5667777764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.68  E-value=3.1e-09  Score=95.21  Aligned_cols=105  Identities=20%  Similarity=0.217  Sum_probs=53.7

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc-ccccCCCCc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL-IGSIDIKGK  176 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l-~G~iP~~~~  176 (209)
                      .+.+|+.|-+||||+|++. .+|+.    +..+..|++|+|++|.+.-.--..+..+++|++|.+++.+= .-.||.++-
T Consensus       145 lfinLtDLLfLDLS~NrLe-~LPPQ----~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld  219 (1255)
T KOG0444|consen  145 LFINLTDLLFLDLSNNRLE-MLPPQ----IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD  219 (1255)
T ss_pred             HHHhhHhHhhhccccchhh-hcCHH----HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence            3444555555555555554 34444    45555555555555544321111222334444444443321 234677776


Q ss_pred             ccCCCCCCCccCCCCCchhhHHHHHHHHhhhhC
Q 028394          177 YASTLFPCPIFCGSYFTEQLEVLIRDLARFLRV  209 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~~~  209 (209)
                      .+.+|-. .+++.|++. .+|+++-+|.++.|+
T Consensus       220 ~l~NL~d-vDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  220 DLHNLRD-VDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             hhhhhhh-ccccccCCC-cchHHHhhhhhhhee
Confidence            6666653 566666554 577777777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=2.9e-08  Score=63.38  Aligned_cols=60  Identities=30%  Similarity=0.442  Sum_probs=51.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF  143 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l  143 (209)
                      +++.|++++|.+..++     ...|..+++|++|++++|.++..-|..    |..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~-----~~~f~~l~~L~~L~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIP-----PDSFSNLPNLETLDLSNNNLTSIPPDA----FSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEEC-----TTTTTTGTTESEEEETSSSESEEETTT----TTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccC-----HHHHcCCCCCCEeEccCCccCccCHHH----HcCCCCCCEEeCcCCcC
Confidence            5789999999888554     467889999999999999998655555    89999999999999985

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.67  E-value=3.5e-09  Score=94.86  Aligned_cols=123  Identities=23%  Similarity=0.182  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|||+.|.+.+.+      ..+..-+++-+|+||+|++. +||..   -+-+++.|-.||||+|++. .+|+.+..+
T Consensus       104 dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie-tIPn~---lfinLtDLLfLDLS~NrLe-~LPPQ~RRL  172 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE-TIPNS---LFINLTDLLFLDLSNNRLE-MLPPQIRRL  172 (1255)
T ss_pred             cceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc-cCCch---HHHhhHhHhhhccccchhh-hcCHHHHHH
Confidence            4566666666665432      23444556666666666665 56654   2455666666777777766 566666666


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc-hhhHHHHHHHHhhhhC
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT-EQLEVLIRDLARFLRV  209 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~-~~~p~~~~~L~~~~~~  209 (209)
                      ..|++|+|++|.+.-.--..+-.+++|.. ...++.+.+ ..+|.++..|.++-+|
T Consensus       173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v-Lhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSV-LHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             hhhhhhhcCCChhhHHHHhcCccchhhhh-hhcccccchhhcCCCchhhhhhhhhc
Confidence            66777777766654221122222333332 334444444 5678788777777654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.67  E-value=2.6e-08  Score=92.79  Aligned_cols=117  Identities=19%  Similarity=0.155  Sum_probs=82.4

Q ss_pred             cEEEEEcCCCCCCccccc-------ccCCccccC----CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCC
Q 028394           75 RVIKLDLRDTRNWESAEW-------YMNASLFTP----FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF  143 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~-------~~~~~~~~~----l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l  143 (209)
                      .++.|+|++|.+..++..       .+....+..    ..+|+.|++++|.+++ +|..    .   ++|+.|++++|++
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l----~---s~L~~LdLS~N~L  414 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL----P---SELKELMVSGNRL  414 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CCCc----c---cCCCEEEccCCcC
Confidence            577888888887755431       000001111    2367788888888873 5643    2   5688888888888


Q ss_pred             CCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       144 ~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      + .+|...   .+|+.|++++|+++ .||..++++.++.. ..+++|++++.++..+.++..
T Consensus       415 s-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~-LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        415 T-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             C-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe-EECCCCCCCchHHHHHHHHhc
Confidence            7 467543   46788899999998 79999998888874 888999999999888866543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.65  E-value=1.1e-08  Score=87.35  Aligned_cols=93  Identities=24%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc--------------------chhcCCCCCC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG--------------------LDTLSRLNNL  133 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~l~~L  133 (209)
                      .+++.|+|++|-+.++      |..++.+..|+.|++|.|+|. .+|.-.                    +.++.+|.+|
T Consensus       435 ~kLt~L~L~NN~Ln~L------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLNDL------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             hcceeeecccchhhhc------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            3567777777766544      335677888999999999886 455421                    3458899999


Q ss_pred             cEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394          134 KFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus       134 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      .+|||.+|.+. .+|+.+|+|++|++|++++|.|+  .|....
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~i  547 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQI  547 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHHHH
Confidence            99999999998 89999999999999999999998  676443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.64  E-value=2.4e-08  Score=88.82  Aligned_cols=78  Identities=22%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             CCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          128 SRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       128 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ..|.++++|+|+.|+++..--.++-++++|+.|+|++|.++.--++.+....+|.. ..+++|.++.--++.+..|.++
T Consensus       266 y~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~-LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  266 YGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE-LDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             eeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee-EeccccccccCChhHHHHHHHh
Confidence            33455556666666665444445556666666666666666666666666666553 6666666665555555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.61  E-value=3.2e-07  Score=85.70  Aligned_cols=42  Identities=7%  Similarity=-0.042  Sum_probs=31.1

Q ss_pred             hhccCCCCcHHHHHHHHHHHhhCCCCCCCCC----CCCCCCCCCCCcccc
Q 028394           20 KGWWSEGCLEQERYALLQLRHFFNDDQCLQN----CWVDDENYSDCCQWE   65 (209)
Q Consensus        20 ~~~~~~~~~~~~~~aL~~~~~~~~~~~~~l~----~W~~~~~~~~~C~W~   65 (209)
                      .++..++..++|...++++.+.+..|. ...    .|.+   ..++|.-.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~---~~~fc~~~   98 (754)
T PRK15370         53 LCHPPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGG---ADQYCILS   98 (754)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCC---CCcccccC
Confidence            344567888999999999999998775 333    4876   67788543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.53  E-value=7.8e-08  Score=74.51  Aligned_cols=84  Identities=30%  Similarity=0.408  Sum_probs=40.8

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcc-hhhh
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSI-FSSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~i-P~~l  151 (209)
                      .+++.|+|++|.+..+..       +..+++|+.|++++|.++ .+++.    + ..+++|++|++++|++...- =..+
T Consensus        42 ~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~-~i~~~----l~~~lp~L~~L~L~~N~I~~l~~l~~L  109 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRIS-SISEG----LDKNLPNLQELYLSNNKISDLNELEPL  109 (175)
T ss_dssp             TT--EEE-TTS--S--TT-----------TT--EEE--SS----S-CHH----HHHH-TT--EEE-TTS---SCCCCGGG
T ss_pred             cCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCC-ccccc----hHHhCCcCCEEECcCCcCCChHHhHHH
Confidence            478999999999986643       667999999999999998 45433    4 36899999999999997421 1457


Q ss_pred             cCCCCCCEEeccCCcccc
Q 028394          152 GGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~G  169 (209)
                      ..+++|++|+|.+|.++.
T Consensus       110 ~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen  110 SSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             GG-TT--EEE-TT-GGGG
T ss_pred             HcCCCcceeeccCCcccc
Confidence            789999999999999973

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=1.4e-07  Score=56.28  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=26.1

Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      ++|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35777777777777 56666777777777777777776

...

>PLN03210 Resistant to P

Probab=98.46  E-value=2.5e-07  Score=90.45  Aligned_cols=110  Identities=16%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|++.++.+..+.      ..+..+++|+.|+|+++..-+.+|.     ++.+++|++|+|++|.....+|..++++
T Consensus       612 ~L~~L~L~~s~l~~L~------~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLW------DGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCcEEECcCccccccc------cccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhcc
Confidence            3445555555444321      2345678888888887765557774     7788888888888887767888888888


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      ++|+.|++++|..-+.+|..+ ++++|.. ..+.+|...+.+|
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~-L~Lsgc~~L~~~p  721 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-NLKSLYR-LNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-CCCCCCE-EeCCCCCCccccc
Confidence            888888888876666788765 4555543 3344443333333

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.44  E-value=1.1e-07  Score=88.65  Aligned_cols=69  Identities=23%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      ++|+.|++++|.+++ +|..    .   .+|+.|++++|+++ .+|..++++++|+.|+|++|+|+|.+|..+.++++
T Consensus       402 s~L~~LdLS~N~Lss-IP~l----~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPML----P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             cCCCEEEccCCcCCC-CCcc----h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            579999999999984 7764    3   46788999999998 89999999999999999999999999887755543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.43  E-value=6.4e-08  Score=86.15  Aligned_cols=93  Identities=23%  Similarity=0.186  Sum_probs=68.3

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      ..|..+.+++.|+|..|+++..-...    +.+|++|+.||||+|.+...-++.|...++|++|+|++|+++.-=|..+.
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn~g~----lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~  338 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVNEGW----LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR  338 (873)
T ss_pred             cceeeecccceeecccchhhhhhccc----ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence            34666778888888888887332222    77888899999999998888888888888999999999998844444555


Q ss_pred             ccCCCCCCCccCCCCCch
Q 028394          177 YASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~  194 (209)
                      -++.|.. ..++.|.+.-
T Consensus       339 ~L~~Le~-LnLs~Nsi~~  355 (873)
T KOG4194|consen  339 VLSQLEE-LNLSHNSIDH  355 (873)
T ss_pred             HHHHhhh-hcccccchHH
Confidence            5666654 6666666653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.38  E-value=9.7e-08  Score=79.86  Aligned_cols=68  Identities=28%  Similarity=0.292  Sum_probs=29.5

Q ss_pred             CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCcccc
Q 028394          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      +++|++|++++|.+++......+..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            445555555555554311000000133344555555555555432    22233444555555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.37  E-value=4.7e-08  Score=90.61  Aligned_cols=104  Identities=24%  Similarity=0.222  Sum_probs=78.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|++.+++     .+.+.++..|+.|+||+|+++ .+|..    +.++..|++|...+|++. ..| .+..
T Consensus       383 ~hLKVLhLsyNrL~~fp-----as~~~kle~LeeL~LSGNkL~-~Lp~t----va~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFP-----ASKLRKLEELEELNLSGNKLT-TLPDT----VANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             cceeeeeecccccccCC-----HHHHhchHHhHHHhcccchhh-hhhHH----HHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            58889999999887543     456788899999999999998 78877    888888888888888887 777 6788


Q ss_pred             CCCCCEEeccCCccc-cccCCCCcccCCCCCCCccCCCC
Q 028394          154 LSSLRNLSLIGNRLI-GSIDIKGKYASTLFPCPIFCGSY  191 (209)
Q Consensus       154 l~~L~~L~L~~N~l~-G~iP~~~~~l~~l~~~~~~~~n~  191 (209)
                      +++|+.+|++.|+++ +.+|...- ..+|.+ ++++||.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p-~p~Lky-LdlSGN~  487 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALP-SPNLKY-LDLSGNT  487 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCC-Ccccce-eeccCCc
Confidence            888888898888886 33333221 144443 5566664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.34  E-value=2.3e-07  Score=77.57  Aligned_cols=91  Identities=22%  Similarity=0.163  Sum_probs=49.7

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc----cCCC
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS----IDIK  174 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~----iP~~  174 (209)
                      ++|+.|++++|.+++..+......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+++.    ++..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            5666666666666643222111124555667777777777764    2333445556777777777776533    2333


Q ss_pred             CcccCCCCCCCccCCCCCch
Q 028394          175 GKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       175 ~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +.++.+|.. ..+++|.+++
T Consensus       217 ~~~~~~L~~-L~ls~n~l~~  235 (319)
T cd00116         217 LASLKSLEV-LNLGDNNLTD  235 (319)
T ss_pred             hcccCCCCE-EecCCCcCch
Confidence            344444543 5566666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.29  E-value=1.8e-06  Score=80.78  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|+|++|.++.++.     . +  .++|+.|++++|+|+ .+|..    +.  ..|+.|+|++|+++ .+|..+.  
T Consensus       200 ~L~~L~Ls~N~LtsLP~-----~-l--~~nL~~L~Ls~N~Lt-sLP~~----l~--~~L~~L~Ls~N~L~-~LP~~l~--  261 (754)
T PRK15370        200 QITTLILDNNELKSLPE-----N-L--QGNIKTLYANSNQLT-SIPAT----LP--DTIQEMELSINRIT-ELPERLP--  261 (754)
T ss_pred             CCcEEEecCCCCCcCCh-----h-h--ccCCCEEECCCCccc-cCChh----hh--ccccEEECcCCccC-cCChhHh--
Confidence            45566666666554322     1 1  236677777777776 45544    32  35666666666665 5555543  


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      ++|+.|++++|+++ .+|..+.  .+|. ...+++|.++
T Consensus       262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~-~L~Ls~N~Lt  296 (754)
T PRK15370        262 SALQSLDLFHNKIS-CLPENLP--EELR-YLSVYDNSIR  296 (754)
T ss_pred             CCCCEEECcCCccC-ccccccC--CCCc-EEECCCCccc
Confidence            35666666666666 4565443  1232 2344455554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.26  E-value=5.1e-07  Score=78.27  Aligned_cols=116  Identities=26%  Similarity=0.310  Sum_probs=81.5

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .++.+++.++.+..+.+      ....+. +|+.|++++|.+. .+|..    +..++.|+.|++++|+++ .+|...+.
T Consensus       117 ~l~~L~l~~n~i~~i~~------~~~~~~~nL~~L~l~~N~i~-~l~~~----~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIPP------LIGLLKSNLKELDLSDNKIE-SLPSP----LRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCcc------ccccchhhcccccccccchh-hhhhh----hhccccccccccCCchhh-hhhhhhhh
Confidence            57777888877765543      233443 8899999999987 66655    888999999999999998 77777778


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      ++.|+.|++++|+++ .||..++....+.. ..+.+|. .-+++..++++++
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~-l~~~~N~-~~~~~~~~~~~~~  233 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPPEIELLSALEE-LDLSNNS-IIELLSSLSNLKN  233 (394)
T ss_pred             hhhhhheeccCCccc-cCchhhhhhhhhhh-hhhcCCc-ceecchhhhhccc
Confidence            888999999999998 78887655555553 4444443 2333444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=9.4e-07  Score=52.68  Aligned_cols=40  Identities=40%  Similarity=0.435  Sum_probs=33.3

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcch
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF  148 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP  148 (209)
                      ++|++|++++|+++ .+|+.    +++|++|++|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~----l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPE----LSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGH----GTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCch----HhCCCCCCEEEecCCCCC-CCc
Confidence            47899999999999 68877    999999999999999998 444

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.24  E-value=1.5e-07  Score=87.43  Aligned_cols=118  Identities=22%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      ++.+||+++|.+...+      ..+..+.+|+.|+++.|.+. ..|.+    .+++.+|+++.|..|++. .+|.++..+
T Consensus        46 ~L~~l~lsnn~~~~fp------~~it~l~~L~~ln~s~n~i~-~vp~s----~~~~~~l~~lnL~~n~l~-~lP~~~~~l  113 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFP------IQITLLSHLRQLNLSRNYIR-SVPSS----CSNMRNLQYLNLKNNRLQ-SLPASISEL  113 (1081)
T ss_pred             eeEEeeccccccccCC------chhhhHHHHhhcccchhhHh-hCchh----hhhhhcchhheeccchhh-cCchhHHhh
Confidence            4889999999886543      34777899999999999998 67877    899999999999999998 899999999


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCC------------------CCccCCCCCchhhHHHHHHHHh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFP------------------CPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~------------------~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      .+|++|++++|+|. .+|.-+..++.+..                  ...+..|.+.+.++..+..++.
T Consensus       114 knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~  181 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH  181 (1081)
T ss_pred             hcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence            99999999999996 88887766554322                  1234455555666666666655

>PLN03210 Resistant to P

Probab=98.24  E-value=1.6e-06  Score=85.02  Aligned_cols=92  Identities=17%  Similarity=0.088  Sum_probs=74.2

Q ss_pred             CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCC
Q 028394          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL  181 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l  181 (209)
                      ..+|+.|++++|.+. .+|..    +..+++|++|+|+++...+.+|. ++.+++|+.|+|++|..-..+|.+++++.+|
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDG----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccc----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            578899999999887 57776    88899999999998876667875 7888999999999988778999999999888


Q ss_pred             CCCCccCCCCCchhhHHHH
Q 028394          182 FPCPIFCGSYFTEQLEVLI  200 (209)
Q Consensus       182 ~~~~~~~~n~~~~~~p~~~  200 (209)
                      .. ..+.++..-+.+|..+
T Consensus       684 ~~-L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        684 ED-LDMSRCENLEILPTGI  701 (1153)
T ss_pred             CE-EeCCCCCCcCccCCcC
Confidence            75 6666665556666544

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.23  E-value=6.3e-08  Score=82.52  Aligned_cols=98  Identities=22%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEeccc-CCCCCcchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~-N~l~g~iP~~l~  152 (209)
                      ...+.|+|..|.+++++     +..|..+++|+.||||+|.++-.-|..    |.++++|.+|-+.+ |+++...-..|+
T Consensus        67 ~~tveirLdqN~I~~iP-----~~aF~~l~~LRrLdLS~N~Is~I~p~A----F~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIP-----PGAFKTLHRLRRLDLSKNNISFIAPDA----FKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             CcceEEEeccCCcccCC-----hhhccchhhhceecccccchhhcChHh----hhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            35788999999988654     567899999999999999998555555    77777666654444 777733334566


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCC
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      +|.+|+.|.+.-|++.-.....+..+.+
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~  165 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPS  165 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence            6666666666666665444444444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=6e-08  Score=71.75  Aligned_cols=116  Identities=21%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      .-+++.++|++|.+..++     ...-..++.++.|++++|.++ .+|.+    +..++.|+.|+++.|.|. ..|..+.
T Consensus        52 ~~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neis-dvPeE----~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEIS-DVPEE----LAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             CceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhh-hchHH----HhhhHHhhhcccccCccc-cchHHHH
Confidence            458999999999987543     333445678899999999998 78988    999999999999999998 6788888


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                      .+.+|-.|+..+|... +||..+.+.+. .....+.++.+.+.-+.-..
T Consensus       121 ~L~~l~~Lds~~na~~-eid~dl~~s~~-~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARA-EIDVDLFYSSL-PALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             HHHhHHHhcCCCCccc-cCcHHHhcccc-HHHHHhcCCcccccCccccc
Confidence            8999999999999887 78876433222 22234556666655444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.18  E-value=1.1e-07  Score=84.31  Aligned_cols=116  Identities=23%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .+|.+||+.|+++.++.      .+..| -|+.|-+++|+++ .+|++    ++.+..|..||.+.|++. .+|..++.+
T Consensus       122 ~lt~l~ls~NqlS~lp~------~lC~l-pLkvli~sNNkl~-~lp~~----ig~~~tl~~ld~s~nei~-slpsql~~l  188 (722)
T KOG0532|consen  122 ALTFLDLSSNQLSHLPD------GLCDL-PLKVLIVSNNKLT-SLPEE----IGLLPTLAHLDVSKNEIQ-SLPSQLGYL  188 (722)
T ss_pred             HHHHhhhccchhhcCCh------hhhcC-cceeEEEecCccc-cCCcc----cccchhHHHhhhhhhhhh-hchHHhhhH
Confidence            45667777777664432      23322 3666667777765 56666    666666666666666665 556666666


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      .+|+.|.+..|++. .+|.++..| .|.. +++++|+++ .||..|.+++.|.
T Consensus       189 ~slr~l~vrRn~l~-~lp~El~~L-pLi~-lDfScNkis-~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLE-DLPEELCSL-PLIR-LDFSCNKIS-YLPVDFRKMRHLQ  237 (722)
T ss_pred             HHHHHHHHhhhhhh-hCCHHHhCC-ceee-eecccCcee-ecchhhhhhhhhe
Confidence            55555555555554 455554422 2222 444444332 3555555555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.13  E-value=9.1e-07  Score=73.47  Aligned_cols=54  Identities=28%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             hcCCCCCCEEeccCCccccccC--CCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          151 LGGLSSLRNLSLIGNRLIGSID--IKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       151 l~~l~~L~~L~L~~N~l~G~iP--~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++.+-+|.+||+.+|++.. +.  ..+|++.-|.. ..+-+|.+.+.+.-.-..|++|
T Consensus       370 L~KLYSLvnLDl~~N~Ie~-ldeV~~IG~LPCLE~-l~L~~NPl~~~vdYRTKVLa~F  425 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEE-LDEVNHIGNLPCLET-LRLTGNPLAGSVDYRTKVLARF  425 (490)
T ss_pred             hHhhhhheeccccccchhh-HHHhcccccccHHHH-HhhcCCCccccchHHHHHHHHH
Confidence            4556677777777777752 22  24555555543 5566777776655555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.09  E-value=1.2e-06  Score=74.84  Aligned_cols=83  Identities=24%  Similarity=0.253  Sum_probs=71.0

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      ..|..|++|+.|+|++|.+++.-+..    |.++..+++|.|..|++.-.--..|.++..|+.|+|.+|+++---|..+.
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~a----Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~  343 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGA----FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ  343 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhh----hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence            34888999999999999999765655    88999999999999999855556788999999999999999988888887


Q ss_pred             ccCCCCC
Q 028394          177 YASTLFP  183 (209)
Q Consensus       177 ~l~~l~~  183 (209)
                      .+.++..
T Consensus       344 ~~~~l~~  350 (498)
T KOG4237|consen  344 TLFSLST  350 (498)
T ss_pred             ccceeee
Confidence            7766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.93  E-value=1.3e-06  Score=77.75  Aligned_cols=106  Identities=16%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      -+..+-+++|+++.++      ..++.+.+|..||.+.|.+. .+|..    ++.+.+|+.|.+..|++. .+|+.++.|
T Consensus       144 pLkvli~sNNkl~~lp------~~ig~~~tl~~ld~s~nei~-slpsq----l~~l~slr~l~vrRn~l~-~lp~El~~L  211 (722)
T KOG0532|consen  144 PLKVLIVSNNKLTSLP------EEIGLLPTLAHLDVSKNEIQ-SLPSQ----LGYLTSLRDLNVRRNHLE-DLPEELCSL  211 (722)
T ss_pred             cceeEEEecCccccCC------cccccchhHHHhhhhhhhhh-hchHH----hhhHHHHHHHHHhhhhhh-hCCHHHhCC
Confidence            4667777888877543      34566778888888888887 56776    788888888888888877 667777744


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                       .|..||++.|+++ .||..+-+|+.|.. +-+.+|.+...
T Consensus       212 -pLi~lDfScNkis-~iPv~fr~m~~Lq~-l~LenNPLqSP  249 (722)
T KOG0532|consen  212 -PLIRLDFSCNKIS-YLPVDFRKMRHLQV-LQLENNPLQSP  249 (722)
T ss_pred             -ceeeeecccCcee-ecchhhhhhhhhee-eeeccCCCCCC
Confidence             3777888888887 78888888877764 66667776643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.86  E-value=3.2e-06  Score=70.31  Aligned_cols=102  Identities=22%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (209)
Q Consensus        76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  155 (209)
                      ++.+||++|.++.+..      ...-++.++.|++|+|.+. .+-.     +..+++|+.||||+|.++ .+-.+-..+-
T Consensus       286 LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~-~v~n-----La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG  352 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIR-TVQN-----LAELPQLQLLDLSGNLLA-ECVGWHLKLG  352 (490)
T ss_pred             hhhccccccchhhhhh------hhhhccceeEEecccccee-eehh-----hhhcccceEeecccchhH-hhhhhHhhhc
Confidence            4556666665543322      2333556666666666665 2222     555666666666666665 3433334555


Q ss_pred             CCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          156 SLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       156 ~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      +.+.|.|+.|.+..  -..++.+-+|. +.++.+|++.
T Consensus       353 NIKtL~La~N~iE~--LSGL~KLYSLv-nLDl~~N~Ie  387 (490)
T KOG1259|consen  353 NIKTLKLAQNKIET--LSGLRKLYSLV-NLDLSSNQIE  387 (490)
T ss_pred             CEeeeehhhhhHhh--hhhhHhhhhhe-eccccccchh
Confidence            56666666666541  12233344444 3666676654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.81  E-value=5.9e-06  Score=78.54  Aligned_cols=83  Identities=24%  Similarity=0.225  Sum_probs=69.4

Q ss_pred             CccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394           96 ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (209)
Q Consensus        96 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~  175 (209)
                      ..+|..++.|++|||++|.=-+.+|..    ++.|-+|++|+++...++ .+|..++++.+|.+|++..+.....+|.-.
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~----I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~  638 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPSS----IGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGIL  638 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCChH----HhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchh
Confidence            345778999999999988777789988    999999999999999998 889999999999999999888776776666


Q ss_pred             cccCCCCC
Q 028394          176 KYASTLFP  183 (209)
Q Consensus       176 ~~l~~l~~  183 (209)
                      ..+.+|..
T Consensus       639 ~~L~~Lr~  646 (889)
T KOG4658|consen  639 LELQSLRV  646 (889)
T ss_pred             hhcccccE
Confidence            66777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.80  E-value=4.1e-06  Score=72.59  Aligned_cols=96  Identities=26%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.+++++|.+..+.      ..+..++.|+.|++++|.++ .+|..    .+.++.|+.|++++|+++ .+|...+.+
T Consensus       141 nL~~L~l~~N~i~~l~------~~~~~l~~L~~L~l~~N~l~-~l~~~----~~~~~~L~~L~ls~N~i~-~l~~~~~~~  208 (394)
T COG4886         141 NLKELDLSDNKIESLP------SPLRNLPNLKNLDLSFNDLS-DLPKL----LSNLSNLNNLDLSGNKIS-DLPPEIELL  208 (394)
T ss_pred             hcccccccccchhhhh------hhhhccccccccccCCchhh-hhhhh----hhhhhhhhheeccCCccc-cCchhhhhh
Confidence            7889999999887552      23667899999999999998 67765    558889999999999998 788877677


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCC
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFP  183 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~  183 (209)
                      ..|+++.+++|+.. .+|..+.++.++..
T Consensus       209 ~~L~~l~~~~N~~~-~~~~~~~~~~~l~~  236 (394)
T COG4886         209 SALEELDLSNNSII-ELLSSLSNLKNLSG  236 (394)
T ss_pred             hhhhhhhhcCCcce-ecchhhhhcccccc
Confidence            77889999888643 46666666666654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.72  E-value=6.9e-07  Score=66.23  Aligned_cols=99  Identities=18%  Similarity=0.107  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      .....++|++..+-.+.+.   ...+....+|+..+|++|.|. .+|+.    | .+++.++.+++++|+++ .+|..+.
T Consensus        27 kE~h~ldLssc~lm~i~da---vy~l~~~~el~~i~ls~N~fk-~fp~k----ft~kf~t~t~lNl~~neis-dvPeE~A   97 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADA---VYMLSKGYELTKISLSDNGFK-KFPKK----FTIKFPTATTLNLANNEIS-DVPEELA   97 (177)
T ss_pred             HHhhhcccccchhhHHHHH---HHHHhCCceEEEEecccchhh-hCCHH----Hhhccchhhhhhcchhhhh-hchHHHh
Confidence            3445667777655433221   112445678899999999998 56665    5 45568999999999998 8999999


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCCC
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLF  182 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~  182 (209)
                      .++.|+.|++++|.|. ..|.-+..+.++.
T Consensus        98 am~aLr~lNl~~N~l~-~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   98 AMPALRSLNLRFNPLN-AEPRVIAPLIKLD  126 (177)
T ss_pred             hhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence            9999999999999998 5676666665553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.67  E-value=2e-05  Score=75.02  Aligned_cols=101  Identities=21%  Similarity=0.144  Sum_probs=78.8

Q ss_pred             CCCCCEEEccCce--eccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394          102 FQQLESLYLIGNN--IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS  179 (209)
Q Consensus       102 l~~L~~L~Ls~N~--l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~  179 (209)
                      .+.|+.|-+..|.  +. .++.+   .|..++.|+.|||++|.=-+.+|..++++-+|++|++++..++ .+|..++++.
T Consensus       544 ~~~L~tLll~~n~~~l~-~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk  618 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLL-EISGE---FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK  618 (889)
T ss_pred             CCccceEEEeecchhhh-hcCHH---HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence            4578899998886  33 44443   2678999999999998877899999999999999999999999 8999999999


Q ss_pred             CCCCCCccCCCCCchhhHHHHHHHHhhhh
Q 028394          180 TLFPCPIFCGSYFTEQLEVLIRDLARFLR  208 (209)
Q Consensus       180 ~l~~~~~~~~n~~~~~~p~~~~~L~~~~~  208 (209)
                      .|.. ..+..+..-..+|..+..|.++.+
T Consensus       619 ~L~~-Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  619 KLIY-LNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hhhe-eccccccccccccchhhhcccccE
Confidence            8875 555555544455666665665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.48  E-value=4.2e-05  Score=67.03  Aligned_cols=104  Identities=29%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      ..+..+++.+|.+..+..      .+..+++|++|++++|.++...+      +..++.|+.|++++|.++ .++ .+..
T Consensus        95 ~~l~~l~l~~n~i~~i~~------~l~~~~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~-~~~-~~~~  160 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN------LLSSLVNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLIS-DIS-GLES  160 (414)
T ss_pred             cceeeeeccccchhhccc------chhhhhcchheeccccccccccc------hhhccchhhheeccCcch-hcc-CCcc
Confidence            567888899988876543      15668899999999999985433      678888999999999987 333 3556


Q ss_pred             CCCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCc
Q 028394          154 LSSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~  193 (209)
                      ++.|+.+++++|+++. ++.. ...+..+.. ..+.+|...
T Consensus       161 l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~-l~l~~n~i~  199 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVD-IENDELSELISLEE-LDLGGNSIR  199 (414)
T ss_pred             chhhhcccCCcchhhh-hhhhhhhhccchHH-HhccCCchh
Confidence            8889999999999884 3332 344444442 344444433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=4.1e-05  Score=63.66  Aligned_cols=88  Identities=24%  Similarity=0.263  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc-chhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-iP~~l~  152 (209)
                      .+|..+||.+|.++.+.++   ...+.++++|++|+|+.|.++..|-..    -..+.+|++|-|.+..+.-. .-..+.
T Consensus        71 ~~v~elDL~~N~iSdWseI---~~ile~lP~l~~LNls~N~L~s~I~~l----p~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEI---GAILEQLPALTTLNLSCNSLSSDIKSL----PLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             hhhhhhhcccchhccHHHH---HHHHhcCccceEeeccCCcCCCccccC----cccccceEEEEEcCCCCChhhhhhhhh
Confidence            4789999999998876654   456778999999999999998766543    23567888888887776532 334566


Q ss_pred             CCCCCCEEeccCCccc
Q 028394          153 GLSSLRNLSLIGNRLI  168 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~  168 (209)
                      .++.++.|+++.|.+.
T Consensus       144 ~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLR  159 (418)
T ss_pred             cchhhhhhhhccchhh
Confidence            7788888888888543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.12  E-value=0.0002  Score=35.91  Aligned_cols=19  Identities=42%  Similarity=0.396  Sum_probs=9.4

Q ss_pred             CCEEeccCCccccccCCCCc
Q 028394          157 LRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~  176 (209)
                      |++||+++|+|+ .||.+++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555555 4554433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.10  E-value=4.9e-05  Score=69.77  Aligned_cols=101  Identities=23%  Similarity=0.214  Sum_probs=53.2

Q ss_pred             EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh-hcCC
Q 028394           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGGL  154 (209)
Q Consensus        76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~-l~~l  154 (209)
                      +..++.+.|.+..+.      ..+.-++.++.|+|++|+++.. . .    +..+++|++|||++|++. .+|.. ...+
T Consensus       166 L~~a~fsyN~L~~mD------~SLqll~ale~LnLshNk~~~v-~-~----Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMD------ESLQLLPALESLNLSHNKFTKV-D-N----LRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             HhhhhcchhhHHhHH------HHHHHHHHhhhhccchhhhhhh-H-H----HHhcccccccccccchhc-cccccchhhh
Confidence            344555555554221      1233456677777777777632 1 2    666777777777777776 45542 1122


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                       +|+.|.+.+|.++.-  ..+.++.+|.. .+++.|-++
T Consensus       233 -~L~~L~lrnN~l~tL--~gie~LksL~~-LDlsyNll~  267 (1096)
T KOG1859|consen  233 -KLQLLNLRNNALTTL--RGIENLKSLYG-LDLSYNLLS  267 (1096)
T ss_pred             -hheeeeecccHHHhh--hhHHhhhhhhc-cchhHhhhh
Confidence             266666666665521  23444555443 555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.04  E-value=0.00023  Score=35.70  Aligned_cols=20  Identities=40%  Similarity=0.486  Sum_probs=11.0

Q ss_pred             CcEEecccCCCCCcchhhhcC
Q 028394          133 LKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus       133 L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      |++||+++|+++ .+|+.|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455566666555 55555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.03  E-value=0.00092  Score=52.74  Aligned_cols=81  Identities=27%  Similarity=0.363  Sum_probs=57.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchh--hh
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFS--SL  151 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~--~l  151 (209)
                      ....+||++|.+..+.       .|..++.|..|.+.+|+++- |.+.    + ..+++|+.|.|.+|++. .+-+  -+
T Consensus        43 ~~d~iDLtdNdl~~l~-------~lp~l~rL~tLll~nNrIt~-I~p~----L~~~~p~l~~L~LtnNsi~-~l~dl~pL  109 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-------NLPHLPRLHTLLLNNNRITR-IDPD----LDTFLPNLKTLILTNNSIQ-ELGDLDPL  109 (233)
T ss_pred             ccceecccccchhhcc-------cCCCccccceEEecCCccee-eccc----hhhhccccceEEecCcchh-hhhhcchh
Confidence            4567888888775433       26678888999999999884 4433    4 34567888889888875 2221  25


Q ss_pred             cCCCCCCEEeccCCccc
Q 028394          152 GGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~  168 (209)
                      ..+++|++|.+-+|..+
T Consensus       110 a~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             ccCCccceeeecCCchh
Confidence            67788888888888765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00012  Score=63.49  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVE  120 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip  120 (209)
                      .+|+.|||+.|-+..+-.+   ......|++|+.|+|+.|.+.-.+.
T Consensus       146 ~~v~~LdLS~NL~~nw~~v---~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPV---LKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             CcceeecchhhhHHhHHHH---HHHHHhcccchhcccccccccCCcc
Confidence            4788999998877544332   2335568888999999888864443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.92  E-value=0.00065  Score=59.56  Aligned_cols=89  Identities=28%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|+.+++..|.+.+ |...    +..+++|++|++++|+++..-+  +..++.|+.|++++|.++. ++. +..+
T Consensus        91 l~~~~~l~~l~l~~n~i~~-i~~~----l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~-~~~-~~~l  161 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEK-IENL----LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD-ISG-LESL  161 (414)
T ss_pred             cccccceeeeeccccchhh-cccc----hhhhhcchheeccccccccccc--hhhccchhhheeccCcchh-ccC-Cccc
Confidence            6678999999999999984 4443    6789999999999999985433  5677889999999999983 333 3335


Q ss_pred             CCCCCCCccCCCCCchhhH
Q 028394          179 STLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p  197 (209)
                      ..+.. ..+.+|.+...-+
T Consensus       162 ~~L~~-l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  162 KSLKL-LDLSYNRIVDIEN  179 (414)
T ss_pred             hhhhc-ccCCcchhhhhhh
Confidence            55543 5666776664433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.91  E-value=0.001  Score=54.08  Aligned_cols=64  Identities=30%  Similarity=0.437  Sum_probs=38.0

Q ss_pred             ccCCCCCCEEEccCc--eeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh---hcCCCCCCEEeccCCccc
Q 028394           99 FTPFQQLESLYLIGN--NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L~~N~l~  168 (209)
                      +..|++|+.|.+|.|  +.++.++.-    ..++++|++++++.|++.-  +..   +..+.+|..|++.++.-+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl----~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVL----AEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceeh----hhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            445667777777777  555555544    4555777777777777652  332   334455666666655544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.89  E-value=0.00048  Score=56.01  Aligned_cols=97  Identities=23%  Similarity=0.267  Sum_probs=63.1

Q ss_pred             CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccC--CCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc-
Q 028394          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN--HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA-  178 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l-  178 (209)
                      +..|+.+.+.+-.++ ++-.     +..|++|+.|++|.|  +.++.++.....+++|+++++++|+++  ++.++.-+ 
T Consensus        42 ~~~le~ls~~n~glt-t~~~-----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLT-TLTN-----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLK  113 (260)
T ss_pred             ccchhhhhhhcccee-eccc-----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhh
Confidence            445566666666665 2222     678889999999999  777777776777799999999999987  24444322 


Q ss_pred             --CCCC-----CCCccCCCCCchhhHHHHHHHHhh
Q 028394          179 --STLF-----PCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       179 --~~l~-----~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                        .+|.     .+..+..+....++...+..|+.+
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~L  148 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYL  148 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccc
Confidence              2222     122333444456777777776643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.78  E-value=0.00019  Score=66.10  Aligned_cols=81  Identities=22%  Similarity=0.231  Sum_probs=43.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .+..|||+.|.++...       .+..+++|+.|||+.|.+. .+|.-   ....+. |+.|.+.+|.++ .+ ..+.++
T Consensus       188 ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~-tL-~gie~L  253 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALT-TL-RGIENL  253 (1096)
T ss_pred             HhhhhccchhhhhhhH-------HHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHH-hh-hhHHhh
Confidence            4555666666655332       2444666666666666665 44432   112232 666666666665 22 224566


Q ss_pred             CCCCEEeccCCcccc
Q 028394          155 SSLRNLSLIGNRLIG  169 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G  169 (209)
                      .+|+.||+++|-+++
T Consensus       254 ksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhhhccchhHhhhhc
Confidence            666666666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.65  E-value=0.0025  Score=50.33  Aligned_cols=81  Identities=23%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (209)
Q Consensus        76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  155 (209)
                      =.+++|.+..+..+..+      =.-+.+...+||++|.+. .++.     +..++.|.+|.|++|+++..-|.--.-++
T Consensus        21 e~e~~LR~lkip~ienl------g~~~d~~d~iDLtdNdl~-~l~~-----lp~l~rL~tLll~nNrIt~I~p~L~~~~p   88 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENL------GATLDQFDAIDLTDNDLR-KLDN-----LPHLPRLHTLLLNNNRITRIDPDLDTFLP   88 (233)
T ss_pred             ccccccccccccchhhc------cccccccceecccccchh-hccc-----CCCccccceEEecCCcceeeccchhhhcc
Confidence            34567777766543321      011457788999999986 4554     88999999999999999965555445568


Q ss_pred             CCCEEeccCCccc
Q 028394          156 SLRNLSLIGNRLI  168 (209)
Q Consensus       156 ~L~~L~L~~N~l~  168 (209)
                      +|..|.|.+|++.
T Consensus        89 ~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   89 NLKTLILTNNSIQ  101 (233)
T ss_pred             ccceEEecCcchh
Confidence            8999999999986

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.22  E-value=0.00037  Score=57.63  Aligned_cols=85  Identities=32%  Similarity=0.272  Sum_probs=54.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhc
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLG  152 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~  152 (209)
                      .|..|+.-|.++.++.       ...+++.|++|.||-|+++..-|      +..+++|++|+|..|.+. .+.+  .+.
T Consensus        20 ~vkKLNcwg~~L~DIs-------ic~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLk   85 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-------ICEKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLK   85 (388)
T ss_pred             HhhhhcccCCCccHHH-------HHHhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHh
Confidence            4455555555554332       24457777888888887774322      677777888888877776 3332  356


Q ss_pred             CCCCCCEEeccCCccccccCC
Q 028394          153 GLSSLRNLSLIGNRLIGSIDI  173 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~  173 (209)
                      ++++|+.|.|..|.-.|.-+.
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             cCchhhhHhhccCCcccccch
Confidence            777778888877777766554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.10  E-value=0.0001  Score=59.40  Aligned_cols=85  Identities=16%  Similarity=0.072  Sum_probs=70.4

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      ..+|+.||++.|++..++.      .|..++.+..|+++.|.+. .+|..    ++.+..+..+++..|+.+ ..|.+++
T Consensus        41 ~kr~tvld~~s~r~vn~~~------n~s~~t~~~rl~~sknq~~-~~~~d----~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGK------NFSILTRLVRLDLSKNQIK-FLPKD----AKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             cceeeeehhhhhHHHhhcc------chHHHHHHHHHhccHhhHh-hChhh----HHHHHHHHHHHhhccchh-hCCcccc
Confidence            4689999999988765443      3666888899999999887 67877    888888999999999987 8899999


Q ss_pred             CCCCCCEEeccCCcccc
Q 028394          153 GLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G  169 (209)
                      ..+.++++++-.|.|.-
T Consensus       109 k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             ccCCcchhhhccCcchH
Confidence            99999999998888763

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.03  E-value=0.011  Score=51.76  Aligned_cols=86  Identities=19%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhh---
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS---  150 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~---  150 (209)
                      .+..|+|.+|...  ..   ......-+..|+.|||++|++- ..+.  +...+.++.|+.|+++.+.++. .+|+.   
T Consensus       223 sl~~L~L~~N~~~--~~---~~~~~~i~~~L~~LdLs~N~li-~~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~  294 (505)
T KOG3207|consen  223 SLEVLYLEANEII--LI---KATSTKILQTLQELDLSNNNLI-DFDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESL  294 (505)
T ss_pred             cHHHhhhhccccc--ce---ecchhhhhhHHhhccccCCccc-cccc--ccccccccchhhhhccccCcchhcCCCccch
Confidence            4666777777421  10   0112333667888888888775 2331  1125677788888888877764 23433   


Q ss_pred             --hcCCCCCCEEeccCCccc
Q 028394          151 --LGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       151 --l~~l~~L~~L~L~~N~l~  168 (209)
                        ...+++|++|+++.|++.
T Consensus       295 ~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  295 DKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhcccccceeeecccCccc
Confidence              345678888888888875

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.96  E-value=0.017  Score=26.97  Aligned_cols=11  Identities=36%  Similarity=0.461  Sum_probs=3.2

Q ss_pred             CcEEecccCCC
Q 028394          133 LKFLYLDYNHF  143 (209)
Q Consensus       133 L~~L~Ls~N~l  143 (209)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344444433

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.94  E-value=0.001  Score=53.80  Aligned_cols=98  Identities=15%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+....+.+.||++.|++. .+-..    ++.++.|..||++.|++. .+|..++....++.+++..|..+ ..|.+.+.
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n----~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKN----FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccc----hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            3556788999999999986 34444    788899999999999997 88999999999999999999998 78999999


Q ss_pred             cCCCCCCCccCCCCCchhhHHHHHHH
Q 028394          178 ASTLFPCPIFCGSYFTEQLEVLIRDL  203 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~~~p~~~~~L  203 (209)
                      +..+.. ...-++.|.....+.....
T Consensus       110 ~~~~k~-~e~k~~~~~~~~~~~v~~c  134 (326)
T KOG0473|consen  110 EPHPKK-NEQKKTEFFRKLFGFVWSC  134 (326)
T ss_pred             cCCcch-hhhccCcchHHHHhHhhhh
Confidence            888765 5566777776665555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.85  E-value=0.023  Score=47.12  Aligned_cols=69  Identities=22%  Similarity=0.168  Sum_probs=47.2

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh-----h---------hcCCCCCCEEeccC
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-----S---------LGGLSSLRNLSLIG  164 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-----~---------l~~l~~L~~L~L~~  164 (209)
                      +-++++|+..+||.|.|....|+.--.-++.-+.|.+|.+++|.+. ++..     .         ..+-|.|++.....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4567889999999998887777653333566788888888888874 2221     1         12346777887777


Q ss_pred             Cccc
Q 028394          165 NRLI  168 (209)
Q Consensus       165 N~l~  168 (209)
                      |+|.
T Consensus       167 NRle  170 (388)
T COG5238         167 NRLE  170 (388)
T ss_pred             chhc
Confidence            7764

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.24  E-value=0.069  Score=46.88  Aligned_cols=82  Identities=16%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccC-CCCCcchhhhc
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNNSIFSSLG  152 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N-~l~g~iP~~l~  152 (209)
                      ..+.|+++++.+.+++.+         -.+|+.|.+++ +.++ .+|..    +  .++|++|++++| ++. .+|+   
T Consensus        53 ~l~~L~Is~c~L~sLP~L---------P~sLtsL~Lsnc~nLt-sLP~~----L--P~nLe~L~Ls~Cs~L~-sLP~---  112 (426)
T PRK15386         53 ASGRLYIKDCDIESLPVL---------PNELTEITIENCNNLT-TLPGS----I--PEGLEKLTVCHCPEIS-GLPE---  112 (426)
T ss_pred             CCCEEEeCCCCCcccCCC---------CCCCcEEEccCCCCcc-cCCch----h--hhhhhheEccCccccc-cccc---
Confidence            467888888877655321         13588888877 4453 56654    4  357899999988 444 5664   


Q ss_pred             CCCCCCEEeccCCcc--ccccCCCCcccC
Q 028394          153 GLSSLRNLSLIGNRL--IGSIDIKGKYAS  179 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l--~G~iP~~~~~l~  179 (209)
                         +|+.|+++.|..  -+.+|.++..|.
T Consensus       113 ---sLe~L~L~~n~~~~L~~LPssLk~L~  138 (426)
T PRK15386        113 ---SVRSLEIKGSATDSIKNVPNGLTSLS  138 (426)
T ss_pred             ---ccceEEeCCCCCcccccCcchHhhee
Confidence               366777776654  356777666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.05  E-value=0.035  Score=51.97  Aligned_cols=88  Identities=20%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc--chh--
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS--IFS--  149 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~--iP~--  149 (209)
                      .++..||+++.+++.+.       .+++|++|+.|.+.+=.+.-   .....++.+|++|+.||+|.......  +..  
T Consensus       173 pNL~sLDIS~TnI~nl~-------GIS~LknLq~L~mrnLe~e~---~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY  242 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNLS-------GISRLKNLQVLSMRNLEFES---YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY  242 (699)
T ss_pred             CccceeecCCCCccCcH-------HHhccccHHHHhccCCCCCc---hhhHHHHhcccCCCeeeccccccccchHHHHHH
Confidence            34555555555444321       23445555555444433321   00112356677777777777665432  121  


Q ss_pred             --hhcCCCCCCEEeccCCcccccc
Q 028394          150 --SLGGLSSLRNLSLIGNRLIGSI  171 (209)
Q Consensus       150 --~l~~l~~L~~L~L~~N~l~G~i  171 (209)
                        .-..||+|+.||.|++.+.+.+
T Consensus       243 lec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  243 LECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHhcccCccccEEecCCcchhHHH
Confidence              1124677777777777766554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.77  E-value=0.045  Score=28.17  Aligned_cols=14  Identities=36%  Similarity=0.427  Sum_probs=7.3

Q ss_pred             CCCcEEecccCCCC
Q 028394          131 NNLKFLYLDYNHFN  144 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~  144 (209)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.77  E-value=0.045  Score=28.17  Aligned_cols=14  Identities=36%  Similarity=0.427  Sum_probs=7.3

Q ss_pred             CCCcEEecccCCCC
Q 028394          131 NNLKFLYLDYNHFN  144 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~  144 (209)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.65  E-value=0.013  Score=49.73  Aligned_cols=93  Identities=22%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh----h
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----S  150 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~----~  150 (209)
                      .+..+.++.|.+..-+- ..-...+..+++|++|||..|-|+-.-....-..+..+++|+.|+++++.+...=-.    .
T Consensus       186 ~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             ccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            56666777766542121 000123556788888888888775321110001155666777777777777542222    2


Q ss_pred             h-cCCCCCCEEeccCCccc
Q 028394          151 L-GGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       151 l-~~l~~L~~L~L~~N~l~  168 (209)
                      + ...++|+.|.+.+|.++
T Consensus       265 l~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HhccCCCCceeccCcchhH
Confidence            2 23567777777777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.45  E-value=0.07  Score=27.41  Aligned_cols=20  Identities=40%  Similarity=0.503  Sum_probs=13.1

Q ss_pred             CCCCCEEeccCCccccccCCC
Q 028394          154 LSSLRNLSLIGNRLIGSIDIK  174 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~  174 (209)
                      +++|++|+|++|+++ .||..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356777777777776 55654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.45  E-value=0.07  Score=27.41  Aligned_cols=20  Identities=40%  Similarity=0.503  Sum_probs=13.1

Q ss_pred             CCCCCEEeccCCccccccCCC
Q 028394          154 LSSLRNLSLIGNRLIGSIDIK  174 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~  174 (209)
                      +++|++|+|++|+++ .||..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            356777777777776 55654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.76  E-value=0.069  Score=50.05  Aligned_cols=64  Identities=30%  Similarity=0.411  Sum_probs=48.5

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhcCCCCCCEEeccCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      ..++++|..||+|+.+++- + ..    +++|++|+.|.+.+=.|.. ..=..+.+|++|+.||+|.....
T Consensus       169 c~sFpNL~sLDIS~TnI~n-l-~G----IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISN-L-SG----ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             hhccCccceeecCCCCccC-c-HH----HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            4568999999999988872 3 22    8999999999888766652 22235678999999999977654

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.60  E-value=0.18  Score=44.34  Aligned_cols=65  Identities=12%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCC--Ccchh
Q 028394           74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFS  149 (209)
Q Consensus        74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~--g~iP~  149 (209)
                      ..++.|++++ +.++.+.      +.+  ..+|+.|++++| .+. .+|+.          |+.|+++.|...  +.+|.
T Consensus        72 ~sLtsL~Lsnc~nLtsLP------~~L--P~nLe~L~Ls~Cs~L~-sLP~s----------Le~L~L~~n~~~~L~~LPs  132 (426)
T PRK15386         72 NELTEITIENCNNLTTLP------GSI--PEGLEKLTVCHCPEIS-GLPES----------VRSLEIKGSATDSIKNVPN  132 (426)
T ss_pred             CCCcEEEccCCCCcccCC------chh--hhhhhheEccCccccc-ccccc----------cceEEeCCCCCcccccCcc
Confidence            4588888876 3343322      112  247888888887 444 45543          666777766542  24554


Q ss_pred             hhcCCCCCCEEecc
Q 028394          150 SLGGLSSLRNLSLI  163 (209)
Q Consensus       150 ~l~~l~~L~~L~L~  163 (209)
                      .      |+.|.+.
T Consensus       133 s------Lk~L~I~  140 (426)
T PRK15386        133 G------LTSLSIN  140 (426)
T ss_pred             h------Hhheecc
Confidence            3      5566654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=0.066  Score=45.04  Aligned_cols=68  Identities=31%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccc
Q 028394          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS  170 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~  170 (209)
                      ..++++.+||.+|.++.-  .+++.-+.+|+.|++|+|+.|+++..|-..=..+.+|++|-|.+..+...
T Consensus        69 ~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~  136 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT  136 (418)
T ss_pred             HhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence            367889999999998631  11122267899999999999999855433213566888888888777644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.99  E-value=0.052  Score=46.26  Aligned_cols=91  Identities=22%  Similarity=0.192  Sum_probs=41.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc---chhcCCCCCCcEEecccCCCCC----c
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG---LDTLSRLNNLKFLYLDYNHFNN----S  146 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~---~~~~~~l~~L~~L~Ls~N~l~g----~  146 (209)
                      ..+..+....|++..-+...+ ...|...+.|+.+.++.|.+.   |...   ...+..+++|+.|||..|.|+-    .
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~-A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATAL-AEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             cceEEEEeeccccccccHHHH-HHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            345555555555432211000 112333455566666665543   1110   1224555666666666666542    1


Q ss_pred             chhhhcCCCCCCEEeccCCccc
Q 028394          147 IFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       147 iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      +-..+..+++|+.|++++..++
T Consensus       233 LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  233 LAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHhcccchheeecccccccc
Confidence            2233444555666666555543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.81  E-value=0.036  Score=28.00  Aligned_cols=12  Identities=33%  Similarity=0.384  Sum_probs=4.1

Q ss_pred             CcEEecccCCCC
Q 028394          133 LKFLYLDYNHFN  144 (209)
Q Consensus       133 L~~L~Ls~N~l~  144 (209)
                      |++|+|++|+++
T Consensus         4 L~~L~l~~n~i~   15 (24)
T PF13516_consen    4 LETLDLSNNQIT   15 (24)
T ss_dssp             -SEEE-TSSBEH
T ss_pred             CCEEEccCCcCC
Confidence            344444444433

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.044  Score=46.07  Aligned_cols=58  Identities=26%  Similarity=0.259  Sum_probs=31.2

Q ss_pred             CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccC
Q 028394          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG  164 (209)
Q Consensus       104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  164 (209)
                      .|+++|||+..++-.--.   .-++.+.+|+.|.|.++++...|-..++.-..|+.|+|+.
T Consensus       186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            466666666555321000   0134455666666666666666666666666666666653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.13  E-value=0.23  Score=41.41  Aligned_cols=93  Identities=19%  Similarity=0.195  Sum_probs=61.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc-------chhcCCCCCCcEEecccCCCCCc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG-------LDTLSRLNNLKFLYLDYNHFNNS  146 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~~~l~~L~~L~Ls~N~l~g~  146 (209)
                      ..++.++|++|.+..-..-.+ ...+.+-.+|+..++|.-. +|..-+..       ...+-++++|+.++||.|-|...
T Consensus        30 d~~~evdLSGNtigtEA~e~l-~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEEL-CNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             cceeEEeccCCcccHHHHHHH-HHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            478999999998742110000 1124456677777777643 33322221       12367899999999999999887


Q ss_pred             chhhh----cCCCCCCEEeccCCccc
Q 028394          147 IFSSL----GGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       147 iP~~l----~~l~~L~~L~L~~N~l~  168 (209)
                      .|+.+    ..-+.|.+|.|++|.+-
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            77754    55688999999999873

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.99  E-value=0.031  Score=46.50  Aligned_cols=79  Identities=27%  Similarity=0.303  Sum_probs=60.2

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh--
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--  150 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~--  150 (209)
                      -.-+..|.|+=|.++++.+       +..+++|+.|+|..|.|.. +.+  ..-+.++++|+.|.|..|.-.|.-+..  
T Consensus        40 Mp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~s-ldE--L~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIES-LDE--LEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             cccceeEEeeccccccchh-------HHHHHHHHHHHHHhccccc-HHH--HHHHhcCchhhhHhhccCCcccccchhHH
Confidence            3567888899898887654       6779999999999999863 222  122678999999999999998876653  


Q ss_pred             ---hcCCCCCCEEe
Q 028394          151 ---LGGLSSLRNLS  161 (209)
Q Consensus       151 ---l~~l~~L~~L~  161 (209)
                         +.-|++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence               45577777775

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.40  E-value=0.41  Score=24.91  Aligned_cols=17  Identities=29%  Similarity=0.327  Sum_probs=9.3

Q ss_pred             CCcEEecccCCCCCcchh
Q 028394          132 NLKFLYLDYNHFNNSIFS  149 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~  149 (209)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            3555666666655 4443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.07  E-value=2.4  Score=30.06  Aligned_cols=79  Identities=11%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.+.+.. .+..++     ...|..+++|+.+.+..+ +. .++..   .+..++.++.+.+.+ .+...-...|..+
T Consensus        13 ~l~~i~~~~-~~~~I~-----~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   13 NLESITFPN-TIKKIG-----ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             T--EEEETS-T--EE------TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCEEEECC-CeeEeC-----hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccccccccccccc
Confidence            567777764 344333     345777778888888775 44 44443   367777788888865 4432233456678


Q ss_pred             CCCCEEeccCC
Q 028394          155 SSLRNLSLIGN  165 (209)
Q Consensus       155 ~~L~~L~L~~N  165 (209)
                      ++|+.+++..|
T Consensus        81 ~~l~~i~~~~~   91 (129)
T PF13306_consen   81 TNLKNIDIPSN   91 (129)
T ss_dssp             TTECEEEETTT
T ss_pred             ccccccccCcc
Confidence            88888888665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.87  E-value=0.79  Score=23.81  Aligned_cols=15  Identities=33%  Similarity=0.547  Sum_probs=11.2

Q ss_pred             CCCCCEEeccCCccc
Q 028394          154 LSSLRNLSLIGNRLI  168 (209)
Q Consensus       154 l~~L~~L~L~~N~l~  168 (209)
                      +++|+.|++++|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356788888888875

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=81.59  E-value=1.2  Score=23.37  Aligned_cols=14  Identities=50%  Similarity=0.603  Sum_probs=10.2

Q ss_pred             CCCCEEeccCCccc
Q 028394          155 SSLRNLSLIGNRLI  168 (209)
Q Consensus       155 ~~L~~L~L~~N~l~  168 (209)
                      ++|++|||++|.|.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            46777888877774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=80.27  E-value=0.97  Score=38.27  Aligned_cols=60  Identities=23%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhh---hcCCCCCCEEeccC
Q 028394          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS---LGGLSSLRNLSLIG  164 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~L~L~~  164 (209)
                      .++++|..||||.+..   +.+..+..+-+++.|++|.++.+.  +.+|..   +...++|.+||+.+
T Consensus       310 ~rcp~l~~LDLSD~v~---l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVM---LKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HhCCceeeeccccccc---cCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            3577888888887642   112223337788888888777665  456664   46678888888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 4e-24
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 26  GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTR 85
             L +E + L+  +    D   L + W  +    + C ++ V C     +V  +DL   +
Sbjct: 8   QSLYREIHQLISFKDVLPDKNLLPD-WSSN---KNPCTFDGVTCR--DDKVTSIDLSS-K 60

Query: 86  NWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN 145
                   +++SL      LESL+L  ++I G      +       +L  L L  N  + 
Sbjct: 61  PLNVGFSAVSSSLL-SLTGLESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSG 114

Query: 146 SI--FSSLGGLSSLRNLSLIGNRLIGSIDI 173
            +   +SLG  S L+ L++  N L     +
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L +  NN +      G+  L   + L+ L +  N  +     ++   + L+ L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 162 LIGNRLIGSI 171
           +  N+ +G I
Sbjct: 254 ISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
             L      L  L L GN+  G V           + L+ L L  N+F+  +   +L  +
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 155 SSLRNLSLIGNRLIGSI 171
             L+ L L  N   G +
Sbjct: 343 RGLKVLDLSFNEFSGEL 359

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
           P + L+ L L  N   G + +         + L  L L  NHF  ++    G  S L +L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDF---LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 161 SLIGNRLIGSI 171
           +L  N   G +
Sbjct: 324 ALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS-SLRNLS 161
             LESL L  NN +G +  +   TL ++  LK L L +N F+  +  SL  LS SL  L 
Sbjct: 318 SLLESLALSSNNFSGELPMD---TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 162 LIGNRLIGSI 171
           L  N   G I
Sbjct: 375 LSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
             S       LE L L  N+I+G               LK L +  N  +  +   +   
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVG-WVLSDGCGELKHLAISGNKISGDV--DVSRC 199

Query: 155 SSLRNLSLIGNRLIGSI 171
            +L  L +  N     I
Sbjct: 200 VNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 8e-09
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
             L  + L  N + G +       + RL NL  L L  N F+ +I + LG   SL  L L
Sbjct: 490 TNLNWISLSNNRLTGEIPKW----IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

Query: 163 IGNRLIGSI 171
             N   G+I
Sbjct: 546 NTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L SL+L  N ++G + +     L  L+ L+ L L  N     I   L  + +L  L L 
Sbjct: 419 ELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 164 GNRLIGSI 171
            N L G I
Sbjct: 475 FNDLTGEI 482

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  N + G +       L  +  L+ L LD+N     I S L   ++L  +S
Sbjct: 441 LSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 162 LIGNRLIGSI 171
           L  NRL G I
Sbjct: 497 LSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
            P   L+ LYL  N   G +      TLS  + L  L+L +N+ + +I SSLG LS LR+
Sbjct: 391 NPKNTLQELYLQNNGFTGKI----PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446

Query: 160 LSLIGNRLIGSI 171
           L L  N L G I
Sbjct: 447 LKLWLNMLEGEI 458

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           + LE+L L  N++ G + +     LS   NL ++ L  N     I   +G L +L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 163 IGNRLIGSI 171
             N   G+I
Sbjct: 522 SNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG-LSSLRNLSL 162
           +L+ L +  N   G +          L +L++L L  N F   I   L G   +L  L L
Sbjct: 248 ELKLLNISSNQFVGPIPP------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 163 IGNRLIGSI 171
            GN   G++
Sbjct: 302 SGNHFYGAV 310

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   +      G        T     ++ FL + YN  +  I   +G +  L  L+
Sbjct: 607 LSTRNPCNITSRVYGGHT----SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662

Query: 162 LIGNRLIGSI 171
           L  N + GSI
Sbjct: 663 LGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
             L  L L  N+I+G +     D +  L  L  L L  N  +  I  ++  L+ L  + L
Sbjct: 656 PYLFILNLGHNDISGSI----PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

Query: 163 IGNRLIGSI 171
             N L G I
Sbjct: 712 SNNNLSGPI 720

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 12/150 (8%)

Query: 25  EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTT--GRVIKLDLR 82
           E C  Q++ ALLQ++    +   L + W+   +  +   W  V C+  T   RV  LDL 
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSS-WLPTTDCCNR-TWLGVLCDTDTQTYRVNNLDLS 58

Query: 83  DTRNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                    + + +SL      L  LY+ G NN+ G +       +++L  L +LY+ + 
Sbjct: 59  G--LNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIP----PAIAKLTQLHYLYITHT 111

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
           + + +I   L  + +L  L    N L G++
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           +  + ++L  N++A       L  +    NL  L L  N    ++   L  L  L +L++
Sbjct: 221 KNTQKIHLAKNSLAF-----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 163 IGNRLIGSI 171
             N L G I
Sbjct: 276 SFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
             S+ +  N + G +        + LN L F+ L  N          G   + + + L  
Sbjct: 176 FTSMTISRNRLTGKIPPT----FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 165 NRLIGSI 171
           N L   +
Sbjct: 231 NSLAFDL 237

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNL-KFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             L  +   GN I+G + +         + L   + +  N     I  +   L +L  + 
Sbjct: 149 PNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203

Query: 162 LIGNRLIGSI 171
           L  N L G  
Sbjct: 204 LSRNMLEGDA 213

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  L L  N I G +       L++L  L  L + +N+    I    G L      +  
Sbjct: 245 NLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYA 299

Query: 164 GNR 166
            N+
Sbjct: 300 NNK 302

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L ++G ++     ++ +  LS L +L  L + ++  ++SI + +  L  + ++ L 
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 164 GNRLIGSID 172
            N  I  I 
Sbjct: 145 YNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++ L +   +          + +S L+NL+ L +      +    +L GL+SL  L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 162 LIGNRLIGSI 171
           +  +    SI
Sbjct: 119 ISHSAHDDSI 128

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +    L  L +  +      ++  L  ++ L  +  + L YN     I   L  L  L+
Sbjct: 108 LSGLTSLTLLDISHSAH----DDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELK 162

Query: 159 NLSLIGNRL 167
           +L++  + +
Sbjct: 163 SLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            L  + L   N+        L  +   +N+K L ++  H  N  ++ + GLS+L  L ++
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIM 96

Query: 164 GNRLIGSIDIKG 175
           G   + S  I  
Sbjct: 97  GKD-VTSDKIPN 107

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
            LD+  + + +S       +      ++ S+ L  N          +  L  L  LK L 
Sbjct: 116 LLDISHSAHDDS-----ILTKINTLPKVNSIDLSYNG-----AITDIMPLKTLPELKSLN 165

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSI 171
           + ++  ++  +  +     L  L       IG  
Sbjct: 166 IQFDGVHD--YRGIEDFPKLNQLYAFSQT-IGGK 196

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           ++   F     L  L+L+ N+I   ++N   +   +  NL  L L +N  +++   +   
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQK-IKN---NPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 154 LSSLRNLSLIGNRLIGSID 172
           L +L+ L L  N++     
Sbjct: 144 LENLQELLLSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT + QL SL +  N I+  +E    +   +L  LK L L +N  +     +    +
Sbjct: 42  AANFTRYSQLTSLDVGFNTISK-LEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 156 SLRNLSLIGNRLIGSID 172
           +L  L L+ N +    +
Sbjct: 98  NLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 79  LDLRD---TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF 135
           LDL+     R W+ A              L  L L  N          ++    L  LK 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE----IPVEVFKDLFELKI 564

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           + L  N+ N    S      SL++L+L  N +
Sbjct: 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F     L+ L L    +     +        L NL  L L  N+  N     L GL  
Sbjct: 448 NSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 157 LRNLSLIGNRL 167
           L  L L  N L
Sbjct: 506 LEILDLQHNNL 516

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F+    LE L L  N I   +          L N+  +YL YN +     +S   + SL+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 159 NLSLIGNRL 167
            L L    L
Sbjct: 458 RLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNI----AGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
             +    ++LE L L  NN+            +  L  L++L  L L+ N F+       
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556

Query: 152 GGLSSLRNLSLIGNRLIGSI 171
             L  L+ + L  N L    
Sbjct: 557 KDLFELKIIDLGLNNLNTLP 576

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 14/78 (17%), Positives = 25/78 (32%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +++FT    L+ L L  +  +              + L  L L  N  +     +   L
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 155 SSLRNLSLIGNRLIGSID 172
             L  L L  N +   + 
Sbjct: 405 GHLEVLDLGLNEIGQELT 422

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                 + L+ L L  N I   +++E LD  +  ++LK L L  N            +  
Sbjct: 139 GTQVQLENLQELLLSNNKIQA-LKSEELDIFA-NSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 157 LRNLSLIGNRLIGSI 171
           L  L L   +L  S+
Sbjct: 197 LFGLFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN--NSIFSSL 151
           +    +   + +  +YL  N       N    + + + +L+ L L        +S  S  
Sbjct: 421 LTGQEWRGLENIFEIYLSYNKYLQLTRN----SFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 152 GGLSSLRNLSLIGNRLIGSID 172
             L +L  L L  N +    D
Sbjct: 477 QPLRNLTILDLSNNNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              +  L L  N +   +        +R + L  L + +N  +         L  L+ L+
Sbjct: 24  PTNITVLNLTHNQLRR-LPA---ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79

Query: 162 LIGNRLIGSID 172
           L  N L    D
Sbjct: 80  LQHNELSQLSD 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            +  L  L L  NN+         D+ + L  L++ +L+YN+  +    SL GL ++R L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 161 SLIGNRLIGSI 171
           +L  +    SI
Sbjct: 302 NLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL-----DTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
                 +  L L  +     +    L      +   L  L+ L ++ N       +   G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 154 LSSLRNLSLIGNRL 167
           L +L+ LSL  +  
Sbjct: 352 LINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH--------FNNS 146
           + S F P + L  L L  NNIA   ++     L  L  L+ L L +N+            
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDD----MLEGLEKLEILDLQHNNLARLWKHANPGG 527

Query: 147 IFSSLGGLSSLRNLSLIGNRLIGSI 171
               L GLS L  L+L  N      
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIP 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLN---NLKFLYLDYNHFNNSIFS 149
               F    QLE  +L  NNI     +   GL  +  LN   +     +           
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 150 SLGGLSSLRNLSLIGNRLIGSID 172
           S   L  L +L++  N + G   
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG-GL 154
             +F    +L+ + L  NN+            +   +LK L L  N   +      G   
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 155 SSLRNLSLIGNRLIGSID 172
            +L  L +  N    + +
Sbjct: 609 RNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG---GLSSLRNL 160
            L+ L L  N I              +  L  L+L+      S+   L      +S+RNL
Sbjct: 172 SLKKLELSSNQIKE----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 161 SLIGNRLIGSID 172
           SL  ++L  + +
Sbjct: 228 SLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL-- 154
             F    +L  L+L    +   +  E L       +++ L L  +  + +  ++  GL  
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLT-EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247

Query: 155 SSLRNLSLIGNRLIGSID 172
           ++L  L L  N L    +
Sbjct: 248 TNLTMLDLSYNNLNVVGN 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 159 NLSLIGNRLIGSI 171
            L + GN    + 
Sbjct: 449 VLKMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
                +F     LE L + GN+          D  + L NL FL L          ++  
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 153 GLSSLRNLSLIGNRLIGSI 171
            LSSL+ L++  N      
Sbjct: 492 SLSSLQVLNMSHNNFFSLD 510

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F  F +L+ L L    I   +E+        L++L  L L  N   +    +  GLSSL+
Sbjct: 48  FFSFPELQVLDLSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 159 NLSLIGNRLIGSID 172
            L  +   L    +
Sbjct: 104 KLVAVETNLASLEN 117

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
             +     L +L L GN I        L   S L++L+ L     +  +     +G L +
Sbjct: 70  GAYQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 157 LRNLSLIGNRLIG 169
           L+ L++  N +  
Sbjct: 126 LKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +FT  + L  L L    +            + L++L+ L + +N+F +        L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 155 SSLRNLSLIGNRLIGSI 171
           +SL+ L    N ++ S 
Sbjct: 518 NSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
            ++ + F     L+ L +  NN               LN+L+ L    NH   S    L 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 153 GL-SSLRNLSLIGNRLIGSIDIK 174
              SSL  L+L  N    + + +
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            ++L L  N +          +      L+ L L           +   LS L  L L G
Sbjct: 30  TKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 165 NRLIGSID 172
           N +     
Sbjct: 86  NPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGG 153
               F+    L+ L  +  N+A          +  L  LK L + +N   +  +      
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 154 LSSLRNLSLIGNRLIGSI 171
           L++L +L L  N++    
Sbjct: 148 LTNLEHLDLSSNKIQSIY 165

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           NA        LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF--KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 155 SSLRNLSLIGNRLIGSID 172
             L +L    + L    +
Sbjct: 396 EQLEHLDFQHSNLKQMSE 413

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 6/78 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            LF     + S  L+   I      E +   S     + L L    F       L  L  
Sbjct: 276 DLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329

Query: 157 LRNLSLIGNRLIGSIDIK 174
           L   S  G      +D+ 
Sbjct: 330 LTFTSNKGGNAFSEVDLP 347

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                 + L+ L +  N I      E     S L NL+ L L  N   +   + L  L  
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 157 LRN----LSLIGNRLIGSID 172
           +      L L  N +     
Sbjct: 175 MPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKF 135
           KL LR+  +       +  +       LE   L+          E  D   L  L NL  
Sbjct: 204 KLTLRNNFD----SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 136 LYLDYNHFN---NSIFSSLGGLSSLRNLSLIGNRLIGSIDI 173
                 + +   + I      L+++ + SL+   +    D 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 6/78 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
           +        L+ L L  N +     N        L  L+ L   +++      FS    L
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN-----FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 155 SSLRNLSLIGNRLIGSID 172
            +L  L +       + +
Sbjct: 421 RNLIYLDISHTHTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L  L L  N  +  V    +  L+ L   + +  ++ +  N        L  L NL++ 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 164 GNRL 167
             RL
Sbjct: 261 EFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF-LYLDYNHFNNSIFSSLGGLS 155
             F+    LE L L  N I   +    L  L ++  L   L L  N  N     +   + 
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 156 SLRNLSLIGNRLIGSI 171
            L  L+L  N    ++
Sbjct: 202 -LHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID 172
            + K L L +N   +    S      L+ L L    +    D
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 9e-09
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           + F   ++L+ L    + +    E         L  L +L + Y +          GL+S
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTE---FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 157 LRNLSLIGNRLIGSI 171
           L  L + GN    + 
Sbjct: 450 LNTLKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     L +L + GN+      +   +  +   NL FL L         +     L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 155 SSLRNLSLIGNRL 167
             L+ L++  N L
Sbjct: 497 HRLQLLNMSHNNL 509

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F+ F +L+ L L    I   +E+        L++L  L L  N   +    S  GL+
Sbjct: 49  SYSFSNFSELQWLDLSRCEIET-IED---KAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 156 SLRNLSLIGNRL 167
           SL NL  +  +L
Sbjct: 105 SLENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +++F     L  L L    +    E         L+ L+ L + +N+      S    L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQL----EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520

Query: 155 SSLRNLSLIGNRL 167
            SL  L    NR+
Sbjct: 521 YSLSTLDCSFNRI 533

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I          + S L +L+ L        +     +G L +L+
Sbjct: 76  WHGLHHLSNLILTGNPIQS-FSPG---SFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 159 NLSLIGNRL 167
            L++  N +
Sbjct: 132 KLNVAHNFI 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS 150
              +   F+    LE+L  +   +A          + +L  LK L + +N  ++  + + 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESF----PIGQLITLKKLNVAHNFIHSCKLPAY 148

Query: 151 LGGLSSLRNLSLIGNRL 167
              L++L ++ L  N +
Sbjct: 149 FSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS-LGG 153
             S F   ++L  L +   N     +         L +L  L +  N F ++  S+    
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 154 LSSLRNLSLIGNRL 167
            ++L  L L   +L
Sbjct: 472 TTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
            ++  +F    +L+ L +  NN+            ++L +L  L   +N    S      
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 153 GLSSLRNLSLIGNRL 167
              SL   +L  N +
Sbjct: 543 FPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               +++ L  N +    +     + S  + L++L L           +  GL  L NL 
Sbjct: 31  PSSTKNIDLSFNPL----KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 162 LIGNRL 167
           L GN +
Sbjct: 87  LTGNPI 92

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                   L+ L +  N I  C         S L NL  + L YN+      + L  L  
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLP---AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 157 LRN----LSLIGNRL 167
                  L +  N +
Sbjct: 179 NPQVNLSLDMSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   F     + ++ L G +I      + L+ + +    + L +               L
Sbjct: 277 DIVKFHCLANVSAMSLAGVSI------KYLEDVPKHFKWQSLSIIRCQLKQFPTLD---L 327

Query: 155 SSLRNLSLIGNRLIGSIDIKG 175
             L++L+L  N+   S     
Sbjct: 328 PFLKSLTLTMNKGSISFKKVA 348

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL--GGLSS 156
                 L+SL L  N                L +L +L L  N  + S   S    G +S
Sbjct: 324 TLDLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 157 LRNLSLIGNRLI 168
           LR+L L  N  I
Sbjct: 378 LRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLD--TLSRLNNLKF 135
           +L LR   N  +    +  +       L    LI          E  +   +  L ++  
Sbjct: 208 ELTLRGNFNSSN----IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 136 LYLDYNHFNNS--IFSSLGGLSSLRNLSLIGNRL 167
                 + N+          L+++  +SL G  +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +++ F  F  L+ L L   ++     +E    L  L+ LK L L  N F N    S    
Sbjct: 270 SSNTFHCFSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 155 SSLRNLSLIGNRLIGSI 171
            SL +LS+ GN     +
Sbjct: 325 PSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
             +  LF     L+ L L GN+       +  ++L  L  L+ L L +   ++    +  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 153 GLSSLRNLSLIGNRL 167
            L  + ++ L  NRL
Sbjct: 498 SLKMMNHVDLSHNRL 512

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            F    QLE L L    +      +       L+ LK L L ++  + S      GL +L
Sbjct: 395 AFKECPQLELLDLAFTRLKVK---DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 158 RNLSLIGNRLIGSIDI 173
           ++L+L GN        
Sbjct: 452 QHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           M  +  +  + L+ L+ I   I+  ++      L     L+ LYL  NH ++        
Sbjct: 96  MAETALSGPKALKHLFFIQTGISS-IDF---IPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 154 LSSLRNLSLIGNRL 167
              L+ L    N +
Sbjct: 152 TEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLG 152
                + F  L  L + GN         G   L  L NL+ L L ++    S      L 
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRL---ELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 153 GLSSLRNLSLIGNRLIG 169
            LS L++L+L  N  + 
Sbjct: 374 NLSHLQSLNLSYNEPLS 390

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
             + F+    L  L L    I   +     DT    + L  L L  N       ++L G 
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYW-IHE---DTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 155 SSLRNLSLIGNRL 167
            +L++L  I   +
Sbjct: 105 KALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F    +L++L L  N +    E      LS    LK L+      ++  F  L    +L 
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAET----ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 159 NLSLIGNRL 167
           +L L  N +
Sbjct: 133 SLYLGSNHI 141

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
                   + L  L L  ++I           L  L++L+ L L YN   +    +    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 155 SSLRNLSLIGNRL 167
             L  L L   RL
Sbjct: 400 PQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF---NNSIFSSLGG 153
           S F     L+ L L  + +    E         L  L+ L L  NHF   N    +SL  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474

Query: 154 LSSLRNLSLIGNRL 167
           L  L  L L    L
Sbjct: 475 LGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLSSL 157
                 L+SL L  N       +   +       L+ L L +         S    L  L
Sbjct: 372 LRNLSHLQSLNLSYNEP----LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 158 RNLSLIGNRLIGSID 172
           + L+L  + L  S +
Sbjct: 428 KVLNLSHSLLDISSE 442

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            E L    N +   ++N    T SRL NL FL L           +      L  L L  
Sbjct: 35  TECLEFSFNVLPT-IQN---TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 165 NRLIGSID 172
           N LI   +
Sbjct: 91  NPLIFMAE 98

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                  + LESLYL  N+I+    +  L        LK L    N  +      +  L 
Sbjct: 122 FIPLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Query: 156 SLRNLSLIGNRL-IGSID 172
              NLSL  N   I  I+
Sbjct: 178 QATNLSLNLNGNDIAGIE 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   FT  + +  + L  N +        ++ LS L  + +L L  NH +  + S L  L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTS----SSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 155 SSLRNLSLIGNRLIGSIDIK 174
           S  R ++L  N L  +    
Sbjct: 547 SQQRTINLRQNPLDCTCSNI 566

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L+L+   N          +      +LE L L   ++     +      + L  +  + L
Sbjct: 454 LNLQG--NHFPKGNIQKTNSLQTLGRLEILVLSFCDL----SSIDQHAFTSLKMMNHVDL 507

Query: 139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
            +N   +S   +L  L  +  L+L  N +
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
            L+   T+N             +  Q L        +      +  +       +++ + 
Sbjct: 206 SLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDED--ISPAVFEGLCEMSVESIN 260

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           L  ++F N   ++    S L+ L L    L
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHL 290

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L+ L +  N I        +  L+ L+ L  L+L+ N   N     +GGL++L 
Sbjct: 261 VKDLTKLKMLNVGSNQI------SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 159 NLSLIGNRLIGSIDIKG 175
            L L  N +     +  
Sbjct: 315 TLFLSQNHITDIRPLAS 331

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  LYL  +NI        +  L+ L  +  L L  NH  + + S L  ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLN 158

Query: 159 NLSLIGNRLIGSIDIKG 175
            L++  +++     I  
Sbjct: 159 YLTVTESKVKDVTPIAN 175

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L +LY+  N I        +  L  L NL+ LYL+ ++ ++   S L  L+ + 
Sbjct: 84  LSNLVKLTNLYIGTNKI------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 159 NLSLIGNRLIGSID 172
           +L+L  N  +  + 
Sbjct: 136 SLNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L SL L  N I      E +  L+ L +L +     N   +   + +  ++ L 
Sbjct: 173 IANLTDLYSLSLNYNQI------EDISPLASLTSLHYFTAYVNQITD--ITPVANMTRLN 224

Query: 159 NLSLIGNRLIGSIDIKG 175
           +L +  N++     +  
Sbjct: 225 SLKIGNNKITDLSPLAN 241

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                QL  L +  N I        ++ +  L  LK L +  N  ++   S L  LS L 
Sbjct: 239 LANLSQLTWLEIGTNQI------SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 159 NLSLIGNRLIGSI 171
           +L L  N+L    
Sbjct: 291 SLFLNNNQLGNED 303

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              LE L L GN I        +  LS L  L  LY+  N    +  S+L  L++LR L 
Sbjct: 65  LTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELY 116

Query: 162 LIGNRLIGSIDIKG 175
           L  + +     +  
Sbjct: 117 LNEDNISDISPLAN 130

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 7e-07
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                QL SL+L  N +     NE ++ +  L NL  L+L  NH  +     L  LS + 
Sbjct: 283 LNNLSQLNSLFLNNNQL----GNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMD 336

Query: 159 NLSLIGNRL 167
           +       +
Sbjct: 337 SADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L SL +  N I        L  L+ L+ L +L +  N  ++   +++  L+ L+ L++
Sbjct: 221 TRLNSLKIGNNKI------TDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272

Query: 163 IGNRL 167
             N++
Sbjct: 273 GSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                ++ SL L  N+    +       LS +  L +L +  +   +   + +  L+ L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP-----LSNMTGLNYLTVTESKVKD--VTPIANLTDLY 180

Query: 159 NLSLIGNRLIGSIDIKG 175
           +LSL  N++     +  
Sbjct: 181 SLSLNYNQIEDISPLAS 197

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + +  L + G  +        +  +  L NL++L L+ N   +   S L  L  L 
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLT 91

Query: 159 NLSLIGNRL 167
           NL +  N++
Sbjct: 92  NLYIGTNKI 100

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   ++        + T   L ++  L +      +     +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 162 LIGNRLIGSIDIKG 175
           L GN++     +  
Sbjct: 73  LNGNQITDISPLSN 86

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 103 QQLESLYLIGNNIAGCVENEG----LDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSL 157
            +++ + +  N      + +     L        ++ +Y+ YN+     + +SL  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 158 RNLSLIGNRLIGSID 172
             L  + N+L G + 
Sbjct: 333 GMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 8/122 (6%)

Query: 52  WVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLI 111
           W  ++          V  N   GRV  L L            +  ++     +LE L L 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR----VPDAIGQ-LTELEVLALG 113

Query: 112 GNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL--SSLRNLSLIGNRLIG 169
            +         G   +S   + +       H+  +          S L    +  +    
Sbjct: 114 SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 170 SI 171
           SI
Sbjct: 174 SI 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
           ++L  L  + N + G      L        L  L L YN       +  G    + NLS 
Sbjct: 330 KKLGMLECLYNQLEGK-----LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 163 IGNRL 167
             N+L
Sbjct: 385 AHNKL 389

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 103 QQLESLYLIGNNIAGCVENEGL---DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
             + ++    N I             T  +  N+  + L  N  +          S L +
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 160 LSLIGNRLIG 169
           ++L+GN L  
Sbjct: 462 INLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 9/84 (10%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIF 148
           A+     +Q+E+L    N +              ++ +  +   YN          + + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDA---KSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 149 SSLGGLSSLRNLSLIGNRLIGSID 172
            +     ++ +++L  N++     
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 15/88 (17%)

Query: 103 QQLESLYLIGNNIAGCVENEGL---------------DTLSRLNNLKFLYLDYNHFNNSI 147
            +L   Y+  +        E                      L +L  + +        +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 148 FSSLGGLSSLRNLSLIGNRLIGSIDIKG 175
            + L  L  ++ +++  NR I    +K 
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKD 293

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR---- 158
             L S+ L  N +    ++    TL     L  + L YN F+    +     S+L+    
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLP---YLVGIDLSYNSFS-KFPTQPLNSSTLKGFGI 543

Query: 159 --NLSLIGNRLIGSI 171
                  GNR +   
Sbjct: 544 RNQRDAQGNRTLREW 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 11/73 (15%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN-------NSIFSSLGGL 154
              + S+ L  N I+   +    +  S  + L  + L  N               +    
Sbjct: 432 GINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 155 SSLRNLSLIGNRL 167
             L ++ L  N+L
Sbjct: 488 YLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGL---DTLSRLNNLKFLYLDYNHFNNSIFSSL-- 151
            LF+    L S+ L+GN +    +N      +       L  + L +N     +      
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRA 509

Query: 152 GGLSSLRNLSLIGNRL 167
             L  L  + L  N  
Sbjct: 510 TTLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 5/72 (6%)

Query: 99  FTPFQQLESLYLIGNNIAG---CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            T    L  + L  N+ +       N    TL             N         +    
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 156 SLRNLSLIGNRL 167
           SL  L +  N +
Sbjct: 567 SLTQLQIGSNDI 578

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F   +QLE L    +N+    E         L NL +L + + H   +      GLSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 159 NLSLIGNRLIGSI 171
            L + GN    + 
Sbjct: 154 VLKMAGNSFQENF 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     LE L + GN+          D  + L NL FL L          ++   L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 155 SSLRNLSLIGNRL 167
           SSL+ L++  N  
Sbjct: 199 SSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F    QL  L L  N ++   +     +     +LK+L L +N    ++ S+  GL 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 101

Query: 156 SLRNLSLIGNRL 167
            L +L    + L
Sbjct: 102 QLEHLDFQHSNL 113

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLS 155
           S+F   + L  L +   +      N      + L++L+ L +  N F  +        L 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRV-AFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 156 SLRNLSLIGNRL 167
           +L  L L   +L
Sbjct: 176 NLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +FT  + L  L L    +   +        + L++L+ L + +N+F +        L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQ-LSP---TAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 155 SSLRNLSLIGNRL 167
           +SL+ L    N +
Sbjct: 223 NSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF---NNSIFSSLG 152
            + F     L+ L +  NN    ++         LN+L+ L    NH             
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFS-LDT---FPYKCLNSLQVLDYSLNHIMTSKKQELQHF- 246

Query: 153 GLSSLRNLSLIGNRL 167
             SSL  L+L  N  
Sbjct: 247 -PSSLAFLNLTQNDF 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L+ L L GN +      + + TL+ L NL  L L  N  +N   + L GL+ L  L 
Sbjct: 220 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 271

Query: 162 LIGNRLIGSIDIKG 175
           L  N++     + G
Sbjct: 272 LGANQISNISPLAG 285

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 LE L +  N +        +  L++L NL+ L    N  ++   + LG L++L 
Sbjct: 173 LANLTTLERLDISSNKV------SDISVLAKLTNLESLIATNNQISD--ITPLGILTNLD 224

Query: 159 NLSLIGNRL 167
            LSL GN+L
Sbjct: 225 ELSLNGNQL 233

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        L  LS L  L  L L  N  +N   S L GL++L 
Sbjct: 239 LASLTNLTDLDLANNQI------SNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALT 290

Query: 159 NLSLIGNRLIGSIDIKG 175
           NL L  N+L     I  
Sbjct: 291 NLELNENQLEDISPISN 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L  +    N +        +  L  L  L  + ++ N   +   + L  L++L  L+
Sbjct: 67  LNNLTQINFSNNQL------TDITPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLT 118

Query: 162 LIGNRLIGSIDIKG 175
           L  N++     +K 
Sbjct: 119 LFNNQITDIDPLKN 132

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        +D L  L NL  L L  N  ++   S+L GL+SL+
Sbjct: 108 LANLTNLTGLTLFNNQI------TDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 159 NLSLIGNRLIGSIDIKG 175
            LS  GN++     +  
Sbjct: 160 QLSF-GNQVTDLKPLAN 175

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            T   Q+ +L      I      + +D +  LNNL  +    N   +   + L  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLV 93

Query: 159 NLSLIGNRLIGSIDIKG 175
           ++ +  N++     +  
Sbjct: 94  DILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L  L L  N I        +  L+ L  L  L L+ N   +   S +  L +L 
Sbjct: 261 LSGLTKLTELKLGANQI------SNISPLAGLTALTNLELNENQLED--ISPISNLKNLT 312

Query: 159 NLSLIGNRLIGSIDIKG 175
            L+L  N +     +  
Sbjct: 313 YLTLYFNNISDISPVSS 329

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +  + L  L L  NNI        +  +S L  L+ L+   N  ++   SSL  L+++ 
Sbjct: 305 ISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 159 NLSLIGNRLIGSIDIKG 175
            LS   N++     +  
Sbjct: 357 WLSAGHNQISDLTPLAN 373

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L+ L+   N +        + +L+ L N+ +L   +N  ++   + L  L+ +  L L
Sbjct: 331 TKLQRLFFYNNKV------SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL 382

Query: 163 IGNRLIGSI 171
                  + 
Sbjct: 383 NDQAWTNAP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +L  + +  N I        +  L+ L NL  L L  N   +     L  L++L 
Sbjct: 86  LKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLN 137

Query: 159 NLSLIGNRL 167
            L L  N +
Sbjct: 138 RLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L  L L  N I        +  LS L +L+ L         +    L  L++L 
Sbjct: 130 LKNLTNLNRLELSSNTI------SDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLE 180

Query: 159 NLSLIGNRL 167
            L +  N++
Sbjct: 181 RLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +    L+ L   GN +        L  L+ L  L+ L +  N    S  S L  L++L 
Sbjct: 152 LSGLTSLQQLSF-GNQV------TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLE 202

Query: 159 NLSLIGNRLIGSIDIKG 175
           +L    N++     +  
Sbjct: 203 SLIATNNQISDITPLGI 219

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +     L   N+          + + L+ +  L  D     +     +  L++L  ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQIN 74

Query: 162 LIGNRLIGSIDIKG 175
              N+L     +K 
Sbjct: 75  FSNNQLTDITPLKN 88

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L    N I        L  L+ L  +  L L+   + N+  +    +S   
Sbjct: 349 LANLTNINWLSAGHNQI------SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 159 NLSLIGNRLIGSIDI 173
            +  +   LI    I
Sbjct: 403 TVKNVTGALIAPATI 417

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L+ L L   NI        +  L+ L  L+ L +  NHF      S  GLS
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS 242

Query: 156 SLRNLSLIGNRL 167
           SL+ L ++ +++
Sbjct: 243 SLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
           A  F     LE L L  N+I   +E       + L +L  L L  N      +  F    
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEV---GAFNGLASLNTLELFDNWLTVIPSGAFE--- 144

Query: 153 GLSSLRNLSLIGNRL 167
            LS LR L L  N +
Sbjct: 145 YLSKLRELWLRNNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F     L  L L        +          L NLK+L L   +  +    +L  L 
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISE---GAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218

Query: 156 SLRNLSLIGNRL 167
            L  L + GN  
Sbjct: 219 GLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            TP   LE L + GN+           +   L++LK L++  +  +    ++  GL+SL 
Sbjct: 214 LTPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 159 NLSLIGNRL 167
            L+L  N L
Sbjct: 270 ELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + +        L+ L+ L+L  N   +    +   + SL 
Sbjct: 119 FNGLASLNTLELFDNWLTV-IPS---GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 159 NLSLIGNRLIGSID 172
            L L   + +  I 
Sbjct: 175 RLDLGELKKLEYIS 188

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L+ L+++ + ++  +E    +    L +L  L L +N+ ++        L 
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSL-IER---NAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290

Query: 156 SLRNLSLIGN 165
            L  L L  N
Sbjct: 291 YLVELHLHHN 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLK 112

Query: 159 NLSLIGNRL 167
           +LSL  N +
Sbjct: 113 SLSLEHNGI 121

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L+SL L  N I        ++ L  L  L+ LYL  N    +  + L  L+ L  LSL 
Sbjct: 110 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 161

Query: 164 GNRL 167
            N++
Sbjct: 162 DNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 18/82 (21%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------NLKFLYLDYNHFNN 145
           F +     L   ++   V    L+++ ++                 N+  L+L+ N   +
Sbjct: 20  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 79

Query: 146 SIFSSLGGLSSLRNLSLIGNRL 167
                L  L +L  L L  N++
Sbjct: 80  --IKPLTNLKNLGWLFLDENKI 99

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L++L L  N I        +  L+ L  L+ LYL  NH ++    +L GL +L  L L
Sbjct: 153 TKLDTLSLEDNQI------SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 204

Query: 163 IGNRLI 168
                +
Sbjct: 205 FSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
                  +L++LYL  N+I        L  L+ L NL  L L      N   +    L  
Sbjct: 169 VPLAGLTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 157 LRNLSLIGNRLIGSIDI 173
              +      L+    I
Sbjct: 223 PNTVKNTDGSLVTPEII 239

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L  L L   N+        +  L+ L  L  L L  NH +     S  GL  L+
Sbjct: 181 FEGLSNLRYLNLAMCNLRE------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234

Query: 159 NLSLIGNRL 167
            L +I +++
Sbjct: 235 KLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           +  F     L  L L        +          L+NL++L L   +       +L  L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLRE--IPNLTPLI 207

Query: 156 SLRNLSLIGNRL 167
            L  L L GN L
Sbjct: 208 KLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + F   + LE L L  N+I   +E       + L NL  L L  N        +   LS
Sbjct: 81  VNSFKHLRHLEILQLSRNHIRT-IEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLS 136

Query: 156 SLRNLSLIGNRL 167
            L+ L L  N +
Sbjct: 137 KLKELWLRNNPI 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            TP  +L+ L L GN+++         +   L +L+ L++  +       ++   L SL 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258

Query: 159 NLSLIGNRL 167
            ++L  N L
Sbjct: 259 EINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   + N        L+ LK L+L  N   +    +   + SLR
Sbjct: 108 FNGLANLNTLELFDNRLTT-IPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 159 NLSLIGNRLIGSID 172
            L L   + +  I 
Sbjct: 164 RLDLGELKRLSYIS 177

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L+ L++I + I   +E    +    L +L  + L +N+           L  L 
Sbjct: 227 FQGLMHLQKLWMIQSQIQ-VIER---NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282

Query: 159 NLSLIGN 165
            + L  N
Sbjct: 283 RIHLHHN 289

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              +F     LE L + GN+          D  + L NL FL L          ++   L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 155 SSLRNLSLIGNRL 167
           SSL+ L++  N+L
Sbjct: 494 SSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S F   +QLE L    +N+    E         L NL +L + + H   +      GLSS
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 157 LRNLSLIGNRLIGSI 171
           L  L + GN    + 
Sbjct: 447 LEVLKMAGNSFQENF 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGG 153
             S+F   + L  L +   +             + L++L+ L +  N F  +        
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 154 LSSLRNLSLIGNRL 167
           L +L  L L   +L
Sbjct: 469 LRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            +  F  F +L+ L L    I   +E+        L++L  L L  N   +    +  GL
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT-IED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 155 SSLRNLSLIGNRL 167
           SSL+ L  +   L
Sbjct: 100 SSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L +L L GN I    ++  L   S L++L+ L     +  +     +G L +L+
Sbjct: 72  YQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 159 NLSLIGNRL 167
            L++  N +
Sbjct: 128 ELNVAHNLI 136

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG 152
           +    F+    L+ L  +  N+A  +EN     +  L  LK L + +N   +  +     
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLAS-LEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 153 GLSSLRNLSLIGNRL 167
            L++L +L L  N++
Sbjct: 147 NLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +FT  + L  L L    +   +        + L++L+ L +  N   +        L+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLE-QLSP---TAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 156 SLRNLSLIGNRLIGS 170
           SL+ + L  N    S
Sbjct: 519 SLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
               ++L L  N +          +      L+ L L           +   LS L  L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 162 LIGNRL 167
           L GN +
Sbjct: 83  LTGNPI 88

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 LE L L  N ++   +     +     +LK+L L +N    ++ S+  GL  L 
Sbjct: 343 EVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 159 NLSLIGNRL 167
           +L    + L
Sbjct: 400 HLDFQHSNL 408

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 231 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 162 LIGNRL 167
           +  NRL
Sbjct: 285 ISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 156 SLRNLSLIGNRL 167
            L  L L  N L
Sbjct: 124 LLTVLVLERNDL 135

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              F   Q+LE LY+  N +        L+     +  LK L L +NH    +  +    
Sbjct: 271 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 323

Query: 155 SSLRNLSLIGNRL 167
             L NL L  N +
Sbjct: 324 DRLENLYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     ++ LY+  N I   +          +  L  L L+ N  ++          
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147

Query: 156 SLRNLSLIGNRL 167
            L  LS+  N L
Sbjct: 148 KLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           + +    +  L  + L  N +   +         ++  L+ LY+  N    ++      +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPI 300

Query: 155 SSLRNLSLIGNRL 167
            +L+ L L  N L
Sbjct: 301 PTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 5/69 (7%), Positives = 18/69 (26%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                  + +    + +           L     ++ L L+          +     +++
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 159 NLSLIGNRL 167
            L +  N +
Sbjct: 103 KLYMGFNAI 111

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 8e-07
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            AS F   +QL+ L L        ++    +    L NL+ L L  +        +  GL
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 155 SSLRNLSLIGNRL 167
             L  L L    L
Sbjct: 97  FHLFELRLYFCGL 109

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N+ +F   + L+ L L  N I   + +   +    L+NL+ L L YN       S+  GL
Sbjct: 282 NSRVFETLKDLKVLNLAYNKINK-IAD---EAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 155 SSLRNLSLIGNRL 167
             +  + L  N +
Sbjct: 338 PKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSS 150
           ++++   F     L  L L    ++  V  +G      L  L  L L  N   +  +  S
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG--YFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 151 LGGLSSLRNLSLIGNRL 167
            G L+SL+++    N++
Sbjct: 144 FGKLNSLKSIDFSSNQI 160

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENE-GLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              +    LE L+L  N +    E E   D    L++L+ LYL++N+ N+        L+
Sbjct: 445 QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504

Query: 156 SLRNLSLIGNRL 167
           +LR LSL  NRL
Sbjct: 505 ALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
           +    F     L+ L L  N +              L  + ++ L  NH       +   
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 154 LSSLRNLSLIGNRL 167
           L  L+ L L  N L
Sbjct: 361 LEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 78  KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLY 137
           +L L +     + E  +   +F     L+ LYL  N +     +      S L  L+ L 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL----NSLPPGVFSHLTALRGLS 510

Query: 138 LDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           L+ N       S     ++L  L +  N+L
Sbjct: 511 LNSNRLTV--LSHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL----- 151
                   L+ L L  N  + C  +    T S   +L+ L+L  N    +  + L     
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 152 GGLSSLRNLSLIGNRL 167
            GLS L+ L L  N L
Sbjct: 477 EGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 79  LDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL 138
           L L      ++    +    F   + L  L L  N I     +    +  +LN+LK +  
Sbjct: 102 LRLYFCGLSDAV---LKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDF 155

Query: 139 DYNHFNNSIFSSLGGLS--SLRNLSLIGNRLI 168
             N         L  L   +L   SL  N L 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGLS 155
            +       E L L  N I          +   L  L+ L L   +   +I   +   L 
Sbjct: 18  QVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 156 SLRNLSLIGNRL 167
           +LR L L  +++
Sbjct: 74  NLRILDLGSSKI 85

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 6/75 (8%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LG 152
           +   F     L  L L  + I         D    L +L  L L +   ++++       
Sbjct: 65  DKEAFRNLPNLRILDLGSSKI----YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 153 GLSSLRNLSLIGNRL 167
            L +L  L L  N++
Sbjct: 121 NLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 93  YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG 152
            + +S F    ++  + L  N+I          T   L  L+ L L  N       +++ 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHI----AIIQDQTFKFLEKLQTLDLRDNA-----LTTIH 378

Query: 153 GLSSLRNLSLIGNRLI 168
            + S+ ++ L GN+L+
Sbjct: 379 FIPSIPDIFLSGNKLV 394

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L  L L  NN+           L     L  + L YN     ++     +  L  L 
Sbjct: 225 NVELTILKLQHNNL------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 162 LIGNRL 167
           +  NRL
Sbjct: 279 ISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+L   F+Q+E L L    I            +  + ++ LY+ +N            + 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 156 SLRNLSLIGNRL 167
            L  L L  N L
Sbjct: 118 LLTVLVLERNDL 129

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
              F   Q+LE LY+  N +        L+     +  LK L L +NH    +  +    
Sbjct: 265 YHPFVKMQRLERLYISNNRL------VALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQF 317

Query: 155 SSLRNLSLIGNRL 167
             L NL L  N +
Sbjct: 318 DRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           +   F     ++ LY+  N I   +          +  L  L L+ N  ++         
Sbjct: 85  DTYAFAYAHTIQKLYMGFNAIRY-LPP---HVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 155 SSLRNLSLIGNRL 167
             L  LS+  N L
Sbjct: 141 PKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           +    +  L  + L  N +   +         ++  L+ LY+  N    ++      + +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEK-IMY---HPFVKMQRLERLYISNNRL-VALNLYGQPIPT 296

Query: 157 LRNLSLIGNRL 167
           L+ L L  N L
Sbjct: 297 LKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 5/69 (7%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                  + +    + +   +       L     ++ L L+          +     +++
Sbjct: 41  DITLNNQKIVTFKNSTMRK-LPAA---LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 159 NLSLIGNRL 167
            L +  N +
Sbjct: 97  KLYMGFNAI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F    +L +L +  NN+    E    DT     +L+ L L  N     +   L  + 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNL----ERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIP 186

Query: 156 SLRNLSLIGNRL 167
           SL + ++  N L
Sbjct: 187 SLFHANVSYNLL 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRN 159
            + L+ L +  N I   V        + LN +  + L  N   +S   +    G+  L  
Sbjct: 120 PKTLQELRVHENEIT-KVRK---SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175

Query: 160 LSLIGNRL 167
           + +    +
Sbjct: 176 IRIADTNI 183

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L  L+L GN I          +L  LNNL  L L +N  +     SL     LR L 
Sbjct: 191 PPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 162 LIGNRL 167
           L  N+L
Sbjct: 247 LNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+       L  L L  N+I+  V+N    +L+   +L+ L+L+ N     +   L    
Sbjct: 209 AASLKGLNNLAKLGLSFNSIS-AVDN---GSLANTPHLRELHLNNNKL-VKVPGGLADHK 263

Query: 156 SLRNLSLIGNRL 167
            ++ + L  N +
Sbjct: 264 YIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  N I    +         L NL  L L  N  +     +   L  L  L L  
Sbjct: 54  TALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 165 NRL 167
           N+L
Sbjct: 110 NQL 112

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 25/94 (26%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF----------- 143
               F   + L +L LI N I+  +        + L  L+ LYL  N             
Sbjct: 68  KDGDFKNLKNLHTLILINNKISK-ISP---GAFAPLVKLERLYLSKNQLKELPEKMPKTL 123

Query: 144 ------NNSIFS----SLGGLSSLRNLSLIGNRL 167
                  N I         GL+ +  + L  N L
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 23/93 (24%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------ 143
            S+F    Q+  + L  N +       G      +  L ++ +   +             
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENG--AFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

Query: 144 -----NNSI----FSSLGGLSSLRNLSLIGNRL 167
                 N I     +SL GL++L  L L  N +
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN +           L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRL 167
           +LR L L  N +
Sbjct: 81  TLRTLDLNNNYV 92

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+   PF +LE L L  N +           L  L+ L+ L L+ N+        L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGP 99

Query: 156 SLRNLSLIGNRL 167
           S+  L    N +
Sbjct: 100 SIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
            A L      LE L L  N I        +        LK L L  N     +       
Sbjct: 161 FAELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSA 213

Query: 155 SSLRNLSLIGNRL 167
           + +  +SL  N+L
Sbjct: 214 AGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKG 175
             N L  ++D++ 
Sbjct: 66  SSNVLYETLDLES 78

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             F +L++L L  N +        +         + ++ L  N     I  +L    +L 
Sbjct: 188 VVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 159 NLSLIGNRL 167
           +  L GN  
Sbjct: 241 HFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNL 160
            Q  +++YL  N I    +          + +++L L  N  +  +         +L +L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 161 SLIGNRL 167
           +L  N +
Sbjct: 175 NLQYNFI 181

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTL------------SRLNNLKFLYLDYNHFNNS 146
                 L +L L  N +   +    ++TL            SR    K +YL  N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 147 IFSSLGGLSSLRNLSLIGNRL 167
                G  S ++ L L  N +
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEI 156

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                +++ L L  N I         +  +  + L+ L L YN             + L+
Sbjct: 140 EGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLK 194

Query: 159 NLSLIGNRL 167
            L L  N+L
Sbjct: 195 TLDLSSNKL 203

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 1/66 (1%)

Query: 103 QQLESLYLIGNNIAGCVENEGLD-TLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             + S+    N I     N        +  N   + L YN             S +  + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 162 LIGNRL 167
           L  N +
Sbjct: 704 LSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            +L  L  + N +        L+       L  L LDYN               +  L  
Sbjct: 573 VKLGLLDCVHNKV------RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626

Query: 163 IGNRL 167
             N+L
Sbjct: 627 SHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL---------------DTLSRLNNLKFLYLDYNHF 143
                +L+ +Y   +                           + S L +L  + L     
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 144 NNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS 179
              +   L  L  L++L++  NR I +  +K  +  
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 103 QQLESLYLIGNNIAGCVENEGL-----DTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS 156
            +L+SL +  N      + +       D       ++  Y+ YN+      S SL  +  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 157 LRNLSLIGNRL 167
           L  L  + N++
Sbjct: 575 LGLLDCVHNKV 585

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 20/155 (12%), Positives = 37/155 (23%), Gaps = 15/155 (9%)

Query: 30  QERYALLQLRHFFNDDQCLQNCWVDDENY--------SDCCQWERVECN--DTTGRVIKL 79
           ++  AL  +    +           +            +   W        D  GRV  L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 80  DLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLD 139
            L                      +L+ L    ++        G + L+   + +  +  
Sbjct: 329 SLAGFGAKGRV-----PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174
             H+          L+    L    NR      IK
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           +     L ++ L  N +    ++      + L  L  + + YN F+ S  +     S L+
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLSDD---FRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLK 779

Query: 159 NLSLIGNRLIGSIDIKGKYASTLFPCP 185
              +   R      I  ++ + +  CP
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCP 806

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 10/82 (12%), Positives = 21/82 (25%), Gaps = 8/82 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLG 152
                   Q+E L    N +              +  +  +   YN       +I  S+ 
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNA---KSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 153 G--LSSLRNLSLIGNRLIGSID 172
                +   ++L  N +     
Sbjct: 669 DYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGL---DTLSRLNNLKFLYLDYNHFNNSIFSSL- 151
             LF     + ++ L  N +    EN              L  + L +N    S+     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFR 748

Query: 152 -GGLSSLRNLSLIGNRL 167
              L  L N+ +  N  
Sbjct: 749 ATTLPYLSNMDVSYNCF 765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 103 QQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNL 160
            QL++  +     A            ++   +L  L +  N     +   L     L  L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYIL 832

Query: 161 SLIGNRLIGSIDIK 174
            +  N  I SID+ 
Sbjct: 833 DIADNPNI-SIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 5/72 (6%)

Query: 99  FTPFQQLESLYLIGNNIAG---CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            T    L ++ +  N  +       N     L           + N       + +    
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN--SSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806

Query: 156 SLRNLSLIGNRL 167
           SL  L +  N +
Sbjct: 807 SLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 9/72 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGL--DTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLS 155
           F    +L  L L  N I      E +  D  +  + ++ L   +N         +   + 
Sbjct: 591 FGTNVKLTDLKLDYNQI------EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 156 SLRNLSLIGNRL 167
            + ++    N++
Sbjct: 645 VMGSVDFSYNKI 656

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           ASL      ++ L L GN ++          L+    L+ L L  N         L  LS
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 156 SLRNLSLIGNRL 167
           +LR L L  N +
Sbjct: 81  TLRTLDLNNNYV 92

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+   PF +LE L L  N +           L  L+ L+ L L+ N+        L    
Sbjct: 51  AADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNY-----VQELLVGP 99

Query: 156 SLRNLSLIGNRL 167
           S+  L    N +
Sbjct: 100 SIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A L      LE L L  N I        +        LK L L  N     +       +
Sbjct: 162 AELAASSDTLEHLNLQYNFI------YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 156 SLRNLSLIGNRL 167
            +  +SL  N+L
Sbjct: 215 GVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSL 162
            + +   +  +++   + +          N+K L L  N  +    + L   + L  L+L
Sbjct: 10  NRYKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 163 IGNRLIGSIDIKG 175
             N L  ++D++ 
Sbjct: 66  SSNVLYETLDLES 78

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 100 TPFQQLESLYLIGNNIAGCVENEGL-DTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
             F +L++L L  N +        +         + ++ L  N     I  +L    +L 
Sbjct: 188 VVFAKLKTLDLSSNKL------AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 159 NLSLIGNRL 167
           +  L GN  
Sbjct: 241 HFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNL 160
            Q  +++YL  N I    +          + +++L L  N  +  +         +L +L
Sbjct: 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 161 SLIGNRL 167
           +L  N +
Sbjct: 175 NLQYNFI 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTL------------SRLNNLKFLYLDYNHFNNS 146
                 L +L L  N +   +    ++TL            SR    K +YL  N     
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML 135

Query: 147 IFSSLGGLSSLRNLSLIGNRL 167
                G  S ++ L L  N +
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEI 156

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             +F     L+SL +  N++   + +      S LN+L+ L L+  +  +    +L  L 
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLV-YISH---RAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 156 SLRNLSLIGNRL 167
            L  L L    +
Sbjct: 177 GLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            S+     +L+ + L+G  +A  VE         LN L+ L +  N       S    + 
Sbjct: 265 GSMLHELLRLQEIQLVGGQLA-VVEP---YAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 156 SLRNLSLIGNRLI 168
           +L  L L  N L 
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                    L  L L  N I+  +E      L  L  L+ + L           +  GL+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPIS-TIEG---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 156 SLRNLSLIGNRL 167
            LR L++ GN+L
Sbjct: 297 YLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F+    LE L L   N+           LS L+ L  L L + + N     S   L  L+
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTE----ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 159 NLSLIGNRLIGSID 172
            L +     + ++ 
Sbjct: 204 VLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
           F     L +L L  N +   +        + L+NL  L +  N     +      L +L+
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPL---GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 159 NLSLIGNRL 167
           +L +  N L
Sbjct: 132 SLEVGDNDL 140

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
                +    L  L L   NI   + +    +  RL  LK L + +  + +++  +    
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 155 SSLRNLSLIGNRL 167
            +L +LS+    L
Sbjct: 224 LNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 20/92 (21%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS--------------------RLNNLKF 135
              F    +L+ L +        +    L  L+                     L  L+F
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL 167
           L L YN  +    S L  L  L+ + L+G +L
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N   F  F  LE L L  N ++  VE       + L NL+ L L  N           GL
Sbjct: 48  NQDEFASFPHLEELELNENIVSA-VEP---GAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 155 SSLRNLSLIGNRL 167
           S+L  L +  N++
Sbjct: 104 SNLTKLDISENKI 116

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +   L L  N I    +    D  +   +L+ L L+ N  +     +   L +LR L 
Sbjct: 31  PTETRLLDLGKNRIKTLNQ----DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLG 86

Query: 162 LIGNRL 167
           L  NRL
Sbjct: 87  LRSNRL 92

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                ++  L L GN +      + +  ++ L ++K L L      +   + L GLS+L+
Sbjct: 81  LKNLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQ 132

Query: 159 NLSLIGNRL 167
            L L  N++
Sbjct: 133 VLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L+ LYL  N I        +  L+ L NL++L +     ++   + L  LS L  L 
Sbjct: 128 LSNLQVLYLDLNQI------TNISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLK 179

Query: 162 LIGNRL 167
              N++
Sbjct: 180 ADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 L+ L +    +        L  L+ L+ L  L  D N  ++   S L  L +L 
Sbjct: 147 LAGLTNLQYLSIGNAQV------SDLTPLANLSKLTTLKADDNKISD--ISPLASLPNLI 198

Query: 159 NLSLIGNRL 167
            + L  N++
Sbjct: 199 EVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              L  L L  N I        L  L  L  +  L L  N   N   S++ GL S++ L 
Sbjct: 62  LNNLIGLELKDNQI------TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD 113

Query: 162 LIGNRLIGSIDIKG 175
           L   ++     + G
Sbjct: 114 LTSTQITDVTPLAG 127

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 + +L   G  +        ++ +  LNNL  L L  N   +   + L  L+ + 
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 159 NLSLIGNRL 167
            L L GN L
Sbjct: 89  ELELSGNPL 97

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG 153
              SLF     L++L +        +        + L +L  L +      N    SL  
Sbjct: 114 GVTSLFPNLTNLQTLRIGNVETFSEIRR---IDFAGLTSLNELEIKALSLRNYQSQSLKS 170

Query: 154 LSSLRNLSLIGNRL 167
           +  + +L+L  +  
Sbjct: 171 IRDIHHLTLHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF--- 148
           +Y  +++++  ++++ + +  + +   V          L +L+FL L  N          
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV-FLVPC---SFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 149 SSLGGLSSLRNLSLIGNRL 167
           +  G   SL+ L L  N L
Sbjct: 355 ACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
               F     L  L +   ++          +L  + ++  L L  +     +      L
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQ----SLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 155 SSLRNLSLIGNRL 167
           SS+R L L    L
Sbjct: 196 SSVRYLELRDTNL 208

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSL 157
           F     LE L L  N++     +        L++LK+L L  N +    + S    L++L
Sbjct: 70  FYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125

Query: 158 RNLSLIGNRLIGSID 172
           + L +        I 
Sbjct: 126 QTLRIGNVETFSEIR 140

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
           S      +L+ LY+  N +      + L   S    L  + +  N   +        L+S
Sbjct: 445 SFSLFLPRLQELYISRNKL------KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 157 LRNLSLIGNRLI 168
           L+ + L  N   
Sbjct: 499 LQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG 152
           +++S F P   L+ L L+GN     +    L     L NL+ L +      + I      
Sbjct: 89  LSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 153 GLSSLRNLSLIGNRL 167
           GL+SL  L +    L
Sbjct: 146 GLTSLNELEIKALSL 160

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
              ++SL L  N I       G   L    NL+ L L  +  N     +   L SL +L 
Sbjct: 25  TAAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 162 LIGNRL 167
           L  N L
Sbjct: 81  LSDNHL 86

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 22/89 (24%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------ 143
             +    + L SL +  N       +   D+      ++FL L                 
Sbjct: 380 GEILLTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

Query: 144 -----NNSIFSSLGGLSSLRNLSLIGNRL 167
                NN++ S    L  L+ L +  N+L
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQELYISRNKL 463

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
             LF+  Q LE L L  N+I   V+    +    +  L+ LYL  N    F   +     
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 153 GLSSLRNLSLIGNRL 167
            L  L  L L  N+L
Sbjct: 161 KLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLGGLS 155
            T    L SL L  N++   + +   +    + NL++L L  NH    +  +FS    L 
Sbjct: 60  PTRLTNLHSLLLSHNHLNF-ISS---EAFVPVPNLRYLDLSSNHLHTLDEFLFS---DLQ 112

Query: 156 SLRNLSLIGNRL 167
           +L  L L  N +
Sbjct: 113 ALEVLLLYNNHI 124

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            + F    QL+ LYL  N I+     E +   ++L  L  L L  N       + L  L 
Sbjct: 129 RNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 156 SL--RNLSLIGNRL 167
           +     L L  N L
Sbjct: 188 AWVKNGLYLHNNPL 201

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
            + L  L+L  N I    +   L+ L R + L  L L +N        SL  L +LR L 
Sbjct: 192 PETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

Query: 162 LIGNRL 167
           L  N+L
Sbjct: 248 LDNNKL 253

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
                 + +L  L L  N I   +EN    +LS L  L+ L+LD N   + + + L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIEN---GSLSFLPTLRELHLDNNKL-SRVPAGLPDLK 264

Query: 156 SLRNLSLIGNRL 167
            L+ + L  N +
Sbjct: 265 LLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 25/93 (26%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------ 143
              F   Q L +L L+ N I+  +        S L  L+ LY+  NH             
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK-IHE---KAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126

Query: 144 -----NNSIFS----SLGGLSSLRNLSLIGNRL 167
                +N I         GL ++  + + GN L
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRN 159
              L  L +  N I   V        S L N+  + +  N   NS F      GL  L  
Sbjct: 122 PSSLVELRIHDNRIR-KVPK---GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176

Query: 160 LSLIGNRL 167
           L +   +L
Sbjct: 177 LRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  N+I+   ++        L +L  L L  N  +     +   L  L+ L +  
Sbjct: 56  TTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 165 NRL 167
           N L
Sbjct: 112 NHL 114

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG--- 152
            +    L  L+L  N ++  V       L  L  L+ +YL  N+      + F  +G   
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVP----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 153 GLSSLRNLSLIGNRL 167
             +    +SL  N +
Sbjct: 292 KRAYYNGISLFNNPV 306

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
                 +  L+L GN +        +  L+ L NL +L+LD N   +   SSL  L  L+
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115

Query: 159 NLSLIGNRL 167
           +LSL  N +
Sbjct: 116 SLSLEHNGI 124

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L+SL L  N I        ++ L  L  L+ LYL  N   +   + L  L+ L  LSL 
Sbjct: 113 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLE 164

Query: 164 GNRL 167
            N++
Sbjct: 165 DNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
           +L++L L  N I        +  L+ L  L+ LYL  NH ++    +L GL +L  L L 
Sbjct: 157 KLDTLSLEDNQI------SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

Query: 164 GNRLI 168
               +
Sbjct: 209 SQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 18/82 (21%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLN----------------NLKFLYLDYNHFNN 145
           F +     L   ++   V    L+++ ++                 N+  L+L+ N   +
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD 82

Query: 146 SIFSSLGGLSSLRNLSLIGNRL 167
                L  L +L  L L  N++
Sbjct: 83  --IKPLANLKNLGWLFLDENKV 102

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
             +L++LYL  N+I        L  L+ L NL  L L      N   +    L     + 
Sbjct: 177 LTKLQNLYLSKNHI------SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 162 LIGNRLI 168
                L+
Sbjct: 231 NTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + L  L+L  N +      + L +L  L  LK L L++N  ++   + L  L  L 
Sbjct: 86  LANLKNLGWLFLDENKV------KDLSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLE 137

Query: 159 NLSLIGNRL 167
           +L L  N++
Sbjct: 138 SLYLGNNKI 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A+ FT    LE L L  N     V+     T   L  L  L+LD             GL+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 156 SLRNLSLIGNRL 167
           +L+ L L  N L
Sbjct: 130 ALQYLYLQDNAL 141

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
             LF     L+ LYL  N +   + +   DT   L NL  L+L  N  ++    +  GL 
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA-LPD---DTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 156 SLRNLSLIGNRL 167
           SL  L L  NR+
Sbjct: 178 SLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
            + ++L GN I+    +    +     NL  L+L  N       ++  GL+ L  L L  
Sbjct: 34  SQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 165 NRLIGSI 171
           N  + S+
Sbjct: 90  NAQLRSV 96

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLGGL 154
           A+ F   + L  L+L  N +A  ++       + L  L+ L L  N    S+  ++  GL
Sbjct: 49  AASFRACRNLTILWLHSNVLA-RIDA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

Query: 155 SSLRNLSLIGNRL 167
             L  L L    L
Sbjct: 105 GRLHTLHLDRCGL 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L  L+L GN I+   E         L++L  L L  N   +    +   L 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 156 SLRNLSLIGNRL 167
            L  L L  N L
Sbjct: 202 RLMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
              F     L+ L L  N +A  V          L  L  LYL  N+ +     +L  L 
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVA-HVHP---HAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 156 SLRNLSLIGN 165
           +L+ L L  N
Sbjct: 226 ALQYLRLNDN 235

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSL 157
               + LE L    N +      E +D ++ L  L+ L L  N     +    L     L
Sbjct: 482 LAALRCLEVLQASDNAL------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 158 RNLSLIGNRLIGSIDIKGKYASTL 181
             L+L GN L     I+ + A  L
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEML 559

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L   F  LE L LI   +        +  L +L  LK L L  N     +      L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 158 RNLSLIGNRL 167
            +L+L GN+L
Sbjct: 98  THLNLSGNKL 107

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L   F++LE L  I   +        +  L +LN LK L L  N  +  +        +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 158 RNLSLIGNRL 167
            +L+L GN++
Sbjct: 91  THLNLSGNKI 100

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSS 156
           L      LE L++  N I        L  + +L NL+ LY+  N   N      L  L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 157 LRNLSLIGN 165
           L +L L GN
Sbjct: 142 LEDLLLAGN 150

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
               + L  LY+        +E      L  L  L+ L +  +        +      L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELR---DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 159 NLSLIGNRL 167
            L+L  N L
Sbjct: 84  RLNLSFNAL 92

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI 163
            LE L +  N +      + +  L  L+ L+ L L  N   N     L  L  +  + L 
Sbjct: 129 NLEILSIRNNKL------KSIVMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLT 180

Query: 164 GNRLI 168
           G + +
Sbjct: 181 GQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 25/85 (29%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-----------------FN 144
           F  L+ L+L  N I        L  L  L  L+ L ++ N                   N
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDN 115

Query: 145 NSI--FSSLGGLSSLRNLSLIGNRL 167
           N +    SL  L +L  LS+  N+L
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLS 161
                   L   ++        L +   L+ ++    D ++  +   + +   ++L+ L 
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELH 69

Query: 162 LIGNRL 167
           L  N++
Sbjct: 70  LSHNQI 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 4e-05
 Identities = 31/219 (14%), Positives = 67/219 (30%), Gaps = 60/219 (27%)

Query: 25  EGCLE-------QERYALLQLRHFFNDD-----QCLQNCWVDDENY------SDCCQWER 66
           E  L        ++ +  L +   F          L   W D          +   ++  
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 67  VECNDTTGRV----IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE 122
           VE       +    I L+L+     E A   ++ S+      ++  Y    NI    +++
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYA---LHRSI------VDH-Y----NIPKTFDSD 462

Query: 123 GLDTLSRLNNLKFLYLDYNHFNN-------SIFSSLGGLSSLRNLSLIGNRLIGS---ID 172
            L     L+   + ++ + H  N       ++F  +       +   +  ++       +
Sbjct: 463 DL-IPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMV-----FLDFRFLEQKIRHDSTAWN 515

Query: 173 IKGKYASTLFPCPIFCGSYFTEQ---LEVLIRDLARFLR 208
             G   +TL     +   Y  +     E L+  +  FL 
Sbjct: 516 ASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLP 553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
            +   P+ +L  L L    +        L     L  L  L L +N    S+      L 
Sbjct: 48  LATLMPYTRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLP 100

Query: 156 SLRNLSLIGNRL 167
           +L  L +  NRL
Sbjct: 101 ALTVLDVSFNRL 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 98  LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
           L     Q +++    N I        LD    L  LK L ++ N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 158 RNLSLIGNRL 167
             L L  N L
Sbjct: 91  TELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSL 157
           F   ++L++L +  N I    E         L +L  L L  N          L  L SL
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 158 RNLSLIGN 165
             L ++ N
Sbjct: 116 TYLCILRN 123

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 95  NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL 154
           N + F+  Q L+ L +        + N   +T   L++L  L LDYN F      +  GL
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 155 SSLRNLSLIGNRL 167
           ++L  L+L    L
Sbjct: 103 ANLEVLTLTQCNL 115

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSSLG 152
            + F P   LE L L  NNI   ++         +     L L +N           +  
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIK-KIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQ 178

Query: 153 GLSSLRNLSLIGNRL 167
           G      L L    L
Sbjct: 179 GK-HFTLLRLSSITL 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGL 154
           +  F    ++  + +        ++    D L  L  LKFL +           + +   
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDP---DALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 155 SSLRNLSLIGNRLIGSI 171
                L +  N  + SI
Sbjct: 130 DIFFILEITDNPYMTSI 146

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 22/93 (23%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHF------------- 143
           +L     QL+ L L  N++               + L  L L +                
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSC---DWPSQLNSLNLSFTGLKQVPKGLPAKLSV 278

Query: 144 ----NNSI--FSSLGGLSSLRNLSLIGNRLIGS 170
                N +    S   L  + NLSL GN  + S
Sbjct: 279 LDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 94  MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN---NSIFSS 150
            +      F  L +L L  N   G           +   L+ L L             + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 151 LGGLSSLRNLSLIGNRLIGSID 172
                 L+ L L  N L  +  
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAG 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L  LYL    +        LD +S    LK L     H  +  FSS+G + +L 
Sbjct: 314 LSQNPKLVYLYLNNTEL------TELD-VSHNTKLKSLSCVNAHIQD--FSSVGKIPALN 364

Query: 159 NLSLIGNRLI 168
           N      + I
Sbjct: 365 NNFEAEGQTI 374

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH---FNNSIFSSLG 152
            S       L++L L  N I   +E    D+ S L +L+ L L YN+    ++S F    
Sbjct: 69  NSDLQRCVNLQALVLTSNGINT-IEE---DSFSSLGSLEHLDLSYNYLSNLSSSWFK--- 121

Query: 153 GLSSLRNLSLIGNRL 167
            LSSL  L+L+GN  
Sbjct: 122 PLSSLTFLNLLGNPY 136

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN--NLKFLYLDYNHFN---NSIFSS 150
                  Q +  L L        +    +D  S +    L+   LD  HF+       +S
Sbjct: 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 151 LGGLSSLRNLSLIGNRLI 168
           L    + RN+ +    L 
Sbjct: 250 LIKKFTFRNVKITDESLF 267

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 96  ASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS 155
           A + T  + L+ L +  N+++   +           +L  L +  N   ++IF  L    
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCS---WTKSLLSLNMSSNILTDTIFRCL--PP 421

Query: 156 SLRNLSLIGNRL 167
            ++ L L  N++
Sbjct: 422 RIKVLDLHSNKI 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 10/71 (14%)

Query: 97  SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS 156
            L      LE +    N +      E L  L  L  L  +Y D N     +        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYADNNSL-KKLPDLPL---S 216

Query: 157 LRNLSLIGNRL 167
           L ++    N L
Sbjct: 217 LESIVAGNNIL 227

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN---HFNNSIFSSLGGLS 155
           F+P+++L  + L  N I+        D    L +L  L L  N       S+F    GL 
Sbjct: 52  FSPYKKLRRIDLSNNQISELAP----DAFQGLRSLNSLVLYGNKITELPKSLFE---GLF 104

Query: 156 SLRNLSLIGNRL 167
           SL+ L L  N++
Sbjct: 105 SLQLLLLNANKI 116

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 103 QQLESLYLIGNNIAGCV-----ENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL 157
            +L  L +        +       +       L NL+ L L++     S+ +S+  L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 158 RNLSLIGNRL 167
           ++L +  + L
Sbjct: 209 KSLKIRNSPL 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.64
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.48
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.47
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.43
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.4
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.37
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.37
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.35
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.33
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.3
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.26
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.1
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.1
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.01
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.67
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.62
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.54
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.12
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.45
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.25
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.85
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.81
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.45
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	89.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.97

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=5.8e-28  Score=201.71  Aligned_cols=167  Identities=25%  Similarity=0.400  Sum_probs=125.8

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCcc--ccceEEcCCC--CcEEEEEcCCCCCCcccccccCCccccC
Q 028394           26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTT--GRVIKLDLRDTRNWESAEWYMNASLFTP  101 (209)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~--W~gv~C~~~~--~~v~~L~L~~~~l~~~~~~~~~~~~~~~  101 (209)
                      .|.++|++||++||+++.+|. .+.+|..   +.+||.  |.||+|+...  ++|+.|+|+++.+.....+   +..+..
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~---~~~l~~   74 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI---PSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC---CGGGGG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc---ChhHhC
Confidence            588999999999999998776 7899965   678998  9999998633  7999999999998731011   345667


Q ss_pred             CCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394          102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       102 l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      +++|++|++++ |.+.+.+|..    ++++++|++|++++|++++.+|..++++++|++|++++|+++|.+|..++++.+
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            77777777774 7777777776    777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCccCCCCCchhhHHHHHHHH
Q 028394          181 LFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       181 l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      |.. ..+.+|.+++.+|..+..++
T Consensus       151 L~~-L~L~~N~l~~~~p~~l~~l~  173 (313)
T 1ogq_A          151 LVG-ITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CCE-EECCSSCCEEECCGGGGCCC
T ss_pred             CCe-EECcCCcccCcCCHHHhhhh
Confidence            664 66667777776666665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=7.3e-25  Score=199.02  Aligned_cols=163  Identities=19%  Similarity=0.186  Sum_probs=142.4

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCCCCCccc---cceEEcCCCCcEEEEEcCCCCCCccccccc
Q 028394           26 GCLEQERYALLQLRHFFNDDQCL--------QNCWVDDENYSDCCQW---ERVECNDTTGRVIKLDLRDTRNWESAEWYM   94 (209)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~--------l~~W~~~~~~~~~C~W---~gv~C~~~~~~v~~L~L~~~~l~~~~~~~~   94 (209)
                      +....|++||.+++.++.++.+.        ..+|+.   +.+||.|   .||+|+. .++|+.|+|+++++.  |.+  
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~--g~l--   97 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNS-NGRVTGLSLEGFGAS--GRV--   97 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECT-TCCEEEEECTTSCCE--EEE--
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcC-CCCEEEEEecCcccC--CcC--
Confidence            34457999999999999877653        236965   6899999   9999986 589999999999986  332  


Q ss_pred             CCccccCCCCCCEEEccCc-------------------------------------------------------------
Q 028394           95 NASLFTPFQQLESLYLIGN-------------------------------------------------------------  113 (209)
Q Consensus        95 ~~~~~~~l~~L~~L~Ls~N-------------------------------------------------------------  113 (209)
                       ++.+++|++|++|+|++|                                                             
T Consensus        98 -p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~  176 (636)
T 4eco_A           98 -PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK  176 (636)
T ss_dssp             -CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred             -ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence             456899999999999988                                                             


Q ss_pred             -----------------eeccccCCCcchhcCCCCCCcEEecccCCCCCc-----------------chhhhc--CCCCC
Q 028394          114 -----------------NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-----------------IFSSLG--GLSSL  157 (209)
Q Consensus       114 -----------------~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L  157 (209)
                                       +++| ||..    ++++++|++|+|++|+++|.                 +|+.++  ++++|
T Consensus       177 ~~~~~~l~~l~l~~~~n~l~~-ip~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          177 KSSRITLKDTQIGQLSNNITF-VSKA----VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEE-ECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             cccccchhhhhhccccCCCcc-CCHH----HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                             4556 7777    99999999999999999996                 999999  99999


Q ss_pred             CEEeccCCccccccCCCCcccCCCCCCCccCCCC-Cch-hhHHHHHHH
Q 028394          158 RNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY-FTE-QLEVLIRDL  203 (209)
Q Consensus       158 ~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~-~~~-~~p~~~~~L  203 (209)
                      ++|++++|++.|.+|..++++++|.. ..+.+|. ++| .+|..++.|
T Consensus       252 ~~L~L~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~~l~~~~lp~~~~~L  298 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPTFLKALPEMQL-INVACNRGISGEQLKDDWQAL  298 (636)
T ss_dssp             CEEEEECCTTCSSCCTTTTTCSSCCE-EECTTCTTSCHHHHHHHHHHH
T ss_pred             CEEEecCCcCCccChHHHhcCCCCCE-EECcCCCCCccccchHHHHhh
Confidence            99999999999999999999999986 8889998 999 999999988

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=4.8e-24  Score=197.28  Aligned_cols=160  Identities=21%  Similarity=0.257  Sum_probs=103.6

Q ss_pred             CCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCccccceEEcCCCCcEEEEEcCCCCCCcc-cccccCCccccCCC
Q 028394           25 EGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWES-AEWYMNASLFTPFQ  103 (209)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C~W~gv~C~~~~~~v~~L~L~~~~l~~~-~~~~~~~~~~~~l~  103 (209)
                      +.+.++|++||++||+++.+|. .+++|..   +.+||+|.||+|+  .++|+.|+|+++.+... ..+   ++.+.+++
T Consensus         7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l---~~~l~~L~   77 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAV---SSSLLSLT   77 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHH---HHHTTTCT
T ss_pred             ccCCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCcc---ChhHhccC
Confidence            4457889999999999999888 8999964   6899999999998  68999999999987631 001   12344455


Q ss_pred             CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhcCCCCCCEEeccCCccccccCCCC-cccCC
Q 028394          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLGGLSSLRNLSLIGNRLIGSIDIKG-KYAST  180 (209)
Q Consensus       104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~G~iP~~~-~~l~~  180 (209)
                      +|+.++++.|.+. ++|..    ++.+++|++|||++|+++|.+|.  .++++++|++|+|++|.++|.+|..+ .++.+
T Consensus        78 ~L~~l~~~~~~~~-~l~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  152 (768)
T 3rgz_A           78 GLESLFLSNSHIN-GSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS  152 (768)
T ss_dssp             TCCEEECTTSCEE-ECCCC----CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred             cccccCCcCCCcC-CCchh----hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence            5555555555443 23444    55555566666666665555555  55555566666666665555555544 45555


Q ss_pred             CCCCCccCCCCCchhhHHH
Q 028394          181 LFPCPIFCGSYFTEQLEVL  199 (209)
Q Consensus       181 l~~~~~~~~n~~~~~~p~~  199 (209)
                      |.. ..+++|.+++.+|..
T Consensus       153 L~~-L~Ls~n~l~~~~~~~  170 (768)
T 3rgz_A          153 LEV-LDLSANSISGANVVG  170 (768)
T ss_dssp             CSE-EECCSSCCEEETHHH
T ss_pred             CCE-EECCCCccCCcCChh
Confidence            543 555555555555544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=7.5e-24  Score=198.26  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=140.0

Q ss_pred             CCCCcHHHHHHHHHHHhhCCCCCCCCCCCCCCC--CCCCC--ccc------------cceEEcCCCCcEEEEEcCCCCCC
Q 028394           24 SEGCLEQERYALLQLRHFFNDDQCLQNCWVDDE--NYSDC--CQW------------ERVECNDTTGRVIKLDLRDTRNW   87 (209)
Q Consensus        24 ~~~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~--~~~~~--C~W------------~gv~C~~~~~~v~~L~L~~~~l~   87 (209)
                      .+++..+|++||++||+++.+|     +|+...  ...+|  |.|            .||+|+. .++|+.|+|+++++.
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~  336 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK  336 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred             ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence            3445678999999999999766     564310  01355  999            9999986 689999999999987


Q ss_pred             cccccccCCccccCCCCCCEEEc-cCceeccc------------------------------------------------
Q 028394           88 ESAEWYMNASLFTPFQQLESLYL-IGNNIAGC------------------------------------------------  118 (209)
Q Consensus        88 ~~~~~~~~~~~~~~l~~L~~L~L-s~N~l~g~------------------------------------------------  118 (209)
                        |.+   ++.+++|++|++|+| ++|.++|.                                                
T Consensus       337 --G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~  411 (876)
T 4ecn_A          337 --GRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN  411 (876)
T ss_dssp             --EEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred             --CcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence              332   456899999999999 88877666                                                


Q ss_pred             ----------------------------cCCCcchhcCCCCCCcEEecccCCCCC-----------------cchhhhc-
Q 028394          119 ----------------------------VENEGLDTLSRLNNLKFLYLDYNHFNN-----------------SIFSSLG-  152 (209)
Q Consensus       119 ----------------------------ip~~~~~~~~~l~~L~~L~Ls~N~l~g-----------------~iP~~l~-  152 (209)
                                                  ||..    ++++++|++|+|++|+++|                 .+|+.++ 
T Consensus       412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~----l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f  487 (876)
T 4ecn_A          412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKA----IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW  487 (876)
T ss_dssp             TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG----GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             ccccccccccccchhhceeccccCcccchhHH----HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence                                        5555    9999999999999999998                 4999988 


Q ss_pred             -CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC-Cch-hhHHHHHHHH
Q 028394          153 -GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY-FTE-QLEVLIRDLA  204 (209)
Q Consensus       153 -~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~-~~~-~~p~~~~~L~  204 (209)
                       ++++|++|+|++|++.|.+|..++++++|.. ..+.+|. ++| .+|..++.++
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~-L~Ls~N~~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQS-LNIACNRGISAAQLKADWTRLA  541 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE-EECTTCTTSCHHHHHHHHHHHH
T ss_pred             ccCCCCCEEECcCCCCCccChHHHhCCCCCCE-EECcCCCCcccccchHHHHhhh
Confidence             9999999999999999999999999999986 8889998 999 9999999887

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.5e-22  Score=170.01  Aligned_cols=168  Identities=15%  Similarity=0.157  Sum_probs=123.7

Q ss_pred             CCCcHHHHHHHHHHHhhCC-CCCCCCCCCCC-CCCCCCCccccceEEcC--------CCCcEEEEEcCCCCCCccccccc
Q 028394           25 EGCLEQERYALLQLRHFFN-DDQCLQNCWVD-DENYSDCCQWERVECND--------TTGRVIKLDLRDTRNWESAEWYM   94 (209)
Q Consensus        25 ~~~~~~~~~aL~~~~~~~~-~~~~~l~~W~~-~~~~~~~C~W~gv~C~~--------~~~~v~~L~L~~~~l~~~~~~~~   94 (209)
                      .++..+|++||++||..+. ++.++...|.. .....++|.|.|+.|..        ...+|+.|+|+++.++.++    
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp----   97 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP----   97 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCC----
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcC----
Confidence            4455678999999999884 66667778830 02267899999999952        2478999999999987553    


Q ss_pred             CCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCC
Q 028394           95 NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK  174 (209)
Q Consensus        95 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~  174 (209)
                        ..+..+++|++|+|++|.++ .+|..    ++++++|++|+|++|+++ .+|..++++++|++|++++|++.|.+|..
T Consensus        98 --~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~  169 (328)
T 4fcg_A           98 --DQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP  169 (328)
T ss_dssp             --SCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred             --hhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh
Confidence              34666888888888888888 77877    788888888888888887 77877888888888888888888888877


Q ss_pred             Ccc---------cCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          175 GKY---------ASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       175 ~~~---------l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++.         +.+|.. ..+++|.++ .+|..++.++++
T Consensus       170 ~~~~~~~~~~~~l~~L~~-L~L~~n~l~-~lp~~l~~l~~L  208 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQS-LRLEWTGIR-SLPASIANLQNL  208 (328)
T ss_dssp             SEEEC-CCCEEESTTCCE-EEEEEECCC-CCCGGGGGCTTC
T ss_pred             HhhccchhhhccCCCCCE-EECcCCCcC-cchHhhcCCCCC
Confidence            654         666553 556666666 555555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.7e-17  Score=128.99  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=112.1

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|.|..+.|...         ...++.|++++|.+..+..    ...+..+++|++|+|++|.+++..|..    +.++
T Consensus         6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l   77 (192)
T 1w8a_A            6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGA   77 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCc
Confidence            3478999999741         1378999999999875532    234788999999999999999888887    9999


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      ++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+.+|.. ..+.+|.+++..+
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~c~c~  143 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-LNLASNPFNCNCH  143 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE-EECTTCCBCCSGG
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE-EEeCCCCccCcCc
Confidence            99999999999999988888999999999999999999999999999999885 8889999997654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=5.9e-18  Score=135.05  Aligned_cols=125  Identities=18%  Similarity=0.220  Sum_probs=67.5

Q ss_pred             CCCCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC
Q 028394           58 YSDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS  128 (209)
Q Consensus        58 ~~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  128 (209)
                      ....|+|.+|.|...         ...++.|+|++|.+..+.     +..+..+++|++|+|++|.+++ +|..   .+.
T Consensus        15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~N~l~~-i~~~---~~~   85 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLE-----PGVFDSLINLKELYLGSNQLGA-LPVG---VFD   85 (229)
T ss_dssp             TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCC-CCTT---TTT
T ss_pred             CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccC-----HHHhhCccCCcEEECCCCCCCC-cChh---hcc
Confidence            578899999999751         246888999999887542     2334455555555555555542 2221   134


Q ss_pred             CCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       129 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      .+++|++|+|++|++++..+..|..+++|++|+|++|+++ .||..+..+.+|.. ..+.+|.++
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~-L~L~~N~l~  148 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH-LALDQNQLK  148 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE-EECCSSCCC
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE-EECCCCcCC
Confidence            4555555555555555433334444445555555555444 44444444444432 333344333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=132.10  Aligned_cols=137  Identities=18%  Similarity=0.189  Sum_probs=81.2

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|.|..+.|...         ...++.|+|++|.++.+..    ...+..+++|++|+|++|.+++..|..    +.++
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~----~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l   80 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEA----TGIFKKLPQLRKINFSNNKITDIEEGA----FEGA   80 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECC----CCCGGGCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCc----hhhhccCCCCCEEECCCCcCCEECHHH----hCCC
Confidence            3478888888641         1356789999998875422    233555666666666666666544444    5566


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      ++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..|..+..+++
T Consensus        81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~  154 (220)
T 2v70_A           81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL-LSLYDNQITTVAPGAFDTLHS  154 (220)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE-EECTTSCCCCBCTTTTTTCTT
T ss_pred             CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE-EECCCCcCCEECHHHhcCCCC
Confidence            66666666666666555555566666666666666666555555555555543 555555555554544444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=4.4e-17  Score=127.58  Aligned_cols=134  Identities=19%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             CCCccccceEEcCC---------CCcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEc
Q 028394           59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYL  110 (209)
Q Consensus        59 ~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~L  110 (209)
                      ...|.|.+|.|...         ..+++.|++++|.++.+...                   .+++..+..+++|++|++
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            34589999999751         23688999999987643321                   011122334444555555


Q ss_pred             cCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCC
Q 028394          111 IGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGS  190 (209)
Q Consensus       111 s~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n  190 (209)
                      ++|.+++..+..    +..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+.+|.. ..+.+|
T Consensus        84 s~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N  158 (208)
T 2o6s_A           84 STNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY-IWLHDN  158 (208)
T ss_dssp             CSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSC
T ss_pred             CCCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE-EEecCC
Confidence            555444322222    445555555555555555444444555555555555555555433333455555443 455555


Q ss_pred             CCchhhH
Q 028394          191 YFTEQLE  197 (209)
Q Consensus       191 ~~~~~~p  197 (209)
                      .+.+..|
T Consensus       159 ~~~~~~~  165 (208)
T 2o6s_A          159 PWDCTCP  165 (208)
T ss_dssp             CBCCCTT
T ss_pred             CeecCCC
Confidence            5555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=5.4e-17  Score=128.75  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|.|..|.|...         ...++.|++++|.++.+.     +..|..+++|++|+|++|.+++..|..    +.++
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-----~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~~~l   79 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-----PGAFSPYKKLRRIDLSNNQISELAPDA----FQGL   79 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECCSSCCCEECTTT----TTTC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-----HhHhhCCCCCCEEECCCCcCCCcCHHH----hhCC
Confidence            3478999999741         136899999999887543     334666777777777777777655665    6666


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      ++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..++.+..++
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL-LSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE-EECCCCcCCEECHHHHhCCC
Confidence            67777777777766444444566666666666666666666666666666553 55556666554444444333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=3.3e-16  Score=119.64  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=106.1

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|+|.++.|...         ...++.|++++|.+..+.     +..+..+++|++|++++|.+++..+..    +..+
T Consensus         5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l   75 (177)
T 2o6r_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL   75 (177)
T ss_dssp             CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred             CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeC-----HHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence            4588999999751         246899999999887443     455788999999999999999655554    7899


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      ++|++|++++|++++..|..++.+++|++|++++|++++-.|..+..+.+|.. ..+.+|.+++..|
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~~~~~  141 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCBCCCHH
T ss_pred             CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE-EEecCCCeeccCc
Confidence            99999999999999877777899999999999999999544444577888875 8889999998776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.6e-16  Score=128.09  Aligned_cols=125  Identities=20%  Similarity=0.133  Sum_probs=62.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc--------------------chhcCCCCCCc
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG--------------------LDTLSRLNNLK  134 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~l~~L~  134 (209)
                      .++.|++++|.+..+.     +..+..+++|++|++++|.+++..|...                    +..+..+++|+
T Consensus        36 ~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (251)
T 3m19_A           36 DTEKLDLQSTGLATLS-----DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD  110 (251)
T ss_dssp             TCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEccCCCcCccC-----HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence            4667777777765332     2234445555555555555554333330                    00144555555


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      +|+|++|++++..|..++.+++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..+..+..+++
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT-LSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTT
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE-EECCCCcCCccCHHHHhCCCC
Confidence            5555555555444444455555555555555555433334555555543 555566665544444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.64  E-value=2e-16  Score=128.76  Aligned_cols=97  Identities=23%  Similarity=0.254  Sum_probs=45.4

Q ss_pred             EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (209)
Q Consensus        76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  155 (209)
                      ++.|+++++.+..+.     +..+..+++|++|++++|.++. +|..   .+..+++|++|++++|++++..+..+..++
T Consensus        39 l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLP-----SKAFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             CSEEECCSSCCSCCC-----TTSSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             CCEEECcCCCCCeeC-----HHHhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            455555555544322     2235555666666666666552 3332   134445555555555555443333444444


Q ss_pred             CCCEEeccCCccccccCCCCcccCCC
Q 028394          156 SLRNLSLIGNRLIGSIDIKGKYASTL  181 (209)
Q Consensus       156 ~L~~L~L~~N~l~G~iP~~~~~l~~l  181 (209)
                      +|++|++++|++++..|..+..+.+|
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCC
Confidence            44444444444444333333444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.62  E-value=3.2e-16  Score=144.89  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=88.3

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      ..+..++.|++|||++|+++|.+|..    ++++++|++|+|++|+++|.+|..++++++|++|||++|+++|.||..++
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCBSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             hhhhccccccEEECcCCcccccCCHH----HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence            34667889999999999999999988    99999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCccCCCCCchhhHHH
Q 028394          177 YASTLFPCPIFCGSYFTEQLEVL  199 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~~~p~~  199 (209)
                      ++++|.. ..+++|+++|.||..
T Consensus       702 ~l~~L~~-L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          702 ALTMLTE-IDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GCCCCSE-EECCSSEEEEECCSS
T ss_pred             CCCCCCE-EECcCCcccccCCCc
Confidence            9999885 888999999998853

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.61  E-value=2e-16  Score=132.69  Aligned_cols=104  Identities=18%  Similarity=0.138  Sum_probs=89.7

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+..+++|++|++++|.+++ +|+.    +..+++|++|++++|++.+.+|..++.+++|++|++++|++.+.+|..+++
T Consensus       201 ~l~~l~~L~~L~L~~N~l~~-l~~~----l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLSA-LGPA----IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCCC-CCGG----GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             hhcCCCCCCEEEccCCCCCc-Cchh----hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            46778888888888888884 6666    888999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          178 ASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      +.+|.. ..+.+|++.+.+|+.++.|+++.
T Consensus       276 l~~L~~-L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          276 LTQLEK-LDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             CTTCCE-EECTTCTTCCCCCGGGGGSCTTC
T ss_pred             CCCCCE-EeCCCCCchhhccHHHhhccCce
Confidence            988875 88889999999999888887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=115.99  Aligned_cols=124  Identities=23%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|.|..+.|...         ...++.|++++|.++.+.      ..+..+++|++|+|++|.+++..|..    |.++
T Consensus         8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l   77 (193)
T 2wfh_A            8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP------KELSNYKHLTLIDLSNNRISTLSNQS----FSNM   77 (193)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC------GGGGGCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred             CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH------HHhhcccCCCEEECCCCcCCEeCHhH----ccCC
Confidence            3477888888641         246899999999987543      45888999999999999999766666    9999


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      ++|++|+|++|++++..|..|..+++|++|+|++|++++-.+..+..+.+|.. ..+.+|.+..
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~C  140 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH-LAIGANPLYC  140 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE-EECCSSCEEC
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE-EEeCCCCeec
Confidence            99999999999999888889999999999999999999654556888888875 7788888874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=5.1e-16  Score=137.48  Aligned_cols=133  Identities=22%  Similarity=0.218  Sum_probs=105.2

Q ss_pred             CccccceEEcCC-----------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCC
Q 028394           61 CCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSR  129 (209)
Q Consensus        61 ~C~W~gv~C~~~-----------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  129 (209)
                      .|.|.|+ |+..           ..+++.|++++|.++.+.     +..+..+++|++|++++|.+++..|..    +.+
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----ccc
Confidence            5899998 8631           137899999999987543     456888999999999999999877777    899


Q ss_pred             CCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhH-HHHHHHH
Q 028394          130 LNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLE-VLIRDLA  204 (209)
Q Consensus       130 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p-~~~~~L~  204 (209)
                      +++|++|++++|++++..|..++++++|++|++++|++++ .+|..++++.+|.. ..+.+|.+.+.+| ..+..++
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT-LRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCCEECTTTTTTCC
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE-EECCCCccccccCHhhhhccc
Confidence            9999999999999998888889999999999999999987 57788888887764 5666666544443 3344333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.60  E-value=1.2e-15  Score=136.49  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=79.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      ..++.|||++|.++.+.     +..|.++++|++|+|++|.+++..|..    |.++++|++|+|++|++++..|..|.+
T Consensus        52 ~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhH----hcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            46899999999998554     345677777777777777777544444    677777777777777777555556677


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLA  204 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~  204 (209)
                      +++|++|+|++|++++-.|..++++++|.. ..+.+|.+++ .+|..++.++
T Consensus       123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~-L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A          123 LSSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCCCCCCCGGGGGCT
T ss_pred             CCCCCEEECCCCcCCCCChhhhhcCcccCe-eccccCccccCCCchhhccch
Confidence            777777777777776544445666666553 4555555543 3444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=5.8e-16  Score=134.09  Aligned_cols=131  Identities=22%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             CCCccccc--eEEcCCC--------CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC
Q 028394           59 SDCCQWER--VECNDTT--------GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS  128 (209)
Q Consensus        59 ~~~C~W~g--v~C~~~~--------~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  128 (209)
                      ...|.|.+  |.|....        .+++.|+|++|.++.+.     +..+.++++|++|++++|.+.+.+|+.   .+.
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~   76 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELN-----ETSFSRLQDLQFLKVEQQTPGLVIRNN---TFR   76 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEEC-----TTTTSSCTTCCEEECCCCSTTCEECTT---TTT
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCC-----hhHhccCccccEEECcCCcccceECcc---ccc
Confidence            34566666  8886521        46899999999887442     234555666666666666665555432   255


Q ss_pred             CCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCC--CcccCCCCCCCccCCCCCchhhHH
Q 028394          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK--GKYASTLFPCPIFCGSYFTEQLEV  198 (209)
Q Consensus       129 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~--~~~l~~l~~~~~~~~n~~~~~~p~  198 (209)
                      ++++|++|++++|++++..|..++++++|++|++++|++++.+|..  ++.+.+|.. ..+.+|.+++..|.
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~  147 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM-LVLRDNNIKKIQPA  147 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE-EECCSSBCCSCCCC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE-EECCCCccCccCcc
Confidence            5556666666666665555555555556666666666555544443  555555543 44555555544443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=5.1e-15  Score=117.30  Aligned_cols=114  Identities=19%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.++.+.     +..|..+++|++|+|++|.+++..|..    +..+++|++|+|++|++++..|..|..
T Consensus        57 ~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~  127 (220)
T 2v70_A           57 PQLRKINFSNNKITDIE-----EGAFEGASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIG  127 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred             CCCCEEECCCCcCCEEC-----HHHhCCCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCC
Confidence            57899999999987543     456888999999999999999776666    899999999999999999998999999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      +++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++..+
T Consensus       128 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~c~c~  170 (220)
T 2v70_A          128 LSSVRLLSLYDNQITTVAPGAFDTLHSLST-LNLLANPFNCNCY  170 (220)
T ss_dssp             CTTCSEEECTTSCCCCBCTTTTTTCTTCCE-EECCSCCEECSGG
T ss_pred             CccCCEEECCCCcCCEECHHHhcCCCCCCE-EEecCcCCcCCCc
Confidence            999999999999999988999999999885 8889999986543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.7e-15  Score=111.36  Aligned_cols=121  Identities=23%  Similarity=0.209  Sum_probs=101.8

Q ss_pred             CcEEEEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394           74 GRVIKLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l  151 (209)
                      .+++.|+++++.+.  .+      +..+..+++|++|++++|.+++.  ..    ++.+++|++|++++|++++.+|..+
T Consensus        17 ~~l~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKL------EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             GGCSEEECTTCBCBTTBC------CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred             ccCeEEEccCCcCChhHH------HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHHh
Confidence            47889999999876  33      33578899999999999999865  44    8999999999999999998899999


Q ss_pred             cCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhH---HHHHHHHhhh
Q 028394          152 GGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLE---VLIRDLARFL  207 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p---~~~~~L~~~~  207 (209)
                      +.+++|++|++++|++++ ..|..+..+.+|.. ..+.+|.+++..+   ..+..++++.
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS-LDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE-EECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE-EeCcCCcccchHHHHHHHHHHCCCcc
Confidence            999999999999999997 35688899999885 8888999987666   5677776653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=2.1e-15  Score=135.08  Aligned_cols=128  Identities=16%  Similarity=0.112  Sum_probs=73.4

Q ss_pred             CcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394           74 GRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~  134 (209)
                      .+++.|++++|.+..+...                   .+.+..|.++++|++|++++|.+++..|..    ++++++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~  107 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS----FSGLTSLE  107 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS----STTCTTCC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh----cCCcccCC
Confidence            4688899998887643320                   011223445555555555555555444444    55555555


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +|++++|++++..|..++++++|++|++++|++++ .+|..++++++|.. ..+.+|.+++..|..++.++++
T Consensus       108 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH-VDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             EEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE-EECCSSCCCEECTTTTHHHHHC
T ss_pred             EEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE-EEccCCcceecChhhhhhhhcc
Confidence            55555555554444555566666666666666654 55666666666654 5566666666656555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.56  E-value=4e-16  Score=129.81  Aligned_cols=120  Identities=20%  Similarity=0.260  Sum_probs=83.2

Q ss_pred             CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      .+++.|++++ |.+...     .+..+.++++|++|++++|.++|.+|..    +.++++|++|++++|++++.+|..++
T Consensus        76 ~~L~~L~L~~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGP-----IPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             TTCSEEEEEEETTEESC-----CCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCCCeeeCCCCCccccc-----CChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHh
Confidence            4678899984 665421     1334667777777777777777777776    77777777777777777777777777


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccC-CCCCCCccCCCCCchhhHHHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYAS-TLFPCPIFCGSYFTEQLEVLIRDL  203 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~-~l~~~~~~~~n~~~~~~p~~~~~L  203 (209)
                      .+++|++|++++|+++|.+|..++++. .|. ...+.+|.+++.+|..+..+
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~-~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFT-SMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCC-EEECCSSEEEEECCGGGGGC
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCc-EEECcCCeeeccCChHHhCC
Confidence            777777777777777777777777766 444 36666666666666555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=2.8e-16  Score=144.82  Aligned_cols=98  Identities=21%  Similarity=0.281  Sum_probs=86.9

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|++|+|++|.|+ .+|..    ++++++|++|+|++|+|+ .+|..|+++++|++|+|++|.|+ .||.+++++
T Consensus       243 ~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l  315 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL  315 (727)
T ss_dssp             GGGCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC
T ss_pred             hcCCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC
Confidence            446788888888888888 78877    899999999999999999 88999999999999999999997 899999999


Q ss_pred             CCCCCCCccCCCCCchhhHHHHHHHH
Q 028394          179 STLFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      .+|.. +.+++|.+++.+|+.+..+.
T Consensus       316 ~~L~~-L~L~~N~l~~~~p~~~~~~~  340 (727)
T 4b8c_D          316 CNLQF-LGVEGNPLEKQFLKILTEKS  340 (727)
T ss_dssp             TTCCC-EECTTSCCCSHHHHHHHHHH
T ss_pred             CCccE-EeCCCCccCCCChHHHhhcc
Confidence            99885 88999999999999987754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=7.5e-15  Score=118.18  Aligned_cols=111  Identities=24%  Similarity=0.264  Sum_probs=89.6

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|++++|.++.+     ++..+..+++|++|+|++|.+++..+..    +..+++|++|+|++|++++..|..++.+
T Consensus        84 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  154 (251)
T 3m19_A           84 ELGTLGLANNQLASL-----PLGVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKL  154 (251)
T ss_dssp             TCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCEEECCCCccccc-----ChhHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcC
Confidence            455555555554422     2345678889999999999998655544    7899999999999999997777789999


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      ++|++|+|++|++++..|..+..+.+|.. ..+.+|.+++.
T Consensus       155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~c~  194 (251)
T 3m19_A          155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQT-ITLFGNQFDCS  194 (251)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSCCBCTT
T ss_pred             cCCCEEECCCCcCCccCHHHHhCCCCCCE-EEeeCCceeCC
Confidence            99999999999999877778888988875 88899999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.54  E-value=1e-14  Score=134.37  Aligned_cols=167  Identities=18%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhhCCCCCC-CCCCCCCCCCCCCCccccceEEcC----------------CCCcEEEEEcCCCCCCcccc
Q 028394           29 EQERYALLQLRHFFNDDQC-LQNCWVDDENYSDCCQWERVECND----------------TTGRVIKLDLRDTRNWESAE   91 (209)
Q Consensus        29 ~~~~~aL~~~~~~~~~~~~-~l~~W~~~~~~~~~C~W~gv~C~~----------------~~~~v~~L~L~~~~l~~~~~   91 (209)
                      ..+++++++++.+.....+ ....|.  ......+.|.++.+..                ....+..++|+.+.+..+..
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPT--GDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCc--CCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence            3456778887766542221 223452  2233345565543321                01234455555555432210


Q ss_pred             ----cccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcc
Q 028394           92 ----WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRL  167 (209)
Q Consensus        92 ----~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l  167 (209)
                          +.+.+..+..++.|+.|+|++|.+. .+|..    +..+++|++|+|++|+++ .+|..|+++++|++|+|++|+|
T Consensus       209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN----IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGG----GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccceecChhhhccCCCCcEEECCCCCCC-CCChh----hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence                1122444666677777777777776 56665    666777777777777777 6777777777777777777777


Q ss_pred             ccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          168 IGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       168 ~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      + .||.+++++.+|.. +.+.+|.++ .||..|+.|+++
T Consensus       283 ~-~lp~~~~~l~~L~~-L~L~~N~l~-~lp~~~~~l~~L  318 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKY-FYFFDNMVT-TLPWEFGNLCNL  318 (727)
T ss_dssp             S-SCCSSGGGGTTCSE-EECCSSCCC-CCCSSTTSCTTC
T ss_pred             C-ccChhhcCCCCCCE-EECCCCCCC-ccChhhhcCCCc
Confidence            7 67777777777664 666666665 566656655554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=9e-15  Score=113.46  Aligned_cols=119  Identities=15%  Similarity=0.070  Sum_probs=101.1

Q ss_pred             EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (209)
Q Consensus        77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  156 (209)
                      +.+++++++++.++.      .+.  .++++|++++|.+++..+..   .+..+++|++|+|++|++++..|..|+++++
T Consensus        11 ~~l~~s~~~l~~ip~------~~~--~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR------DIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCCS------CCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred             CEEEcCCCCcCcCcc------CCC--CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCccc
Confidence            578999999876543      222  38999999999998765542   1789999999999999999999999999999


Q ss_pred             CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      |++|+|++|++++..|..+..+.+|.. ..+.+|.+++.+|+.+..++++.
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTCC
T ss_pred             CCEEECCCCcCCccCHHHhcCCCCCCE-EECCCCcCCeeCHHHhhcCCCCC
Confidence            999999999999988888999999885 88999999998888877766553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=7.7e-15  Score=123.57  Aligned_cols=135  Identities=27%  Similarity=0.252  Sum_probs=100.4

Q ss_pred             CCCCccccceEEcCC-----------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchh
Q 028394           58 YSDCCQWERVECNDT-----------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDT  126 (209)
Q Consensus        58 ~~~~C~W~gv~C~~~-----------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~  126 (209)
                      ...+|.|.|+ |+..           ..+++.|++++|.++.+.     +..+.++++|++|++++|.+++..|..    
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----   95 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDS----   95 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHhh----
Confidence            4677899988 7531           237899999999987543     346788999999999999999776776    


Q ss_pred             cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCC-CchhhHHHHHHH
Q 028394          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSY-FTEQLEVLIRDL  203 (209)
Q Consensus       127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~-~~~~~p~~~~~L  203 (209)
                      +.++++|++|++++|++++..+..++++++|++|++++|+++ .+|.  .+.++.+|.. ..+.+|+ +++..|..+..+
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI-LRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE-EEEEESSSCCEECTTTTTTC
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE-EECCCCccccccCHHHccCC
Confidence            889999999999999998665566889999999999999998 5665  6777777764 5555553 333334444443


Q ss_pred             H
Q 028394          204 A  204 (209)
Q Consensus       204 ~  204 (209)
                      +
T Consensus       174 ~  174 (353)
T 2z80_A          174 T  174 (353)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.4e-14  Score=117.97  Aligned_cols=94  Identities=21%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..++.+++|++|++++|++++..|..+.++
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL  204 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCC
Confidence            445555555555555555433333    4566666666666666665555555666666666666666666555555666


Q ss_pred             CCCCCCCccCCCCCchhhH
Q 028394          179 STLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p  197 (209)
                      .+|.. ..+.+|.+.+..|
T Consensus       205 ~~L~~-L~l~~N~~~~~~~  222 (272)
T 3rfs_A          205 TSLQY-IWLHDNPWDCTCP  222 (272)
T ss_dssp             TTCCE-EECCSSCBCCCTT
T ss_pred             cCCCE-EEccCCCccccCc
Confidence            66553 5566666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=1.8e-14  Score=117.20  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCCc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKGK  176 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~~  176 (209)
                      .+..+++|++|++++|.+++..|..    +.++++|++|++++|++++..+..++++++|++|++++|++++ .+|..+.
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           71 AYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             HccCCcCCCEEECCCCccCccChhh----hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence            4555666666666666666555454    6677777777777777776555567777777777777777775 4677777


Q ss_pred             ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          177 YASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++++|.. ..+.+|.+++..+..+..++++
T Consensus       147 ~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          147 NLTNLEH-LDLSSNKIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             GCTTCCE-EECCSSCCCEECGGGGHHHHTC
T ss_pred             cCCCCCE-EECCCCCCCcCCHHHhhhhhhc
Confidence            7777764 6777787777666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=8.4e-14  Score=106.54  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=86.8

Q ss_pred             EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (209)
Q Consensus        77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  156 (209)
                      +.++++++.+..++.      .+  .++|++|+|++|.+++..|..    +.++++|++|+|++|++++..+..|.++++
T Consensus        15 ~~l~~~~n~l~~iP~------~~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLASVPA------GI--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCccCC------Cc--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            468888888875532      22  278999999999999877777    899999999999999999766666789999


Q ss_pred             CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394          157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      |++|+|++|+|++-.|..+..+.+|.. ..+.+|.+...
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~-L~L~~N~~~c~  120 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTH-IYLYNNPWDCE  120 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSE-EECCSSCBCTT
T ss_pred             hhEEECCCCccceeCHHHhccccCCCE-EEeCCCCcccc
Confidence            999999999999644445888888875 78889988854

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=1.5e-14  Score=109.36  Aligned_cols=120  Identities=23%  Similarity=0.193  Sum_probs=86.3

Q ss_pred             CcEEEEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394           74 GRVIKLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l  151 (209)
                      .+++.|+++++.+.  .+      +..+..+++|++|++++|.+++.  ..    +..+++|++|++++|++++.+|..+
T Consensus        24 ~~L~~L~l~~n~l~~~~i------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKI------EGLTAEFVNLEFLSLINVGLISV--SN----LPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             TSCSEEECCSCBCBTTBC------SSCCGGGGGCCEEEEESSCCCCC--SS----CCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             ccCCEEECCCCCCChhhH------HHHHHhCCCCCEEeCcCCCCCCh--hh----hccCCCCCEEECcCCcCchHHHHHH
Confidence            46788888888765  33      23366788888888888888754  44    7888888888888888887778777


Q ss_pred             cCCCCCCEEeccCCccccc-cCCCCcccCCCCCCCccCCCCCchhhH---HHHHHHHhh
Q 028394          152 GGLSSLRNLSLIGNRLIGS-IDIKGKYASTLFPCPIFCGSYFTEQLE---VLIRDLARF  206 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~G~-iP~~~~~l~~l~~~~~~~~n~~~~~~p---~~~~~L~~~  206 (209)
                      .++++|++|++++|++++- .+..+..+.+|.. ..+.+|.+++..+   ..+..++++
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~-L~l~~N~l~~~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS-LDLFNCEVTNLNDYRESVFKLLPQL  149 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE-EECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCCCCCE-EEeeCCcCcchHHHHHHHHHhCccC
Confidence            7788888888888888752 2266777777764 6777887776554   355544443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.1e-13  Score=105.45  Aligned_cols=105  Identities=20%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCC
Q 028394           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (209)
Q Consensus        78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L  157 (209)
                      .++++++.++.++.      .+  .++|++|+|++|.+++..|..    +.++++|++|+|++|++++..|..|.++++|
T Consensus        13 ~l~~s~n~l~~ip~------~~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L   80 (170)
T 3g39_A           13 TVDCSGKSLASVPT------GI--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL   80 (170)
T ss_dssp             EEECTTSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEeCCCCcCccCc------cC--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence            45555666654432      12  267788888888888766666    7788888888888888886666667788888


Q ss_pred             CEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394          158 RNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       158 ~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      ++|+|++|+|++-.|..+.++.+|.. ..+.+|.++..
T Consensus        81 ~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~c~  117 (170)
T 3g39_A           81 TQLSLNDNQLKSIPRGAFDNLKSLTH-IWLLNNPWDCA  117 (170)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCBCTT
T ss_pred             CEEECCCCccCEeCHHHhcCCCCCCE-EEeCCCCCCCC
Confidence            88888888888655556777777764 67777777644

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.50  E-value=7.2e-14  Score=110.62  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=96.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.+..+.     +..|..+++|++|+|++|.+++ +|..   .+..+++|++|+|++|++++..|..|..
T Consensus        56 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~  126 (220)
T 2v9t_B           56 KKLRRIDLSNNQISELA-----PDAFQGLRSLNSLVLYGNKITE-LPKS---LFEGLFSLQLLLLNANKINCLRVDAFQD  126 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-----TTTTTTCSSCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEECCCCcCCCcC-----HHHhhCCcCCCEEECCCCcCCc-cCHh---HccCCCCCCEEECCCCCCCEeCHHHcCC
Confidence            57899999999987543     4568899999999999999994 5544   2688999999999999999998999999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|++|+|++|++++..|..+..+.+|.. ..+.+|.+..
T Consensus       127 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~N~~~c  166 (220)
T 2v9t_B          127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQT-MHLAQNPFIC  166 (220)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCEEC
T ss_pred             CCCCCEEECCCCcCCEECHHHHhCCCCCCE-EEeCCCCcCC
Confidence            999999999999999877777888888875 7788888874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=3.3e-14  Score=120.46  Aligned_cols=111  Identities=20%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             ccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (209)
Q Consensus        62 C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~  131 (209)
                      |.+..+.|...         ...++.|+|++|.++.+..     ..+. .+++|++|+|++|.+++..|..    +.+++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~-----~~~~~~l~~L~~L~L~~N~i~~i~~~~----~~~l~   88 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRA-----EWTPTRLTNLHSLLLSHNHLNFISSEA----FVPVP   88 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECT-----TSSSSCCTTCCEEECCSSCCCEECTTT----TTTCT
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccCh-----hhhhhcccccCEEECCCCcCCccChhh----ccCCC
Confidence            67888888641         1347789999998865432     2233 4555555555555555433333    44444


Q ss_pred             CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCC
Q 028394          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL  181 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l  181 (209)
                      +|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+.+|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            44444444444443333344444444444444444444334444433333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=7.4e-14  Score=106.33  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=86.9

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (209)
Q Consensus        61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~  131 (209)
                      .|.|..+.|...         ...++.|+|++|.++.+.     +..|..+++|++|+|++|++++..|..    +..++
T Consensus         8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~   78 (170)
T 3g39_A            8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLT   78 (170)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred             CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhh----ccCCC
Confidence            378999999641         246889999999988543     456888999999999999999655544    78999


Q ss_pred             CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccC
Q 028394          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID  172 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP  172 (209)
                      +|++|+|++|++++..|..|.++++|++|+|++|.+++..+
T Consensus        79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            99999999999997777789999999999999999987654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=2.4e-14  Score=116.56  Aligned_cols=122  Identities=17%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|++++|.++.+     ++..+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..++.+
T Consensus        86 ~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           86 NLTYLILTGNQLQSL-----PNGVFDKLTNLKELVLVENQLQSLPDGV----FDKLTNLTYLNLAHNQLQSLPKGVFDKL  156 (272)
T ss_dssp             TCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCEEECCCCccCcc-----ChhHhcCCcCCCEEECCCCcCCccCHHH----hccCCCCCEEECCCCccCccCHHHhccC
Confidence            455556665555432     2344677888888888888888665555    7888888888888888887777777888


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++|++|++++|++++..|..++.+.+|.. ..+.+|.+++..|..+..++++
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L  207 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKD-LRLYQNQLKSVPDGVFDRLTSL  207 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTC
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCE-EECCCCcCCccCHHHHhCCcCC
Confidence            88899999888888766666778888775 7788888888777666655554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=8.8e-14  Score=108.66  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.++.+     ++..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+..
T Consensus        76 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhcc
Confidence            4577777777776633     2445788999999999999999765555    789999999999999999777777899


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      +++|++|++++|.+.+..|.       +. ......|.++|.+|..++.+.
T Consensus       147 l~~L~~L~l~~N~~~~~~~~-------l~-~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDCTCPG-------IR-YLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTCCEEECCSCCBCCCTTT-------TH-HHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCccEEEecCCCeecCCCC-------HH-HHHHHHHhCCceeeccCcccc
Confidence            99999999999999987763       22 244567778888887666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.49  E-value=3.8e-14  Score=126.61  Aligned_cols=123  Identities=17%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.++.+.     +..|.++++|++|+|++|++++..|..    |.++++|++|+|++|++++..|..|++
T Consensus        76 ~~L~~L~Ls~N~i~~i~-----~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~  146 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH  146 (635)
T ss_dssp             TTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             CCCCEEECCCCcCCCcC-----hhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhc
Confidence            46889999999987543     456889999999999999999654445    899999999999999999777778999


Q ss_pred             CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|++++ .+|..++.+++|.. ..+.+|.+++-.|..+..|+++
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~-L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEH-LDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCE-EECCSSCCCEECGGGGHHHHTC
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhh-hcccCccccccccccccchhhh
Confidence            9999999999999975 67889999999885 8889999999888888887764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.49  E-value=5.6e-14  Score=114.78  Aligned_cols=105  Identities=22%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      ..+..+++|++|++++|.+++..+..    +..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus       123 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  198 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR  198 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             hHhhCCcCCCEEECCCCcccccCHhH----hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence            34556666777777777666444444    66677777777777777755555577777777777777777777677777


Q ss_pred             ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          177 YASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++.+|.. ..+.+|.+++..+..+..++++
T Consensus       199 ~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          199 DLGRLMT-LYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TCTTCCE-EECCSSCCSCCCHHHHTTCTTC
T ss_pred             CcccccE-eeCCCCcCCcCCHHHcccCccc
Confidence            7777664 6666777776655556555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.49  E-value=7.4e-15  Score=121.14  Aligned_cols=138  Identities=18%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             CCCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceecc------------
Q 028394           59 SDCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG------------  117 (209)
Q Consensus        59 ~~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g------------  117 (209)
                      ...|.|.+|.|...         ..+++.|+++++.++.+.     ...+..+++|++|++++|.++.            
T Consensus         4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~   78 (306)
T 2z66_A            4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT   78 (306)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS
T ss_pred             CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccC-----HhHhhccccCCEEECCCCccCcccCccccccccc
Confidence            34489999999751         147899999999887543     2334556666666666665542            


Q ss_pred             -------------ccCCCcchhcCCCCCCcEEecccCCCCCcch-hhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394          118 -------------CVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP  183 (209)
Q Consensus       118 -------------~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~  183 (209)
                                   .+|..    +..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|..+..+.+|..
T Consensus        79 ~L~~L~Ls~n~i~~l~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           79 SLKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             CCCEEECCSCSEEEEEEE----EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccCEEECCCCccccChhh----cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence                         23333    5666666777777776664433 45666777777777777777666666666666664


Q ss_pred             CCccCCCCCch-hhHHHHHHHHhh
Q 028394          184 CPIFCGSYFTE-QLEVLIRDLARF  206 (209)
Q Consensus       184 ~~~~~~n~~~~-~~p~~~~~L~~~  206 (209)
                       ..+.+|.+++ .+|..+..++++
T Consensus       155 -L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A          155 -LKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             -EECTTCEEGGGEECSCCTTCTTC
T ss_pred             -EECCCCccccccchhHHhhCcCC
Confidence             6666776665 455555544443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=2.4e-14  Score=124.91  Aligned_cols=110  Identities=25%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (209)
Q Consensus        64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~  134 (209)
                      |..|.|...         ..+++.|+|++|.++.+.     +..|..+++|++|+|++|.+++..|..    +.++++|+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~   83 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR   83 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence            677888641         246788999999887543     234555666666666666666555554    55555555


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCC
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLF  182 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~  182 (209)
                      +|+|++|++++..+..|+++++|++|+|++|++++..|..+.++.+|.
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            555555555543333455555555555555555555555554444443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.49  E-value=1.3e-13  Score=109.65  Aligned_cols=113  Identities=20%  Similarity=0.168  Sum_probs=97.2

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.+..+.     +..+..+++|++|+|++|.+++..+..    +..+++|++|+|++|+++ .+|..+..
T Consensus        64 ~~L~~L~L~~N~l~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~  133 (229)
T 3e6j_A           64 INLKELYLGSNQLGALP-----VGVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIER  133 (229)
T ss_dssp             TTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGG
T ss_pred             cCCcEEECCCCCCCCcC-----hhhcccCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCccccc
Confidence            57999999999987543     456788999999999999999655555    789999999999999999 88999999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      +++|++|+|++|++++-.+..+..+.+|.. ..+.+|.+....+
T Consensus       134 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~~~c~c~  176 (229)
T 3e6j_A          134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTH-AYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECTTSCBCTTBG
T ss_pred             CCCCCEEECCCCcCCccCHHHHhCCCCCCE-EEeeCCCccCCcc
Confidence            999999999999999665667888888875 7888999986543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.48  E-value=3.8e-14  Score=115.80  Aligned_cols=116  Identities=22%  Similarity=0.163  Sum_probs=56.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCC---------------------cchhcCCCCC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENE---------------------GLDTLSRLNN  132 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~---------------------~~~~~~~l~~  132 (209)
                      .+++.|+++++.+..+.     +..+..+++|++|++++|.+++..|..                     .+..+..+++
T Consensus        32 ~~l~~L~l~~n~i~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~  106 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVP-----AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (285)
T ss_dssp             TTCSEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCceEEEeeCCcCCccC-----HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence            35677777777765432     223444445555555555544433333                     0001444555


Q ss_pred             CcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchh
Q 028394          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       133 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      |++|++++|++++..|..+.++++|++|++++|++++..+..+.++.+|.. ..+.+|.+++.
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~  168 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH-LFLHGNRISSV  168 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCCEE
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE-EECCCCccccc
Confidence            555555555555444444555555555555555555433333444554443 44455555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.48  E-value=5.2e-14  Score=126.07  Aligned_cols=94  Identities=15%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~  175 (209)
                      ..+.++++|++|++++|.+++..|..    ++++++|++|++++|++++ .+|..++++++|++|++++|++++..|..+
T Consensus        98 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             hhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence            44566666666666666666544444    6666666666666666664 456666666666666666666666666666


Q ss_pred             cccCCCCC---CCccCCCCCch
Q 028394          176 KYASTLFP---CPIFCGSYFTE  194 (209)
Q Consensus       176 ~~l~~l~~---~~~~~~n~~~~  194 (209)
                      +.+.++..   ...+.+|.+++
T Consensus       174 ~~l~~L~~~l~~L~l~~n~l~~  195 (606)
T 3vq2_A          174 QFLRENPQVNLSLDMSLNPIDF  195 (606)
T ss_dssp             HHHHHCTTCCCEEECTTCCCCE
T ss_pred             hhhhccccccceeeccCCCcce
Confidence            55554421   24455555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.47  E-value=4e-15  Score=134.97  Aligned_cols=127  Identities=8%  Similarity=0.052  Sum_probs=104.8

Q ss_pred             CCcEEEEEcCCCCCCcc--cccc----------cCCcccc--CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec
Q 028394           73 TGRVIKLDLRDTRNWES--AEWY----------MNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL  138 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~--~~~~----------~~~~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L  138 (209)
                      -.+++.|+|++|.++..  ....          .-+..++  ++++|++|++++|.+.|.+|..    ++++++|++|++
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEEC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEEC
Confidence            35789999999998741  0000          0145577  8999999999999999999988    999999999999


Q ss_pred             ccCC-CCC-cchhhhcCC------CCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          139 DYNH-FNN-SIFSSLGGL------SSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       139 s~N~-l~g-~iP~~l~~l------~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++|+ ++| .+|..++++      ++|++|++++|+++ .||.  .++++++|.. ..+.+|.++|.+| .++.++++
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~-L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM-LECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE-EECCSCCCEEECC-CCEEEEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE-EeCcCCcCccchh-hhCCCCCC
Confidence            9998 999 899998887      89999999999999 8999  8999998885 7888999998888 55544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.47  E-value=1e-13  Score=112.73  Aligned_cols=122  Identities=20%  Similarity=0.194  Sum_probs=92.1

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|++++|.++.++     +..+.++++|++|++++|.+++..+..    +..+++|++|++++|++++..|..+.++
T Consensus        29 ~l~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           29 STKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             TCCEEECTTCCCCEEC-----TTTTTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CccEEECCCCcccccC-----HhHhccccCCcEEECCCCcCCccCHHH----ccCCcCCCEEECCCCccCccChhhhcCC
Confidence            5788888888876543     335677888888888888887655555    7888888888888888887777778888


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARF  206 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~  206 (209)
                      ++|++|++++|++++..+..++++.+|.. ..+.+|.+++ .+|..+..++++
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~l~~~~~~l~~L  151 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNL  151 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCCCCCCCGGGGGCTTC
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCE-EECcCCccceecCchhhccCCCC
Confidence            88888888888888766667777877775 7777787776 567766666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.47  E-value=4.8e-14  Score=122.01  Aligned_cols=113  Identities=21%  Similarity=0.164  Sum_probs=79.9

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|++++|.+..+     .+..+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..++++
T Consensus       300 ~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  370 (455)
T 3v47_A          300 DLEQLTLAQNEINKI-----DDNAFWGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQSFLGL  370 (455)
T ss_dssp             TCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCEEECCCCccccc-----ChhHhcCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChhhcccc
Confidence            455555555555422     2334666777778888877777655655    7778888888888888887777778888


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      ++|++|++++|++++..|..+..+++|.. ..+.+|.+++.+|
T Consensus       371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~  412 (455)
T 3v47_A          371 PNLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCE-EECCSSCBCCCTT
T ss_pred             ccccEEECCCCccccCCHhHhccCCcccE-EEccCCCcccCCC
Confidence            88888888888888644445577777764 7778888887776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.46  E-value=2e-13  Score=114.55  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=84.2

Q ss_pred             ccccceEEcCCCCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecc
Q 028394           62 CQWERVECNDTTGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLD  139 (209)
Q Consensus        62 C~W~gv~C~~~~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls  139 (209)
                      |.|..|.|..            + +++.+      |. +..+++|+.|+|++ |.+++..|..    |.++++|++|+|+
T Consensus         8 C~~~~v~~~~------------~n~l~~i------p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~   64 (347)
T 2ifg_A            8 HGSSGLRCTR------------DGALDSL------HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIV   64 (347)
T ss_dssp             SSSSCEECCS------------SCCCTTT------TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECC
T ss_pred             ccCCEEEcCC------------CCCCCcc------CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECC
Confidence            8887777753            3 44433      33 77788999999996 9998766666    8999999999999


Q ss_pred             cCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          140 YNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       140 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +|+|++..|..|+++++|++|+|++|+|++ +|........|. ...+.+|.+..
T Consensus        65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~L~-~l~l~~N~~~c  117 (347)
T 2ifg_A           65 KSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQ-ELVLSGNPLHC  117 (347)
T ss_dssp             SSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCC-EEECCSSCCCC
T ss_pred             CCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCCce-EEEeeCCCccC
Confidence            999999888899999999999999999995 555443333354 37777888874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=5.8e-14  Score=125.99  Aligned_cols=108  Identities=20%  Similarity=0.147  Sum_probs=96.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|+|++|.++.++      . ++.+++|+.|+|++|.++ .+|..    ++.+++|++|+|++|++++ +| .++.+
T Consensus       442 ~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             CceEEEecCCCCCCCc------C-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            4778999999988542      3 788999999999999999 88987    9999999999999999996 78 89999


Q ss_pred             CCCCEEeccCCcccccc-CCCCcccCCCCCCCccCCCCCchhhH
Q 028394          155 SSLRNLSLIGNRLIGSI-DIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~i-P~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      ++|++|+|++|++++.+ |..++.+++|.. ..+++|.+++.+|
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~-L~L~~N~l~~~~~  550 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVL-LNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCE-EECTTSGGGGSSS
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCE-EEecCCcCCCCcc
Confidence            99999999999999887 999999999885 8899999987654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=2.1e-14  Score=129.23  Aligned_cols=92  Identities=18%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+..+++|++|+|++|.+++..|..    ++++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..++.
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            3455555666666666555544443    555666666666666665433333456666666666666666555555555


Q ss_pred             cCCCCCCCccCCCCCch
Q 028394          178 ASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~  194 (209)
                      +++|.. ..+.+|.+++
T Consensus       170 l~~L~~-L~L~~N~l~~  185 (597)
T 3oja_B          170 TTSLQN-LQLSSNRLTH  185 (597)
T ss_dssp             CTTCCE-EECTTSCCSB
T ss_pred             CCcCcE-EECcCCCCCC
Confidence            555553 4555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.45  E-value=3.6e-14  Score=132.46  Aligned_cols=135  Identities=16%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             ccccceEEcCCCCcEEEEEcCCCCCCccccc--------------------ccCCccccCCCCCCEEEccCceeccccCC
Q 028394           62 CQWERVECNDTTGRVIKLDLRDTRNWESAEW--------------------YMNASLFTPFQQLESLYLIGNNIAGCVEN  121 (209)
Q Consensus        62 C~W~gv~C~~~~~~v~~L~L~~~~l~~~~~~--------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~  121 (209)
                      |.|..|.+  ...+++.|+|++|.++.+.+.                    .+++..|.++++|++|+|++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            34555555  246788888888877643210                    12234466666677777777776666566


Q ss_pred             CcchhcCCCCCCcEEecccCCCCCcchhh--hcCCCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHH
Q 028394          122 EGLDTLSRLNNLKFLYLDYNHFNNSIFSS--LGGLSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEV  198 (209)
Q Consensus       122 ~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~  198 (209)
                      .    +.++++|++|+|++|++++.+|..  ++++++|++|+|++|.+++..| ..++++++|.. ..+.+|.+++..|+
T Consensus        92 ~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~-L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           92 A----FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS-IDFSSNQIFLVCEH  166 (844)
T ss_dssp             S----SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE-EEEESSCCCCCCSG
T ss_pred             H----ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE-EECCCCcCCeeCHH
Confidence            5    677777777777777777655554  6677777777777777766544 35666776664 66667777766666


Q ss_pred             HHHHH
Q 028394          199 LIRDL  203 (209)
Q Consensus       199 ~~~~L  203 (209)
                      .+..+
T Consensus       167 ~l~~l  171 (844)
T 3j0a_A          167 ELEPL  171 (844)
T ss_dssp             GGHHH
T ss_pred             Hcccc
Confidence            66555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=7.2e-14  Score=108.51  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=87.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+       +.+..+++|++|++++|.+++..|..    ++.+++|++|++++|++++..|..++.
T Consensus        66 ~~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           66 HNIKDLTINNIHATNY-------NPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             TTCSEEEEESCCCSCC-------GGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             CCCCEEEccCCCCCcc-------hhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            3677788887765533       24677899999999999998877877    889999999999999999888888999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|++|++++|++.+.+| .+..+.+|.. ..+++|.+++
T Consensus       135 l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~-L~l~~n~i~~  173 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIM-PLKTLPELKS-LNIQFDGVHD  173 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCG-GGGGCSSCCE-EECTTBCCCC
T ss_pred             CCCCCEEEccCCCCccccH-hhcCCCCCCE-EECCCCCCcC
Confidence            9999999999998555777 5778888775 7777887775

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=1.1e-13  Score=120.44  Aligned_cols=118  Identities=21%  Similarity=0.138  Sum_probs=91.3

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (209)
Q Consensus        64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~  134 (209)
                      |..|.|...         ..+++.|+|++|.+..+.     +..|.++++|++|+|++|.+++..|..    +.++++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-----ADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-----HHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence            567888641         246899999999987543     456888999999999999998776676    88999999


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY  191 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~  191 (209)
                      +|+|++|++++..+..++.+++|++|+|++|++++-.+..+.++.+|.. ..+.+|+
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~l~~~~  182 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR-LDLGELK  182 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE-EECCCCT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE-EeCCCCC
Confidence            9999999999776677888999999999999998554446666666654 4444433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=1.4e-13  Score=104.99  Aligned_cols=105  Identities=20%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      ..++.|++++|.++.+..       +..+. +|++|++++|.+++.  +.    +..+++|++|++++|++++..|..++
T Consensus        19 ~~L~~L~l~~n~l~~i~~-------~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-------LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-------GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CCceEEEeeCCCCchhHH-------hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchhh
Confidence            356777777776664321       23333 677777777777653  33    67777777777777777744334446


Q ss_pred             CCCCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCc
Q 028394          153 GLSSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~  193 (209)
                      .+++|++|++++|+++ .+|.  .+..+.+|.. ..+.+|.++
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~-L~l~~N~i~  126 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTY-LCILRNPVT  126 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE-EECCSSGGG
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE-EEecCCCCC
Confidence            7777777777777773 5665  5666666653 666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=119.92  Aligned_cols=118  Identities=20%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             ccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394           64 WERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (209)
Q Consensus        64 W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~  134 (209)
                      |..|.|...         ...++.|+|++|.+..+.     +..|.++++|++|+|++|.+++..|..    +.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK-----VNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC-----TTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeC-----HHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence            567888641         246788999999887543     345778888888888888888655555    78888888


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCC
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSY  191 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~  191 (209)
                      +|+|++|++++..+..|..+++|++|+|++|++++-.+..+.++.+|.. ..+.+|+
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~-L~l~~~~  171 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR-LDLGELK  171 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE-EECCCCT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE-eCCCCCC
Confidence            8888888888666667888888888888888887555556666666654 4444433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.44  E-value=9.3e-14  Score=124.43  Aligned_cols=123  Identities=16%  Similarity=0.028  Sum_probs=68.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      ..++.|++++|.++.+.     +..|.++++|++|++++|.+++..|..    |.++++|++|++++|++++..|..+++
T Consensus        33 ~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             TTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             CcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccCeeeCCCCcccccChhhhcc
Confidence            46889999999887543     234555555555555555555444444    555555555555555555444444444


Q ss_pred             CCCCCEEeccCCccccccCCCCcc------------------------cCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKY------------------------ASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~------------------------l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|++++-.|..+++                        +.+|.. ..+.+|.+++..|+.++.++++
T Consensus       104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV-LDFQNNAIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE-EECCSSCCCEECHHHHHTTTTC
T ss_pred             cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE-EEcccCcccccChhhhhhhccc
Confidence            444444444444444332333333                        444443 5566777777667777776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.43  E-value=1.7e-13  Score=111.34  Aligned_cols=101  Identities=21%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|++|++++|.+++..|..    +..+++|++|++++|++++..+..++.+++|++|++++|++++..|..+..+
T Consensus       105 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQLKSLPPRV----FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cccccCCCEEECCCCccCeeCHHH----hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence            445555666666666655444433    5666666666666666665444456666666666666666665444445566


Q ss_pred             CCCCCCCccCCCCCchhhHHHHHHHH
Q 028394          179 STLFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      .+|.. ..+.+|.+++-.+..+..++
T Consensus       181 ~~L~~-L~L~~N~l~~~~~~~~~~l~  205 (270)
T 2o6q_A          181 TELKT-LKLDNNQLKRVPEGAFDSLE  205 (270)
T ss_dssp             TTCCE-EECCSSCCSCCCTTTTTTCT
T ss_pred             CCcCE-EECCCCcCCcCCHHHhcccc
Confidence            66553 55666666654443344333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.43  E-value=6.5e-14  Score=111.70  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=84.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCce-eccccCCCcchhcCCCCCCcEEeccc-CCCCCcchhhh
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~l~~L~~L~Ls~-N~l~g~iP~~l  151 (209)
                      ..++.|++++|.++.+.     +..+..+++|++|++++|. +++..+..    +.++++|++|++++ |++++..|..|
T Consensus        31 ~~l~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-----SHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-----TTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCCcceEEC-----HHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            47899999999987543     3457778889999999887 76433334    78888888888888 88886666678


Q ss_pred             cCCCCCCEEeccCCccccccCCCCcccCCCCC--CCccCCC-CCchhhHHHHHHHH
Q 028394          152 GGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP--CPIFCGS-YFTEQLEVLIRDLA  204 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~--~~~~~~n-~~~~~~p~~~~~L~  204 (209)
                      .++++|++|++++|++++ +|. +..+.++..  ...+.+| .+++-.+..+..++
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence            888888888888888886 776 666666541  2555566 55543333344333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.42  E-value=4.1e-13  Score=113.67  Aligned_cols=122  Identities=18%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      -.+++.|+|++|.+..+.     +..|..+++|++|+|++|.+++..+..    +..+++|++|+|++|++++..|..|.
T Consensus        63 l~~L~~L~L~~N~i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~  133 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFIS-----SEAFVPVPNLRYLDLSSNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFE  133 (361)
T ss_dssp             CTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccccCEEECCCCcCCccC-----hhhccCCCCCCEEECCCCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhC
Confidence            357899999999987543     456888999999999999998665555    88999999999999999988888999


Q ss_pred             CCCCCCEEeccCCccccccCCCC----cccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKG----KYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~----~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      ++++|++|+|++|++++ +|...    ..+.+|.. ..+.+|.+++-.+..+..+..
T Consensus       134 ~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~-L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          134 DMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLML-LDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             TCTTCCEEECCSSCCCS-CCGGGTC----CTTCCE-EECCSSCCCCCCHHHHHHSCH
T ss_pred             CcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCE-EECCCCCCCccCHHHhhhccH
Confidence            99999999999999995 67654    45777764 778888888766666666654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.8e-13  Score=106.34  Aligned_cols=116  Identities=21%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (209)
Q Consensus        77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  156 (209)
                      +.++++++.++.++.      .+  .++|+.|++++|.++ .+|..    +..+++|++|+|++|++++..|..|.++++
T Consensus        13 ~~l~~~~~~l~~ip~------~~--~~~l~~L~L~~n~i~-~ip~~----~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK------GI--PRDVTELYLDGNQFT-LVPKE----LSNYKHLTLIDLSNNRISTLSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCSSCCS------CC--CTTCCEEECCSSCCC-SCCGG----GGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEcCCCCCCcCCC------CC--CCCCCEEECCCCcCc-hhHHH----hhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence            368999999886543      12  258999999999998 78876    999999999999999999888889999999


Q ss_pred             CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      |++|+|++|++++..|..+..+.+|.. ..+.+|.++.-.+..+..++++
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~-L~L~~N~l~~~~~~~~~~l~~L  128 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLKSLRL-LSLHGNDISVVPEGAFNDLSAL  128 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTC
T ss_pred             CCEEECCCCccCEeCHHHhCCCCCCCE-EECCCCCCCeeChhhhhcCccc
Confidence            999999999999888888999999885 8888999986555556555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.42  E-value=6.2e-14  Score=127.29  Aligned_cols=123  Identities=15%  Similarity=0.063  Sum_probs=83.7

Q ss_pred             CcEEEEEcCCCCCCccccc-------------------ccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc
Q 028394           74 GRVIKLDLRDTRNWESAEW-------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK  134 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~  134 (209)
                      .+++.|++++|.+..+...                   .+.+..+.++++|++|++++|.+++..+..    ++++++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTCS
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh----hccCCCCC
Confidence            4677888888776543321                   011233455666667777666666332223    77778888


Q ss_pred             EEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394          135 FLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       135 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                      +|++++|++++..|..|+++++|++|++++|.+++..|..++++++|.. ..+.+|.+++..+..+.
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~  166 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE-LLLSNNKIQALKSEELD  166 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE-EECCSSCCCCBCHHHHG
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCE-EEccCCcccccCHHHhh
Confidence            8888888887666677788888888888888888777777777777775 67778888777666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.42  E-value=4.3e-13  Score=118.09  Aligned_cols=98  Identities=21%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      .+++|+.|+|++|.+++. |.     ...+++|++|+|++|++++ +|+.++.+++|+.|+|++|.+++ +|..+..+.+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~  238 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN  238 (487)
T ss_dssp             GTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred             hCCcccEEecCCCccccc-cc-----cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence            456666666666666643 22     3458889999999999986 45558899999999999999995 8998888888


Q ss_pred             CCCCCccCCCCCc-hhhHHHHHHHHhhh
Q 028394          181 LFPCPIFCGSYFT-EQLEVLIRDLARFL  207 (209)
Q Consensus       181 l~~~~~~~~n~~~-~~~p~~~~~L~~~~  207 (209)
                      |.. ..+.+|.+. +.+|..+..++.+.
T Consensus       239 L~~-L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          239 LEH-FDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CCE-EECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             CCE-EEcCCCCCcCcchHHHHHhCCCCc
Confidence            875 788899998 78888887666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=4.8e-14  Score=120.12  Aligned_cols=92  Identities=18%  Similarity=0.128  Sum_probs=50.3

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+..+++|++|++++|.+++..|..    ++++++|++|++++|+++...+..++++++|++|++++|++++..|..+..
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  163 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  163 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC
Confidence            3455555566666665555444444    555666666666666665322223455666666666666666555555555


Q ss_pred             cCCCCCCCccCCCCCch
Q 028394          178 ASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~  194 (209)
                      +++|.. ..+.+|.+++
T Consensus       164 l~~L~~-L~l~~n~l~~  179 (390)
T 3o6n_A          164 TTSLQN-LQLSSNRLTH  179 (390)
T ss_dssp             CTTCCE-EECCSSCCSB
T ss_pred             CCCCCE-EECCCCcCCc
Confidence            555553 4555555553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.41  E-value=3.7e-13  Score=120.55  Aligned_cols=105  Identities=21%  Similarity=0.237  Sum_probs=83.5

Q ss_pred             ccccCCCCCCEEEccCceeccc-cC--CCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGC-VE--NEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI  173 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~-ip--~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~  173 (209)
                      ..+..+++|++|++++|.+++. +|  ..    +..+++|++|++++|++++..|..++++++|++|++++|++++.+|.
T Consensus       443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  518 (606)
T 3t6q_A          443 QLFDGLPALQHLNLQGNHFPKGNIQKTNS----LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE  518 (606)
T ss_dssp             TTTTTCTTCCEEECTTCBCGGGEECSSCG----GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred             HHHhCCCCCCEEECCCCCCCccccccchh----hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence            4466778888888888888763 22  33    77888888888888888888888888888899999999998888888


Q ss_pred             CCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          174 KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       174 ~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      .+.++..+  ...+++|.+++.+|+.+..++++.
T Consensus       519 ~l~~l~~L--~L~L~~N~l~~~~~~~~~~l~~L~  550 (606)
T 3t6q_A          519 ALSHLKGI--YLNLASNHISIILPSLLPILSQQR  550 (606)
T ss_dssp             GGTTCCSC--EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred             HhCccccc--EEECcCCcccccCHhhcccCCCCC
Confidence            88888887  377888888888888777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.41  E-value=2e-13  Score=121.08  Aligned_cols=105  Identities=17%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc-ccCCCC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG-SIDIKG  175 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G-~iP~~~  175 (209)
                      ..|.++++|++|++++|.+++..|..    +.++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+
T Consensus        70 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~  145 (570)
T 2z63_A           70 GAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (570)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ccccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence            44666777777777777777555555    7777778888888887775444467788888888888888876 578888


Q ss_pred             cccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          176 KYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       176 ~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++.+|.. ..+.+|.+++..|..++.++++
T Consensus       146 ~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          146 SNLTNLEH-LDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             GGCTTCCE-EECTTSCCCEECGGGGHHHHTC
T ss_pred             cccCCCCE-EeCcCCccceecHHHccchhcc
Confidence            88888775 7778888887777777777765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=2.1e-13  Score=112.32  Aligned_cols=89  Identities=20%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CCcc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KGKY  177 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~~~  177 (209)
                      +..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..|..+++|++|+|++|++++ +|. .+..
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~  170 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNG  170 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTT
T ss_pred             hccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcC
Confidence            344555555555555555433333    5555666666666666654444445556666666666666653 333 3344


Q ss_pred             cCCCCCCCccCCCCCc
Q 028394          178 ASTLFPCPIFCGSYFT  193 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~  193 (209)
                      +.+|.. ..+.+|.++
T Consensus       171 l~~L~~-L~L~~N~l~  185 (290)
T 1p9a_G          171 LENLDT-LLLQENSLY  185 (290)
T ss_dssp             CTTCCE-EECCSSCCC
T ss_pred             cCCCCE-EECCCCcCC
Confidence            555543 455555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.40  E-value=2.8e-13  Score=111.64  Aligned_cols=108  Identities=23%  Similarity=0.197  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC
Q 028394           76 VIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS  155 (209)
Q Consensus        76 v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~  155 (209)
                      ++.|++++|.++.     +++..|..+++|++|++++|.+++..+..    +..+++|++|+|++|++++..+..+..++
T Consensus       102 L~~L~l~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G          102 LTVLDVSFNRLTS-----LPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             CCEEECCSSCCCC-----CCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             CCEEECCCCcCcc-----cCHHHHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcC
Confidence            4444444444432     22345778888999999999988654444    67888899999999999865555678888


Q ss_pred             CCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          156 SLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       156 ~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +|++|+|++|+++ .||..+....++.. ..+.+|.+..
T Consensus       173 ~L~~L~L~~N~l~-~ip~~~~~~~~L~~-l~L~~Np~~C  209 (290)
T 1p9a_G          173 NLDTLLLQENSLY-TIPKGFFGSHLLPF-AFLHGNPWLC  209 (290)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCCCSE-EECCSCCBCC
T ss_pred             CCCEEECCCCcCC-ccChhhcccccCCe-EEeCCCCccC
Confidence            9999999999998 78888888777664 6677777763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.40  E-value=4.2e-13  Score=118.98  Aligned_cols=124  Identities=20%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.++.+.     +..|..+++|++|++++|.+++..|..    +.++++|++|++++|++++..|..|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~   98 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG   98 (570)
T ss_dssp             SSCCEEECCSCCCCEEC-----TTTTTTCSSCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             ccccEEEccCCccCccC-----hhHhhCCCCceEEECCCCcCCccCccc----ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence            35778888888776443     335677888888888888887655555    778888888888888888766777888


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARFL  207 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~~  207 (209)
                      +++|++|++++|++++--+..++++.+|.. ..+.+|.+++ ++|+.++.++++.
T Consensus        99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~-L~L~~n~l~~~~lp~~~~~l~~L~  152 (570)
T 2z63_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKE-LNVAHNLIQSFKLPEYFSNLTNLE  152 (570)
T ss_dssp             CTTCCEEECTTSCCCCSTTCSCTTCTTCCE-EECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             ccccccccccccccccCCCccccccccccE-EecCCCccceecChhhhcccCCCC
Confidence            888888888888887544446777777775 7777777776 6777777666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=9.3e-14  Score=114.50  Aligned_cols=97  Identities=21%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             ccCCCCCCEEEccCceecc-ccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           99 FTPFQQLESLYLIGNNIAG-CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      +..+++|++|++++|.+++ .+|..    +..+++|++|++++|++++..|..++.+++|++|++++|++++..+..+..
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             cccCcCCCEEECCCCccccccchhH----HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence            4445555555555555554 34444    556666666666666666555555666666666666666666544445555


Q ss_pred             cCCCCCCCccCCCCCchhhHHHH
Q 028394          178 ASTLFPCPIFCGSYFTEQLEVLI  200 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~~~p~~~  200 (209)
                      +.+|.. ..+.+|.+++..|..+
T Consensus       222 l~~L~~-L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          222 LNSLQV-LDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             CTTCCE-EECTTSCCCBCSSSSC
T ss_pred             cccCCE-eECCCCCCcccCHHHH
Confidence            555553 5556666665555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=1.1e-12  Score=109.05  Aligned_cols=100  Identities=21%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS  179 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~  179 (209)
                      ..+++|++|++++|.+++. |.     ...+++|++|++++|++++ +|+.+..+++|++|++++|+++ .+|..+..+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             hccCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence            3567788888888887743 43     4568999999999999995 5666999999999999999999 6899999999


Q ss_pred             CCCCCCccCCCCCc-hhhHHHHHHHHhhhh
Q 028394          180 TLFPCPIFCGSYFT-EQLEVLIRDLARFLR  208 (209)
Q Consensus       180 ~l~~~~~~~~n~~~-~~~p~~~~~L~~~~~  208 (209)
                      +|.. ..+.+|.++ +.+|..+..++++.+
T Consensus       238 ~L~~-L~l~~N~~~~~~~~~~~~~~~~L~~  266 (317)
T 3o53_A          238 NLEH-FDLRGNGFHCGTLRDFFSKNQRVQT  266 (317)
T ss_dssp             TCCE-EECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred             CCCE-EEccCCCccCcCHHHHHhccccceE
Confidence            8885 889999999 888998888776643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=5.5e-13  Score=101.58  Aligned_cols=117  Identities=14%  Similarity=0.051  Sum_probs=93.8

Q ss_pred             EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (209)
Q Consensus        77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  156 (209)
                      +.++++++++..++.     . +  .++|+.|++++|.+++..+..    +..+++|++|++++|++++..|..++.+++
T Consensus        10 ~~l~~~~~~l~~~p~-----~-~--~~~l~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~   77 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPT-----G-I--PSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK   77 (177)
T ss_dssp             TEEECCSSCCSSCCT-----T-C--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CEEEecCCCCccCCC-----C-C--CCCCcEEEeCCCcccEeCHHH----hcCcccccEEECCCCcceEeChhHccCCCc
Confidence            578899998875532     1 1  368999999999999655555    789999999999999999777777899999


Q ss_pred             CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      |++|++++|++++..|..+..+.+|.. ..+.+|.+++-.+..+..++++
T Consensus        78 L~~L~l~~N~l~~~~~~~~~~l~~L~~-L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           78 LTILYLHENKLQSLPNGVFDKLTQLKE-LALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCE-EECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCEEECCCCCccccCHHHhhCCcccCE-EECcCCcceEeCHHHhcCCccc
Confidence            999999999999776667788888875 8888999986555444555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=4.6e-13  Score=116.82  Aligned_cols=123  Identities=16%  Similarity=0.069  Sum_probs=101.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.+..+.     +..|.++++|++|+|++|.+++..+..    +.++++|++|+|++|++++..|..+.+
T Consensus        56 ~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           56 PHLEELELNENIVSAVE-----PGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCEEECCCCccCEeC-----hhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHccc
Confidence            57899999999887543     456888999999999999998544444    788999999999999999888888999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|.+++..|..+..+.+|.. ..+.+|.+++..+..+..++++
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQ-LTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCE-EEEESCCCSSCCHHHHTTCTTC
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCE-EECCCCcCcccChhHhcccCCC
Confidence            999999999999999888888888888875 7788888887766667666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.38  E-value=1.4e-13  Score=106.86  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=97.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+++++.+..+.       .+..+++|++|++++|.++ .+ +.    +..+++|++|++++|++++..|..++.
T Consensus        44 ~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~l~~n~~~-~~-~~----l~~l~~L~~L~l~~n~l~~~~~~~l~~  110 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-------GIEYAHNIKDLTINNIHAT-NY-NP----ISGLSNLERLRIMGKDVTSDKIPNLSG  110 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-------TGGGCTTCSEEEEESCCCS-CC-GG----GTTCTTCCEEEEECTTCBGGGSCCCTT
T ss_pred             CCccEEeccCCCccChH-------HHhcCCCCCEEEccCCCCC-cc-hh----hhcCCCCCEEEeECCccCcccChhhcC
Confidence            36889999999887543       3777999999999999775 23 34    899999999999999999888999999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      +++|++|++++|++++..|..++.+.+|.. ..+.+|.+.+.+| .+..+++
T Consensus       111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~-L~L~~n~~i~~~~-~l~~l~~  160 (197)
T 4ezg_A          111 LTSLTLLDISHSAHDDSILTKINTLPKVNS-IDLSYNGAITDIM-PLKTLPE  160 (197)
T ss_dssp             CTTCCEEECCSSBCBGGGHHHHTTCSSCCE-EECCSCTBCCCCG-GGGGCSS
T ss_pred             CCCCCEEEecCCccCcHhHHHHhhCCCCCE-EEccCCCCccccH-hhcCCCC
Confidence            999999999999999999999999999885 7788887555565 3444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.38  E-value=2.1e-13  Score=120.08  Aligned_cols=109  Identities=17%  Similarity=0.051  Sum_probs=95.5

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    ++++++|++|++++|+++ .+|..  .
T Consensus        21 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~   88 (520)
T 2z7x_B           21 QKTTILNISQNYISELW-----TSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P   88 (520)
T ss_dssp             TTCSEEECCSSCCCCCC-----HHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred             ccccEEECCCCcccccC-----hhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence            57999999999887543     345788999999999999999877877    999999999999999999 68876  8


Q ss_pred             CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCchh
Q 028394          154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      +++|++|++++|++++ .+|..++++.+|.. ..+.+|.+++.
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~-L~L~~n~l~~~  130 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKF-LGLSTTHLEKS  130 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCE-EEEEESSCCGG
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceE-EEecCcccchh
Confidence            9999999999999998 78999999999886 78888988874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.37  E-value=5.2e-14  Score=131.86  Aligned_cols=124  Identities=12%  Similarity=0.031  Sum_probs=98.8

Q ss_pred             CcEEEEEcCCCCCCcc--ccc-----------ccCCcccc--CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec
Q 028394           74 GRVIKLDLRDTRNWES--AEW-----------YMNASLFT--PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL  138 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~--~~~-----------~~~~~~~~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L  138 (209)
                      .+++.|+|++|.+...  ...           .+ |+.++  ++++|++|+|++|.+.|.+|..    ++++++|++|+|
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~L  522 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNI  522 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEEC
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEEC
Confidence            5789999999998740  000           01 34455  8999999999999999999987    999999999999


Q ss_pred             ccCC-CCC-cchhhhcCCC-------CCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          139 DYNH-FNN-SIFSSLGGLS-------SLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       139 s~N~-l~g-~iP~~l~~l~-------~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++|+ ++| .+|..+++++       +|++|+|++|+++ .||.  .++++.+|.. ..+++|.++ .+| .++.++++
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~-L~Ls~N~l~-~lp-~~~~L~~L  597 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL-LDCVHNKVR-HLE-AFGTNVKL  597 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE-EECTTSCCC-BCC-CCCTTSEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE-EECCCCCcc-cch-hhcCCCcc
Confidence            9998 998 8998877766       8999999999999 8998  8888888875 777788877 777 55544443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.37  E-value=2.7e-13  Score=120.84  Aligned_cols=108  Identities=19%  Similarity=0.106  Sum_probs=92.1

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    +.++++|++|++++|+++ .+|..  .
T Consensus        52 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~  119 (562)
T 3a79_B           52 PRTKALSLSQNSISELR-----MPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P  119 (562)
T ss_dssp             TTCCEEECCSSCCCCCC-----GGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred             CCcCEEECCCCCccccC-----hhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence            57899999999887543     356888999999999999999877777    899999999999999998 78876  8


Q ss_pred             CCCCCEEeccCCcccc-ccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIG-SIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G-~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|++|++++|++++ ++|..++++++|.. ..+.+|.+++
T Consensus       120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~-L~L~~n~l~~  160 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTF-LGLSAAKFRQ  160 (562)
T ss_dssp             CTTCSEEECCSSCCSBCCCCGGGGGCTTCCE-EEEECSBCCT
T ss_pred             cccCCEEECCCCCccccCchHhhcccCcccE-EecCCCcccc
Confidence            9999999999999987 67788999998875 7777888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.37  E-value=4.4e-14  Score=117.23  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=60.7

Q ss_pred             CCCCCCEEEccCceeccccCCCcchhc--CCCCCCcEEecccCCCCCcchhhhcCC-----CCCCEEeccCCccccccCC
Q 028394          101 PFQQLESLYLIGNNIAGCVENEGLDTL--SRLNNLKFLYLDYNHFNNSIFSSLGGL-----SSLRNLSLIGNRLIGSIDI  173 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~--~~l~~L~~L~Ls~N~l~g~iP~~l~~l-----~~L~~L~L~~N~l~G~iP~  173 (209)
                      .+++|++|++++|.++|.+|..    +  ..+++|++|++++|++++. |..++.+     ++|++|++++|++++..|.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPP----LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCC----SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCcccchhHHH----HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            4677777777777777777765    4  6677777777777777765 6666655     6677777777777666666


Q ss_pred             CCcccCCCCCCCccCCCCCchh
Q 028394          174 KGKYASTLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       174 ~~~~l~~l~~~~~~~~n~~~~~  195 (209)
                      .++++.+|.. ..+++|.+.+.
T Consensus       168 ~~~~l~~L~~-L~Ls~N~l~~~  188 (312)
T 1wwl_A          168 QVRVFPALST-LDLSDNPELGE  188 (312)
T ss_dssp             TCCCCSSCCE-EECCSCTTCHH
T ss_pred             HhccCCCCCE-EECCCCCcCcc
Confidence            6666666664 66666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=5.3e-13  Score=111.19  Aligned_cols=120  Identities=20%  Similarity=0.259  Sum_probs=75.8

Q ss_pred             CCccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCC
Q 028394           60 DCCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRL  130 (209)
Q Consensus        60 ~~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l  130 (209)
                      ..|+|+.+.|...         ...++.|++++|.++.+.     +..+..+++|++|++++|.+++..|..    +..+
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l   99 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FAPL   99 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence            3478999999741         246888999999887543     335677888888888888888666766    7777


Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCC
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYF  192 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~  192 (209)
                      ++|++|++++|+++ .+|..+.  ++|++|++++|++++..|..+.++.+|.. ..+.+|.+
T Consensus       100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l  157 (330)
T 1xku_A          100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIV-VELGTNPL  157 (330)
T ss_dssp             TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCE-EECCSSCC
T ss_pred             CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccE-EECCCCcC
Confidence            77777777777766 4444332  44555555555555433333444444432 33344444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=3e-12  Score=97.79  Aligned_cols=100  Identities=21%  Similarity=0.312  Sum_probs=81.3

Q ss_pred             ccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCC
Q 028394           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (209)
Q Consensus        62 C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~  132 (209)
                      |....+.|...         ..+++.|+|++|.+..+.     +..|..+++|++|+|++|++++..+..    +.++++
T Consensus        12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~   82 (174)
T 2r9u_A           12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQ   82 (174)
T ss_dssp             ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTT
T ss_pred             ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhH----hCCcch
Confidence            44555666531         246889999999987543     456889999999999999999644444    689999


Q ss_pred             CcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccc
Q 028394          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGS  170 (209)
Q Consensus       133 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~  170 (209)
                      |++|+|++|++++..|..|..+++|++|+|++|.+...
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99999999999976666799999999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.35  E-value=1.1e-13  Score=122.52  Aligned_cols=119  Identities=18%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~  152 (209)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    ++++++|++|++++|++++ .+|..++
T Consensus        50 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           50 ANLQVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             CcccEEECCCCCcCccC-----hhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhhh
Confidence            46778888888776432     344666777777777777776555444    6666777777777777665 3455666


Q ss_pred             CCCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEVLIRD  202 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~  202 (209)
                      ++++|++|++++|++.+.+| ..+.++++|.. ..+.+|.+++.+|..++.
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE-LEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEE-EEEEETTCCEECTTTTTT
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCe-eeccCCcccccChhhhhc
Confidence            66666666666666555555 35555655553 555556565555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=8.8e-13  Score=118.59  Aligned_cols=122  Identities=14%  Similarity=0.117  Sum_probs=101.5

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.++++++.+..+     ++..+..+++|++|+|++|.+++..|..    ++.+++|++|+|++|.+++..|..|+++
T Consensus        52 ~l~~l~l~~~~l~~l-----p~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           52 NQKIVTFKNSTMRKL-----PAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             CCSEEEESSCEESEE-----CTHHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CceEEEeeCCCCCCc-----CHHHHccCCCCcEEECCCCCCCCCChHH----hcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            456778888776543     3455778999999999999999877767    9999999999999999999888889999


Q ss_pred             CCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      ++|++|+|++|.+++ +|.. ++++.+|.. ..+.+|.+++..|..+..++++.
T Consensus       123 ~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B          123 PLLTVLVLERNDLSS-LPRGIFHNTPKLTT-LSMSNNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCE-EECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCEEEeeCCCCCC-CCHHHhccCCCCCE-EEeeCCcCCCCChhhhhcCCcCc
Confidence            999999999999995 5554 588999885 88889999988888777766653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.35  E-value=3.1e-13  Score=119.03  Aligned_cols=114  Identities=23%  Similarity=0.187  Sum_probs=80.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-cchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-SIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-~iP~~l~  152 (209)
                      .+++.|++++|.+..+.     +..+..+++|++|++++|.++ .+|.     . .+++|++|++++|++++ .+|..++
T Consensus        45 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~-~lp~-----~-~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           45 SKLRILIISHNRIQYLD-----ISVFKFNQELEYLDLSHNKLV-KISC-----H-PTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             TTCCEEECCSSCCCEEE-----GGGGTTCTTCCEEECCSSCCC-EEEC-----C-CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             ccccEEecCCCccCCcC-----hHHhhcccCCCEEecCCCcee-ecCc-----c-ccCCccEEeccCCccccccchhhhc
Confidence            46778888888776442     345777888888888888887 5665     2 67788888888888876 5777888


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCC--CCCCccCCCCC--chhhHHHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTL--FPCPIFCGSYF--TEQLEVLIRDL  203 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l--~~~~~~~~n~~--~~~~p~~~~~L  203 (209)
                      ++++|++|++++|++++   ..+..++++  .. ..+.+|.+  .+.+|+.+..+
T Consensus       113 ~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~-L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B          113 NMSQLKFLGLSTTHLEK---SSVLPIAHLNISK-VLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             GCTTCCEEEEEESSCCG---GGGGGGTTSCEEE-EEEEECTTTTSSCCTTTTTTC
T ss_pred             cCCcceEEEecCcccch---hhccccccceeeE-EEeeccccccccccccccccc
Confidence            88888888888888876   334555555  43 56667777  56666555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.35  E-value=2.8e-13  Score=112.41  Aligned_cols=110  Identities=20%  Similarity=0.092  Sum_probs=81.2

Q ss_pred             CcEEEEEcCCCCCCcccccccCCcc-ccCCCCCCEEEccCceeccccCCCcchhcCCC-----CCCcEEecccCCCCCcc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASL-FTPFQQLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI  147 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l-----~~L~~L~Ls~N~l~g~i  147 (209)
                      .+++.|++++|.+....+    ... +..+++|++|++++|.+++. |..    ++.+     ++|++|++++|++++..
T Consensus        95 ~~L~~L~L~~n~l~~~~~----~~~~~~~l~~L~~L~Ls~N~l~~~-~~~----~~~l~~~~~~~L~~L~L~~N~l~~~~  165 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAP----PPLLEATGPDLNILNLRNVSWATR-DAW----LAELQQWLKPGLKVLSIAQAHSLNFS  165 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCC----CCSSSCCSCCCSEEEEESCBCSSS-SSH----HHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred             CCccEEEccCCcccchhH----HHHHHhcCCCccEEEccCCCCcch-hHH----HHHHHHhhcCCCcEEEeeCCCCccch
Confidence            367777887777653211    222 27788889999999988876 655    5555     88888888888888877


Q ss_pred             hhhhcCCCCCCEEeccCCccccc--cCCCC--cccCCCCCCCccCCCCCc
Q 028394          148 FSSLGGLSSLRNLSLIGNRLIGS--IDIKG--KYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       148 P~~l~~l~~L~~L~L~~N~l~G~--iP~~~--~~l~~l~~~~~~~~n~~~  193 (209)
                      |..++++++|++|++++|++.|.  +|..+  +.+.+|.. ..+.+|.++
T Consensus       166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~L~~N~l~  214 (312)
T 1wwl_A          166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV-LALRNAGME  214 (312)
T ss_dssp             TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE-EECTTSCCC
T ss_pred             HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE-EECCCCcCc
Confidence            78888888888888888888876  34444  67777764 777788887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=121.88  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcch-hhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF-SSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP-~~l~  152 (209)
                      .+++.|+|++|.+..+     .+..|.++++|++|+|++|.+++.+|..  ..+.++++|++|+|++|++++..| ..++
T Consensus        73 ~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~  145 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFL-----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG  145 (844)
T ss_dssp             TTCCEEECTTCCCCEE-----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred             CCCCEEECCCCcCccc-----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHh
Confidence            4577777777776643     2566889999999999999999876653  127899999999999999998755 5799


Q ss_pred             CCCCCCEEeccCCccccccCCCCccc--CCCCCCCccCCCCCchhhHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYA--STLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l--~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                      ++++|++|++++|.+++..|..+..+  .+|.. ..+..|.+++.+|..+.
T Consensus       146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~-L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF-FSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC-CEECCSBSCCCCCCCCC
T ss_pred             hCCCCCEEECCCCcCCeeCHHHcccccCCccce-EECCCCccccccccchh
Confidence            99999999999999999999988877  66664 77888888887665443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.32  E-value=1.9e-12  Score=110.15  Aligned_cols=122  Identities=15%  Similarity=0.130  Sum_probs=99.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.++++++.+..++     ...+..+++|++|++++|.+++..|..    +..+++|++|++++|++++..|..+++
T Consensus        45 ~~l~~l~l~~~~l~~l~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLP-----AALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             CCCSEEEEESCEESEEC-----THHHHHCCCCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCceEEEecCCchhhCC-----hhHhcccccCcEEECCCCcccccChhh----ccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            45778888888776443     345677899999999999998766656    899999999999999999888888999


Q ss_pred             CCCCCEEeccCCccccccCCC-CcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIK-GKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~-~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|+++ .+|.. +.++.+|.. ..+.+|.+++..|..+..++++
T Consensus       116 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L  167 (390)
T 3o6n_A          116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTT-LSMSNNNLERIEDDTFQATTSL  167 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCE-EECCSSCCCBCCTTTTSSCTTC
T ss_pred             CCCCCEEECCCCccC-cCCHHHhcCCCCCcE-EECCCCccCccChhhccCCCCC
Confidence            999999999999998 67765 478888875 7888998888777666665554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.31  E-value=5.6e-12  Score=105.13  Aligned_cols=119  Identities=27%  Similarity=0.291  Sum_probs=75.5

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (209)
Q Consensus        61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~  131 (209)
                      .|+|..+.|...         ..+++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    +.+++
T Consensus        32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~  102 (332)
T 2ft3_A           32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-----KDDFKGLQHLYALVLVNNKISKIHEKA----FSPLR  102 (332)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----STTCT
T ss_pred             cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-----HhHhhCCCCCcEEECCCCccCccCHhH----hhCcC
Confidence            378999999641         246899999999887543     345677777888888888777665665    77777


Q ss_pred             CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCC
Q 028394          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYF  192 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~  192 (209)
                      +|++|++++|+++ .+|..+.  ++|++|++++|++++..+..+.++.+|.. ..+.+|.+
T Consensus       103 ~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~-L~l~~n~l  159 (332)
T 2ft3_A          103 KLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC-IEMGGNPL  159 (332)
T ss_dssp             TCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE-EECCSCCC
T ss_pred             CCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE-EECCCCcc
Confidence            7777777777776 4554433  45555555555555333333444544443 44444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.31  E-value=5e-12  Score=109.46  Aligned_cols=90  Identities=19%  Similarity=0.152  Sum_probs=50.6

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|+.|+|++|.+++..|..    +.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..+
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            344555555566666555544444    5666666666666666665555556666666666666666664444444555


Q ss_pred             CCCCCCCccCCCCCc
Q 028394          179 STLFPCPIFCGSYFT  193 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~  193 (209)
                      .+|.. ..+.+|.+.
T Consensus       279 ~~L~~-L~L~~Np~~  292 (440)
T 3zyj_A          279 HHLER-IHLHHNPWN  292 (440)
T ss_dssp             TTCCE-EECCSSCEE
T ss_pred             cCCCE-EEcCCCCcc
Confidence            55543 444555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=1.9e-12  Score=97.67  Aligned_cols=108  Identities=21%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc-chhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS-IFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~-iP~~l~  152 (209)
                      .+++.|++++|.+..+       ..+..+++|++|++++|.+++.+|..    +..+++|++|++++|++++. .+..++
T Consensus        49 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           49 VNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             GGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             CCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHh
Confidence            4789999999998754       34778999999999999999877765    77799999999999999964 237899


Q ss_pred             CCCCCCEEeccCCccccccC---CCCcccCCCCCCCccCCCCCc
Q 028394          153 GLSSLRNLSLIGNRLIGSID---IKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP---~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      .+++|++|++++|.+++..+   ..+..+.+|.. ..+.+|...
T Consensus       118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~-L~l~~n~~~  160 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY-LDGYDREDQ  160 (168)
T ss_dssp             SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE-ETTEETTSC
T ss_pred             cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE-ecCCCCChh
Confidence            99999999999999996544   36777888765 555566543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.30  E-value=1.6e-12  Score=115.81  Aligned_cols=115  Identities=18%  Similarity=0.105  Sum_probs=99.1

Q ss_pred             EEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCC
Q 028394           77 IKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSS  156 (209)
Q Consensus        77 ~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~  156 (209)
                      +.+++++++++.++.      .+  .++|++|++++|.+++..|..    +.++++|++|++++|++++..|..|+++++
T Consensus        34 ~~l~ls~~~L~~ip~------~~--~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  101 (562)
T 3a79_B           34 SMVDYSNRNLTHVPK------DL--PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQD  101 (562)
T ss_dssp             CEEECTTSCCCSCCT------TS--CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred             cEEEcCCCCCccCCC------CC--CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence            789999999886542      22  278999999999999766666    999999999999999999888999999999


Q ss_pred             CCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch-hhHHHHHHHHhhh
Q 028394          157 LRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE-QLEVLIRDLARFL  207 (209)
Q Consensus       157 L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~-~~p~~~~~L~~~~  207 (209)
                      |++|+|++|+++ .||..  .+.+|.. ..+.+|.+++ .+|+.++.++++.
T Consensus       102 L~~L~Ls~N~l~-~lp~~--~l~~L~~-L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B          102 LEYLDVSHNRLQ-NISCC--PMASLRH-LDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             CCEEECTTSCCC-EECSC--CCTTCSE-EECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             CCEEECCCCcCC-ccCcc--ccccCCE-EECCCCCccccCchHhhcccCccc
Confidence            999999999999 79988  7888875 8889999987 6778887777654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.30  E-value=4.1e-12  Score=115.27  Aligned_cols=122  Identities=19%  Similarity=0.165  Sum_probs=97.8

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|+|++|.+..+     ++..|..+++|++|++++|.+++..|..    ++++++|++|++++|++++..|..++++
T Consensus        74 ~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           74 MLKVLNLQHNELSQL-----SDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             TCCEEECCSSCCCCC-----CTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             CcCEEECCCCccCcc-----ChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence            456666666665533     2345888999999999999998766666    9999999999999999999999999999


Q ss_pred             CCCCEEeccCCccccccCCCCc--ccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGK--YASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~--~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++|++|++++|.+++..|..+.  .+++|.. ..+.+|.+++..|..+..+.++
T Consensus       145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~-L~L~~n~l~~~~~~~~~~l~~L  197 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKSEELDIFANSSLKK-LELSSNQIKEFSPGCFHAIGRL  197 (680)
T ss_dssp             TTCCEEECCSSCCCCBCHHHHGGGTTCEESE-EECTTCCCCCBCTTGGGGSSEE
T ss_pred             ccCCEEEccCCcccccCHHHhhccccccccE-EECCCCcccccChhhhhhhhhh
Confidence            9999999999999987776554  3456664 7788999998888777665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.30  E-value=5.5e-12  Score=109.54  Aligned_cols=89  Identities=22%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccC
Q 028394          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAS  179 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~  179 (209)
                      ..+++|+.|+|++|.+++..|..    +.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+..+.
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             cccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            34445555555555555444443    55555555555555555555555555555555555555555543334444454


Q ss_pred             CCCCCCccCCCCCc
Q 028394          180 TLFPCPIFCGSYFT  193 (209)
Q Consensus       180 ~l~~~~~~~~n~~~  193 (209)
                      +|.. ..+.+|.+.
T Consensus       291 ~L~~-L~L~~Np~~  303 (452)
T 3zyi_A          291 YLVE-LHLHHNPWN  303 (452)
T ss_dssp             TCCE-EECCSSCEE
T ss_pred             CCCE-EEccCCCcC
Confidence            4442 444445444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.30  E-value=1e-12  Score=97.24  Aligned_cols=98  Identities=18%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             CCCCCEEEccCceec-cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394          102 FQQLESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      .++|+.|++++|.++ |.+|..    +..+++|++|++++|++++.  ..++.+++|++|++++|.+++.+|..+..+.+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGL----TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSC----CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             CccCeEEEccCCcCChhHHHHH----HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            578999999999998 889987    89999999999999999976  77899999999999999999989998888999


Q ss_pred             CCCCCccCCCCCch-hhHHHHHHHHhh
Q 028394          181 LFPCPIFCGSYFTE-QLEVLIRDLARF  206 (209)
Q Consensus       181 l~~~~~~~~n~~~~-~~p~~~~~L~~~  206 (209)
                      |.. ..+++|.+++ ..+..+..++++
T Consensus        90 L~~-L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           90 LTH-LNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             CCE-EECTTSCCCSHHHHGGGGGCTTC
T ss_pred             CCE-EECCCCcCCChHHHHHHhhCCCC
Confidence            885 8889999987 455666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.27  E-value=4.7e-12  Score=96.46  Aligned_cols=106  Identities=19%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh--hhc
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--SLG  152 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--~l~  152 (209)
                      +++.|++++|.++.+       +.+..+++|++|++++|.+++ +|+.   .+..+++|++|++++|+++ .+|.  .++
T Consensus        43 ~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~-~~~~---~~~~l~~L~~L~L~~N~i~-~~~~~~~l~  110 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICR-IGEG---LDQALPDLTELILTNNSLV-ELGDLDPLA  110 (176)
T ss_dssp             CCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCE-ECSC---HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             CCCEEECCCCCCCcc-------cccccCCCCCEEECCCCcccc-cCcc---hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence            799999999998854       247889999999999999995 5554   1488999999999999996 6776  899


Q ss_pred             CCCCCCEEeccCCccccccCCC----CcccCCCCCCCccCCCCCch
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIK----GKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~----~~~l~~l~~~~~~~~n~~~~  194 (209)
                      .+++|++|++++|.++ .+|..    +..+.+|.. ..+..|....
T Consensus       111 ~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~-Ld~~~n~~~~  154 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV-LDFQKVKLKE  154 (176)
T ss_dssp             GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE-ETTEECCHHH
T ss_pred             cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce-eCCCcCCHHH
Confidence            9999999999999998 67875    788888775 6666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.27  E-value=4e-12  Score=105.79  Aligned_cols=85  Identities=26%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             CCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394          104 QLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFP  183 (209)
Q Consensus       104 ~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~  183 (209)
                      +|++|++++|.+++..|..    +..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+..+.+|..
T Consensus       193 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~  267 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV  267 (330)
T ss_dssp             TCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred             cCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence            3444444444444333333    666666666666666666655556666666666666666666 66666666666553


Q ss_pred             CCccCCCCCch
Q 028394          184 CPIFCGSYFTE  194 (209)
Q Consensus       184 ~~~~~~n~~~~  194 (209)
                       ..+.+|.+++
T Consensus       268 -L~l~~N~i~~  277 (330)
T 1xku_A          268 -VYLHNNNISA  277 (330)
T ss_dssp             -EECCSSCCCC
T ss_pred             -EECCCCcCCc
Confidence             5556666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.26  E-value=5.4e-13  Score=110.99  Aligned_cols=103  Identities=19%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             ccCCCCCCEEEccCceeccc-cCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC-cccc-ccCCCC
Q 028394           99 FTPFQQLESLYLIGNNIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN-RLIG-SIDIKG  175 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N-~l~G-~iP~~~  175 (209)
                      +..+++|++|++++|.+++. +|..    +..+++|++|++++|++++..|..++.+++|++|++++| .+++ .+|..+
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            45678899999999988766 7765    788899999999999998888888888999999999998 6877 377777


Q ss_pred             cccCCCCCCCccCCC-CCchh-hHHHHHHHH-hh
Q 028394          176 KYASTLFPCPIFCGS-YFTEQ-LEVLIRDLA-RF  206 (209)
Q Consensus       176 ~~l~~l~~~~~~~~n-~~~~~-~p~~~~~L~-~~  206 (209)
                      .++.+|.. ..+.+| .+++. ++..+..++ ++
T Consensus       165 ~~~~~L~~-L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          165 SSCSRLDE-LNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             HHCTTCCE-EECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             hcCCCCCE-EcCCCCCCcChHHHHHHHHhcccCC
Confidence            78888775 777788 88864 787777776 54

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.26  E-value=7.2e-13  Score=111.43  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=56.9

Q ss_pred             ccCCCCCCEEEccCceeccccCC--CcchhcCCCCCCcEEecccCC-CCCcchhhhcCCCCCCEEeccCCccccccCCCC
Q 028394           99 FTPFQQLESLYLIGNNIAGCVEN--EGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKG  175 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~--~~~~~~~~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~  175 (209)
                      +..+++|++|++++|.++ .+|.  .    +..+++|++|++++|+ +++..|..++++++|++|++++|++++..|..+
T Consensus       120 ~~~l~~L~~L~L~~n~l~-~l~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYK-TLGETSL----FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             HTTCTTCSEEECTTCCCS-SSCSSCS----CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             hCCCccCCEEECCCCCCc-ccCchhh----hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            455666666666666665 3443  3    5666777777777763 554445566677777777777777777667777


Q ss_pred             cccCCCCCCCccCCCCCch
Q 028394          176 KYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       176 ~~l~~l~~~~~~~~n~~~~  194 (209)
                      .++.+|.. ..+.+|.++.
T Consensus       195 ~~l~~L~~-L~l~~n~l~~  212 (353)
T 2z80_A          195 KSIQNVSH-LILHMKQHIL  212 (353)
T ss_dssp             TTCSEEEE-EEEECSCSTT
T ss_pred             hccccCCe-ecCCCCcccc
Confidence            77666654 5666666643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.25  E-value=9.2e-12  Score=102.99  Aligned_cols=126  Identities=16%  Similarity=0.010  Sum_probs=91.2

Q ss_pred             cEEEEEcCCCCCCcccccccCCccc--cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLF--TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      +++.|++++|.+....     +..+  ..+++|++|++++|.+++..|......+..+++|++|++++|++++..|..++
T Consensus        92 ~L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            4788888888776332     2234  77899999999999998766532112256789999999999999988888899


Q ss_pred             CCCCCCEEeccCCccccc--cCC--CCcccCCCCCCCccCCCCCc--hhhHH-HHHHHHhh
Q 028394          153 GLSSLRNLSLIGNRLIGS--IDI--KGKYASTLFPCPIFCGSYFT--EQLEV-LIRDLARF  206 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~--iP~--~~~~l~~l~~~~~~~~n~~~--~~~p~-~~~~L~~~  206 (209)
                      .+++|++|+|++|++.|.  +|.  .++.+.+|.. ..+.+|.++  +.++. .++.++++
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~Ls~N~l~~l~~~~~~l~~~l~~L  226 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN-LALRNTGMETPTGVCAALAAAGVQP  226 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS-CBCCSSCCCCHHHHHHHHHHHTCCC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE-EECCCCCCCchHHHHHHHHhcCCCC
Confidence            999999999999998764  432  3367777775 778888886  33332 24555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=1.5e-12  Score=116.90  Aligned_cols=95  Identities=19%  Similarity=0.212  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCCCc-----cccce-EEcCCCCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc
Q 028394           50 NCWVDDENYSDCC-----QWERV-ECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG  123 (209)
Q Consensus        50 ~~W~~~~~~~~~C-----~W~gv-~C~~~~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~  123 (209)
                      ..|..   +.++|     .|.|+ .|.  ..+++.|++++++++.++.     . +  +++|++|+|++|.++ .+| . 
T Consensus        34 ~~W~~---~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp~-----~-l--~~~L~~L~Ls~N~l~-~ip-~-   97 (571)
T 3cvr_A           34 DKWEK---QALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPD-----N-L--PPQITVLEITQNALI-SLP-E-   97 (571)
T ss_dssp             HHHHT---TCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCCS-----C-C--CTTCSEEECCSSCCS-CCC-C-
T ss_pred             HHHhc---cCCccccccchhhhccccc--cCCccEEEeCCCCCCccCH-----h-H--cCCCCEEECcCCCCc-ccc-c-
Confidence            34643   45677     79999 787  3578999999998875432     1 1  245566666666555 444 2 


Q ss_pred             chhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394          124 LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       124 ~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                           .+++|++|++++|++++ +|. +++  +|++|+|++|++++
T Consensus        98 -----~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           98 -----LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             -----CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             -----ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence                 13444555555555543 444 332  44444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.23  E-value=8.1e-12  Score=103.35  Aligned_cols=111  Identities=14%  Similarity=0.037  Sum_probs=66.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccc--cCCCcchhcCCCCCCcEEecccCCCCCcchh--
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDYNHFNNSIFS--  149 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~--  149 (209)
                      .+++.|++++|.+..+     .+..+..+++|++|++++|.+.+.  ++..  ..++.+++|++|++++|+++ .+|.  
T Consensus       145 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~  216 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAF-----SCEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVC  216 (310)
T ss_dssp             SCCCEEEEECCSSCCC-----CTTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHH
T ss_pred             cCCCEEEeeCCCcchh-----hHHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHH
Confidence            3677777877776533     234567788888888888887653  2221  00245666666666666665 2222  


Q ss_pred             --hhcCCCCCCEEeccCCccccccCCCCcccC---CCCCCCccCCCCCc
Q 028394          150 --SLGGLSSLRNLSLIGNRLIGSIDIKGKYAS---TLFPCPIFCGSYFT  193 (209)
Q Consensus       150 --~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~---~l~~~~~~~~n~~~  193 (209)
                        .++.+++|++|+|++|++++.+|..++.+.   +|.. ..+++|.++
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~-L~Ls~N~l~  264 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS-LNLSFAGLE  264 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC-EECCSSCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE-EECCCCCCC
Confidence              245666666777777776666666665553   4442 455555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.23  E-value=1.9e-11  Score=109.68  Aligned_cols=87  Identities=26%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcc-hhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~i-P~~l~  152 (209)
                      .+++.|+|++|.++.+      |..++.+++|+.|+|++|.+++ +| .    ++.+++|++|+|++|++++.+ |..++
T Consensus       463 ~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l~  530 (567)
T 1dce_A          463 LLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPLV  530 (567)
T ss_dssp             TTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             ccCcEeecCccccccc------chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence            4799999999998855      3468899999999999999997 77 5    999999999999999999887 99999


Q ss_pred             CCCCCCEEeccCCccccccC
Q 028394          153 GLSSLRNLSLIGNRLIGSID  172 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP  172 (209)
                      .+++|++|+|++|++++..|
T Consensus       531 ~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          531 SCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GCTTCCEEECTTSGGGGSSS
T ss_pred             cCCCCCEEEecCCcCCCCcc
Confidence            99999999999999997655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.21  E-value=1.2e-11  Score=98.42  Aligned_cols=108  Identities=13%  Similarity=0.023  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCCC-CCcccccccCCccccCCCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhh
Q 028394           74 GRVIKLDLRDTR-NWESAEWYMNASLFTPFQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l  151 (209)
                      .+++.|++++|. ++.+.     +..|..+++|++|++++ |.+++..+..    +..+++|++|++++|++++ +|. +
T Consensus        55 ~~L~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l~~L~~L~l~~n~l~~-lp~-~  123 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLE-----SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKELPLLKFLGIFNTGLKM-FPD-L  123 (239)
T ss_dssp             TTCCEEEEECCSSCCEEC-----TTTEESCTTCCEEEEEEETTCCEECTTS----EECCTTCCEEEEEEECCCS-CCC-C
T ss_pred             CCCcEEeCCCCCCcceeC-----HhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCCCCCCEEeCCCCCCcc-ccc-c
Confidence            467777887775 65433     23455666666666666 6666433333    5566666666666666654 444 5


Q ss_pred             cCCCCCC---EEeccCC-ccccccCCCCcccCCCC-CCCccCCCCCc
Q 028394          152 GGLSSLR---NLSLIGN-RLIGSIDIKGKYASTLF-PCPIFCGSYFT  193 (209)
Q Consensus       152 ~~l~~L~---~L~L~~N-~l~G~iP~~~~~l~~l~-~~~~~~~n~~~  193 (209)
                      +.+++|+   +|++++| ++++-.|..+..+.+|. . ..+.+|.++
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~-L~l~~n~l~  169 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT-LKLYNNGFT  169 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE-EECCSCCCC
T ss_pred             ccccccccccEEECCCCcchhhcCcccccchhcceeE-EEcCCCCCc
Confidence            5555555   5555555 55533333344444444 3 344444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.21  E-value=8e-12  Score=109.97  Aligned_cols=113  Identities=18%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC-CCCCCcEEecccCCCCCcchhhhcC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS-RLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .++.|++++|.+..+.     +..+..+++|+.|+|++|.+++.+|..    +. .+++|++|+|++|.+++. |. +..
T Consensus       121 ~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~~l~~L~~L~Ls~N~l~~~-~~-~~~  189 (487)
T 3oja_A          121 GKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVV  189 (487)
T ss_dssp             SCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred             CCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHH----HhhhCCcccEEecCCCccccc-cc-ccc
Confidence            3444444444444322     223455666666666666666655554    43 566666666666666644 22 234


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                      +++|++|+|++|.+++ +|..+..+.+|.. ..+++|.+++ +|..+.
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~-L~Ls~N~l~~-lp~~l~  234 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLVL-IEKALR  234 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCCE-ECTTCC
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccE-EEecCCcCcc-cchhhc
Confidence            6667777777777765 4444666666654 6666666664 444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=5.4e-12  Score=104.90  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccC-CCCC-cchhhhcCCCCCCEEeccCC-ccccc-cCCC
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN-HFNN-SIFSSLGGLSSLRNLSLIGN-RLIGS-IDIK  174 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L~L~~N-~l~G~-iP~~  174 (209)
                      +..+++|++|++++|.+++.+|..    ++.+++|++|++++| .+++ .+|..+.++++|++|++++| .+++. +|..
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  189 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  189 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence            556778888888888777766665    777788888888887 6765 36666777788888888888 77764 6666


Q ss_pred             CcccC-CCCCCCccCCC--CCc-hhhHHHHHHHHhhh
Q 028394          175 GKYAS-TLFPCPIFCGS--YFT-EQLEVLIRDLARFL  207 (209)
Q Consensus       175 ~~~l~-~l~~~~~~~~n--~~~-~~~p~~~~~L~~~~  207 (209)
                      +..+. +|.. ..+.+|  .++ +.+|..+..++++.
T Consensus       190 ~~~l~~~L~~-L~l~~~~~~~~~~~l~~~~~~~~~L~  225 (336)
T 2ast_B          190 VAHVSETITQ-LNLSGYRKNLQKSDLSTLVRRCPNLV  225 (336)
T ss_dssp             HHHSCTTCCE-EECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             HHhcccCCCE-EEeCCCcccCCHHHHHHHHhhCCCCC
Confidence            67777 6664 666666  455 66777776666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.20  E-value=8.5e-12  Score=104.00  Aligned_cols=121  Identities=18%  Similarity=0.049  Sum_probs=82.5

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|++++|.+..+     .+..+..+++|+.|++++|.+++..|..    +..+++|++|++++|+++ .+|..++.+
T Consensus       194 ~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          194 TLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             SCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             CCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            445555555555432     2345777888888888888888766655    788888888999888888 788888888


Q ss_pred             CCCCEEeccCCccccccCCCCccc------CCCCCCCccCCCCCc--hhhHHHHHHHHhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYA------STLFPCPIFCGSYFT--EQLEVLIRDLARF  206 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l------~~l~~~~~~~~n~~~--~~~p~~~~~L~~~  206 (209)
                      ++|++|++++|++++.-+..+...      ..+. ...+.+|.+.  +..|..+..++++
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~-~L~l~~N~~~~~~~~~~~~~~l~~L  322 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN-GISLFNNPVPYWEVQPATFRCVTDR  322 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBS-EEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred             ccCCEEECCCCCCCccChhHcccccccccccccc-ceEeecCcccccccCcccccccchh
Confidence            889999998888886544444433      2222 3566777776  4445545544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.19  E-value=7.9e-12  Score=103.78  Aligned_cols=116  Identities=17%  Similarity=0.047  Sum_probs=73.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCCcchhhhcC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .++.|++++|.+..+.     +..+..+++|++|++++|.+++..|..    + ..+++|++|++++|++++. |. ...
T Consensus       121 ~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~-~~-~~~  189 (317)
T 3o53_A          121 GKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVV  189 (317)
T ss_dssp             SCEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred             CCCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccc-cc-ccc
Confidence            3445555555544322     234556777777777777777655554    4 3577778888888877744 33 334


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLA  204 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~  204 (209)
                      +++|++|++++|++++ +|..+..+.+|.. ..+.+|.++ .+|..+..++
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~-L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTW-ISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSE-EECTTSCCC-EECTTCCCCT
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccE-EECcCCccc-chhhHhhcCC
Confidence            7788888888888874 5666777777764 777777777 3555444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.19  E-value=2.3e-11  Score=100.08  Aligned_cols=85  Identities=25%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|++|++++|.+++ ++ .    +..+++|++|++++|++++.  +.++.+++|++|++++|++++..|  +..+
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l  177 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  177 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence            4445555666666665553 22 2    55666666666666666643  345666666666666666665433  5555


Q ss_pred             CCCCCCCccCCCCCch
Q 028394          179 STLFPCPIFCGSYFTE  194 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~  194 (209)
                      .+|.. ..+++|.+++
T Consensus       178 ~~L~~-L~L~~N~i~~  192 (291)
T 1h6t_A          178 TKLQN-LYLSKNHISD  192 (291)
T ss_dssp             TTCCE-EECCSSCCCB
T ss_pred             CccCE-EECCCCcCCC
Confidence            55553 5556666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.19  E-value=3e-11  Score=99.40  Aligned_cols=113  Identities=20%  Similarity=0.227  Sum_probs=91.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+..       +..+++|++|++++|.+++ +|.     +..+++|++|++++|++++.  +.+..
T Consensus        68 ~~L~~L~L~~n~l~~~~~-------l~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~L~~n~i~~~--~~l~~  132 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKD-LSS-----LKDLKKLKSLSLEHNGISDI--NGLVH  132 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-GGG-----GTTCTTCCEEECTTSCCCCC--GGGGG
T ss_pred             CCCCEEEccCCccCCCcc-------cccCCCCCEEECCCCcCCC-Chh-----hccCCCCCEEECCCCcCCCC--hhhcC
Confidence            578899999998875432       7789999999999999985 443     89999999999999999863  46889


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|++++.  ..+..+.+|.. ..+++|.+++..|  +..++++
T Consensus       133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~-L~L~~N~l~~~~~--l~~l~~L  180 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI--TVLSRLTKLDT-LSLEDNQISDIVP--LAGLTKL  180 (291)
T ss_dssp             CTTCCEEECCSSCCCCC--GGGGGCTTCSE-EECCSSCCCCCGG--GTTCTTC
T ss_pred             CCCCCEEEccCCcCCcc--hhhccCCCCCE-EEccCCccccchh--hcCCCcc
Confidence            99999999999999964  56788888875 7888998887655  5554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.18  E-value=5.7e-11  Score=99.18  Aligned_cols=108  Identities=20%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+..       +..+++|++|++++|.+++ ++ .    +..+++|++|++++|++++. | .+..
T Consensus       221 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~~-~-~~~~  285 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISD-IN-A----VKDLTKLKMLNVGSNQISDI-S-VLNN  285 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-CG-G----GTTCTTCCEEECCSSCCCCC-G-GGGG
T ss_pred             CcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCC-Ch-h----HhcCCCcCEEEccCCccCCC-h-hhcC
Confidence            467788888887764432       4456666666666666653 22 2    55566666666666666542 2 3555


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhH
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p  197 (209)
                      +++|++|++++|++++..|..+..+.+|.. ..+.+|.+++..|
T Consensus       286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~  328 (347)
T 4fmz_A          286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTT-LFLSQNHITDIRP  328 (347)
T ss_dssp             CTTCSEEECCSSCCCGGGHHHHHTCTTCSE-EECCSSSCCCCGG
T ss_pred             CCCCCEEECcCCcCCCcChhHhhccccCCE-EEccCCccccccC
Confidence            666666666666666555555555555553 5555555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=2.6e-11  Score=102.06  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=86.7

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (209)
Q Consensus        61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~  131 (209)
                      -|+|..|.|...         ...++.|+|++|.++.++     +..|.++++|++|+|++|.+.+.+|..   .|.+++
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~   79 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLP   79 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEEC-----TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCT
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcC-----HHHHcCCCCCCEEECcCCCCCCccChh---Hhhcch
Confidence            378999999741         136889999999998654     456889999999999999998888865   367888


Q ss_pred             CCcE-EecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCc
Q 028394          132 NLKF-LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK  176 (209)
Q Consensus       132 ~L~~-L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~  176 (209)
                      ++++ +.++.|+++...|..|..+++|++|++++|++++..+..+.
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~  125 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI  125 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc
Confidence            7765 67778999977788899999999999999999865444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.17  E-value=5.3e-11  Score=106.83  Aligned_cols=89  Identities=15%  Similarity=0.085  Sum_probs=63.5

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCC-------CEEeccCCccccccCCCC
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL-------RNLSLIGNRLIGSIDIKG  175 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L-------~~L~L~~N~l~G~iP~~~  175 (209)
                      ++|++|+|++|.+++ +|.     +.  ++|++|+|++|+++ .+|. +..  +|       ++|+|++|+|+ .||..+
T Consensus       160 ~~L~~L~Ls~N~L~~-lp~-----l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LPE-----LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-----CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             CCcCEEECCCCCCCC-cch-----hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence            345555555555543 443     22  67777777777777 6666 544  66       88888888888 688888


Q ss_pred             cccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          176 KYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       176 ~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      +++.+|.. ..+.+|.+++.+|..+..+..
T Consensus       227 ~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          227 LSLDPTCT-IILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GGSCTTEE-EECCSSSCCHHHHHHHHHHHH
T ss_pred             hcCCCCCE-EEeeCCcCCCcCHHHHHHhhc
Confidence            88888875 889999999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.16  E-value=4.5e-11  Score=99.04  Aligned_cols=80  Identities=29%  Similarity=0.426  Sum_probs=41.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+.       .+..+++|++|++++|.+++ +|.     +..+++|++|++++|++++..+  ++.
T Consensus        85 ~~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~  149 (308)
T 1h6u_A           85 TKITELELSGNPLKNVS-------AIAGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITNISP--LAG  149 (308)
T ss_dssp             CSCCEEECCSCCCSCCG-------GGTTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred             CCCCEEEccCCcCCCch-------hhcCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCcCcc--ccC
Confidence            46788888888776442       24445555555555555553 221     4444445555555554443222  444


Q ss_pred             CCCCCEEeccCCccc
Q 028394          154 LSSLRNLSLIGNRLI  168 (209)
Q Consensus       154 l~~L~~L~L~~N~l~  168 (209)
                      +++|++|++++|+++
T Consensus       150 l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCccEEEccCCcCC
Confidence            444444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=5.4e-11  Score=99.60  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      .+++.|+|++ |.++.+.     +..|..+++|+.|+|++|+|++..|..    |.++++|++|+|++|+|++..|..+.
T Consensus        31 ~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             SCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             CCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHH----hcCCcCCCEEeCCCCccceeCHHHcc
Confidence            4799999996 9887553     456889999999999999999987777    89999999999999999976666666


Q ss_pred             CCCCCCEEeccCCcccccc
Q 028394          153 GLSSLRNLSLIGNRLIGSI  171 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~i  171 (209)
                      .++ |++|+|.+|.|...-
T Consensus       102 ~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A          102 GLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SCC-CCEEECCSSCCCCCG
T ss_pred             cCC-ceEEEeeCCCccCCC
Confidence            666 999999999998643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.16  E-value=5.8e-11  Score=98.33  Aligned_cols=103  Identities=22%  Similarity=0.271  Sum_probs=65.8

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+..       +..+++|++|++++|.+++ +| .    +..+++|++|++++|++++ +|. +..
T Consensus        63 ~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~l~~-~~-~----~~~l~~L~~L~l~~n~l~~-~~~-l~~  127 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP-------LKNLTKITELELSGNPLKN-VS-A----IAGLQSIKTLDLTSTQITD-VTP-LAG  127 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCCCSC-CG-G----GTTCTTCCEEECTTSCCCC-CGG-GTT
T ss_pred             CCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCcCCC-ch-h----hcCCCCCCEEECCCCCCCC-chh-hcC
Confidence            466777777776664422       5667777777777777764 33 3    6777777777777777764 333 677


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|++|++++|++++..|  +..+.+|.. ..+++|.+++
T Consensus       128 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~-L~l~~n~l~~  165 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNISP--LAGLTNLQY-LSIGNAQVSD  165 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCE-EECCSSCCCC
T ss_pred             CCCCCEEECCCCccCcCcc--ccCCCCccE-EEccCCcCCC
Confidence            7777777777777765333  555555553 5555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.15  E-value=3.1e-11  Score=100.81  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=53.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.++++++.+..+..       +..+++|++|++++|.+++. |.     +..+++|++|++++|++++ + +.+..+
T Consensus       200 ~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~-~~~~~l  264 (347)
T 4fmz_A          200 SLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDL-SP-----LANLSQLTWLEIGTNQISD-I-NAVKDL  264 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-GG-----GTTCTTCCEEECCSSCCCC-C-GGGTTC
T ss_pred             ccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCC-cc-----hhcCCCCCEEECCCCccCC-C-hhHhcC
Confidence            34455555554443211       33445555555555555432 21     4455555555555555543 2 234555


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      ++|++|++++|++++ +| .+..+.+|.. ..+.+|.+++..|..+..+++
T Consensus       265 ~~L~~L~l~~n~l~~-~~-~~~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          265 TKLKMLNVGSNQISD-IS-VLNNLSQLNS-LFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGGGCTTCSE-EECCSSCCCGGGHHHHHTCTT
T ss_pred             CCcCEEEccCCccCC-Ch-hhcCCCCCCE-EECcCCcCCCcChhHhhcccc
Confidence            555555555555553 22 2444444443 444555555555555544443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=2.5e-13  Score=105.54  Aligned_cols=110  Identities=19%  Similarity=0.176  Sum_probs=87.3

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+.       .+..+++|++|++++|.++ .+|..    +..+++|++|++++|++++ +| .++.
T Consensus        48 ~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~l~-~l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             TTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEEEC-SCSSH----HHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             CCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCCcc-cccch----hhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            47889999998876532       4677899999999999998 67776    7777899999999999986 56 5888


Q ss_pred             CCCCCEEeccCCccccccC-CCCcccCCCCCCCccCCCCCchhhHH
Q 028394          154 LSSLRNLSLIGNRLIGSID-IKGKYASTLFPCPIFCGSYFTEQLEV  198 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP-~~~~~l~~l~~~~~~~~n~~~~~~p~  198 (209)
                      +++|++|++++|++++--+ ..+..+.+|.. ..+.+|.+++.+|.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~-L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLED-LLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSE-EEECSCHHHHHHHT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCE-EEecCCcccccccc
Confidence            8999999999999985222 36677777775 77888888877664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.11  E-value=8.3e-11  Score=102.49  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|+.|++++|.+++..|      +..+++|++|++++|++++..|  ++.+++|++|++++|++++.  ..+.++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l  352 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANL  352 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred             ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccC
Confidence            3445555555555555554222      4555666666666666665444  45556666666666665543  244555


Q ss_pred             CCCCCCCccCCCCCchhhH
Q 028394          179 STLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~~~p  197 (209)
                      .+|.. ..+.+|.+++.+|
T Consensus       353 ~~L~~-L~l~~n~l~~~~~  370 (466)
T 1o6v_A          353 TNINW-LSAGHNQISDLTP  370 (466)
T ss_dssp             TTCCE-EECCSSCCCBCGG
T ss_pred             CCCCE-EeCCCCccCccch
Confidence            55543 5556666666555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=1.1e-10  Score=101.80  Aligned_cols=89  Identities=19%  Similarity=0.148  Sum_probs=54.3

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc--ccCCCCccc--
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG--SIDIKGKYA--  178 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G--~iP~~~~~l--  178 (209)
                      ++|++|++++|.+++ +|..       +++|++|++++|+++ .+|.   .+++|++|++++|+++|  .+|.+++++  
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~-------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~  384 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL-------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM  384 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             CcCCEEECCCCcccc-cccc-------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence            478888888888885 6653       478999999999998 5777   57899999999999999  899999888  


Q ss_pred             -----------CCCCCCCccCCCCCch--hhHHHHHHHH
Q 028394          179 -----------STLFPCPIFCGSYFTE--QLEVLIRDLA  204 (209)
Q Consensus       179 -----------~~l~~~~~~~~n~~~~--~~p~~~~~L~  204 (209)
                                 .+|.. ..+.+|.+++  .+|..+..|+
T Consensus       385 n~~~~~i~~~~~~L~~-L~ls~N~l~~~~~iP~sl~~L~  422 (454)
T 1jl5_A          385 NSHLAEVPELPQNLKQ-LHVETNPLREFPDIPESVEDLR  422 (454)
T ss_dssp             CC-------------------------------------
T ss_pred             cccccccccccCcCCE-EECCCCcCCccccchhhHhhee
Confidence                       56664 7888999997  8998887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.10  E-value=7.2e-11  Score=106.67  Aligned_cols=85  Identities=25%  Similarity=0.320  Sum_probs=50.8

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|+.|+|++|.+++ +| .    +..+++|+.|+|++|++++.  ..++.+++|+.|+|++|++++..|  +..+
T Consensus       105 l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l  174 (605)
T 1m9s_A          105 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL  174 (605)
T ss_dssp             STTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred             hccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccC
Confidence            4555666666666666653 22 2    56666666666666666643  446666666666666666665555  5555


Q ss_pred             CCCCCCCccCCCCCch
Q 028394          179 STLFPCPIFCGSYFTE  194 (209)
Q Consensus       179 ~~l~~~~~~~~n~~~~  194 (209)
                      .+|.. +.+++|.+++
T Consensus       175 ~~L~~-L~Ls~N~i~~  189 (605)
T 1m9s_A          175 TKLQN-LYLSKNHISD  189 (605)
T ss_dssp             TTCCE-EECCSSCCCB
T ss_pred             CCCCE-EECcCCCCCC
Confidence            55553 5566666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.10  E-value=2e-11  Score=103.78  Aligned_cols=94  Identities=19%  Similarity=0.136  Sum_probs=63.4

Q ss_pred             cccCCCCCCEEEccCceec----cccCCCcchhcCCCCCCcEEecccCCCCCc----chhhh--cCCCCCCEEeccCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIA----GCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSL--GGLSSLRNLSLIGNRL  167 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l--~~l~~L~~L~L~~N~l  167 (209)
                      .+..+++|++|+|++|.++    +.+|..    +..+++|++|+|++|++++.    +|..+  +.+++|++|+|++|.+
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            3556677777777777775    456655    67777777777777777765    55555  3377777777777777


Q ss_pred             cc----ccCCCC-cccCCCCCCCccCCCCCchhh
Q 028394          168 IG----SIDIKG-KYASTLFPCPIFCGSYFTEQL  196 (209)
Q Consensus       168 ~G----~iP~~~-~~l~~l~~~~~~~~n~~~~~~  196 (209)
                      ++    .+|..+ .++.+|.. ..+.+|.+++..
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~-L~l~~N~l~~~~  319 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLF-LELNGNRFSEED  319 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCE-EECTTSBSCTTS
T ss_pred             CHHHHHHHHHHHHhcCCCceE-EEccCCcCCcch
Confidence            76    477666 44666664 666777777655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.10  E-value=1.1e-10  Score=105.35  Aligned_cols=113  Identities=23%  Similarity=0.239  Sum_probs=94.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.+..+.+       +..+++|+.|+|++|.+++ +| .    +..+++|++|+|++|++++ +| .+..
T Consensus        65 ~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~-l~-~l~~  129 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLDENKIKD-LS-S----LKDLKKLKSLSLEHNGISD-IN-GLVH  129 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCC-CT-T----STTCTTCCEEECTTSCCCC-CG-GGGG
T ss_pred             CCCCEEEeeCCCCCCChh-------hccCCCCCEEECcCCCCCC-Ch-h----hccCCCCCEEEecCCCCCC-Cc-cccC
Confidence            578999999999876532       7789999999999999985 44 4    8999999999999999996 44 5899


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|+.|+|++|++++.  ..+..+.+|.. +.+++|.+++..|  +..+++|
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~-L~Ls~N~l~~~~~--l~~l~~L  177 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDT-LSLEDNQISDIVP--LAGLTKL  177 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSE-EECCSSCCCCCGG--GTTCTTC
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCE-EECcCCcCCCchh--hccCCCC
Confidence            99999999999999974  56788888875 8889999998776  5555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=9.3e-11  Score=95.10  Aligned_cols=102  Identities=24%  Similarity=0.249  Sum_probs=60.5

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+..       +..+++|++|++++|.+++ +|.     +.. ++|++|++++|++++ +| .++.
T Consensus        63 ~~L~~L~L~~N~i~~~~~-------l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~~-~l~~  126 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSP-------LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-TD-SLIH  126 (263)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-SG-GGTT
T ss_pred             CCCCEEECCCCccCCChh-------hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-Ch-hhcC
Confidence            467788888887765432       5667777777777777764 443     222 566666666666654 23 3556


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|++|++++|++++ +| .+..+.+|.. ..+.+|.+++
T Consensus       127 l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~-L~L~~N~i~~  164 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKS-IV-MLGFLSKLEV-LDLHGNEITN  164 (263)
T ss_dssp             CTTCCEEECTTSCCCB-CG-GGGGCTTCCE-EECTTSCCCB
T ss_pred             cccccEEECCCCcCCC-Ch-HHccCCCCCE-EECCCCcCcc
Confidence            6666666666666654 33 4555555543 4555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.08  E-value=1.7e-10  Score=100.58  Aligned_cols=63  Identities=21%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +..+++|++|++++|++++..|  ++.+++|++|++++|++++..|  +..+.+|.. ..+.+|.+++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~-L~l~~n~l~~  345 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR-LFFYNNKVSD  345 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE-EECCSSCCCC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE-eECCCCccCC
Confidence            3444444444444444443322  4444555555555555554433  344444442 4444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=3.8e-10  Score=102.25  Aligned_cols=119  Identities=18%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             CcEEEEEcCCCCCCccccc-------ccCCccc----cCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCC
Q 028394           74 GRVIKLDLRDTRNWESAEW-------YMNASLF----TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH  142 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~-------~~~~~~~----~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~  142 (209)
                      ..++.|++++|.+..+...       .+....+    ..+++|+.|++++|.+++ +|.       .+++|++|++++|+
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNR  252 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCC
Confidence            4566777777766543321       0111111    113678888999998885 663       35789999999999


Q ss_pred             CCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          143 FNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       143 l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++ .+|.   .+++|++|+|++|+++ .||..+.++.+|.. ..+.+|.+++.+|..+..++..
T Consensus       253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~-L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETT-VNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCE-EECCSCCCCHHHHHHHHHHHHS
T ss_pred             CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCE-EEecCCCCCCcCHHHHHhcccc
Confidence            98 5776   6789999999999999 89999999999875 8899999999999999988753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=2.7e-11  Score=102.95  Aligned_cols=127  Identities=19%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceec--c---ccCCCcchhcCCCCCCcEEecccCCCC----C
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIA--G---CVENEGLDTLSRLNNLKFLYLDYNHFN----N  145 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--g---~ip~~~~~~~~~l~~L~~L~Ls~N~l~----g  145 (209)
                      +++.|++++|.+...+--.+ ...+..+++|+.|++++|.++  |   .+|..    +..+++|++|+|++|+++    +
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~----l~~~~~L~~L~Ls~n~l~~~g~~  234 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG----LAYCQELKVLDLQDNTFTHLGSS  234 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT----GGGCTTCCEEECCSSCCHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH----hhcCCCccEEECcCCCCCcHHHH
Confidence            45555555555531110000 012445778888888888887  3   34434    788899999999999996    6


Q ss_pred             cchhhhcCCCCCCEEeccCCccccc----cCCCC--cccCCCCCCCccCCCCCch----hhHHHH-HHHHhhh
Q 028394          146 SIFSSLGGLSSLRNLSLIGNRLIGS----IDIKG--KYASTLFPCPIFCGSYFTE----QLEVLI-RDLARFL  207 (209)
Q Consensus       146 ~iP~~l~~l~~L~~L~L~~N~l~G~----iP~~~--~~l~~l~~~~~~~~n~~~~----~~p~~~-~~L~~~~  207 (209)
                      .+|..+..+++|++|+|++|.+++.    +|..+  +++.+|.. ..+.+|.+++    .+|..+ .+++++.
T Consensus       235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~-L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE-EECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE-EECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence            7888889999999999999999876    66665  33677764 7788999998    588877 4455543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.07  E-value=3.4e-10  Score=98.81  Aligned_cols=100  Identities=18%  Similarity=0.104  Sum_probs=57.3

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|++++|.++.+        .++.+++|++|++++|.+++ +|      ++.+++|++|++++|++++ +|  ++.+
T Consensus        65 ~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~-~~------~~~l~~L~~L~L~~N~l~~-l~--~~~l  126 (457)
T 3bz5_A           65 GLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTN-LD------VTPLTKLTYLNCDTNKLTK-LD--VSQN  126 (457)
T ss_dssp             TCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSC-CC------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred             CCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCce-ee------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence            455555555555432        14556666666666666664 22      5566666666666666664 33  5666


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhh
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQL  196 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~  196 (209)
                      ++|++|++++|++++ +|  ++++.+|.. ..+.+|.+.+.+
T Consensus       127 ~~L~~L~l~~N~l~~-l~--l~~l~~L~~-L~l~~n~~~~~~  164 (457)
T 3bz5_A          127 PLLTYLNCARNTLTE-ID--VSHNTQLTE-LDCHLNKKITKL  164 (457)
T ss_dssp             TTCCEEECTTSCCSC-CC--CTTCTTCCE-EECTTCSCCCCC
T ss_pred             CcCCEEECCCCccce-ec--cccCCcCCE-EECCCCCccccc
Confidence            666666666666665 33  555555553 455555444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.04  E-value=3.2e-10  Score=99.00  Aligned_cols=88  Identities=18%  Similarity=0.050  Sum_probs=54.9

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +..+++|+.|++++|.+++.   .    ++.+++|++|++++|++++ +|  ++.+++|++|++++|+++|..+..+.++
T Consensus       187 l~~l~~L~~L~l~~N~l~~~---~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL---D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCee---c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence            44566666666666666643   2    6677777777777777776 55  6777777777777777776544444444


Q ss_pred             C-------CCCCCCccCCCCCchhhH
Q 028394          179 S-------TLFPCPIFCGSYFTEQLE  197 (209)
Q Consensus       179 ~-------~l~~~~~~~~n~~~~~~p  197 (209)
                      .       ++. ...+.+|.+.+.+|
T Consensus       257 ~~L~l~~n~L~-~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          257 TTLHCIQTDLL-EIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CEEECTTCCCS-CCCCTTCTTCCEEE
T ss_pred             CEEeccCCCCC-EEECCCCccCCccc
Confidence            3       222 24455555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=8.2e-13  Score=102.57  Aligned_cols=99  Identities=20%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+..+++|++|++++|.+++ +| .    +..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-C----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-c----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            47789999999999999996 77 5    899999999999999999 789888888999999999999997 67 5777


Q ss_pred             cCCCCCCCccCCCCCchhhH-HHHHHHHhh
Q 028394          178 ASTLFPCPIFCGSYFTEQLE-VLIRDLARF  206 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~~~p-~~~~~L~~~  206 (209)
                      +.+|.. ..+.+|.+++-.+ ..+..++++
T Consensus       114 l~~L~~-L~l~~N~i~~~~~~~~l~~l~~L  142 (198)
T 1ds9_A          114 LVNLRV-LYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             HHHSSE-EEESEEECCCHHHHHHHTTTTTC
T ss_pred             CCCCCE-EECCCCcCCchhHHHHHhcCCCC
Confidence            888775 7788888885322 455555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.01  E-value=7.2e-10  Score=89.81  Aligned_cols=111  Identities=20%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+++++.+.++.       .+..+++|++|++++|.+++. |+     +..+++|++|++++|++++ +|.. ..
T Consensus        41 ~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~L~~N~i~~~-~~-----l~~l~~L~~L~L~~N~l~~-l~~~-~~  105 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA-------GMQFFTNLKELHLSHNQISDL-SP-----LKDLTKLEELSVNRNRLKN-LNGI-PS  105 (263)
T ss_dssp             TTCSEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCC-GG-----GTTCSSCCEEECCSSCCSC-CTTC-CC
T ss_pred             CcCcEEECcCCCcccch-------HHhhCCCCCEEECCCCccCCC-hh-----hccCCCCCEEECCCCccCC-cCcc-cc
Confidence            47889999999887553       367799999999999999864 43     7899999999999999995 5553 33


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                       ++|++|++++|++++ +| .+..+.+|.. ..+++|.+++- + .+..+++
T Consensus       106 -~~L~~L~L~~N~l~~-~~-~l~~l~~L~~-L~Ls~N~i~~~-~-~l~~l~~  151 (263)
T 1xeu_A          106 -ACLSRLFLDNNELRD-TD-SLIHLKNLEI-LSIRNNKLKSI-V-MLGFLSK  151 (263)
T ss_dssp             -SSCCEEECCSSCCSB-SG-GGTTCTTCCE-EECTTSCCCBC-G-GGGGCTT
T ss_pred             -CcccEEEccCCccCC-Ch-hhcCcccccE-EECCCCcCCCC-h-HHccCCC
Confidence             999999999999997 44 5788888875 88889988863 3 3444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.00  E-value=1.9e-10  Score=100.42  Aligned_cols=57  Identities=25%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      ++|++|++++|.+++ +| +    ++++++|++|++++|++++ +|..+   ++|++|++++|++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~  187 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-E----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE  187 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-C----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS
T ss_pred             CCCCEEECcCCCCCC-Cc-c----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc
Confidence            345555555555553 44 2    4555555555555555543 33321   244444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.88  E-value=8.2e-11  Score=96.01  Aligned_cols=24  Identities=4%  Similarity=-0.173  Sum_probs=15.7

Q ss_pred             CCccccceEEcCCCCcEEEEEcCC
Q 028394           60 DCCQWERVECNDTTGRVIKLDLRD   83 (209)
Q Consensus        60 ~~C~W~gv~C~~~~~~v~~L~L~~   83 (209)
                      ..|+|.|+.|+....+|+.+...+
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~   99 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSS   99 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEEC
T ss_pred             HHHhcCcEEECCCCCEEEEEEecC
Confidence            357899999986444665554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.86  E-value=1.5e-09  Score=98.29  Aligned_cols=67  Identities=25%  Similarity=0.242  Sum_probs=43.9

Q ss_pred             CCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          131 NNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      ++|++|++++|++++ +|   ..+++|++|++++|+|+ .||.   .+.+|.. ..+.+|.++ .+|..+..++++.
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~-L~Ls~N~L~-~lp~~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS-LSVYRNQLT-RLPESLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE-EECCSSCCC-SCCGGGGGSCTTC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE-EeCCCCCCC-cCCHHHhhccccC
Confidence            556666666666664 45   34567777777777777 5666   3344443 667788888 7787777766653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.86  E-value=2.4e-10  Score=96.44  Aligned_cols=122  Identities=19%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCC-----CCCCEEEccCceeccccCCCcchhcCCC-CCCcEEecccCCCCCcch
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPF-----QQLESLYLIGNNIAGCVENEGLDTLSRL-NNLKFLYLDYNHFNNSIF  148 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~~~l-~~L~~L~Ls~N~l~g~iP  148 (209)
                      +++.|+|++|.+...+.     ..+..+     ++|++|+|++|.+++..+......+..+ ++|++|++++|++++..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNS-----DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEECcCCCCCHHHH-----HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            57777777776653321     112222     7778888888877765444311113344 678888888888876666


Q ss_pred             hhhc----C-CCCCCEEeccCCccccc----cCCCCcccC-CCCCCCccCCCCCchhhHHHHHH
Q 028394          149 SSLG----G-LSSLRNLSLIGNRLIGS----IDIKGKYAS-TLFPCPIFCGSYFTEQLEVLIRD  202 (209)
Q Consensus       149 ~~l~----~-l~~L~~L~L~~N~l~G~----iP~~~~~l~-~l~~~~~~~~n~~~~~~p~~~~~  202 (209)
                      ..+.    . .++|++|+|++|++++.    ++..+.... +|.. ..+++|.+++..+..+..
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~n~l~~~~~~~l~~  189 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS-LNLRGNNLASKNCAELAK  189 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE-EECTTSCGGGSCHHHHHH
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE-eeecCCCCchhhHHHHHH
Confidence            5543    2 35788888888888743    333333343 4543 677788887766665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.81  E-value=3.3e-10  Score=97.84  Aligned_cols=65  Identities=17%  Similarity=0.040  Sum_probs=27.9

Q ss_pred             CCCCCcEEecccCCCCCcchhhhcC-----CCCCCEEeccCCcccc----ccCCCCcccCCCCCCCccCCCCCch
Q 028394          129 RLNNLKFLYLDYNHFNNSIFSSLGG-----LSSLRNLSLIGNRLIG----SIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       129 ~l~~L~~L~Ls~N~l~g~iP~~l~~-----l~~L~~L~L~~N~l~G----~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      .+++|++|++++|++++..+..+..     .++|++|++++|++++    .+|..+..+.+|.. ..+.+|.+++
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~-L~l~~N~i~~  412 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE-LDLSNNCLGD  412 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE-EECCSSSCCH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE-EECCCCCCCH
Confidence            3344444444444444333332221     3344444444444443    44444444444442 4444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.77  E-value=6.9e-10  Score=95.85  Aligned_cols=39  Identities=31%  Similarity=0.331  Sum_probs=18.8

Q ss_pred             CCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCcccc
Q 028394          131 NNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       131 ~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      ++|++|++++|++++    .+|..+..+++|++|++++|++++
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            344455555555443    444444444455555555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.75  E-value=2.8e-09  Score=89.89  Aligned_cols=119  Identities=19%  Similarity=0.126  Sum_probs=88.8

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCC-CCCEEEccCceeccccCCCcchhcCCC-----CCCcEEecccCCCCCcc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQ-QLESLYLIGNNIAGCVENEGLDTLSRL-----NNLKFLYLDYNHFNNSI  147 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~l-----~~L~~L~Ls~N~l~g~i  147 (209)
                      ..++.|+|++|.++..+...+ ...+..++ +|++|+|++|.+++..+..    +..+     ++|++|+|++|++++..
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccCCCccEEECcCCcCChHH
Confidence            459999999999875432100 03466788 8999999999998765554    5543     89999999999999888


Q ss_pred             hhhhcC----C-CCCCEEeccCCccccccCCCCccc-----CCCCCCCccCCCCCchhhHH
Q 028394          148 FSSLGG----L-SSLRNLSLIGNRLIGSIDIKGKYA-----STLFPCPIFCGSYFTEQLEV  198 (209)
Q Consensus       148 P~~l~~----l-~~L~~L~L~~N~l~G~iP~~~~~l-----~~l~~~~~~~~n~~~~~~p~  198 (209)
                      +..++.    + ++|++|++++|++++..+..+...     ++|.. ..+++|.++...+.
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS-LNLRGNDLGIKSSD  156 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE-EECTTSCGGGSCHH
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE-EEccCCcCCHHHHH
Confidence            775544    4 899999999999987766555432     45554 78899999964433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.67  E-value=3.3e-08  Score=82.97  Aligned_cols=104  Identities=11%  Similarity=0.047  Sum_probs=80.6

Q ss_pred             EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh-hhcCCCC
Q 028394           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS  156 (209)
Q Consensus        78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~  156 (209)
                      .++.+++++++++.      .+  .+++++|+|++|+++ .||+.   .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus        13 ~v~C~~~~Lt~iP~------~l--~~~l~~L~Ls~N~i~-~i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X           13 VFLCQESKVTEIPS------DL--PRNAIELRFVLTKLR-VIQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             EEEEESTTCCSCCT------TC--CTTCSEEEEESCCCS-EECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             EEEecCCCCCccCc------Cc--CCCCCEEEccCCcCC-CcCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            46778888876542      22  357999999999998 56653   289999999999999999888875 5789998


Q ss_pred             CCE-EeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          157 LRN-LSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       157 L~~-L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      |++ +.+++|++++-.|..+..+.+|.. ..+.+|.++.
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~-L~l~~n~l~~  118 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQY-LLISNTGIKH  118 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCE-EEEEEECCSS
T ss_pred             hhhhhcccCCcccccCchhhhhcccccc-cccccccccc
Confidence            875 667789999777788888888865 5566666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=1.9e-08  Score=81.94  Aligned_cols=67  Identities=27%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             CCCCCCEEEccCceecc--ccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCC--CCCEEeccCCccccccCC
Q 028394          101 PFQQLESLYLIGNNIAG--CVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLS--SLRNLSLIGNRLIGSIDI  173 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~G~iP~  173 (209)
                      ++++|+.|+|++|.+++  .+|..    +..+++|++|+|++|++++.  ..+..+.  +|++|+|++|.+++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            47788888888888887  55555    67888888888888888864  3344444  888888888888887774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.62  E-value=6.9e-09  Score=88.34  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             CCCCCEEEccCceeccc----cCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc---
Q 028394          102 FQQLESLYLIGNNIAGC----VENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS---  170 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~---  170 (209)
                      .+.|+.|+|++|.++..    ++..    +..+++|++|+|++|+++.    .++..+...++|++|+|++|.++..   
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHH----HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHH----HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            45566666666666431    2222    4556667777777776654    2344555666677777777766542   


Q ss_pred             -cCCCCcccCCCCCCCccCCCCCchhhHHHHHH
Q 028394          171 -IDIKGKYASTLFPCPIFCGSYFTEQLEVLIRD  202 (209)
Q Consensus       171 -iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~  202 (209)
                       ++..+....+|.. ..+++|.++..-...+..
T Consensus       230 ~l~~~L~~~~~L~~-L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          230 ALARAAREHPSLEL-LHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             HHHHHHHHCSSCCE-EECTTSSCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCE-EeccCCCCCHHHHHHHHH
Confidence             2233333444443 566666666555444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.54  E-value=1e-08  Score=87.33  Aligned_cols=118  Identities=16%  Similarity=0.092  Sum_probs=83.1

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhc-CCCCCCcEEecccCCCCC----cch
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTL-SRLNNLKFLYLDYNHFNN----SIF  148 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~-~~l~~L~~L~Ls~N~l~g----~iP  148 (209)
                      ..++.|+|++|.++..+.    ......+++|+.|+|++|.++..-.......+ ...+.|++|+|++|+++.    .++
T Consensus       101 ~~L~~L~Ls~n~l~~~~~----~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGL----RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCCCCHHHH----HHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHH----HHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            478899999988763221    11223466899999999998644222200112 356889999999999975    355


Q ss_pred             hhhcCCCCCCEEeccCCccccc----cCCCCcccCCCCCCCccCCCCCchhh
Q 028394          149 SSLGGLSSLRNLSLIGNRLIGS----IDIKGKYASTLFPCPIFCGSYFTEQL  196 (209)
Q Consensus       149 ~~l~~l~~L~~L~L~~N~l~G~----iP~~~~~l~~l~~~~~~~~n~~~~~~  196 (209)
                      ..+..+++|++|+|++|.++..    ++..+...++|.. ..+++|.++..-
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~-L~Ls~N~i~~~g  227 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE-LNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE-EECCSSCCCHHH
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe-EECCCCCCCHHH
Confidence            6678899999999999999753    3555566667664 788999998643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=8e-08  Score=73.74  Aligned_cols=130  Identities=14%  Similarity=0.049  Sum_probs=86.1

Q ss_pred             CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394           73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I  147 (209)
Q Consensus        73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i  147 (209)
                      ...++.|+|++| .+..-+...+ ...+...++|++|+|++|.+...-.......+...+.|++|+|++|+++..    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            357999999998 8763221111 123455788999999999986421111011255668899999999999863    5


Q ss_pred             hhhhcCCCCCCEEec--cCCcccccc----CCCCcccCCCCCCCccCCCCCc--hhhHHHHHHHH
Q 028394          148 FSSLGGLSSLRNLSL--IGNRLIGSI----DIKGKYASTLFPCPIFCGSYFT--EQLEVLIRDLA  204 (209)
Q Consensus       148 P~~l~~l~~L~~L~L--~~N~l~G~i----P~~~~~l~~l~~~~~~~~n~~~--~~~p~~~~~L~  204 (209)
                      ...+...++|++|+|  ++|.++..-    ...+...++|.. ..+.+|.+.  |.+...+.+-+
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~-L~L~~n~i~~~~~i~~~L~~N~  177 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK-FGYHFTQQGPRLRASNAMMNNN  177 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE-EECCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE-EeccCCCCChHHHHHHHHHhhH
Confidence            667788889999999  889997653    333334456664 677888886  33455554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.14  E-value=1.7e-07  Score=83.30  Aligned_cols=65  Identities=9%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             CCCCCCEEEccCceeccc----cCCCcchhcCCCCCCcEEecccCCCC----CcchhhhcCCCCCCEEeccCCcccc
Q 028394          101 PFQQLESLYLIGNNIAGC----VENEGLDTLSRLNNLKFLYLDYNHFN----NSIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~l~~L~~L~Ls~N~l~----g~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      .+++|++|+|++|.+++.    ++..    ...+++|++|++++|.++    +.++..+.++++|++|++++|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            567888888888887654    2222    456677778888887776    3455556677778888877777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=5.6e-06  Score=68.61  Aligned_cols=99  Identities=17%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCc-EEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLK-FLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~-~L~Ls~N~l~g~iP~~l~  152 (209)
                      .+++.++|++|+++.++     ...|.++.+|+.+++++| +. .|++.   .|.++++|+ .+++.+ +++..-+..|.
T Consensus       226 ~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n-i~-~I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN-LK-TIGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             TTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             CCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc-cc-eehHH---HhhCChhccEEEEEcc-cceEEchhhhh
Confidence            37889999998887665     456888999999999998 65 56654   488999999 999988 77755567899


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCCCC
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFP  183 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~  183 (209)
                      +|++|+.+++++|+++.--+..+.++.+|..
T Consensus       295 ~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          295 GCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            9999999999999998433346666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.12  E-value=1.2e-07  Score=84.14  Aligned_cols=122  Identities=12%  Similarity=0.109  Sum_probs=79.6

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccC-CC-CCCEEEccCce-ecc-ccCCCcchhcCCCCCCcEEecccCCCCCc----
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTP-FQ-QLESLYLIGNN-IAG-CVENEGLDTLSRLNNLKFLYLDYNHFNNS----  146 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~-l~-~L~~L~Ls~N~-l~g-~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----  146 (209)
                      +++.|+|+++.++...     ...+.. ++ +|++|+++++. ++. .++..    ...+++|++|+|++|.+++.    
T Consensus       113 ~L~~L~L~~~~i~~~~-----~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~~~~~~~~~  183 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLD-----LDRLAKARADDLETLKLDKCSGFTTDGLLSI----VTHCRKIKTLLMEESSFSEKDGKW  183 (592)
T ss_dssp             TCCEEEEESCBCCHHH-----HHHHHHHHGGGCCEEEEESCEEEEHHHHHHH----HHHCTTCSEEECTTCEEECCCSHH
T ss_pred             CCCeEEeeccEecHHH-----HHHHHHhccccCcEEECcCCCCcCHHHHHHH----HhhCCCCCEEECccccccCcchhH
Confidence            5667777766554211     011222 23 37888887765 211 11111    34788899999999988766    


Q ss_pred             chhhhcCCCCCCEEeccCCccc----cccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          147 IFSSLGGLSSLRNLSLIGNRLI----GSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       147 iP~~l~~l~~L~~L~L~~N~l~----G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      ++.....+++|++|++++|.++    +.++..+.++.+|.. ..+.+|.+.+ +|..+..++++.
T Consensus       184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~-L~L~~~~~~~-l~~~~~~~~~L~  246 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS-VKVGDFEILE-LVGFFKAAANLE  246 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE-EECSSCBGGG-GHHHHHHCTTCC
T ss_pred             HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE-EeccCccHHH-HHHHHhhhhHHH
Confidence            6666778899999999999987    566666667777764 6677777765 777777766553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.93  E-value=5.9e-06  Score=63.18  Aligned_cols=101  Identities=17%  Similarity=0.083  Sum_probs=72.7

Q ss_pred             ccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCccccc---
Q 028394           99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS---  170 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G~---  170 (209)
                      +...+.|+.|+|++| .+...--......+...+.|++|+|++|+++..    +...+...++|++|+|++|.++..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            556789999999999 886321111111267788999999999999753    455566778999999999999864   


Q ss_pred             -cCCCCcccCCCCCCCcc--CCCCCchhhHHHH
Q 028394          171 -IDIKGKYASTLFPCPIF--CGSYFTEQLEVLI  200 (209)
Q Consensus       171 -iP~~~~~l~~l~~~~~~--~~n~~~~~~p~~~  200 (209)
                       +...+.....|.. ..+  .+|.++.+....+
T Consensus       112 ~l~~~L~~n~~L~~-L~L~~~~N~i~~~g~~~l  143 (185)
T 1io0_A          112 ALVEALQSNTSLIE-LRIDNQSQPLGNNVEMEI  143 (185)
T ss_dssp             HHHHGGGGCSSCCE-EECCCCSSCCCHHHHHHH
T ss_pred             HHHHHHHhCCCceE-EEecCCCCCCCHHHHHHH
Confidence             4555666667664 777  7899986544333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.84  E-value=1.7e-06  Score=76.72  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=36.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCcccc-CCCCCCEEEccCc-eeccc-cCCCcchhcCCCCCCcEEecccCCCCCcchhh
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFT-PFQQLESLYLIGN-NIAGC-VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSS  150 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N-~l~g~-ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~  150 (209)
                      .+++.|+|+++.++....     ..+. .+++|++|++++| .++.. ++..    ..++++|++|++++|.+++..+..
T Consensus       105 ~~L~~L~L~~~~~~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~----~~~~~~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCL-----ELIAKSFKNFKVLVLSSCEGFSTDGLAAI----AATCRNLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             TTCCEEEEESCBCCHHHH-----HHHHHHCTTCCEEEEESCEEEEHHHHHHH----HHHCTTCCEEECTTCEEECCCGGG
T ss_pred             CCCCeEEeeCcEEcHHHH-----HHHHHhCCCCcEEeCCCcCCCCHHHHHHH----HHhCCCCCEEeCcCCccCCcchHH
Confidence            357777777765542110     0111 2445555555555 23221 2221    224455555555555544433322


Q ss_pred             hc----CCCCCCEEeccCCc
Q 028394          151 LG----GLSSLRNLSLIGNR  166 (209)
Q Consensus       151 l~----~l~~L~~L~L~~N~  166 (209)
                      +.    .+++|++|++++|.
T Consensus       176 l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHhhcCCcCcEEEecccC
Confidence            22    33445555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.78  E-value=2.8e-06  Score=75.28  Aligned_cols=95  Identities=14%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             cCCCCCCEEEccCceeccccCCCcchhcCC-CCCCcEEecccCCCCCcchhhh-cCCCCCCEEeccCCccccccCC-CCc
Q 028394          100 TPFQQLESLYLIGNNIAGCVENEGLDTLSR-LNNLKFLYLDYNHFNNSIFSSL-GGLSSLRNLSLIGNRLIGSIDI-KGK  176 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~L~~N~l~G~iP~-~~~  176 (209)
                      ..+++|+.|++++ .+++..+..    +.. +++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+. ...
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~  503 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS  503 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred             hhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence            3456677777755 444433332    444 7889999999999887666555 6788999999999998765554 334


Q ss_pred             ccCCCCCCCccCCCCCchhhHHHH
Q 028394          177 YASTLFPCPIFCGSYFTEQLEVLI  200 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~~~~~~p~~~  200 (209)
                      .+.+|.. ..+.+|.++.+..+.+
T Consensus       504 ~l~~L~~-L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          504 KLETMRS-LWMSSCSVSFGACKLL  526 (594)
T ss_dssp             GGGGSSE-EEEESSCCBHHHHHHH
T ss_pred             hCCCCCE-EeeeCCCCCHHHHHHH
Confidence            4667664 6677887765443333

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=1.8e-05  Score=65.56  Aligned_cols=85  Identities=18%  Similarity=0.098  Sum_probs=66.9

Q ss_pred             CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCC-EEeccCCccccccC-CCCcccC
Q 028394          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR-NLSLIGNRLIGSID-IKGKYAS  179 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~-~L~L~~N~l~G~iP-~~~~~l~  179 (209)
                      +++|+.++|++|+++ .||+.   .|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++ .|+ ..+.++.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcc-eecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCc
Confidence            789999999999998 67765   4889999999999998 7745556799999999 999988 666 454 5677777


Q ss_pred             CCCCCCccCCCCCch
Q 028394          180 TLFPCPIFCGSYFTE  194 (209)
Q Consensus       180 ~l~~~~~~~~n~~~~  194 (209)
                      +|.. ..+..|.++.
T Consensus       298 ~L~~-l~l~~n~i~~  311 (329)
T 3sb4_A          298 NLRY-VLATGDKITT  311 (329)
T ss_dssp             TEEE-EEECSSCCCE
T ss_pred             cCCE-EEeCCCccCc
Confidence            7764 5555666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.45  E-value=7.5e-05  Score=56.85  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCce-eccccCCCcchhcCCC----CCCcEEecccCC-CCCcc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNN-IAGCVENEGLDTLSRL----NNLKFLYLDYNH-FNNSI  147 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~l----~~L~~L~Ls~N~-l~g~i  147 (209)
                      -++++||+++..++..+-     ..+..+++|+.|+|+++. ++..    +...++.+    ++|++|+|+++. +|..=
T Consensus        61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~----gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDG----CLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHH----HHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHH----HHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            479999999988764332     235679999999999985 5432    12225554    479999999975 87644


Q ss_pred             hhhhcCCCCCCEEeccCCc
Q 028394          148 FSSLGGLSSLRNLSLIGNR  166 (209)
Q Consensus       148 P~~l~~l~~L~~L~L~~N~  166 (209)
                      =..+.++++|++|++++..
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            4567889999999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.39  E-value=0.00034  Score=50.39  Aligned_cols=55  Identities=22%  Similarity=0.192  Sum_probs=32.2

Q ss_pred             EEEcCCCCCC--cccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCC
Q 028394           78 KLDLRDTRNW--ESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN  144 (209)
Q Consensus        78 ~L~L~~~~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~  144 (209)
                      .++.++++++  .++.      .+  -++|+.|+|++|+|+ .+|..   .|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~------~l--p~~l~~L~Ls~N~l~-~l~~~---~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT------AF--PVDTTELVLTGNNLT-ALPPG---LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCS------CC--CTTCSEEECTTSCCS-SCCTT---TGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCC------CC--CcCCCEEECCCCcCC-ccChh---hhhhccccCEEEecCCCee
Confidence            5677777665  4432      11  125677777777776 34443   2556666777777777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.21  E-value=0.00025  Score=59.91  Aligned_cols=100  Identities=15%  Similarity=0.100  Sum_probs=62.5

Q ss_pred             CCCCCCEEEccC--ceeccccCCCcc-hhc--CCCCCCcEEecccCCCCCcchhhhc---CCCCCCEEeccCCccccc--
Q 028394          101 PFQQLESLYLIG--NNIAGCVENEGL-DTL--SRLNNLKFLYLDYNHFNNSIFSSLG---GLSSLRNLSLIGNRLIGS--  170 (209)
Q Consensus       101 ~l~~L~~L~Ls~--N~l~g~ip~~~~-~~~--~~l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~l~G~--  170 (209)
                      .+++|+.|+|+.  |...|....... ..+  ..+++|++|+|.+|.+++..+..+.   .+++|++|+|+.|.+++.  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            577888888753  222121000000 002  3478899999988888765555443   577899999999988763  


Q ss_pred             --cCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394          171 --IDIKGKYASTLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       171 --iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                        ++..+.++.+|.. ..+..|.++...-..+.
T Consensus       297 ~~L~~~L~~l~~L~~-L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKF-INMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHHTTHHHHTTCSE-EECCSBBCCHHHHHHHH
T ss_pred             HHHHhhcccCCcceE-EECCCCcCCHHHHHHHH
Confidence              5555566677764 66777877765444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.14  E-value=7.3e-05  Score=63.24  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             CCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCccccc
Q 028394          101 PFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS  170 (209)
Q Consensus       101 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G~  170 (209)
                      .+++|++|+|.+|.+....+.. ......+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~-la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEM-FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHH-HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHH-HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            4789999999999987554332 11124688999999999999874    455556789999999999998754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.48  E-value=0.0014  Score=49.70  Aligned_cols=84  Identities=14%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCC-CCCcchhhhcCC----CCCCEEeccCCc-cccccCCCCc
Q 028394          103 QQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNH-FNNSIFSSLGGL----SSLRNLSLIGNR-LIGSIDIKGK  176 (209)
Q Consensus       103 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-l~G~iP~~~~  176 (209)
                      .+|+.||++++.++..    +...+..+++|++|+|+++. ++..-=..++.+    ++|++|+|+++. ++-.==..+.
T Consensus        61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            4799999999987532    33348899999999999995 775444456664    479999999974 7643223345


Q ss_pred             ccCCCCCCCccCCCC
Q 028394          177 YASTLFPCPIFCGSY  191 (209)
Q Consensus       177 ~l~~l~~~~~~~~n~  191 (209)
                      ++.+|.. ..+.++.
T Consensus       137 ~~~~L~~-L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKY-LFLSDLP  150 (176)
T ss_dssp             GCTTCCE-EEEESCT
T ss_pred             cCCCCCE-EECCCCC
Confidence            5666654 4444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.39  E-value=0.0056  Score=43.85  Aligned_cols=57  Identities=16%  Similarity=0.052  Sum_probs=45.9

Q ss_pred             CEEEccCceec-cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394          106 ESLYLIGNNIA-GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       106 ~~L~Ls~N~l~-g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      ..++-+++.++ ..+|..    +  .++|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888886 357754    3  246899999999999666667889999999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.17  E-value=0.013  Score=49.82  Aligned_cols=66  Identities=15%  Similarity=0.155  Sum_probs=37.0

Q ss_pred             CccccCCCCCCEEEccCceec----cccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC
Q 028394           96 ASLFTPFQQLESLYLIGNNIA----GCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN  165 (209)
Q Consensus        96 ~~~~~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N  165 (209)
                      ...|.++++|+.+++.+|.+.    ..|+..   .|.++++|+.+++. +.++-.-...|.++++|+.+++..|
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            345666777777777776653    123332   25666666666666 3354223335566666666666433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.16  E-value=0.0026  Score=49.18  Aligned_cols=92  Identities=10%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394           73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I  147 (209)
Q Consensus        73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i  147 (209)
                      ...++.|+|+++ .+..-+...+ ...+..-+.|+.|+|++|.+...--...-..+..-+.|++|+|+.|+++..    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            457889999885 6642221101 112444578999999999986432222011134457899999999999753    3


Q ss_pred             hhhhcCCCCCCEEeccCC
Q 028394          148 FSSLGGLSSLRNLSLIGN  165 (209)
Q Consensus       148 P~~l~~l~~L~~L~L~~N  165 (209)
                      -..+..-+.|++|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            334555567999999865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.04  E-value=0.017  Score=49.21  Aligned_cols=69  Identities=12%  Similarity=0.150  Sum_probs=54.1

Q ss_pred             cCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394           94 MNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus        94 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      ++...|.++++|+.+++.+ .++ .|+..   .|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+.-
T Consensus       291 I~~~aF~~c~~L~~l~l~~-~i~-~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          291 IHPYCLEGCPKLARFEIPE-SIR-ILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCC-EECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             ECHHHhhCCccCCeEEeCC-ceE-EEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            4456788999999999995 465 56554   3888999999999655 664445678899 99999999998764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.25  E-value=0.0088  Score=46.16  Aligned_cols=72  Identities=11%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             ccCCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEecccCCCCC----cchhhhcCCCCCCEEeccCCccccc
Q 028394           99 FTPFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN----SIFSSLGGLSSLRNLSLIGNRLIGS  170 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~l~G~  170 (209)
                      +.+-+.|+.|+|++| .+...--......+..-+.|+.|+|++|++..    .+-..+..-+.|++|+|+.|.+...
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            344578999999986 66421000001226667889999999999974    3444555668999999999999754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.85  E-value=0.21  Score=41.77  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KG  175 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~  175 (209)
                      ..+..+.+|+.+.+..+ ++ .|++.   .|.++++|+.+++..+ ++-.-..+|.++++|+.+++..| ++ .|+. .+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF  362 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VK-FIGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAF  362 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTB
T ss_pred             ccccccccccccccccc-cc-eechh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHh
Confidence            34666777888877654 33 34433   2677777888877643 55222346777788888877655 44 4443 33


Q ss_pred             cccCCCC
Q 028394          176 KYASTLF  182 (209)
Q Consensus       176 ~~l~~l~  182 (209)
                      .++.+|.
T Consensus       363 ~~C~~L~  369 (394)
T 4fs7_A          363 QGCINLK  369 (394)
T ss_dssp             TTCTTCC
T ss_pred             hCCCCCC
Confidence            4444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.81  E-value=0.41  Score=40.00  Aligned_cols=39  Identities=15%  Similarity=0.238  Sum_probs=18.2

Q ss_pred             cCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCc
Q 028394          127 LSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNR  166 (209)
Q Consensus       127 ~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~  166 (209)
                      |.++++|+.+.+..+ ++-.-..+|.++++|+.+++.+|.
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            445555555555432 331222345555555555555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.67  E-value=0.74  Score=38.40  Aligned_cols=79  Identities=11%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCC-CC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDI-KG  175 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~-~~  175 (209)
                      ..|.++..|+.+.+.. .++ .|+..   .|.++.+|+.+++..+ ++-.-..+|.++++|+.+.+..+ ++ .|+. .+
T Consensus       282 ~aF~~c~~L~~i~l~~-~i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF  353 (394)
T 4gt6_A          282 GAFMNCPALQDIEFSS-RIT-ELPES---VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAF  353 (394)
T ss_dssp             TTTTTCTTCCEEECCT-TCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGG
T ss_pred             cccccccccccccCCC-ccc-ccCce---eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHh
Confidence            3466677777777753 333 45544   3778888999888754 55233456888899999988654 44 4543 34


Q ss_pred             cccCCCCC
Q 028394          176 KYASTLFP  183 (209)
Q Consensus       176 ~~l~~l~~  183 (209)
                      .++++|..
T Consensus       354 ~~C~~L~~  361 (394)
T 4gt6_A          354 SNCTALNN  361 (394)
T ss_dssp             TTCTTCCE
T ss_pred             hCCCCCCE
Confidence            55566653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.45  E-value=0.32  Score=40.28  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=34.3

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccC
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG  164 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~  164 (209)
                      .+..+..|+.+.+..+ +. .++..   .+.++++|+.+.+.++.++-.-...|.++++|+.+.+..
T Consensus       258 aF~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ccceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            4555666666666443 22 23332   255666666666666666533334566666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=89.44  E-value=1.3  Score=36.46  Aligned_cols=64  Identities=13%  Similarity=0.108  Sum_probs=44.3

Q ss_pred             ccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCC
Q 028394           97 SLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGN  165 (209)
Q Consensus        97 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N  165 (209)
                      ..|..+.+|+.+.+.++.++ .|++.   .|.++.+|+.++|..+ ++-.-..+|.++++|+.+.+..+
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIE-TLEPR---VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             cccccccccccccccccccc-eehhh---hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            35677888888888877776 45543   3778888888888654 55222346788888888877543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.97  E-value=1.4  Score=36.66  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEecc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLI  163 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~  163 (209)
                      .|.++.+|+.+++..+ ++ .|+..   .|.++++|+.+++..| ++-.-..+|.++++|+.+++.
T Consensus       315 aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          315 AFESCTSLVSIDLPYL-VE-EIGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hhcCCCCCCEEEeCCc-cc-EEhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            3445555555555433 32 23322   2455555555555444 332222345555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 17/127 (13%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 39  RHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASL 98
            +  ++   L           +  Q E +        +  L L      + +        
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP------- 324

Query: 99  FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLR 158
            +   +L+ L+   N +        + +L+ L N+ +L   +N  ++     L  L+ + 
Sbjct: 325 VSSLTKLQRLFFANNKV------SDVSSLANLTNINWLSAGHNQISDLT--PLANLTRIT 376

Query: 159 NLSLIGN 165
            L L   
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 92  WYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSL 151
              + S  +  + L  L L  NNI        +  +S L  L+ L+   N    S  SSL
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANNKV--SDVSSL 347

Query: 152 GGLSSLRNLSLIGNRLIGSIDIKG 175
             L+++  LS   N++     +  
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLAN 371

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 27 CLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQ--WERVECNDTTG--RVIKLDLR 82
          C  Q++ ALLQ++    +   L + W+     +DCC   W  V C+  T   RV  LDL 
Sbjct: 3  CNPQDKQALLQIKKDLGNPTTLSS-WLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 83 D 83
           
Sbjct: 59 G 59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 5/128 (3%)

Query: 40  HFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLF 99
              N           + N +       +   D +            +        +    
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240

Query: 100 TPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRN 159
              + L  L L  N I G +       L++L  L  L + +N+    I    G L     
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQG----LTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295

Query: 160 LSLIGNRL 167
            +   N+ 
Sbjct: 296 SAYANNKC 303

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 8/141 (5%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
                       A LQ     +               S+           T    +    
Sbjct: 92  LSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT 151

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                        + +      +L +L    N I        +  L+ L NL  ++L  N
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI------SDISPLASLPNLIEVHLKNN 205

Query: 142 HFNNSIFSSLGGLSSLRNLSL 162
             ++   S L   S+L  ++L
Sbjct: 206 QISD--VSPLANTSNLFIVTL 224

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 1/153 (0%)

Query: 22  WWSEGCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCCQWERVECNDTTGRVIKLDL 81
             +E    Q    L  L         LQ+  +  +        +      T+  +  L  
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 82  RDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYN 141
                    +     +L              +     +       L+ L NL  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 142 HFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIK 174
               +I     G   L    L GN  + + +I 
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 4/95 (4%)

Query: 105 LESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIG 164
              L L  N I    + +       L NL  L L  N  +     +   L  L  L L  
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 165 NRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVL 199
           N+L    +   K    L                 L
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.23
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.96
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.9
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.89
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.68
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.58
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.51
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.07
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.93
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.8e-30  Score=211.73  Aligned_cols=169  Identities=24%  Similarity=0.403  Sum_probs=146.3

Q ss_pred             CCcHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCc--cccceEEcCC--CCcEEEEEcCCCCCCcccccccCCccccC
Q 028394           26 GCLEQERYALLQLRHFFNDDQCLQNCWVDDENYSDCC--QWERVECNDT--TGRVIKLDLRDTRNWESAEWYMNASLFTP  101 (209)
Q Consensus        26 ~~~~~~~~aL~~~~~~~~~~~~~l~~W~~~~~~~~~C--~W~gv~C~~~--~~~v~~L~L~~~~l~~~~~~~~~~~~~~~  101 (209)
                      -|.++|++||++||+++.+|. .+++|..   +.|||  .|.||+|+..  ..||+.|+|+++++.....+   ++.+++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~l---p~~l~~   74 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI---PSSLAN   74 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC---CGGGGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCC---ChHHhc
Confidence            388999999999999998875 7899965   68999  4999999863  34899999999988743222   456899


Q ss_pred             CCCCCEEEccC-ceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCC
Q 028394          102 FQQLESLYLIG-NNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYAST  180 (209)
Q Consensus       102 l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~  180 (209)
                      |++|++|+|++ |+++|.+|+.    ++++++|++|+|++|++++..|..+..+.+|+++++++|.+.+.+|.+++++..
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~----i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             Cccccccccccccccccccccc----cccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            99999999997 8999999998    999999999999999999988888999999999999999999999999999988


Q ss_pred             CCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          181 LFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       181 l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +.. ..+.+|.+++.+|+.+..+..+
T Consensus       151 L~~-l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         151 LVG-ITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CCE-EECCSSCCEEECCGGGGCCCTT
T ss_pred             cce-eecccccccccccccccccccc
Confidence            875 7788899998888877766554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=4.8e-16  Score=118.87  Aligned_cols=125  Identities=20%  Similarity=0.227  Sum_probs=106.5

Q ss_pred             CccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCC
Q 028394           61 CCQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLN  131 (209)
Q Consensus        61 ~C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~  131 (209)
                      -|+|..|.|...         ...++.|+|++|.++...    ....|..+++|+.|+|++|.+.+..+..    +..++
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~----~~~~f~~l~~L~~L~L~~N~i~~~~~~~----~~~~~   78 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS----SDGLFGRLPHLVKLELKRNQLTGIEPNA----FEGAS   78 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC----CSCSGGGCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccc----cccccCCCceEeeeeccccccccccccc----ccccc
Confidence            478999999741         146899999999986432    2456888999999999999999877777    89999


Q ss_pred             CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +|++|+|++|++++..|..|.++++|++|+|++|+|++-.|..+..+.++.. ..+.+|.+..
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~-l~L~~N~~~~  140 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS-LNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE-EECTTCCBCC
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc-cccccccccc
Confidence            9999999999999777888999999999999999999877777888888875 7888998875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.2e-14  Score=102.41  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCC
Q 028394           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSL  157 (209)
Q Consensus        78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L  157 (209)
                      .|+|++|+++.+.       .+..+++|++|++++|.++ .+|+.    ++.+++|++|++++|+++ .+|. ++++++|
T Consensus         2 ~L~Ls~n~l~~l~-------~l~~l~~L~~L~ls~N~l~-~lp~~----~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLTVLC-------HLEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALE-NVDG-VANLPRL   67 (124)
T ss_dssp             EEECTTSCCSSCC-------CGGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCC-CCGG-GTTCSSC
T ss_pred             EEEcCCCCCCCCc-------ccccCCCCCEEECCCCccC-cchhh----hhhhhccccccccccccc-ccCc-ccccccc
Confidence            5899999988553       2677999999999999998 68877    899999999999999998 4554 8999999


Q ss_pred             CEEeccCCccccccC--CCCcccCCCCCCCccCCCCCc
Q 028394          158 RNLSLIGNRLIGSID--IKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       158 ~~L~L~~N~l~G~iP--~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      ++|++++|+++. +|  ..+..+.+|.. ..+.+|.++
T Consensus        68 ~~L~l~~N~i~~-~~~~~~l~~~~~L~~-L~l~~N~i~  103 (124)
T d1dcea3          68 QELLLCNNRLQQ-SAAIQPLVSCPRLVL-LNLQGNSLC  103 (124)
T ss_dssp             CEEECCSSCCCS-SSTTGGGGGCTTCCE-EECTTSGGG
T ss_pred             CeEECCCCccCC-CCCchhhcCCCCCCE-EECCCCcCC
Confidence            999999999984 44  35677777764 778888886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.44  E-value=7.2e-15  Score=119.80  Aligned_cols=121  Identities=21%  Similarity=0.296  Sum_probs=104.2

Q ss_pred             CcEEEEEcCC-CCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhc
Q 028394           74 GRVIKLDLRD-TRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~-~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~  152 (209)
                      .+++.|+|++ |++.  +.+   |+.++++++|++|+|++|++.+..|..    +..+..|+++++++|++.+.+|..++
T Consensus        76 ~~L~~L~Ls~~N~l~--g~i---P~~i~~L~~L~~L~Ls~N~l~~~~~~~----~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          76 PYLNFLYIGGINNLV--GPI---PPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             TTCSEEEEEEETTEE--SCC---CGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             ccccccccccccccc--ccc---ccccccccccchhhhcccccccccccc----ccchhhhcccccccccccccCchhhc
Confidence            4678889986 6654  221   456889999999999999999988877    89999999999999999999999999


Q ss_pred             CCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHH
Q 028394          153 GLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDL  203 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L  203 (209)
                      ++++|+++++++|.++|.+|..++.+..+........|.+++..|..+..+
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998887667788888888877766554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.42  E-value=8.1e-14  Score=106.21  Aligned_cols=125  Identities=15%  Similarity=0.089  Sum_probs=101.4

Q ss_pred             cceEEcCCCCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCC
Q 028394           65 ERVECNDTTGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFN  144 (209)
Q Consensus        65 ~gv~C~~~~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~  144 (209)
                      .+-+|..     +.++.+++++++++.      .+  -+++++|+|++|.+++.++..   .|.++++|++|+|++|+++
T Consensus         4 ~~C~C~~-----~~v~Cs~~~L~~iP~------~l--p~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~   67 (192)
T d1w8aa_           4 AMCHCEG-----TTVDCTGRGLKEIPR------DI--PLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLT   67 (192)
T ss_dssp             TTSEEET-----TEEECTTSCCSSCCS------CC--CTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCC
T ss_pred             CCCEEcC-----CEEEEeCCCcCccCC------CC--CCCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccc
Confidence            4556753     368999999986643      22  258999999999998766554   3788999999999999999


Q ss_pred             CcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          145 NSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       145 g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +..+..+..+++|++|+|++|++++-.|..+.++.+|.. ..+.+|.+++-.|+.+..++++
T Consensus        68 ~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~-L~L~~N~l~~i~~~~f~~l~~L  128 (192)
T d1w8aa_          68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT-LNLYDNQISCVMPGSFEHLNSL  128 (192)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE-EECCSSCCCEECTTSSTTCTTC
T ss_pred             cccccccccccccceeeeccccccccCHHHHhCCCcccc-cccCCccccccCHHHhcCCccc
Confidence            999999999999999999999999766777889999885 8899999998666666555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.7e-13  Score=99.63  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .++..|+|++|.++.+..      .+..+++|+.|+|++|.++ .++.     +..+++|++|++++|+++...+..+..
T Consensus        18 ~~lr~L~L~~n~I~~i~~------~~~~l~~L~~L~Ls~N~i~-~l~~-----~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIEN------LGATLDQFDAIDFSDNEIR-KLDG-----FPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             TSCEEEECTTSCCCSCCC------GGGGTTCCSEEECCSSCCC-EECC-----CCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CcCcEEECCCCCCCccCc------cccccccCCEEECCCCCCC-ccCC-----cccCcchhhhhcccccccCCCcccccc
Confidence            468899999999986643      3566899999999999998 5653     889999999999999999655555678


Q ss_pred             CCCCCEEeccCCccccccCC--CCcccCCCCCCCccCCCCCchhh---HHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDI--KGKYASTLFPCPIFCGSYFTEQL---EVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~--~~~~l~~l~~~~~~~~n~~~~~~---p~~~~~L~~~  206 (209)
                      +++|++|++++|+++ .++.  .+..+.+|.. ..+.+|.++..-   +..+..++++
T Consensus        86 l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~-L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          86 LPDLTELILTNNSLV-ELGDLDPLASLKSLTY-LCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE-EECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             ccccccceecccccc-ccccccccccccccch-hhcCCCccccccchHHHHHHHCCCc
Confidence            999999999999997 3443  5667777764 778888876432   3345555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-12  Score=104.73  Aligned_cols=92  Identities=22%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .|..+++|+.|++++|++++..|..    +.++++|+++++++|++++..|..|.++++|++|++++|++++..|..+++
T Consensus       148 ~f~~~~~L~~L~l~~N~l~~l~~~~----f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         148 TFRDLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             HhccccchhhcccccCcccccchhh----hccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            3445555666666666665433333    555666666666666666555666666666666666666666555555555


Q ss_pred             cCCCCCCCccCCCCCch
Q 028394          178 ASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~  194 (209)
                      +.+|.. ..+.+|.+..
T Consensus       224 ~~~L~~-L~l~~N~l~C  239 (284)
T d1ozna_         224 LRALQY-LRLNDNPWVC  239 (284)
T ss_dssp             CTTCCE-EECCSSCEEC
T ss_pred             ccccCE-EEecCCCCCC
Confidence            555553 5555555553

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.2e-12  Score=102.53  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+++++.+..+.     ...+....+|+.+++++|.+++..+..    +..+++|++|++++|++++..|..|.+
T Consensus       105 ~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~l~l~~N~l~~i~~~~----f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELG-----PGLFRGLAALQYLYLQDNALQALPDDT----FRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccCCEEecCCccccccc-----ccccchhcccchhhhccccccccChhH----hccccchhhcccccCcccccchhhhcc
Confidence            46889999998876432     345677889999999999998654555    788999999999999999877888999


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARFL  207 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~~  207 (209)
                      +++|+++++++|++++..|..+.++.++.. .++.+|.+++..|..++.+.++.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~-L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMT-LYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCSCCCHHHHTTCTTCC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhccc-ccccccccccccccccccccccC
Confidence            999999999999999988999999999885 88899999998888887766553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-11  Score=90.49  Aligned_cols=89  Identities=19%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             ccCCCCCCEEEccCce-eccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           99 FTPFQQLESLYLIGNN-IAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      +..+++|+.|++++|+ ++ .++..   .|.++++|+.|++++|+++...|..|..+++|++|+|++|+|+ .+|.....
T Consensus        27 l~~l~~l~~L~l~~n~~l~-~i~~~---~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~  101 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQ-HLELR---DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ  101 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCC-EECGG---GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred             ccCccccCeeecCCCcccc-ccCch---hhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhc
Confidence            4456666777775543 55 33322   2666677777777777776555566667777777777777776 56655544


Q ss_pred             cCCCCCCCccCCCCCc
Q 028394          178 ASTLFPCPIFCGSYFT  193 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~  193 (209)
                      ..++.. ..+.+|.+.
T Consensus       102 ~~~l~~-L~L~~Np~~  116 (156)
T d2ifga3         102 GLSLQE-LVLSGNPLH  116 (156)
T ss_dssp             SCCCCE-EECCSSCCC
T ss_pred             cccccc-cccCCCccc
Confidence            444443 556666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.4e-11  Score=96.59  Aligned_cols=114  Identities=22%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             CcEEEEEcCCCCCCccccc------------------ccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcE
Q 028394           74 GRVIKLDLRDTRNWESAEW------------------YMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKF  135 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~------------------~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~  135 (209)
                      ..++.|+|++|.+......                  .+....+..+.+++.|++++|.+++..+..    +..+++|+.
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~----~~~l~~l~~  152 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEK  152 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecccc----ccccccchh
Confidence            4677777777766432211                  112233455667777777777777433333    678899999


Q ss_pred             EecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          136 LYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       136 L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      +++++|++++..|..|+.+++|++|+|++|+|+ .||..+..+.+|.. ..+.+|++.
T Consensus       153 l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~-L~L~~Np~~  208 (266)
T d1p9ag_         153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF-AFLHGNPWL  208 (266)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE-EECCSCCBC
T ss_pred             cccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCE-EEecCCCCC
Confidence            999999999888888999999999999999999 89999999888874 778888887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.6e-12  Score=99.95  Aligned_cols=124  Identities=19%  Similarity=0.088  Sum_probs=82.3

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc--------------------chhcCCCCC
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG--------------------LDTLSRLNN  132 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~l~~  132 (209)
                      -.+++.|+|++|.++.+..       ++.+++|++|++++|++++ +|...                    ...+..+.+
T Consensus        54 l~~L~~L~L~~N~l~~l~~-------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  125 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQV-------DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE  125 (266)
T ss_dssp             CTTCCEEECTTSCCCEEEC-------CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT
T ss_pred             ccccccccccccccccccc-------ccccccccccccccccccc-cccccccccccccccccccccceeeccccccccc
Confidence            3579999999999876543       3456667777777776653 23330                    001344555


Q ss_pred             CcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          133 LKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       133 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++++|.++...|..+..+++|+++++++|++++..|..+..+.+|.. ..+.+|.++ .+|+.+..++.+
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~-L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT-LLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE-EECCSSCCC-CCCTTTTTTCCC
T ss_pred             cccccccccccceeccccccccccchhcccccccccccCccccccccccce-eecccCCCc-ccChhHCCCCCC
Confidence            556666666666555555667788888888888888766667777888775 778888887 677666555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.3e-11  Score=86.30  Aligned_cols=84  Identities=27%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcc-hhhhc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSI-FSSLG  152 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~i-P~~l~  152 (209)
                      .+++.|++++|.+++++      +.+..+++|+.|++++|.+++ +|.     +..+++|++|++++|+++... +..++
T Consensus        20 ~~L~~L~ls~N~l~~lp------~~~~~l~~L~~L~l~~N~i~~-l~~-----~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALP------PALAALRCLEVLQASDNALEN-VDG-----VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             TTCCEEECCSSCCCCCC------GGGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCCCEEECCCCccCcch------hhhhhhhcccccccccccccc-cCc-----cccccccCeEECCCCccCCCCCchhhc
Confidence            47899999999998653      347889999999999999984 553     899999999999999998532 25689


Q ss_pred             CCCCCCEEeccCCcccc
Q 028394          153 GLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       153 ~l~~L~~L~L~~N~l~G  169 (209)
                      .+++|++|++++|+++.
T Consensus        88 ~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GCTTCCEEECTTSGGGG
T ss_pred             CCCCCCEEECCCCcCCc
Confidence            99999999999999984

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.3e-10  Score=85.51  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=77.2

Q ss_pred             CccccceEEcC-----------CCCcEEEEEcCCCC-CCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcC
Q 028394           61 CCQWERVECND-----------TTGRVIKLDLRDTR-NWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLS  128 (209)
Q Consensus        61 ~C~W~gv~C~~-----------~~~~v~~L~L~~~~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  128 (209)
                      |+.+.+|+|..           ...++++|++++++ ++.+.     +..|.++++|+.|++++|+++..-|..    |.
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~   77 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FH   77 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GG
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-----chhhccccccCcceeeccccCCccccc----cc
Confidence            44577888864           12478899998764 77543     456888999999999999999655555    89


Q ss_pred             CCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394          129 RLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       129 ~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      .+++|++|+|++|+++ .+|.......+|++|+|++|.+.
T Consensus        78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999999999 56655444557999999999985

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-10  Score=84.46  Aligned_cols=96  Identities=19%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcch--hhh
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIF--SSL  151 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP--~~l  151 (209)
                      .+++.|+|++|.+.++.       .+..+++|++|++++|.++. +|+.   .+..+++|++|++++|+++. ++  ..+
T Consensus        41 ~~L~~L~Ls~N~i~~l~-------~~~~l~~L~~L~ls~N~i~~-l~~~---~~~~l~~L~~L~L~~N~i~~-~~~l~~l  108 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKLD-------GFPLLRRLKTLLVNNNRICR-IGEG---LDQALPDLTELILTNNSLVE-LGDLDPL  108 (162)
T ss_dssp             TCCSEEECCSSCCCEEC-------CCCCCSSCCEEECCSSCCCE-ECSC---HHHHCTTCCEEECCSCCCCC-GGGGGGG
T ss_pred             ccCCEEECCCCCCCccC-------CcccCcchhhhhcccccccC-CCcc---ccccccccccceeccccccc-ccccccc
Confidence            57999999999998653       26789999999999999985 5544   14679999999999999984 44  368


Q ss_pred             cCCCCCCEEeccCCccccccCC----CCcccCCCC
Q 028394          152 GGLSSLRNLSLIGNRLIGSIDI----KGKYASTLF  182 (209)
Q Consensus       152 ~~l~~L~~L~L~~N~l~G~iP~----~~~~l~~l~  182 (209)
                      ..+++|++|++++|.++ .+|.    .+..+.+|.
T Consensus       109 ~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_         109 ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred             ccccccchhhcCCCccc-cccchHHHHHHHCCCcC
Confidence            89999999999999997 4453    245555554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=9.3e-10  Score=88.43  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=79.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      +++.|+++++.....     .+..+.+++.+++|++++|.+.+..|..    +.++++|++|+|++|+++ .+|+.+.++
T Consensus       172 ~L~~L~l~~n~~~~~-----~~~~~~~~~~l~~L~~s~n~l~~~~~~~----~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         172 SLTELHLDGNKITKV-----DAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             TCSEEECTTSCCCEE-----CTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccCEEECCCCcCCCC-----ChhHhhcccccccccccccccccccccc----ccccccceeeeccccccc-ccccccccc
Confidence            345555555544322     2345777889999999999998766666    888999999999999998 678889999


Q ss_pred             CCCCEEeccCCccccccCCCCc-------ccCCCCCCCccCCCCCc-hhhH
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGK-------YASTLFPCPIFCGSYFT-EQLE  197 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~-------~l~~l~~~~~~~~n~~~-~~~p  197 (209)
                      ++|++|+|++|+++ .|+....       .+.++. ...+.+|.++ .+++
T Consensus       242 ~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~-~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         242 KYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYS-GVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             SSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCS-EEECCSSSSCGGGSC
T ss_pred             cCCCEEECCCCccC-ccChhhccCcchhcccCCCC-EEECCCCcCccCcCC
Confidence            99999999999998 5665332       233343 3567788775 3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=1e-09  Score=88.15  Aligned_cols=105  Identities=23%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.++++++.+..+..        ..+++|+.|++++|..++..+..    +.+++.+++|++++|++++..|..+.++
T Consensus       151 ~L~~l~l~~n~l~~l~~--------~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         151 KLSYIRIADTNITTIPQ--------GLPPSLTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             TCCEEECCSSCCCSCCS--------SCCTTCSEEECTTSCCCEECTGG----GTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccCccccccCCccccCc--------ccCCccCEEECCCCcCCCCChhH----hhcccccccccccccccccccccccccc
Confidence            56677777777654321        12578999999999999888777    8999999999999999998888899999


Q ss_pred             CCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          155 SSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       155 ~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      ++|++|+|++|+|+ .||..+..+.+|.. ..+.+|+++
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~-L~Ls~N~i~  255 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQV-VYLHNNNIS  255 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCE-EECCSSCCC
T ss_pred             ccceeeeccccccc-ccccccccccCCCE-EECCCCccC
Confidence            99999999999998 78999999998875 777777766

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=2.3e-09  Score=81.38  Aligned_cols=103  Identities=20%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.++.+.+       +..+++|++|++++|.+. .+|.     +.+++.|++|++++|.+...  +.+..
T Consensus        62 ~nL~~L~Ls~N~l~~~~~-------l~~l~~L~~L~l~~n~~~-~~~~-----l~~l~~L~~L~l~~~~~~~~--~~~~~  126 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIA-DITP-----LANLTNLTGLTLFNNQITDI--DPLKN  126 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCC-CCGG-----GTTCTTCSEEECCSSCCCCC--GGGTT
T ss_pred             CCcCcCccccccccCccc-------ccCCcccccccccccccc-cccc-----cccccccccccccccccccc--cccch
Confidence            466777777777664322       566777777777777765 3442     67788888888888877643  23677


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCch
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +++|+.|++++|++.. +| .+..+.++.. ..+.+|.+++
T Consensus       127 l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~-L~l~~n~l~~  164 (199)
T d2omxa2         127 LTNLNRLELSSNTISD-IS-ALSGLTSLQQ-LNFSSNQVTD  164 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCSE-EECCSSCCCC
T ss_pred             hhhhHHhhhhhhhhcc-cc-cccccccccc-cccccccccC
Confidence            8888888888888863 44 4566666654 6666777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=1e-09  Score=84.81  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=84.8

Q ss_pred             CCcEEEEEcCCCCCCcccccc---------c------CCccccCCCCCCEEEccCceeccccCCCc--------------
Q 028394           73 TGRVIKLDLRDTRNWESAEWY---------M------NASLFTPFQQLESLYLIGNNIAGCVENEG--------------  123 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~---------~------~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~--------------  123 (209)
                      -.+++.|++++|.+..+.++.         +      .-+.+..+++|+.++++.+...+..+-..              
T Consensus        62 l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhh
Confidence            357999999999876443310         0      01225567777777777776654322110              


Q ss_pred             --chhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHH
Q 028394          124 --LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIR  201 (209)
Q Consensus       124 --~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~  201 (209)
                        ...+.++++|++|++++|.+++..+  ++++++|++|++++|++++ +|. +.++.+|.. ..+++|++++ ++. ++
T Consensus       142 ~~~~~~~~~~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~-L~Ls~N~lt~-i~~-l~  214 (227)
T d1h6ua2         142 TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPNLIE-VHLKNNQISD-VSP-LA  214 (227)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCE-EECTTSCCCB-CGG-GT
T ss_pred             chhhhhccccccccccccccccccchh--hcccccceecccCCCccCC-Chh-hcCCCCCCE-EECcCCcCCC-Ccc-cc
Confidence              1235667889999999998875433  7889999999999999985 554 778888775 7788888875 332 44


Q ss_pred             HHHhh
Q 028394          202 DLARF  206 (209)
Q Consensus       202 ~L~~~  206 (209)
                      .++++
T Consensus       215 ~l~~L  219 (227)
T d1h6ua2         215 NTSNL  219 (227)
T ss_dssp             TCTTC
T ss_pred             cCCCC
Confidence            55544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=1.6e-09  Score=88.86  Aligned_cols=99  Identities=20%  Similarity=0.222  Sum_probs=58.1

Q ss_pred             CcEEEEEcCCCCCCcccccc---------c------CCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec
Q 028394           74 GRVIKLDLRDTRNWESAEWY---------M------NASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL  138 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~---------~------~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L  138 (209)
                      .+++.++++++.+..+.++.         .      ....+..+++++.|++++|++++. ++     +..+++|++|++
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~-----l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SP-----VSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-GG-----GGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-cc-----cccCCCCCEEEC
Confidence            46788888888776443310         0      011234456666666666666643 21     556666777777


Q ss_pred             ccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCC
Q 028394          139 DYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLF  182 (209)
Q Consensus       139 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~  182 (209)
                      ++|++++ +| .++++++|++|++++|++++-+|  +.++++|.
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~  376 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT  376 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence            7776663 33 46666777777777777665443  45555554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=1.2e-09  Score=89.79  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             CcEEEEEcCCCCCCcccccc---------cC------CccccCCCCCCEEEccCceeccccCCCc---------------
Q 028394           74 GRVIKLDLRDTRNWESAEWY---------MN------ASLFTPFQQLESLYLIGNNIAGCVENEG---------------  123 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~---------~~------~~~~~~l~~L~~L~Ls~N~l~g~ip~~~---------------  123 (209)
                      .+++.++++++.++.++.+.         +.      ...+..+++|+.|++++|.+++..+-..               
T Consensus       219 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~  298 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE  298 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS
T ss_pred             CCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccc
Confidence            35667777777665443210         00      0125566778888888887765322110               


Q ss_pred             -chhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHH
Q 028394          124 -LDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRD  202 (209)
Q Consensus       124 -~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~  202 (209)
                       ...+..++++++|++++|++++..|  +..+++|++|++++|++++ +| .++++.+|.. ..+.+|.+++-.|  +..
T Consensus       299 ~~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~-L~l~~N~l~~l~~--l~~  371 (384)
T d2omza2         299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINW-LSAGHNQISDLTP--LAN  371 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCE-EECCSSCCCBCGG--GTT
T ss_pred             cccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCE-EECCCCcCCCChh--hcc
Confidence             2235667889999999999986533  7899999999999999985 55 5888888885 8888999987655  555


Q ss_pred             HHhh
Q 028394          203 LARF  206 (209)
Q Consensus       203 L~~~  206 (209)
                      |+++
T Consensus       372 l~~L  375 (384)
T d2omza2         372 LTRI  375 (384)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            5544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=2.2e-09  Score=82.19  Aligned_cols=118  Identities=22%  Similarity=0.273  Sum_probs=67.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCc-----------------chhcCCCCCCcEE
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEG-----------------LDTLSRLNNLKFL  136 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~-----------------~~~~~~l~~L~~L  136 (209)
                      .+++.|++++|.++.+.+       +..+++|++|++++|++++ +|.-.                 ...+..++.++.+
T Consensus        68 ~~L~~L~L~~n~i~~l~~-------~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l  139 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDIKP-------LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  139 (210)
T ss_dssp             TTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             CCCCEEeCCCccccCccc-------cccCccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            367778888877765432       4456667777777776663 33200                 0113344444444


Q ss_pred             ecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          137 YLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       137 ~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      ++++|.+++  +..+..+++|+++++++|++++ ++. +.++++|.. ..+.+|.++. +|. +..|+++
T Consensus       140 ~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~-L~Ls~N~i~~-l~~-l~~l~~L  202 (210)
T d1h6ta2         140 YLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQN-LYLSKNHISD-LRA-LAGLKNL  202 (210)
T ss_dssp             ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCE-EECCSSCCCB-CGG-GTTCTTC
T ss_pred             ccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCE-EECCCCCCCC-Chh-hcCCCCC
Confidence            444455442  2235567788888888888875 443 666777764 6677777763 442 4444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=5.2e-12  Score=96.77  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|+|++|.++.+.       .+..+++|+.|++++|.++ .+|..    ...+++|++|++++|+++. ++ .+..
T Consensus        48 ~~L~~L~Ls~n~I~~i~-------~l~~l~~L~~L~Ls~N~i~-~i~~~----~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          48 KACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             TTCCEEECSEEEESCCC-------CHHHHTTCCEEECCEEEEC-SCSSH----HHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             cccceeECcccCCCCcc-------cccCCccccChhhcccccc-ccccc----ccccccccccccccccccc-cc-cccc
Confidence            47889999999887542       2667899999999999997 56654    4556678899999998884 44 4778


Q ss_pred             CCCCCEEeccCCccccccC--CCCcccCCCCCCCccCCCCCchhh
Q 028394          154 LSSLRNLSLIGNRLIGSID--IKGKYASTLFPCPIFCGSYFTEQL  196 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP--~~~~~l~~l~~~~~~~~n~~~~~~  196 (209)
                      +++|++|++++|+++. ++  ..+..+.+|.. ..+.+|.+....
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~-L~L~~N~l~~~~  156 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLED-LLLAGNPLYNDY  156 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSE-EEECSSHHHHHH
T ss_pred             cccccccccccchhcc-ccccccccCCCccce-eecCCCccccCc
Confidence            8889999999998873 33  34566777664 667777766443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=2.5e-09  Score=81.11  Aligned_cols=113  Identities=20%  Similarity=0.318  Sum_probs=85.2

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcC
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGG  153 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~  153 (209)
                      .+++.|++++|.+..+.       .+..++.|+.|++++|.+... + .    +..+++|+.|++++|++. .+| .+..
T Consensus        84 ~~L~~L~l~~n~~~~~~-------~l~~l~~L~~L~l~~~~~~~~-~-~----~~~l~~L~~L~l~~n~l~-~~~-~l~~  148 (199)
T d2omxa2          84 TKLVDILMNNNQIADIT-------PLANLTNLTGLTLFNNQITDI-D-P----LKNLTNLNRLELSSNTIS-DIS-ALSG  148 (199)
T ss_dssp             TTCCEEECCSSCCCCCG-------GGTTCTTCSEEECCSSCCCCC-G-G----GTTCTTCSEEECCSSCCC-CCG-GGTT
T ss_pred             ccccccccccccccccc-------ccccccccccccccccccccc-c-c----cchhhhhHHhhhhhhhhc-ccc-cccc
Confidence            46888999988876543       266789999999999888753 2 2    788899999999999987 344 4788


Q ss_pred             CCCCCEEeccCCccccccCCCCcccCCCCCCCccCCCCCchhhHHHHHHHHhh
Q 028394          154 LSSLRNLSLIGNRLIGSIDIKGKYASTLFPCPIFCGSYFTEQLEVLIRDLARF  206 (209)
Q Consensus       154 l~~L~~L~L~~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~~~~p~~~~~L~~~  206 (209)
                      +++|++|++++|++++ +| .++++++|.. ..+++|.++. ++ .+..|+++
T Consensus       149 ~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~-L~ls~N~i~~-i~-~l~~L~~L  196 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTD-LK-PLANLTTLER-LDISSNKVSD-IS-VLAKLTNL  196 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CG-GGTTCTTCCE-EECCSSCCCC-CG-GGGGCTTC
T ss_pred             cccccccccccccccC-Cc-cccCCCCCCE-EECCCCCCCC-Cc-cccCCCCC
Confidence            9999999999999985 44 3677888775 7788888775 33 24455544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=6.2e-09  Score=79.58  Aligned_cols=79  Identities=25%  Similarity=0.385  Sum_probs=66.5

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCC
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGL  154 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l  154 (209)
                      .++.|+++++.+..+.       .+..+++|++|++++|.+++ +++     ++.+++|++|++++|++++ +| .+.++
T Consensus        47 ~L~~L~l~~~~i~~l~-------~l~~l~~L~~L~L~~n~i~~-l~~-----~~~l~~L~~L~l~~n~i~~-l~-~l~~l  111 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKD-LS-SLKDL  111 (210)
T ss_dssp             TCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-GG-GGTTC
T ss_pred             CccEEECcCCCCCCch-------hHhhCCCCCEEeCCCccccC-ccc-----cccCccccccccccccccc-cc-ccccc
Confidence            6889999999887543       26679999999999999986 443     7899999999999999984 56 48889


Q ss_pred             CCCCEEeccCCccc
Q 028394          155 SSLRNLSLIGNRLI  168 (209)
Q Consensus       155 ~~L~~L~L~~N~l~  168 (209)
                      ++|+.|++++|.+.
T Consensus       112 ~~L~~L~l~~~~~~  125 (210)
T d1h6ta2         112 KKLKSLSLEHNGIS  125 (210)
T ss_dssp             TTCCEEECTTSCCC
T ss_pred             cccccccccccccc
Confidence            99999999998876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.1e-08  Score=79.23  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=80.4

Q ss_pred             ccccceEEcCC---------CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCC
Q 028394           62 CQWERVECNDT---------TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNN  132 (209)
Q Consensus        62 C~W~gv~C~~~---------~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~  132 (209)
                      |....|.|...         ...++.|++++|.++.+.     ...|.++++|++|++++|.+...+|..   .+..++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~-----~~~f~~l~~L~~L~ls~n~~~~~i~~~---~f~~l~~   79 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK   79 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEEC-----TTTTTTCTTCCEEEEESCTTCCEECSS---SEESCTT
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccC-----hhHhhccchhhhhhhccccccceeecc---ccccccc
Confidence            66778889631         136889999999987554     345788999999999999988777664   3778889


Q ss_pred             CcEEeccc-CCCCCcchhhhcCCCCCCEEeccCCcccc
Q 028394          133 LKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGNRLIG  169 (209)
Q Consensus       133 L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~L~~N~l~G  169 (209)
                      ++++++.. |++....|..|.++++|+++++++|.+..
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccccccccccccccchhhhcc
Confidence            99998764 77887777888999999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=3.8e-08  Score=75.67  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             ccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCccc
Q 028394           99 FTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYA  178 (209)
Q Consensus        99 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l  178 (209)
                      +...++|+.|++++|.+.+..+      ++++++|++|++++|++++ +|+ ++++++|++|+|++|++++ +|. +.++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~~------l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~-l~~l  216 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSP-LANT  216 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGG-GTTC
T ss_pred             hccccccccccccccccccchh------hcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Ccc-cccC
Confidence            5667889999999999874322      8899999999999999985 554 8899999999999999995 553 6666


Q ss_pred             CCCCC
Q 028394          179 STLFP  183 (209)
Q Consensus       179 ~~l~~  183 (209)
                      .+|..
T Consensus       217 ~~L~~  221 (227)
T d1h6ua2         217 SNLFI  221 (227)
T ss_dssp             TTCCE
T ss_pred             CCCCE
Confidence            66653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.58  E-value=2.9e-10  Score=86.77  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=76.3

Q ss_pred             cccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcc
Q 028394           98 LFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKY  177 (209)
Q Consensus        98 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~  177 (209)
                      .+..+++|++|+|++|+++ .++ .    +..+++|++|++++|+++ .+|.....+++|++|++++|+++. ++ .+.+
T Consensus        43 sl~~L~~L~~L~Ls~n~I~-~i~-~----l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIE-KIS-S----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSEEEES-CCC-C----HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             HHhcccccceeECcccCCC-Ccc-c----ccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            4677999999999999998 565 3    889999999999999998 677766667789999999999984 54 3667


Q ss_pred             cCCCCCCCccCCCCCchhh-HHHHHHHHhh
Q 028394          178 ASTLFPCPIFCGSYFTEQL-EVLIRDLARF  206 (209)
Q Consensus       178 l~~l~~~~~~~~n~~~~~~-p~~~~~L~~~  206 (209)
                      +.+|.. ..+.+|.++.-- ...+..++++
T Consensus       114 l~~L~~-L~L~~N~i~~~~~~~~l~~l~~L  142 (198)
T d1m9la_         114 LVNLRV-LYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             HHHSSE-EEESEEECCCHHHHHHHTTTTTC
T ss_pred             cccccc-cccccchhccccccccccCCCcc
Confidence            777774 777888877421 1334444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.51  E-value=1.1e-07  Score=76.42  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=18.9

Q ss_pred             CCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccc
Q 028394          132 NLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       132 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~  168 (209)
                      .|++|++++|+++ .+|. ++.+++|++|++++|.++
T Consensus        99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            3555555555555 3443 345555555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.6e-07  Score=70.32  Aligned_cols=103  Identities=11%  Similarity=0.098  Sum_probs=78.3

Q ss_pred             EEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh-hhcCCCC
Q 028394           78 KLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS-SLGGLSS  156 (209)
Q Consensus        78 ~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~  156 (209)
                      .++.++.++++++.     . +  .+++++|++++|.++ .+|..   .|.++++|++|++++|.+...+|. .|.++++
T Consensus        12 ~i~c~~~~l~~iP~-----~-l--~~~l~~L~Ls~n~i~-~l~~~---~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~   79 (242)
T d1xwdc1          12 VFLCQESKVTEIPS-----D-L--PRNAIELRFVLTKLR-VIQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   79 (242)
T ss_dssp             EEEEESCSCSSCCS-----C-S--CSCCSEEEEESCCCC-EECTT---TTTTCTTCCEEEEESCTTCCEECSSSEESCTT
T ss_pred             EEEEeCCCCCCcCC-----C-C--CCCCCEEECcCCcCC-ccChh---Hhhccchhhhhhhccccccceeeccccccccc
Confidence            56667777765532     2 2  247899999999998 46553   288999999999999999876654 6889999


Q ss_pred             CCEEecc-CCccccccCCCCcccCCCCCCCccCCCCCc
Q 028394          157 LRNLSLI-GNRLIGSIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       157 L~~L~L~-~N~l~G~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      ++++++. .|++....|..+..+.+|.. ..+.+|.+.
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~-l~l~~~~l~  116 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQY-LLISNTGIK  116 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCE-EEEESCCCC
T ss_pred             cccccccccccccccccccccccccccc-cccchhhhc
Confidence            9999976 57888777777888888775 666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.9e-08  Score=80.09  Aligned_cols=111  Identities=18%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceecc----ccCCCcchhcCCCCCCcEEecccCCCCCc----
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAG----CVENEGLDTLSRLNNLKFLYLDYNHFNNS----  146 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g----~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----  146 (209)
                      +++.||+++++++..+-    ...+..+++++.|+|++|.++-    .+...    +..+++|++|||++|+++..    
T Consensus         3 ~l~~ld~~~~~i~~~~~----~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~----L~~~~~L~~LdLs~N~i~~~~~~~   74 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSA----LRVNPALAELNLRSNELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEESCCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHH----HHTCTTCCEEECTTCCCHHHHHHH
T ss_pred             CCCEEEeeCCcCChHHH----HHHHHhCCCCCEEEeCCCCCCHHHHHHHHHH----HhcCCCCCEEECcCCcCChHHHHH
Confidence            46777777777653211    1123345566666666665541    12222    45556666666666665421    


Q ss_pred             chhhhc-CCCCCCEEeccCCccccc----cCCCCcccCCCCCCCccCCCCCch
Q 028394          147 IFSSLG-GLSSLRNLSLIGNRLIGS----IDIKGKYASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       147 iP~~l~-~l~~L~~L~L~~N~l~G~----iP~~~~~l~~l~~~~~~~~n~~~~  194 (209)
                      +...+. ...+|++|+|++|+++..    ++..+....+|.. ..+.+|.++.
T Consensus        75 l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~-L~L~~N~i~~  126 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE-LHLSDNLLGD  126 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE-EECCSSBCHH
T ss_pred             HHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccc-cccccccchh
Confidence            111121 123566666666666532    3333444444443 4455555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.27  E-value=7.7e-07  Score=71.27  Aligned_cols=67  Identities=19%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccCCCCcccCCC
Q 028394          102 FQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSIDIKGKYASTL  181 (209)
Q Consensus       102 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~~l~~l  181 (209)
                      +++|++|++++|+++ .+|..       +++|+.|+|++|+++ .+|..   +++|++|++++|+++ .+|.....+..|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~-------~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL-------PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC-------CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccccc-------cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCee
Confidence            568889999998887 57753       467888899999887 67753   467888999999887 677655444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3e-07  Score=76.11  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             cEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccc----cCCCcchhcC-CCCCCcEEecccCCCCC----
Q 028394           75 RVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGC----VENEGLDTLS-RLNNLKFLYLDYNHFNN----  145 (209)
Q Consensus        75 ~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~-~l~~L~~L~Ls~N~l~g----  145 (209)
                      .++.++++++.+...+...+ ...+...++|++|+|++|.++..    ++..    +. ..+.|++|+|++|+++.    
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~----l~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHF-SSVLAQNRFLLELQISNNRLEDAGVRELCQG----LGQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHH-HHHHHHCSSCCEEECCSSBCHHHHHHHHHHH----HTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccccccccccchhhhhhhhc-ccccccccchhhhheeeecccCcccchhhhh----hhcccCCCCEEECCCCCCChHHHH
Confidence            45556666555432111000 01133456899999999998643    2222    43 46779999999999985    


Q ss_pred             cchhhhcCCCCCCEEeccCCccccccCCCCc-----ccCCCCCCCccCCCCCchhhHHHHHHHHh
Q 028394          146 SIFSSLGGLSSLRNLSLIGNRLIGSIDIKGK-----YASTLFPCPIFCGSYFTEQLEVLIRDLAR  205 (209)
Q Consensus       146 ~iP~~l~~l~~L~~L~L~~N~l~G~iP~~~~-----~l~~l~~~~~~~~n~~~~~~p~~~~~L~~  205 (209)
                      .+++.+..+++|++|+|++|+++......+.     +.+.|. ...+.++.++.+....+..++.
T Consensus       388 ~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~-~l~l~~~~~~~~~~~~l~~l~~  451 (460)
T d1z7xw1         388 SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE-QLVLYDIYWSEEMEDRLQALEK  451 (460)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCC-EEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccC-EEECCCCCCCHHHHHHHHHHHH
Confidence            3556677889999999999999864433332     122343 3677889999888888877664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.5e-07  Score=66.31  Aligned_cols=69  Identities=25%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             cCCCCCCEEEccCceeccc--cCCCcchhcCCCCCCcEEecccCCCCCcchhhhcCCCCCCEEeccCCccccccC
Q 028394          100 TPFQQLESLYLIGNNIAGC--VENEGLDTLSRLNNLKFLYLDYNHFNNSIFSSLGGLSSLRNLSLIGNRLIGSID  172 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~G~iP  172 (209)
                      ..+++|++|+|++|+++..  ++..    +..+++|+.|+|++|+++..-+-......+|+.|++++|.++....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~----~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTH----HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHH----HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            3467788888888877642  2222    5567778888888888774322233344567778888887776544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.3e-07  Score=67.94  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh----
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----  149 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~----  149 (209)
                      ..++.|+|++|.++.+..+   ...+..+++|+.|+|++|.++ .+++-   .......|+.|++++|.++.....    
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~---~~~~~~l~~L~~L~Ls~N~i~-~l~~l---~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELK-SEREL---DKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGG---GTHHHHSTTCCCCCCTTSCCC-CGGGH---HHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             CCCCEeeCCCccccCCchh---HHHHhhCCcccccccccCccc-cchhh---hhhhccccceeecCCCCcCcCcccchhH
Confidence            4789999999999866542   234567899999999999998 44431   133445799999999999876542    


Q ss_pred             ---hhcCCCCCCEEeccCCcc
Q 028394          150 ---SLGGLSSLRNLSLIGNRL  167 (209)
Q Consensus       150 ---~l~~l~~L~~L~L~~N~l  167 (209)
                         .+..+++|+.||  ++.+
T Consensus       138 ~~~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         138 ISAIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHHHTTSTTCCEET--TEEC
T ss_pred             HHHHHHHCCCCCEEC--cCCC
Confidence               356789999886  4444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.93  E-value=1.3e-06  Score=70.69  Aligned_cols=120  Identities=15%  Similarity=0.007  Sum_probs=71.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCcchh----
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNSIFS----  149 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~iP~----  149 (209)
                      ..++.|+++.+.+..-+...+-...+...++|+.|++++|.++..-.......+..+++|++|+|++|.+++.-..    
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            3577788888776532211111223556788888999888875321111011267788888999999988764333    


Q ss_pred             hhcC--CCCCCEEeccCCcccccc----CCCCc-ccCCCCCCCccCCCCCch
Q 028394          150 SLGG--LSSLRNLSLIGNRLIGSI----DIKGK-YASTLFPCPIFCGSYFTE  194 (209)
Q Consensus       150 ~l~~--l~~L~~L~L~~N~l~G~i----P~~~~-~l~~l~~~~~~~~n~~~~  194 (209)
                      .+..  .+.|++|++++|+++..-    ...+. +..++.. ..+++|.|..
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~-L~l~~N~~~~  316 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF-LELNGNRFSE  316 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE-EECTTSBSCT
T ss_pred             HhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE-EECCCCcCCC
Confidence            3333  356889999998886532    22221 3445553 6678888864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.64  E-value=1.2e-05  Score=64.81  Aligned_cols=91  Identities=19%  Similarity=0.098  Sum_probs=65.4

Q ss_pred             cCCCCCCEEEccCceeccc-----cCCCcchhcCCCCCCcEEecccCCCCCc----chhhhcCCCCCCEEeccCCccccc
Q 028394          100 TPFQQLESLYLIGNNIAGC-----VENEGLDTLSRLNNLKFLYLDYNHFNNS----IFSSLGGLSSLRNLSLIGNRLIGS  170 (209)
Q Consensus       100 ~~l~~L~~L~Ls~N~l~g~-----ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~G~  170 (209)
                      ...+.|+.|++++|.++..     +...    +..+++|++|++++|.++..    +...+..+++|++|+|++|.+++.
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~----l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEG----LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTT----GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhhhhcccccccccccccccccchhhh----hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            4467899999999988632     2333    67788999999999998643    455677899999999999999765


Q ss_pred             cCCCCc----cc--CCCCCCCccCCCCCchh
Q 028394          171 IDIKGK----YA--STLFPCPIFCGSYFTEQ  195 (209)
Q Consensus       171 iP~~~~----~l--~~l~~~~~~~~n~~~~~  195 (209)
                      -...++    ..  ..+. ...+++|.++.+
T Consensus       259 g~~~l~~~l~~~~~~~L~-~L~ls~N~i~~~  288 (344)
T d2ca6a1         259 GAAAVVDAFSKLENIGLQ-TLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHHHHHHTCSSCCCC-EEECCSSCCBHH
T ss_pred             hhHHHHHHhhhccCCCCC-EEECCCCcCChH
Confidence            333332    11  2344 378888988854

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.2e-05  Score=63.49  Aligned_cols=55  Identities=27%  Similarity=0.211  Sum_probs=29.0

Q ss_pred             CCCCCCcEEecccC-CCCCcchhhhcCCCCCCEEeccC-CccccccCCCCcccCCCC
Q 028394          128 SRLNNLKFLYLDYN-HFNNSIFSSLGGLSSLRNLSLIG-NRLIGSIDIKGKYASTLF  182 (209)
Q Consensus       128 ~~l~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~L~~-N~l~G~iP~~~~~l~~l~  182 (209)
                      ..+++|++|++++| .+++..+..++++++|++|++++ +.++......++++.+|.
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            34555666666553 35555555555556666666655 345544444444544444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=7.8e-05  Score=58.65  Aligned_cols=61  Identities=23%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             CCCCCCEEEccCc-eeccccCCCcchhcCCCCCCcEEeccc-CCCCCcchhhhcCCCCCCEEeccCC
Q 028394          101 PFQQLESLYLIGN-NIAGCVENEGLDTLSRLNNLKFLYLDY-NHFNNSIFSSLGGLSSLRNLSLIGN  165 (209)
Q Consensus       101 ~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~L~~N  165 (209)
                      .+++|++|+++++ .+++.....    +.++++|++|++++ +++++.....++++++|++|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~----l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhh----hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4677888888774 455555444    77778888888887 4677666666777788888887765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=5.6e-05  Score=54.96  Aligned_cols=95  Identities=11%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394           73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I  147 (209)
Q Consensus        73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i  147 (209)
                      ...+++|+|+++ .++.-+-..+ ...+...+.|+.|+|++|.+...-.......+...+.|++|+|++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l-~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHH-HHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            357899999874 3431110000 123555678999999999886432222111245568899999999999853    2


Q ss_pred             hhhhcCCCCCCEEeccCCccc
Q 028394          148 FSSLGGLSSLRNLSLIGNRLI  168 (209)
Q Consensus       148 P~~l~~l~~L~~L~L~~N~l~  168 (209)
                      -..+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234566788999999988654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.77  E-value=0.00024  Score=51.38  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=63.3

Q ss_pred             CCcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCC-------
Q 028394           73 TGRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNN-------  145 (209)
Q Consensus        73 ~~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g-------  145 (209)
                      ...++.|+|+++.+..-+...+ ...+...+.|+.|+|++|.++..--......+..-+.|++|++++|.+..       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~l-a~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGL-IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTH-HHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCccceeeccccccchhHHHHH-hhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            3579999999998753221111 12244567899999999998753211112236777889999999997653       


Q ss_pred             cchhhhcCCCCCCEEeccCCcc
Q 028394          146 SIFSSLGGLSSLRNLSLIGNRL  167 (209)
Q Consensus       146 ~iP~~l~~l~~L~~L~L~~N~l  167 (209)
                      .+...+..-++|+.|+++++..
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCCccEeeCcCCCc
Confidence            1445566678999999877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.94  E-value=0.0061  Score=43.35  Aligned_cols=119  Identities=16%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             CCcEEEEEcCCC-CCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEecccCCCCCc----c
Q 028394           73 TGRVIKLDLRDT-RNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYLDYNHFNNS----I  147 (209)
Q Consensus        73 ~~~v~~L~L~~~-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~Ls~N~l~g~----i  147 (209)
                      ...++.|+|++. .++.-+-..+ ...+...++|+.|++++|.++..--......+...+.++.+++++|.++..    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l-~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHH-HHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            467889999874 4531110000 122456789999999999886432211112255678899999999998753    3


Q ss_pred             hhhhcCCCCCCEEec--cCCcccc----ccCCCCcccCCCCCCCccCCCCCc
Q 028394          148 FSSLGGLSSLRNLSL--IGNRLIG----SIDIKGKYASTLFPCPIFCGSYFT  193 (209)
Q Consensus       148 P~~l~~l~~L~~L~L--~~N~l~G----~iP~~~~~l~~l~~~~~~~~n~~~  193 (209)
                      -..+...++|+.++|  ++|.+.-    .|-..+.....+.. +.+..+...
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~-L~l~~~~~~  145 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK-FGYHFTQQG  145 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE-EECCCSSHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCE-EeCcCCCCc
Confidence            345677788987666  4666743    23333344455543 444454443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.93  E-value=0.004  Score=44.34  Aligned_cols=93  Identities=19%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             CcEEEEEcCCCCCCcccccccCCccccCCCCCCEEEccCceeccccCCCcchhcCCCCCCcEEec--ccCCCCC----cc
Q 028394           74 GRVIKLDLRDTRNWESAEWYMNASLFTPFQQLESLYLIGNNIAGCVENEGLDTLSRLNNLKFLYL--DYNHFNN----SI  147 (209)
Q Consensus        74 ~~v~~L~L~~~~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~l~~L~~L~L--s~N~l~g----~i  147 (209)
                      .++++|+++++.++.-+-..+ ...+...+.++.+++++|.+...--......+...+.|+.++|  +.|.+..    .+
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L-~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHH-HHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            467777777776642211101 1123345677777777776643311111122555666765444  4555643    34


Q ss_pred             hhhhcCCCCCCEEeccCCcc
Q 028394          148 FSSLGGLSSLRNLSLIGNRL  167 (209)
Q Consensus       148 P~~l~~l~~L~~L~L~~N~l  167 (209)
                      ...+...+.|+.|+++.+..
T Consensus       125 a~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCCCcCEEeCcCCCC
Confidence            44455667777777766554