Citrus Sinensis ID: 028395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFCI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEEEEEccccccEEEccHHHHHHHHHHcccccEEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEEEEEEcccccccEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccHHHEEEEEccccccccEEcHHHHHHHcHHHHHHHHHcHEEEEEHHcccEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHccccEEEEcccccEEEccEEEEEEccccccEEEEEEEEccccccEEEEcc
Coil and Loop (DISEMBL)
mqlqlrssssASALFSAvqvkppssppvrvkalftknpgsgtlknsnsntnpnpnpmasnprwaqktvtlpplrrgchlitPKIVKEIAQDLSEFKCGLAHLFLLHTSasltinenydsdvrddTETFLNkivpegrsaswkhtlegpddmpahikssmfgctltipitdgqlnmgtWQVCrnglgfrnySLSCFLwsksnfhvnrfci
Flexible Loop (DISEMBL)
MQLQLRSSSSASALFSavqvkppssppvrVKALFTknpgsgtlknsnsntnpnpnpmasnprWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNkivpegrsaswkhtlEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCflwsksnfhvnrfci
Low Complexity Region (SEG)
MqlqlrssssasalfsavqvkppssppvrvkALFTKNPGSGTLKnsnsntnpnpnpmasnpRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFCI
Disordered region (IsUnstruct)
****************************************************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP*******************HIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFC*
Disordered Region (DISOPRED)
*************LFSAVQVKPPSSPPVRVK*********************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSN********
Disordered Region (DISEMBL)
**************************PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFCI
Disordered Region (DISPRO)
***********************************************************NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRNYSLSCFLWSKSNFHVNRFCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
O14155	142	UPF0047 protein C4A8.02c	yes	no	0.535	0.788	0.513	1e-27
P0AF48	138	UPF0047 protein YjbQ OS=E	N/A	no	0.545	0.826	0.495	3e-26
P0AF49	138	UPF0047 protein YjbQ OS=E	N/A	no	0.545	0.826	0.495	3e-26
P0A2L1	138	UPF0047 protein YjbQ OS=S	yes	no	0.545	0.826	0.504	2e-20
P0A2L2	138	UPF0047 protein YjbQ OS=S	N/A	no	0.545	0.826	0.504	2e-20
P74125	147	UPF0047 protein sll1880 O	N/A	no	0.564	0.802	0.414	4e-17
Q58481	138	UPF0047 protein MJ1081 OS	yes	no	0.440	0.666	0.455	4e-14
O05243	132	UPF0047 protein YugU OS=B	yes	no	0.430	0.681	0.34	7e-08
O28229	126	UPF0047 protein AF_2050 O	yes	no	0.387	0.642	0.344	3e-07
O26865	143	UPF0047 protein MTH_771 O	yes	no	0.497	0.727	0.290	3e-06

>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/115 (51%), Positives = 84/115 (73%), Gaps = 3/115 (2%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
               L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ
Sbjct: 64  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQ 116

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQ
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQ 115

Escherichia coli O157:H7 (taxid: 83334)

>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 79/117 (67%), Gaps = 3/117 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQ
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQ 115

Salmonella typhi (taxid: 90370)

>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 5/123 (4%)

Query: 58  ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
           A+  R  Q+ + +    +  H    KI + + Q  S  K GL  +F+ HTSASL I EN 
Sbjct: 5   AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62

Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +G
Sbjct: 63  DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120

Query: 177 TWQ 179
           TWQ
Sbjct: 121 TWQ 123

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 9/101 (8%)

Query: 80  ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
           ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+    
Sbjct: 23  ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76

Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQ
Sbjct: 77  NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQ 115

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 84  IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
           I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P      W
Sbjct: 18  ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71

Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           +H L+     +  AH+KSS  G +  + + +G+L +GTWQ
Sbjct: 72  EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQ 111

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 6/87 (6%)

Query: 94  EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT-LEGPDDMP 152
           E + GL  ++  HT+ +L INE  +  + +D   F+ K+VP G+   +KH  L+   D  
Sbjct: 25  ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79

Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           AH+K+++ G ++ +P+  G+L +GTWQ
Sbjct: 80  AHLKATLLGNSVVVPVESGKLALGTWQ 106

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 72  PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
           PLR  R   LI    +     + S  + G+ ++F  H+++++ INEN +S +  D E+ L
Sbjct: 15  PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73

Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              VP    AS+ H     ++  +H+++ + G + T+P+ +G +++GTWQ
Sbjct: 74  EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQ 120

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
225457713	236	PREDICTED: uncharacterized protein LOC10	0.822	0.728	0.661	8e-61
449527653	162	PREDICTED: UPF0047 protein C4A8.02c-like	0.741	0.956	0.730	1e-60
449455657	185	PREDICTED: UPF0047 protein C4A8.02c-like	0.741	0.837	0.730	3e-60
224065613	163	predicted protein [Populus trichocarpa]	0.669	0.858	0.756	7e-60
255539386	195	conserved hypothetical protein [Ricinus	0.789	0.846	0.698	8e-60
118481865	147	unknown [Populus trichocarpa]	0.578	0.823	0.900	2e-59
297845088	218	hypothetical protein ARALYDRAFT_472344 [	0.760	0.729	0.651	8e-59
297745635	148	unnamed protein product [Vitis vinifera]	0.569	0.804	0.899	9e-59
356521568	175	PREDICTED: UPF0047 protein yjbQ-like [Gl	0.569	0.68	0.890	7e-58
357475211	173	hypothetical protein MTR_4g084120 [Medic	0.588	0.710	0.845	2e-57

>gi|225457713|ref|XP_002277414.1| PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera]

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/180 (66%), Positives = 136/180 (75%), Gaps = 8/180 (4%)

Query: 1   MQLQLRSSSSASALFSAVQVKPP-SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMAS 59
           +  + +      A   ++  KPP +S  +RVK+L+T         + N  T+        
Sbjct: 41  ITYKFKEEVPMQASLLSLGAKPPLTSHQIRVKSLYTPT-------SFNDPTDSTSMAAIP 93

Query: 60  NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDS
Sbjct: 94  APKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDS 153

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           DVRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQ
Sbjct: 154 DVRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQ 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527653|ref|XP_004170824.1| PREDICTED: UPF0047 protein C4A8.02c-like, partial [Cucumis sativus]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 132/156 (84%), Gaps = 1/156 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQ
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQ 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455657|ref|XP_004145568.1| PREDICTED: UPF0047 protein C4A8.02c-like isoform 1 [Cucumis sativus]

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 132/156 (84%), Gaps = 1/156 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQ
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQ 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065613|ref|XP_002301884.1| predicted protein [Populus trichocarpa] gi|222843610|gb|EEE81157.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (600), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 126/152 (82%), Gaps = 12/152 (7%)

Query: 28  VRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKE 87
           +RV +L+T  P   +  +S +          S P+WAQKT+TLPP RRGCHLITPKI+ E
Sbjct: 1   LRVSSLYTAKP---SFSDSMAT---------SAPKWAQKTITLPPHRRGCHLITPKILNE 48

Query: 88  IAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEG 147
           I  DLSEFKCGLAHLFL HTSASLTINENYDSDVRDDTETFLNKIVPEGRSA WKHTLEG
Sbjct: 49  IGSDLSEFKCGLAHLFLHHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEG 108

Query: 148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           PDDMPAHIKSSMFGC+LTIPITDG+LNMGTWQ
Sbjct: 109 PDDMPAHIKSSMFGCSLTIPITDGKLNMGTWQ 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539386|ref|XP_002510758.1| conserved hypothetical protein [Ricinus communis] gi|223551459|gb|EEF52945.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 134/176 (76%), Gaps = 11/176 (6%)

Query: 9   SSASALFSAVQVKP----PSSPPV-RVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRW 63
           +SA   FS+   KP     S+ PV RV +L+T  P S T      N + N     S  +W
Sbjct: 3   ASAHLWFSSSAPKPVWLSASAAPVPRVNSLYTAKPSSLT------NDSNNSMATTSTSKW 56

Query: 64  AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
           AQKTVTL P RRGCHLIT KI+ EI  DLSEFKCGLAHLF+ HTSASLTINENYDSDVRD
Sbjct: 57  AQKTVTLSPHRRGCHLITSKILNEIGSDLSEFKCGLAHLFIQHTSASLTINENYDSDVRD 116

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           DTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC LTIPIT+G+LNMGTWQ
Sbjct: 117 DTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCQLTIPITNGKLNMGTWQ 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481865|gb|ABK92869.1| unknown [Populus trichocarpa]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/121 (90%), Positives = 114/121 (94%)

Query: 59  SNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           S P+WAQKT+TLPP RRGCHLITPKI+ EI  DLSEFKCGLAHLFL HTSASLTINENYD
Sbjct: 4   SAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINENYD 63

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
           SDVRDDTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDG+LNMGTW
Sbjct: 64  SDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGKLNMGTW 123

Query: 179 Q 179
           Q
Sbjct: 124 Q 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845088|ref|XP_002890425.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata] gi|297336267|gb|EFH66684.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/175 (65%), Positives = 134/175 (76%), Gaps = 16/175 (9%)

Query: 5   LRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWA 64
           L++  S++ LFS V        P+RV+++ T          +N  T+      +S P+WA
Sbjct: 37  LKAMQSSTILFSGVV-------PLRVRSVLTP---------ANPATDRASMASSSGPKWA 80

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           QKT+TLPPLRRGCHLITPKIVKEI QDLS+F CGLAH+FL HTSASLTINENYD DV+ D
Sbjct: 81  QKTITLPPLRRGCHLITPKIVKEIGQDLSDFNCGLAHVFLQHTSASLTINENYDPDVQAD 140

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           TETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+LNMGTWQ
Sbjct: 141 TETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLNMGTWQ 195

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745635|emb|CBI40800.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/119 (89%), Positives = 113/119 (94%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSD
Sbjct: 7   PKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSD 66

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           VRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQ
Sbjct: 67  VRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQ 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521568|ref|XP_003529426.1| PREDICTED: UPF0047 protein yjbQ-like [Glycine max]

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 106/119 (89%), Positives = 113/119 (94%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKTV+LPPLRRGCHL+T KIVKEI QDLS FKCGLAHLFL HTSASLTINENYDSD
Sbjct: 34  PKWAQKTVSLPPLRRGCHLVTSKIVKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDSD 93

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           VR+DTETFLN+IVPEG SA WKHTLEGPDDMPAHIKSSMFGCTLTIPIT+G+LNMGTWQ
Sbjct: 94  VREDTETFLNRIVPEGSSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITNGKLNMGTWQ 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475211|ref|XP_003607891.1| hypothetical protein MTR_4g084120 [Medicago truncatula] gi|85719357|gb|ABC75362.1| Protein of unknown function UPF0047 [Medicago truncatula] gi|355508946|gb|AES90088.1| hypothetical protein MTR_4g084120 [Medicago truncatula]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/123 (84%), Positives = 112/123 (91%)

Query: 57  MASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINEN 116
           MA+ P+WAQKT+ LPP +RGCHL+TPKI KEI QDLS FKCGLAHLFL HTSASLTINEN
Sbjct: 28  MATAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINEN 87

Query: 117 YDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           YD+DVRDDTETFLN+IVPEG SA WKHTLEG DDMPAHIKSSMFGC LTIPITDG+LNMG
Sbjct: 88  YDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITDGKLNMG 147

Query: 177 TWQ 179
           TWQ
Sbjct: 148 TWQ 150

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
TAIR|locus:505006137	217	AT1G21065 "AT1G21065" [Arabido	0.564	0.543	0.822	1e-52
FB|FBgn0263355	687	CG31688 [Drosophila melanogast	0.545	0.165	0.547	1.4e-31
UNIPROTKB|Q60BB8	139	MCA0559 "Putative uncharacteri	0.550	0.827	0.529	2.1e-29
UNIPROTKB|Q47W13	139	CPS_4360 "Putative uncharacter	0.550	0.827	0.504	7.1e-29
TIGR_CMR|CPS_4360	139	CPS_4360 "conserved hypothetic	0.550	0.827	0.504	7.1e-29
UNIPROTKB|G4MUS6	210	MGG_01675 "Uncharacterized pro	0.698	0.695	0.434	5e-28
UNIPROTKB|Q9KUY5	139	VC_0373 "Putative uncharacteri	0.550	0.827	0.529	5e-28
TIGR_CMR|VC_0373	139	VC_0373 "conserved hypothetica	0.550	0.827	0.529	5e-28
POMBASE|SPAC4A8.02c	142	SPAC4A8.02c "conserved protein	0.535	0.788	0.513	1.7e-27
ASPGD|ASPL0000014934	144	AN8050 [Emericella nidulans (t	0.555	0.805	0.466	7.3e-27

TAIR|locus:505006137 AT1G21065 "AT1G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 97/118 (82%), Positives = 109/118 (92%)

Query:    62 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDV 121
             +WAQKT+TLPPLRRGCHLITPKI+KEI +DLS+F CGLAH+FL HTSASLTINENYD DV
Sbjct:    77 KWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDV 136

Query:   122 RDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
             + DTETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+L+MGTWQ
Sbjct:   137 QADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQ 194

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0263355 CG31688 [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 1.4e-31, P = 1.4e-31
 Identities = 64/117 (54%), Positives = 88/117 (75%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q+ + L P  RG HL+T +I++++ + L+ F  GL H+ +LHTSASL +NE++D DVR
Sbjct:    37 WFQRKINLRPQHRGVHLVTEEILRQMPE-LAHFSVGLCHMQILHTSASLALNESWDPDVR 95

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
             DD E  LNKIVPEG    ++H+ EGPDDMPAH+K+   G +LTIPITDG+L++GTWQ
Sbjct:    96 DDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLSLGTWQ 150

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q60BB8 MCA0559 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 62/117 (52%), Positives = 84/117 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT+ L P  RG HL+T +I   + + L+ F+ G+AH F+ HTSASLTINEN D+DVR
Sbjct:     2 WFQKTIVLKPRSRGFHLVTAEITANLPE-LARFRQGIAHFFIQHTSASLTINENADADVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              D E +L   VPE R+  ++HTLEG DDMPAHIK+ + G ++T+P+  G+L +GTWQ
Sbjct:    61 SDLEAYLLAQVPE-RAPYYRHTLEGDDDMPAHIKAVLVGNSVTVPLRQGRLALGTWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47W13 CPS_4360 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 59/117 (50%), Positives = 84/117 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQ
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4360 CPS_4360 "conserved hypothetical protein TIGR00149" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 59/117 (50%), Positives = 84/117 (71%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQ
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MUS6 MGG_01675 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 66/152 (43%), Positives = 91/152 (59%)

Query:    32 ALFTKNPGSGTLKXXXXXXXXXXXXXXXXXRWAQKTVTLPPLRRGCHLITPKIVKEIAQD 91
             AL T N    T+                   W QK  TLP   RG +LIT  +VKEI + 
Sbjct:    36 ALLTGNLSRLTVSSSANRPSSYTSHPSAKMSWFQKQFTLPAKSRGSYLITDTVVKEIPE- 94

Query:    92 LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP----EGRSASWKHTLEG 147
             +  +K GL +LF+ HTS +L++NEN+D DVR+D    L++I P    +G S  + H+ EG
Sbjct:    95 IKNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAAGPKGESL-YLHSAEG 153

Query:   148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
             PDDMPAHIKS++ G ++TIPI++G+L  GTWQ
Sbjct:   154 PDDMPAHIKSALVGASVTIPISNGKLATGTWQ 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045132 "meiotic chromosome segregation" evidence=ISS

UNIPROTKB|Q9KUY5 VC_0373 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 62/117 (52%), Positives = 78/117 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQ
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0373 VC_0373 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 62/117 (52%), Positives = 78/117 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQ
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC4A8.02c SPAC4A8.02c "conserved protein, UPF0047 family" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 59/115 (51%), Positives = 84/115 (73%)

Query:    65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
             Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct:     5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query:   125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
                 L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ
Sbjct:    64 MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQ 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0045132 "meiotic chromosome segregation" evidence=IMP

ASPGD|ASPL0000014934 AN8050 [Emericella nidulans (taxid:162425)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 55/118 (46%), Positives = 83/118 (70%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT TLP   RG +LIT  I+  + + + E+K G+ +LF+ HTS +L++NEN+D DVR
Sbjct:     3 WTQKTFTLPSKSRGSYLITDHILSSLPE-IREYKVGMLNLFVQHTSCALSLNENWDEDVR 61

Query:   123 DDTETFLNKIVPEGRSAS-WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
             +D    L++I P  +  + ++H+ EG DDMPAHIKS++ G ++ IPI++G+L  GTWQ
Sbjct:    62 EDMSDALDRIAPADKKGNLYRHSAEGEDDMPAHIKSALIGASVNIPISNGKLATGTWQ 119

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0045132 "meiotic chromosome segregation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002972001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (236 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019349001	RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)	•								0.432
	GSVIVG00008868001	SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa)	•								0.427
	GSVIVG00027326001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (188 aa)	•								0.421
	GSVIVG00016152001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (138 aa)	•			•					0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	209
pfam01894	118	pfam01894, UPF0047, Uncharacterized protein family	3e-50
COG0432	137	COG0432, COG0432, Uncharacterized conserved protei	9e-45
TIGR00149	132	TIGR00149, TIGR00149_YjbQ, secondary thiamine-phos	9e-34

>gnl|CDD|216769 pfam01894, UPF0047, Uncharacterized protein family UPF0047

 Score =  158 bits (403), Expect = 3e-50
 Identities = 53/102 (51%), Positives = 75/102 (73%), Gaps = 4/102 (3%)

Query: 78  HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR 137
             IT ++ + + +  S  K GL H+F+ HT+ASLTINEN D DVR+D E FLN++VPE  
Sbjct: 1   IDITDEVREAVEE--SGVKNGLVHVFVPHTTASLTINENADPDVREDLERFLNRLVPED- 57

Query: 138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
              ++H  EGPD+MPAH+KSS+ G +LT+P+T+G+L +GTWQ
Sbjct: 58  -DPYRHNEEGPDNMPAHLKSSLLGPSLTVPVTNGRLALGTWQ 98

This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important. Length = 118

>gnl|CDD|223509 COG0432, COG0432, Uncharacterized conserved protein [Function unknown]

 Score =  145 bits (367), Expect = 9e-45
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 6/120 (5%)

Query: 61  PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            +  QK +T+   RR     IT ++ K + +  S  K GL  +F+ HT+A+LTINE  + 
Sbjct: 1   MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINEA-EP 57

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +++D E FL K+VPEG  A ++H  EGPD+ PAH+K+S+ G +LTIP+ +G+L +GTWQ
Sbjct: 58  GLKEDIERFLEKLVPEG--AGYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQ 115

Length = 137

>gnl|CDD|129253 TIGR00149, TIGR00149_YjbQ, secondary thiamine-phosphate synthase enzyme

 Score =  117 bits (294), Expect = 9e-34
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +     R     IT +I   +    S  K GL  +++ HT+ASLTINEN D DV  D
Sbjct: 1   QELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHD 58

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            E F  ++VP+    +++H  EG D+M AHIKSS+ G +  +P+ +G+L +GTWQ
Sbjct: 59  IERFFERLVPDD--GNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQ 110

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown [Unknown function, Enzymes of unknown specificity]. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
COG0432	137	Uncharacterized conserved protein [Function unknow	100.0
TIGR00149	132	TIGR00149_YbjQ secondary thiamine-phosphate syntha	100.0
PF01894	118	UPF0047: Uncharacterised protein family UPF0047; I	100.0
KOG3267	138	consensus Uncharacterized conserved protein [Funct	100.0

>COG0432 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.7e-50  Score=327.56  Aligned_cols=128  Identities=41%  Similarity=0.631  Sum_probs=121.0

Q ss_pred             CeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (209)
Q Consensus        61 M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~  139 (209)
                      |+|+|++|+|+|+++ +++|||++|+++|++  ||+++|+|+||++||||||+||| +||+|++||+++|++|+|++.  
T Consensus         1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~--   75 (137)
T COG0432           1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA--   75 (137)
T ss_pred             CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence            789999999999987 999999999999998  99999999999999999999999 699999999999999999985  


Q ss_pred             CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCC-ceeeEE
Q 028395          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGF-RNYSLS  193 (209)
Q Consensus       140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~-R~v~~~  193 (209)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||+    ++. |+|+|.
T Consensus        76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~r~~R~v~v~  134 (137)
T COG0432          76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGPRHRRRVVVK  134 (137)
T ss_pred             CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCCCCccEEEEE
Confidence            599999999999999999999999999999999999999999874    344 777775

>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme

Probab=100.00  E-value=1.3e-45  Score=298.00  Aligned_cols=122  Identities=38%  Similarity=0.577  Sum_probs=111.6

Q ss_pred             EEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCc
Q 028395           67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (209)
Q Consensus        67 tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~  145 (209)
                      +|++.|.+ ++++|||++|+++|++  ||+++|+|+||++||||||++|||+||+|+.||+++|++|+|++.  .|+|+ 
T Consensus         2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~-   76 (132)
T TIGR00149         2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD-   76 (132)
T ss_pred             EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence            47777765 5999999999999998  999999999999999999999999999999999999999999874  59998 


Q ss_pred             cCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS  193 (209)
Q Consensus       146 eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~  193 (209)
                      +++|||+|||||+|+|+|++|||.||+|.|||||+|||.    ++.|+|++.
T Consensus        77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~Dg~r~R~v~v~  128 (132)
T TIGR00149        77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFDGPRTRRIIVK  128 (132)
T ss_pred             CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECCCCCCcEEEEE
Confidence            889999999999999999999999999999999999874    356776553

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.

>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast

Probab=100.00  E-value=1.1e-44  Score=287.66  Aligned_cols=112  Identities=44%  Similarity=0.716  Sum_probs=96.4

Q ss_pred             EeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCccCCCChhhhhhh
Q 028395           78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS  157 (209)
Q Consensus        78 ~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~eG~dN~~AHIKS  157 (209)
                      ||||++|+++|++  ||+++|+|+||++||||||++|||+||+|++||+++|++|||++.  .|+|+.+|++||+||+||
T Consensus         1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks   76 (118)
T PF01894_consen    1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS   76 (118)
T ss_dssp             EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred             CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence            7999999999998  999999999999999999999999999999999999999999984  699999999999999999


Q ss_pred             hccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395          158 SMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS  193 (209)
Q Consensus       158 sLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~  193 (209)
                      +|+|+|++|||.||+|.|||||+|||    +++.|++.+.
T Consensus        77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~dgpr~R~v~v~  116 (118)
T PF01894_consen   77 SLIGPSLTVPVHDGKLALGTWQGIYLVEFDGPRERTVVVQ  116 (118)
T ss_dssp             HHH-SEEEEEEETTEE---TTEEEEEEESS-SSEEEEEEE
T ss_pred             HhcCCeEEEEEECCEEccCCcCEEEEEECCCCCeEEEEEE
Confidence            99999999999999999999999986    3467777764

; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.

>KOG3267 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.5e-41  Score=266.67  Aligned_cols=124  Identities=65%  Similarity=1.141  Sum_probs=117.7

Q ss_pred             EEEEEEcCCCCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeC
Q 028395           65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT  144 (209)
Q Consensus        65 ~~tItV~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~  144 (209)
                      |+.|++...++|++.||+++.+.++++++.+..|++++|.+||+|+|+||||+||+++.|++++|+|+||++.+.+|+|.
T Consensus         1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht   80 (138)
T KOG3267|consen    1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT   80 (138)
T ss_pred             CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence            57899998888999999999999988889999999999999999999999999999999999999999999877789999


Q ss_pred             ccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeeecCCce
Q 028395          145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGLGFRN  189 (209)
Q Consensus       145 ~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~~~~R~  189 (209)
                      .||+||||||+||+|+|+++||||.+|||.|||||+|.+ +|+|.
T Consensus        81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l-~e~r~  124 (138)
T KOG3267|consen   81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQL-AEFRD  124 (138)
T ss_pred             ccCcccchhhhhhccccceEEEEeccCeecccccccchh-hhhhc
Confidence            999999999999999999999999999999999999987 56654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
1vmh_A	144	Crystal Structure Of An Uncharacterized Conserved P		2e-11
1xbf_A	140	X-Ray Structure Northeast Structural Genomics Conso		6e-11
1vmj_A	151	Crystal Structure Of A Putative Thiamin Phosphate S		7e-09
1vmf_A	145	Crystal Structure Of A Ybjq-Like Fold Protein Of Un		9e-09
2p6c_A	137	Crystal Structure Of Hypothetical Protein Aq_2013 F		2e-07
1ve0_A	134	Crystal Structure Of Uncharacterized Protein St2072		2e-07
1vph_A	149	Crystal Structure Of A Ybjq-Like Protein Of Unknown		5e-06
2p6h_A	134	Crystal Structure Of Hypothetical Protein Ape1520 F		6e-06
2cu5_A	129	Crystal Structure Of The Conserved Hypothetical Pro		3e-04

>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907) From Clostridium Acetobutylicum At 1.31 A Resolution Length = 144

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G+A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 39  AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 94
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +  AHIK+S+ G +  I I +G+L +GTWQ
Sbjct: 95  -NSHAHIKASLMGSSQQIIIENGKLKLGTWQ 124

>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum Length = 140

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 27  AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 82
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +  AHIK+S+ G +  I I +G+L +GTWQ
Sbjct: 83  -NSHAHIKASLXGSSQQIIIENGKLKLGTWQ 112

>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52 A Resolution Length = 151

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    ITP +++E  ++ S  K GL     +H +AS+ IN++ +  +  D E +L K+ 
Sbjct: 27  RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+
Sbjct: 84  PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWE 129

>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown Function (Bh3498) From Bacillus Halodurans At 1.46 A Resolution Length = 145

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 12/86 (13%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT----LEGPDDMPA 153
           G+A +  LHT+A +T+NEN D DV+ D    L+++ P      W H     +EG  +  A
Sbjct: 45  GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP------WHHENDRHMEG--NTAA 96
Query: 154 HIKSSMFGCTLTIPITDGQLNMGTWQ 179
           H+K+S  G   T+ I++G+L +GTWQ
Sbjct: 97  HLKTSTVGHAQTLIISEGRLVLGTWQ 122

>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From Aquifex Aeolicus Vf5. Length = 137

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  + +D   +L K+ 
Sbjct: 15  RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ
Sbjct: 72  P--YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQ 115

>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From Sulfolobus Tokodaii Length = 134

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I +++++ +     G+AH+ + HT+ ++ INE  +S +  D   +  K+VP      ++H
Sbjct: 21  ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP--DGEFEH 77
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +   ++  AH+ S++ G +  +PI +G+L++GTWQ
Sbjct: 78  NII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQ 112

>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown Function (Sso2532) From Sulfolobus Solfataricus P2 At 1.76 A Resolution Length = 149

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 85  VKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144
           V++I +  S  K G+  +F+ H++A++  NE ++  + +D  T + +     RS  WKH 
Sbjct: 37  VEQIVEK-SGIKNGICLIFVAHSTAAIVANE-HERGLMEDILTKIKEFTEPSRS--WKHN 92
Query: 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           L   D+  AH+ ++  G     P+ +G+L  GTWQ
Sbjct: 93  L-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQ 126

>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From Aeropyrum Pernix K1 Length = 134

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL  +++ HT+A++ +NE  +  + +D   F+ ++   G    WKH L   +   AH+ +
Sbjct: 35  GLLVVYVPHTTAAVAVNE-AEPRLMEDIVEFIRELTKPG--GPWKHNLVDVNAH-AHLGN 90
Query: 158 SMFGCTLTIPITDGQLNMGTWQ 179
           ++ G +  IP+  G+L++GTWQ
Sbjct: 91  TIIGDSRVIPVVGGRLSLGTWQ 112

>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8 Length = 129

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I +++   LS    GL +LF+ HT+  LT+ E  D  V  D    L ++ P  R    +H
Sbjct: 19  ITRKVEAALS-GHTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQD-RH 76
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            LEG  +  AH+KS + G  L +    G+L +G WQ
Sbjct: 77  -LEG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQ 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	3e-30
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	5e-29
1vmf_A	145	Hypothetical protein; structural genomics, joint c	1e-28
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	2e-27
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	2e-26
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	2e-25
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	3e-23
2p6h_A	134	Hypothetical protein; structural genomics, unknown	8e-23

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1 Length = 151

 Score =  107 bits (269), Expect = 3e-30
 Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 51  NPNPNPMASNPRWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSA 109
           + + + M    +  +K +      RR    ITP + + + +  S  K GL     +H +A
Sbjct: 7   HHHHHHM----KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITA 60

Query: 110 SLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 169
           S+ IN+  +  +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I IT
Sbjct: 61  SVFIND-DEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAIT 119

Query: 170 DGQLNMGTWQ 179
           D ++++G W+
Sbjct: 120 DRKMDLGPWE 129

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus} Length = 137

 Score =  104 bits (260), Expect = 5e-29
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 6/119 (5%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K +T     RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  
Sbjct: 2   KAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDDEE-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           + +D   +L K+ P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ
Sbjct: 59  LHEDIWEWLEKLAPYR--PDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQ 115

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1 Length = 145

 Score =  103 bits (258), Expect = 1e-28
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 60  NPRWAQKTVTLPPLRRGC-HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           +     KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D
Sbjct: 8   HHHHHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENAD 65

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
            DV+ D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTW
Sbjct: 66  PDVKRDMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTW 121

Query: 179 Q 179
           Q
Sbjct: 122 Q 122

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus} Length = 129

 Score =  100 bits (249), Expect = 2e-27
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
                + +P    G   IT K+   ++        GL +LF+ HT+  LT+ E  D  V 
Sbjct: 2   EGVVRLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVA 56

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            D    L ++ P               +  AH+KS + G  L +    G+L +G WQ
Sbjct: 57  QDLLGRLAELAPR----HRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQ 109

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A Length = 144

 Score = 98.2 bits (244), Expect = 2e-26
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 26  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 83

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           P+              +  AHIK+S+ G +  I I +G+L +GTWQ
Sbjct: 84  PK-----VGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQ 124

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii} Length = 134

 Score = 95.2 bits (236), Expect = 2e-25
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 62  RWAQKTVTLPPLRRGCHL-ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K  T+    R   + IT     ++++ +     G+AH+ + HT+ ++ INE     
Sbjct: 2   KIISKEFTVKTRSRFDSIDITE----QVSEAIKGINNGIAHVIVKHTTCAIIINEAESGL 57

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           ++D        + P+G    ++H +   ++  AH+ S++ G +  +PI +G+L++GTWQ
Sbjct: 58  MKDFLNWAKKLVPPDGE---FEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQ 112

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1 Length = 149

 Score = 89.8 bits (222), Expect = 3e-23
 Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +     + +    +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    
Sbjct: 14  KVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGL 71

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           + D          P      WKH L   D+  AH+ ++  G     P+ +G+L  GTWQ
Sbjct: 72  MEDILTKIKEFTEPSRS---WKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQ 126

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix} Length = 134

 Score = 88.6 bits (219), Expect = 8e-23
 Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
             + T+    R     +T K+ + ++        GL  +++ HT+A++ +NE  +  + +
Sbjct: 3   TGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNE-AEPRLME 59

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           D   F+ ++   G             +  AH+ +++ G +  IP+  G+L++GTWQ
Sbjct: 60  DIVEFIRELTKPGGPWKHNLV---DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQ 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	100.0
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	100.0
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	100.0
2p6h_A	134	Hypothetical protein; structural genomics, unknown	100.0
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	100.0
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	100.0
1vmf_A	145	Hypothetical protein; structural genomics, joint c	100.0
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	100.0

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=1.2e-50  Score=327.83  Aligned_cols=128  Identities=26%  Similarity=0.417  Sum_probs=120.8

Q ss_pred             CeEEEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (209)
Q Consensus        61 M~~~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~  139 (209)
                      |+++|++|+|+|++ ++++|||++|+++|++  +|+++|+|+||++||||||+|||| ||+|++||+++|++|||++.  
T Consensus         1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   75 (137)
T 2p6c_A            1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP--   75 (137)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred             CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence            89999999999986 6999999999999998  999999999999999999999999 99999999999999999874  


Q ss_pred             CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS  193 (209)
Q Consensus       140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~  193 (209)
                      +|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||.    ++.|+|++.
T Consensus        76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~  133 (137)
T 2p6c_A           76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVVIK  133 (137)
T ss_dssp             TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCSSCEEEEEE
T ss_pred             CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCCCccEEEEE
Confidence            599999999999999999999999999999999999999999963    456777765

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1

Probab=100.00  E-value=2.4e-49  Score=325.30  Aligned_cols=132  Identities=27%  Similarity=0.442  Sum_probs=122.0

Q ss_pred             CCeEEEEEEEEcCC-CCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCC
Q 028395           60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (209)
Q Consensus        60 ~M~~~~~tItV~T~-~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~  138 (209)
                      -|+-|+++|+|+|. +++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|++|||++..
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~   88 (151)
T 1vmj_A           12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY   88 (151)
T ss_dssp             -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred             hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence            48999999999996 47999999999999998  999999999999999999999999 999999999999999998731


Q ss_pred             CCceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEEE
Q 028395          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLSC  194 (209)
Q Consensus       139 ~~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~~  194 (209)
                      ..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||    +++.|+|++..
T Consensus        89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg~r~R~V~v~i  148 (151)
T 1vmj_A           89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVKI  148 (151)
T ss_dssp             GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEEEEE
T ss_pred             CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCeeEEEEEE
Confidence            169999999999999999999999999999999999999999996    45778887763

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1

Probab=100.00  E-value=7.6e-49  Score=321.78  Aligned_cols=128  Identities=24%  Similarity=0.400  Sum_probs=118.8

Q ss_pred             CCeEEEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCC
Q 028395           60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (209)
Q Consensus        60 ~M~~~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~  138 (209)
                      -|++|+++|+|+|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|++|||+++ 
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~-   87 (149)
T 1vph_A           12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   87 (149)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence            499999999999987 6999999999999998  999999999999999999999999 99999999999999999874 


Q ss_pred             CCceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cC-CceeeEE
Q 028395          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LG-FRNYSLS  193 (209)
Q Consensus       139 ~~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~-~R~v~~~  193 (209)
                       +|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||.    ++ .|+|++.
T Consensus        88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~r~~R~v~v~  145 (149)
T 1vph_A           88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVE  145 (149)
T ss_dssp             -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEE
T ss_pred             -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCCCeEEEEE
Confidence             5999988 9999999999999999999999999999999999973    22 4556554

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}

Probab=100.00  E-value=1.2e-48  Score=315.20  Aligned_cols=124  Identities=27%  Similarity=0.445  Sum_probs=116.4

Q ss_pred             EEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCce
Q 028395           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (209)
Q Consensus        64 ~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~  142 (209)
                      +|++|+|+|+++ +++|||++|+++|++  +|+++|+|+||++||||||+|||| ||+|++||+++|++|||++.  +|+
T Consensus         2 ~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y~   76 (134)
T 2p6h_A            2 ETGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PWK   76 (134)
T ss_dssp             EEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SCG
T ss_pred             eEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Ccc
Confidence            689999999875 999999999999998  999999999999999999999999 99999999999999999874  699


Q ss_pred             eCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS  193 (209)
Q Consensus       143 H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~  193 (209)
                      |++| +|||+|||||+|+|+|++|||.||+|.|||||+|||    +++.|+|++.
T Consensus        77 H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~  130 (134)
T 2p6h_A           77 HNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRERTVNLL  130 (134)
T ss_dssp             GGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEE
T ss_pred             ccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCCCCceEEEEE
Confidence            9998 999999999999999999999999999999999996    3466777775

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.9e-48  Score=314.02  Aligned_cols=126  Identities=27%  Similarity=0.456  Sum_probs=117.7

Q ss_pred             CeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (209)
Q Consensus        61 M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~  139 (209)
                      |+++|++|+|+|+++ +++|||++|+++|+    |+++|+|+||++||||||+|||| ||+|++||+++|++|+|++.  
T Consensus         1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   73 (134)
T 1ve0_A            1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG--   73 (134)
T ss_dssp             CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred             CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence            899999999999875 99999999999995    89999999999999999999999 99999999999999999874  


Q ss_pred             CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEEE
Q 028395          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLSC  194 (209)
Q Consensus       140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~~  194 (209)
                      .|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||    +++.|+|++..
T Consensus        74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i  131 (134)
T 1ve0_A           74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKS  131 (134)
T ss_dssp             CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE
T ss_pred             CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCCCCeeEEEEEE
Confidence            5999998 999999999999999999999999999999999996    34677887753

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A

Probab=100.00  E-value=1e-46  Score=307.73  Aligned_cols=122  Identities=34%  Similarity=0.439  Sum_probs=112.6

Q ss_pred             EEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCcee
Q 028395           65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH  143 (209)
Q Consensus        65 ~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H  143 (209)
                      .++|+|+|.+ ++++|||++|+++|++  +|+++|+|+||++||||||+||||+||+|++||+++|++|||++.  .|+|
T Consensus        16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H   91 (144)
T 1vmh_A           16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH   91 (144)
T ss_dssp             -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred             cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence            3579999985 6999999999999998  999999999999999999999999999999999999999999874  5999


Q ss_pred             CccCCCChhhhhhhhccCceEEEEeeCCeecccccceEee----ecCCceeeEE
Q 028395          144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRN----GLGFRNYSLS  193 (209)
Q Consensus       144 ~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~----~~~~R~v~~~  193 (209)
                      +   +|||+|||||+|+|+|++|||.||+|.|||||+|||    +++.|+|++.
T Consensus        92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~R~v~v~  142 (144)
T 1vmh_A           92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVK  142 (144)
T ss_dssp             T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEE
T ss_pred             C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEE
Confidence            7   789999999999999999999999999999999996    3466777765

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1

Probab=100.00  E-value=3.9e-46  Score=304.56  Aligned_cols=124  Identities=32%  Similarity=0.429  Sum_probs=112.8

Q ss_pred             EEEEEEEcCCC-CeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCce
Q 028395           64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (209)
Q Consensus        64 ~~~tItV~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~  142 (209)
                      ..++|+|.|.+ ++++|||++|+++|++  +|+++|+|+||++||||||+||||+||+|++||+++|++|||++. ..|+
T Consensus        12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~   88 (145)
T 1vmf_A           12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR   88 (145)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred             ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence            45789999986 6999999999999998  999999999999999999999999999999999999999999874 2699


Q ss_pred             eCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cC-CceeeEE
Q 028395          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LG-FRNYSLS  193 (209)
Q Consensus       143 H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~-~R~v~~~  193 (209)
                      | .||  ||+|||||+|+|+|++|||.||+|.|||||+|||.    ++ .|+|++.
T Consensus        89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~~R~v~v~  141 (145)
T 1vmf_A           89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVK  141 (145)
T ss_dssp             C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEEEE
T ss_pred             c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcCCCCCcEEEEE
Confidence            9 455  99999999999999999999999999999999973    34 5777665

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}

Probab=100.00  E-value=7.8e-45  Score=291.74  Aligned_cols=118  Identities=31%  Similarity=0.459  Sum_probs=105.3

Q ss_pred             EEEEcCCCCeEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCcc
Q 028395           67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE  146 (209)
Q Consensus        67 tItV~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~e  146 (209)
                      +|+|++++++++|||++|+++|++     ++|+|+||++||||||+||||+||+|++||+++|+||+|+++ .+|+| .|
T Consensus         6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~e   78 (129)
T 2cu5_A            6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-LE   78 (129)
T ss_dssp             EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-TT
T ss_pred             EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-CC
Confidence            577776668999999999999963     999999999999999999999999999999999999999872 25999 45


Q ss_pred             CCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395          147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS  193 (209)
Q Consensus       147 G~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~  193 (209)
                      |  ||+|||||+|+|+|++|||.||+|.|||||+|||.    ++.|+|++.
T Consensus        79 G--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~  127 (129)
T 2cu5_A           79 G--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVR  127 (129)
T ss_dssp             S--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSEEEEEEEE
T ss_pred             C--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEE
Confidence            5  99999999999999999999999999999999963    356677664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1vmja_	139	d.273.1.1 (A:) Hypothetical protein TM0723 {Thermo	4e-37
d1vmfa_	136	d.273.1.1 (A:) Hypothetical protein BH3498 {Bacill	2e-33
d1vmha_	129	d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Cl	1e-32
d1vpha_	138	d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfo	6e-29

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]} Length = 139

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

 Score =  124 bits (312), Expect = 4e-37
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 4/119 (3%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +  +K +      RR    ITP + + + +  S  K GL     +H +AS+ IN++    
Sbjct: 2   KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDDEP-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+
Sbjct: 59  LHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWE 117

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]} Length = 136

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

 Score =  114 bits (287), Expect = 2e-33
 Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
            KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D DV+ 
Sbjct: 4   MKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKR 61

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTWQ
Sbjct: 62  DMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQ 113

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]} Length = 129

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  112 bits (281), Expect = 1e-32
 Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 11  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 68

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           P+     +KH      +  AHIK+S+ G +  I I +G+L +GTWQ
Sbjct: 69  PKV--GDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQ 109

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  103 bits (257), Expect = 6e-29
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    + D     L KI 
Sbjct: 16  QFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGLMED----ILTKIK 69

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
                +         D+  AH+ ++  G     P+ +G+L  GTWQ
Sbjct: 70  EFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQ 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1vmja_	139	Hypothetical protein TM0723 {Thermotoga maritima [	100.0
d1vmfa_	136	Hypothetical protein BH3498 {Bacillus halodurans [	100.0
d1vpha_	138	Hypothetical protein SSO2532 {Sulfolobus solfatari	100.0
d1vmha_	129	B.subtilis YugU ortolog CAC0907 {Clostridium aceto	100.0

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.3e-49  Score=318.37  Aligned_cols=130  Identities=28%  Similarity=0.448  Sum_probs=121.4

Q ss_pred             CeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCC
Q 028395           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (209)
Q Consensus        61 M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~  139 (209)
                      |++++++|+++|+++ +++|||++|+++|++  |||++|+|+||++||||||+|||| ||+|+.||+++|++|||+++..
T Consensus         1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~~~~~   77 (139)
T d1vmja_           1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPYS   77 (139)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCGG
T ss_pred             CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhccCCcc
Confidence            899999999999874 899999999999998  999999999999999999999999 9999999999999999987434


Q ss_pred             CceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS  193 (209)
Q Consensus       140 ~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~  193 (209)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||.    ++.|+|.+.
T Consensus        78 ~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~dg~r~R~v~v~  135 (139)
T d1vmja_          78 QYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVK  135 (139)
T ss_dssp             GCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEEEE
T ss_pred             ccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEECcCCCceEEEEE
Confidence            699999999999999999999999999999999999999999864    467777764

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=6.3e-46  Score=298.09  Aligned_cols=124  Identities=31%  Similarity=0.379  Sum_probs=111.8

Q ss_pred             EEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCce
Q 028395           64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (209)
Q Consensus        64 ~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~  142 (209)
                      |+++|+|+|+++ +++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|+.||+++|++|+|+..  .|.
T Consensus         3 ~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~~~--~~~   78 (136)
T d1vmfa_           3 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH--END   78 (136)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC--TTC
T ss_pred             cEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCccc--ccc
Confidence            689999999876 799999999999998  999999999999999999999999999999999999999999863  233


Q ss_pred             eCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeeec----C-CceeeEE
Q 028395          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGL----G-FRNYSLS  193 (209)
Q Consensus       143 H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~~----~-~R~v~~~  193 (209)
                      |  +++|||+|||||+|+|+|++|||.||+|.|||||+|||..    + .|+|++.
T Consensus        79 ~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~d~~r~~R~v~v~  132 (136)
T d1vmfa_          79 R--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVK  132 (136)
T ss_dssp             C--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEEEE
T ss_pred             e--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEccCCCCceEEEEE
Confidence            3  4688999999999999999999999999999999999742    3 4666654

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=7e-46  Score=298.10  Aligned_cols=128  Identities=24%  Similarity=0.406  Sum_probs=117.0

Q ss_pred             CCeEEEEEEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCC
Q 028395           60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (209)
Q Consensus        60 ~M~~~~~tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~  138 (209)
                      .|++++++|+|+|.++ +++|||++|+++|++  ||+++|+|+||++||||||+|||| ||++++|++++|++++|++. 
T Consensus         1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~~~-   76 (138)
T d1vpha_           1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   76 (138)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhccccC-
Confidence            4999999999999876 999999999999998  999999999999999999999998 88999999999999999873 


Q ss_pred             CCceeCccCCCChhhhhhhhccCceEEEEeeCCeecccccceEeeec----C-CceeeEE
Q 028395          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNGL----G-FRNYSLS  193 (209)
Q Consensus       139 ~~Y~H~~eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~~----~-~R~v~~~  193 (209)
                       .|+|+. +||||+|||||+|+|+|++|||.||+|.||+||+|||..    + .|+|.+.
T Consensus        77 -~y~h~~-~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~~~~R~v~v~  134 (138)
T d1vpha_          77 -SWKHNL-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITVE  134 (138)
T ss_dssp             -CCGGGG-TCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEEE
T ss_pred             -ccceec-CCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCCCCceEEEEE
Confidence             699964 799999999999999999999999999999999999843    2 3555554

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=1.9e-45  Score=293.24  Aligned_cols=120  Identities=33%  Similarity=0.435  Sum_probs=110.1

Q ss_pred             EEEEcCCCC-eEEeCcHHHHHHHhhhccCccccEEEEEecccceEEEEeecCCcchHHHHHHHHhhhCCCCCCCCceeCc
Q 028395           67 TVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (209)
Q Consensus        67 tItV~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vf~~HTTAsLtInEn~DP~l~~Dl~~~L~rLVP~~~~~~Y~H~~  145 (209)
                      +|+|+|+++ +++|||++|+++|++  +|+++|+|+||++||||||+||||+||+|+.||+++|++|+|++.  +|+|. 
T Consensus         3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~~~--~y~H~-   77 (129)
T d1vmha_           3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKHV-   77 (129)
T ss_dssp             EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCCT-
T ss_pred             EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCCCC--CCccc-
Confidence            689999875 799999999999998  999999999999999999999999999999999999999999974  69995 


Q ss_pred             cCCCChhhhhhhhccCceEEEEeeCCeecccccceEeee----cCCceeeEE
Q 028395          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQVCRNG----LGFRNYSLS  193 (209)
Q Consensus       146 eG~dN~~AHIKSsLlG~SltIPV~dGkL~LGTWQ~I~~~----~~~R~v~~~  193 (209)
                        ++||+||+||+|+|+|++|||.||+|.|||||+|||.    ++.|+|.+.
T Consensus        78 --~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~d~~r~R~v~v~  127 (129)
T d1vmha_          78 --EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVK  127 (129)
T ss_dssp             --TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEE
T ss_pred             --cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEECcCCceeEEEEE
Confidence              5699999999999999999999999999999999874    356666654