Citrus Sinensis ID: 028407

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccEEEccccccEEEEEccccccccEEEcccccccEEEEHHHHHHHHHccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccc
ccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccEEEEccccccccccccEEccccccccccEEEEEEEcccccEEEEEcccccccEEEEcccccccEEEEccHHHHHHHcccccEEEEEEEcccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHHcHHHHHHHHHccc
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALdldadffdkpeMLGQAIATLRLLHyegqisdpskgmygagahsdyGLITLLATdevaglqickdrdakpqlwedvapmkgAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVepshdclveclptcksdknppkfppikcetyLSQRYKDTHADLnmynkqqt
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPtcksdknppkfppIKCETYLSQRYKDTHADLNMYNKQQT
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIalaldldadFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
**TIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCK*********PIKCETYLSQ*****************
**TIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSK*MYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHAD*********
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQ**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTIFLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNKQQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.698 0.402 0.293 6e-17
O49561338 Gibberellin 2-beta-dioxyg no no 0.717 0.443 0.331 2e-16
A6BM06368 1-aminocyclopropane-1-car N/A no 0.741 0.421 0.283 2e-16
Q76NT9368 1-aminocyclopropane-1-car no no 0.741 0.421 0.283 2e-16
F4K7D5293 Probable flavonol synthas no no 0.564 0.402 0.379 1e-15
P40902397 Sexual differentiation pr yes no 0.822 0.433 0.310 2e-15
Q39103358 Gibberellin 3-beta-dioxyg no no 0.794 0.463 0.320 3e-15
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.722 0.445 0.335 4e-15
Q9ZT84347 Gibberellin 3-beta-dioxyg no no 0.626 0.377 0.326 9e-15
Q07512348 Flavonol synthase/flavano N/A no 0.741 0.445 0.333 2e-14
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 21/167 (12%)

Query: 13  FQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQIS--- 69
           F+  ++ ++    ++  ++  +IA++L+L AD+F         +   R+ +Y   IS   
Sbjct: 150 FKDTILTYIDKVTKLGHSLMELIAISLNLSADYF-SSRYTKDPLILYRIFNYPSIISSGD 208

Query: 70  ----------DPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKG 119
                     D  K  +G G H+DYG++T+L  D+V GLQ+          W    P+KG
Sbjct: 209 DNKTTGESSDDNDKVEWGVGEHTDYGVLTILYQDDVGGLQVHSKNG-----WISAPPIKG 263

Query: 120 AFIVNLGDMLERWSNCIFKSTLHRVL--GTGRERYSIAFFVEPSHDC 164
            F+ N+GDML+R +  +++ST HRV    +GR+R S   F +P+ + 
Sbjct: 264 TFVCNIGDMLDRMTGGLYRSTPHRVELNRSGRDRISFPLFFDPNFNS 310

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|F4K7D5|FLS6_ARATH Probable flavonol synthase 6 OS=Arabidopsis thaliana GN=FLS6 PE=3 SV=1 Back     alignment and function description
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
225445104 358 PREDICTED: probable iron/ascorbate oxido 0.875 0.511 0.874 3e-91
297738763 330 unnamed protein product [Vitis vinifera] 0.875 0.554 0.874 5e-91
255641899 331 unknown [Glycine max] 0.880 0.555 0.836 5e-90
388522983 340 unknown [Medicago truncatula] 0.880 0.541 0.826 3e-89
225445102 364 PREDICTED: probable iron/ascorbate oxido 0.880 0.505 0.842 4e-89
255546339 340 Hyoscyamine 6-dioxygenase, putative [Ric 0.880 0.541 0.798 6e-88
356495885 331 PREDICTED: probable iron/ascorbate oxido 0.880 0.555 0.809 1e-87
255636224 331 unknown [Glycine max] 0.880 0.555 0.809 1e-87
224143624 336 predicted protein [Populus trichocarpa] 0.875 0.544 0.819 2e-86
223944829 329 unknown [Zea mays] gi|413947624|gb|AFW80 0.875 0.556 0.797 7e-86
>gi|225445104|ref|XP_002283713.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  339 bits (870), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/183 (87%), Positives = 170/183 (92%)

Query: 26  EVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYG 85
           EVAKAVARIIALALDL+ DFFDKPEMLG  IATLRLLHYEGQISDP KG+YGAGAHSDYG
Sbjct: 175 EVAKAVARIIALALDLERDFFDKPEMLGDPIATLRLLHYEGQISDPLKGIYGAGAHSDYG 234

Query: 86  LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL 145
           LITLLATD+V GLQICKD+DA+PQ WE VAP+KGAFIVNLGDMLERWSNCIFKSTLHRVL
Sbjct: 235 LITLLATDDVLGLQICKDKDARPQTWEYVAPLKGAFIVNLGDMLERWSNCIFKSTLHRVL 294

Query: 146 GTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYN 205
             G ERYSIA+FVEPSHDCLVECLPTCKSDKNPPKFPP+KC TYL+QRYKDTHADLN+Y 
Sbjct: 295 VHGPERYSIAYFVEPSHDCLVECLPTCKSDKNPPKFPPVKCGTYLTQRYKDTHADLNLYT 354

Query: 206 KQQ 208
           K Q
Sbjct: 355 KHQ 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738763|emb|CBI28008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255641899|gb|ACU21218.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388522983|gb|AFK49553.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225445102|ref|XP_002283708.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546339|ref|XP_002514229.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223546685|gb|EEF48183.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356495885|ref|XP_003516801.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|255636224|gb|ACU18453.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224143624|ref|XP_002325020.1| predicted protein [Populus trichocarpa] gi|222866454|gb|EEF03585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|223944829|gb|ACN26498.1| unknown [Zea mays] gi|413947624|gb|AFW80273.1| hypothetical protein ZEAMMB73_441487 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.894 0.568 0.666 8.2e-67
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.889 0.741 0.632 1.2e-65
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.889 0.650 0.638 8.5e-65
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.866 0.548 0.617 2.4e-60
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.827 0.700 0.479 9.1e-45
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.909 0.544 0.401 2.9e-32
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.598 0.394 0.428 6.3e-21
UNIPROTKB|G4N6Z0336 MGG_06487 "Thymine dioxygenase 0.708 0.440 0.390 1.7e-20
ASPGD|ASPL0000015471335 AN3672 [Emericella nidulans (t 0.851 0.531 0.333 9.2e-20
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.899 0.534 0.311 1.6e-19
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 126/189 (66%), Positives = 154/189 (81%)

Query:    19 YFVSAPREVAKAVARIIXXXXXXXXXFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGA 78
             Y   A R V+ A+AR++         +FD+ EMLG+ IAT+RLL Y+G ISDPSKG+Y  
Sbjct:   142 YHQEALR-VSMAIARLLALALDLDVGYFDRTEMLGKPIATMRLLRYQG-ISDPSKGIYAC 199

Query:    79 GAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFK 138
             GAHSD+G++TLLATD V GLQICKD++A PQ WE V P+KGAFIVNLGDMLERWSN  FK
Sbjct:   200 GAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFK 259

Query:   139 STLHRVLGTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTH 198
             STLHRVLG G+ERYSI FFVEP+HDCLVECLPTCKS+   PK+PPIKC TYL+QRY++TH
Sbjct:   260 STLHRVLGNGQERYSIPFFVEPNHDCLVECLPTCKSESELPKYPPIKCSTYLTQRYEETH 319

Query:   199 ADLNMYNKQ 207
             A+L++Y++Q
Sbjct:   320 ANLSIYHQQ 328
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|G4N6Z0 MGG_06487 "Thymine dioxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015471 AN3672 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016670001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (330 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 3e-97
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 9e-53
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 3e-45
PLN02485329 PLN02485, PLN02485, oxidoreductase 8e-32
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-27
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-24
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-22
PLN02997325 PLN02997, PLN02997, flavonol synthase 8e-22
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 8e-21
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 5e-20
PLN02947374 PLN02947, PLN02947, oxidoreductase 6e-20
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-19
PLN02704335 PLN02704, PLN02704, flavonol synthase 4e-19
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-17
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 4e-17
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-16
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-16
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 5e-16
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-15
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-13
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-13
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-13
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-12
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-11
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 3e-10
PLN02904357 PLN02904, PLN02904, oxidoreductase 3e-08
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  285 bits (731), Expect = 3e-97
 Identities = 129/181 (71%), Positives = 158/181 (87%), Gaps = 1/181 (0%)

Query: 27  VAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGL 86
           V+ A+A+++ALALDLD  +FD+ EMLG+ IAT+RLL Y+G ISDPSKG+Y  GAHSD+G+
Sbjct: 152 VSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQG-ISDPSKGIYACGAHSDFGM 210

Query: 87  ITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG 146
           +TLLATD V GLQICKD++A PQ WE V P+KGAFIVNLGDMLERWSN  FKSTLHRVLG
Sbjct: 211 MTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLG 270

Query: 147 TGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNK 206
            G+ERYSI FFVEP+HDCLVECLPTCKS+ + PK+PPIKC TYL+QRY++THA L++Y++
Sbjct: 271 NGQERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQRYEETHAKLSIYHQ 330

Query: 207 Q 207
           Q
Sbjct: 331 Q 331

Length = 332
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02997325 flavonol synthase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02947374 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.92
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.26
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.95
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 94.46
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.06
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 92.46
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 87.23
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=9.5e-54  Score=372.30  Aligned_cols=196  Identities=65%  Similarity=1.156  Sum_probs=175.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccceeeeccccCCCCCCCCCcccccccCCCCceeE
Q 028407           10 FHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITL   89 (209)
Q Consensus        10 ~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~~~~~~g~~~HtD~~~lTl   89 (209)
                      .|+||+.+++|+++|.+++..|+++||++||+++++|.+......+.+.+|++||||. ++++...+|+++|||+|+|||
T Consensus       135 ~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~-~~~~~~~~g~~~HTD~g~lTl  213 (332)
T PLN03002        135 LPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGI-SDPSKGIYACGAHSDFGMMTL  213 (332)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhccccccCCCchheeeeeCCCC-CCcccCccccccccCCCeEEE
Confidence            5789999999999999999999999999999999999843355666789999999994 444445789999999999999


Q ss_pred             EeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCCCCCceEEEEccCCCCCCeEecC
Q 028407           90 LATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDCLVECL  169 (209)
Q Consensus        90 l~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~~~~R~Si~~F~~p~~d~~i~p~  169 (209)
                      |+||+++||||+.+.+..+|+|++|+|.||++|||+||+||+||||+|+|++|||+.++.+|||++||+.|+.|++|+|+
T Consensus       214 L~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRVv~~~~~R~Sia~F~~p~~d~~i~pl  293 (332)
T PLN03002        214 LATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTLHRVLGNGQERYSIPFFVEPNHDCLVECL  293 (332)
T ss_pred             EeeCCCCceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHHHHhCCeeECcCCeecCCCCCeeEEEEEecCCCCeeEecC
Confidence            99999999999875322346899999999999999999999999999999999999666789999999999999999999


Q ss_pred             CCCCCCCCCCCCCCccHHHHHHHHHHhhhcccccccc
Q 028407          170 PTCKSDKNPPKFPPIKCETYLSQRYKDTHADLNMYNK  206 (209)
Q Consensus       170 ~~~~~~~~p~~y~~~t~~e~~~~~~~~~~~~~~~~~~  206 (209)
                      ++++++++|++|+|++++||+..++.+.|..+....+
T Consensus       294 ~~~~~~~~p~~y~~~~~~e~l~~~~~~~~~~~~~~~~  330 (332)
T PLN03002        294 PTCKSESDLPKYPPIKCSTYLTQRYEETHAKLSIYHQ  330 (332)
T ss_pred             CcccCCCCcccCCCccHHHHHHHHHHHHhhhhccccC
Confidence            9999999999999999999999999999986665544

>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-18
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-12
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-11
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-08
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-08
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-08
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-07
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-07
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 12/146 (8%)
Query: 57  ATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAP 116
           + LRLLHY   I   + G+  AGAH D   ITLL   E  GL++  DRD +   W  + P
Sbjct: 169 SVLRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINP 222
Query: 117 MKGAFIVNLGDMLERWSNCIFKSTLHRVLG-----TGRERYSIAFFVEPSHDCLVECLPT 171
             G  ++N+GD LER +N +  ST+HRV+       G  RYS  FF+  + D  ++ L  
Sbjct: 223 PPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQN 282
Query: 172 CKSDKNPPKFP-PIKCETYLSQRYKD 196
           C + +NP ++P  I  + +L QR ++
Sbjct: 283 CVTAENPDRYPESITADEFLQQRLRE 308
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-82
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-82
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-73
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 5e-64
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-41
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-40
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  245 bits (628), Expect = 5e-82
 Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 15/191 (7%)

Query: 14  QVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSK 73
                 + S    +   V   IA  L L+ DFF     +    + LRLLHY     D   
Sbjct: 129 HDVSWLYNSL-DGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLLHYPPIPKDA-- 183

Query: 74  GMYGAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWS 133
               AGAH D   ITLL   E  GL++  DRD +   W  + P  G  ++N+GDMLER +
Sbjct: 184 TGVRAGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVINIGDMLERLT 239

Query: 134 NCIFKSTLHRVL-----GTGRERYSIAFFVEPSHDCLVECLPTCKSDKNPPKFP-PIKCE 187
           N +  ST+HRV+       G  RYS  FF+  + D  ++ L  C + +NP ++P  I  +
Sbjct: 240 NNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITAD 299

Query: 188 TYLSQRYKDTH 198
            +L QR ++  
Sbjct: 300 EFLQQRLREIK 310
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 93.9
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.22
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 91.18
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 90.32
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 87.61
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 87.39
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 87.12
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 80.9
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=1.4e-52  Score=361.09  Aligned_cols=185  Identities=32%  Similarity=0.570  Sum_probs=167.4

Q ss_pred             ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccceeeeccccCCCCCCCCCcccccccCCC
Q 028407            5 FLCLCFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDY   84 (209)
Q Consensus         5 ~~~l~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~~~~~~g~~~HtD~   84 (209)
                      ..+-..|+||+.+++|+++|.+++..|+++||++||+++++|.  ..+..+.+.+|++||||.+ .++.. +|+++|||+
T Consensus       119 ~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~--~~~~~~~~~lr~~~Ypp~~-~~~~~-~g~~~HtD~  194 (312)
T 3oox_A          119 VWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLLHYPPIP-KDATG-VRAGAHGDI  194 (312)
T ss_dssp             CCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTH--HHHTTCCCEEEEEEECCCS-SCCC---CEEEECCC
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH--HHhcCCcceeeeEecCCCC-CCcCC-cCccceecC
Confidence            3444578999999999999999999999999999999999998  6777778999999999944 33334 899999999


Q ss_pred             CceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCC-----CCCceEEEEccC
Q 028407           85 GLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGT-----GRERYSIAFFVE  159 (209)
Q Consensus        85 ~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~-----~~~R~Si~~F~~  159 (209)
                      |+||||+||+++||||+..+|    +|++|+|.||++|||+||+||+||||+|||+.|||+++     +.+|||++||++
T Consensus       195 g~lTlL~qd~v~GLqV~~~~g----~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~  270 (312)
T 3oox_A          195 NTITLLLGAEEGGLEVLDRDG----QWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLH  270 (312)
T ss_dssp             SSEEEEECCTTSCEEEECTTS----CEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEEC
T ss_pred             ceEEEEeEcCcCceEEECCCC----cEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEec
Confidence            999999999999999997764    59999999999999999999999999999999999943     467999999999


Q ss_pred             CCCCCeEecCCCCCCCCCCCCCC-CccHHHHHHHHHHhh
Q 028407          160 PSHDCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKDT  197 (209)
Q Consensus       160 p~~d~~i~p~~~~~~~~~p~~y~-~~t~~e~~~~~~~~~  197 (209)
                      |+.|++|+|+++++++++|++|+ ++|++||+..|+++.
T Consensus       271 P~~d~~i~pl~~~v~~~~p~~y~~~~t~~eyl~~r~~~~  309 (312)
T 3oox_A          271 FASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREI  309 (312)
T ss_dssp             CCTTCEECCCGGGCCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred             CCCCcEEecCccccCCCCcccCCCCeeHHHHHHHHHHHh
Confidence            99999999999999999999999 999999999998854
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-35
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-28
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 8e-28
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 5e-27
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  125 bits (315), Expect = 2e-35
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 20  FVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAG 79
           +    R +A  V + +++ L L+ D  +K     + +  L++           +   G  
Sbjct: 171 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEEL-LLQMKINYYPKCPQPELALGVE 229

Query: 80  AHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKS 139
           AH+D   +T +  + V GLQ+  +       W     +  + ++++GD LE  SN  +KS
Sbjct: 230 AHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGKYKS 284

Query: 140 TLHRVL-GTGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPIKCETYLSQR 193
            LHR L    + R S A F EP  D +V + LP   S ++P KFPP     ++  +
Sbjct: 285 ILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 93.92
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 87.47
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Isopenicillin N synthase
species: Emericella nidulans [TaxId: 162425]

Probab=100.00  E-value=6.9e-50  Score=343.15  Aligned_cols=186  Identities=22%  Similarity=0.292  Sum_probs=163.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccccCCccceeeeccccCCCCCC--------CCCcccccc
Q 028407            9 CFHIFQVCLIYFVSAPREVAKAVARIIALALDLDADFFDKPEMLGQAIATLRLLHYEGQISDP--------SKGMYGAGA   80 (209)
Q Consensus         9 ~~~~f~~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~rl~~Yp~~~~~~--------~~~~~g~~~   80 (209)
                      ..|+||+.+.+|+++|.+++..||++++++||+++++|.......+..+.+|+++||+.++.+        +...+|+++
T Consensus       132 ~~p~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~~g~~~  211 (329)
T d1odma_         132 KHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEW  211 (329)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEE
T ss_pred             ccchHHHHHHHHHHHhhhhheeehhhhHhhcCccHHHHHHHhhccccchhhhccccccCCCCCchhcccccccccccccc
Confidence            457899999999999999999999999999999999998322334566778888887654322        224689999


Q ss_pred             cCCCCceeEEeecCCCceeEEecCCCCCCceEEccCCCCcEEEechhHHHHHhCCeeecccccccCCCCCceEEEEccCC
Q 028407           81 HSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEP  160 (209)
Q Consensus        81 HtD~~~lTll~~d~~~GLqV~~~~g~~~g~W~~v~~~~g~lvVn~Gd~l~~~TnG~~~s~~HRV~~~~~~R~Si~~F~~p  160 (209)
                      |||+|+||||+||.++||||++++     .|++|+|.+|++|||+||+||+||||+|||++|||+.++.+|||++||++|
T Consensus       212 HtD~g~lTlL~qd~~~GLqv~~~~-----~W~~v~~~~~~~vVN~Gd~l~~~Tng~~kst~HRV~~~~~~R~Si~~F~~P  286 (329)
T d1odma_         212 HEDVSLITVLYQSNVQNLQVETAA-----GYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNL  286 (329)
T ss_dssp             ECCSSSEEEEEECSSCCEEEEETT-----EEEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEECCCSCEEEEEEEECC
T ss_pred             CCCccccceeecccceeeeeeccC-----CceeeccccceEEEehhhhHHHHhCCEecCCCceecCCCCCEEEEEEEECC
Confidence            999999999999999999999864     399999999999999999999999999999999999777899999999999


Q ss_pred             CCCCeEecCCCCCCCCCCCCCCCccHHHHHHHHHHhhhcc
Q 028407          161 SHDCLVECLPTCKSDKNPPKFPPIKCETYLSQRYKDTHAD  200 (209)
Q Consensus       161 ~~d~~i~p~~~~~~~~~p~~y~~~t~~e~~~~~~~~~~~~  200 (209)
                      +.|++|+|++.+..+ .+++|+|++++||++.++.+.++.
T Consensus       287 ~~d~~i~pl~~~~~~-~~~~~~~~~~~e~l~~~l~~~~~~  325 (329)
T d1odma_         287 GYDSVIDPFDPREPN-GKSDREPLSYGDYLQNGLVSLINK  325 (329)
T ss_dssp             CTTCBCCCCCTTSTT-CCCSSCCCBHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCCcccCCC-CcccCCCccHHHHHHHHHHHHHHH
Confidence            999999999988544 567999999999999999988754
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure