Citrus Sinensis ID: 028412

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV
cHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEcccccccccHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEEEEEEccEEEEEEcccccccccccc
ccHHHHHHHHHHHHHHHHccHHHHHHHcccccccEEEEEEccccccHHHHcccccccEEEEEEHHHccccccccccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEEEEEEcc
MANDAYEDAIAGLTKLLRKNpdlygalakgqspkflvfacsdsrvcpshilnfqpgeafmvrnianmvppydqkkysgagAAIEYAVLHLKVENIVVIGHSccggikglmsipdngttasDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNvslgnlltypfVRESVVKNTLAlkgahydfvngkfelwdldfnilpsvsv
MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFnilpsvsv
MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV
********AIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNIL*****
*ANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV
MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSA************FEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV
MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVS*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANDAYEDAIAGLTKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
P46513190 Carbonic anhydrase 2 (Fra N/A no 0.899 0.989 0.808 4e-87
P27141321 Carbonic anhydrase, chlor N/A no 0.985 0.641 0.714 4e-84
P16016319 Carbonic anhydrase, chlor N/A no 0.918 0.601 0.744 6e-84
P42737259 Carbonic anhydrase 2, chl no no 0.909 0.733 0.742 5e-82
P27140347 Carbonic anhydrase, chlor no no 0.995 0.599 0.683 9e-82
P17067328 Carbonic anhydrase, chlor N/A no 0.913 0.582 0.727 3e-81
P46512330 Carbonic anhydrase 1 OS=F N/A no 0.937 0.593 0.704 2e-80
P46511330 Carbonic anhydrase OS=Fla N/A no 0.937 0.593 0.704 6e-80
P46281329 Carbonic anhydrase OS=Fla N/A no 0.937 0.595 0.704 1e-79
P46510330 Carbonic anhydrase OS=Fla N/A no 0.937 0.593 0.698 2e-79
>sp|P46513|CAH2_FLALI Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1 Back     alignment and function desciption
 Score =  320 bits (820), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 167/188 (88%)

Query: 20  NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79
           NP LYG LAKGQSPKFLVFACSDSRVCPSHIL+FQPGEAF+VRNIANMVPPYD  K+SGA
Sbjct: 1   NPTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDTIKHSGA 60

Query: 80  GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 139
           GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD+GT ASDFIE+WVK+   AKSKVK 
Sbjct: 61  GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTPASDFIEQWVKLGLPAKSKVKA 120

Query: 140 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDL 199
            CN+L F + C  CEKEAVNVSLGNLLTYPFVR+++V   L+LKGAHYDFVNG F+LW+L
Sbjct: 121 NCNNLEFADLCTKCEKEAVNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLWNL 180

Query: 200 DFNILPSV 207
           DF I PS+
Sbjct: 181 DFGISPSL 188
Reversible hydration of carbon dioxide.
Flaveria linearis (taxid: 4225)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function description
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
255568812280 carbonic anhydrase, putative [Ricinus co 1.0 0.746 0.710 9e-99
224107829256 predicted protein [Populus trichocarpa] 1.0 0.816 0.687 6e-97
118486197256 unknown [Populus trichocarpa] 1.0 0.816 0.687 8e-97
356501896278 PREDICTED: carbonic anhydrase, chloropla 1.0 0.751 0.687 2e-95
357485881278 Carbonic anhydrase [Medicago truncatula] 0.937 0.705 0.831 1e-94
357485883290 Carbonic anhydrase [Medicago truncatula] 0.937 0.675 0.831 2e-94
356497769256 PREDICTED: carbonic anhydrase, chloropla 0.923 0.753 0.844 5e-94
356497767278 PREDICTED: carbonic anhydrase, chloropla 0.923 0.694 0.844 5e-94
217074216278 unknown [Medicago truncatula] 0.937 0.705 0.821 3e-93
388520057256 unknown [Lotus japonicus] 0.923 0.753 0.834 3e-93
>gi|255568812|ref|XP_002525377.1| carbonic anhydrase, putative [Ricinus communis] gi|223535340|gb|EEF37015.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 182/256 (71%), Positives = 193/256 (75%), Gaps = 47/256 (18%)

Query: 1   MANDAYEDAIAGLTKLL------------------------------------------- 17
           MAND+YE+AIAGL+KLL                                           
Sbjct: 25  MANDSYEEAIAGLSKLLSEKAELGEVAAAKIKQITAELEAAGSKDFDADERIKTGFIHFK 84

Query: 18  ----RKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQ 73
                K+P LYGALAKGQSPKF+VFACSDSRVCPSHILNFQPGEAF+VRNIA+MVPPYDQ
Sbjct: 85  TEKYEKDPTLYGALAKGQSPKFMVFACSDSRVCPSHILNFQPGEAFVVRNIASMVPPYDQ 144

Query: 74  KKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSA 133
            KYSG GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD+GTTASDFIE WVKICSSA
Sbjct: 145 TKYSGMGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASDFIENWVKICSSA 204

Query: 134 KSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 193
           KS+VK ECN LSFEEQC NCEKEAVNVSLGNLLTYPFV E V K TLALKGAHYDFV G 
Sbjct: 205 KSRVKTECNSLSFEEQCHNCEKEAVNVSLGNLLTYPFVVEGVTKKTLALKGAHYDFVKGA 264

Query: 194 FELWDLDFNILPSVSV 209
           FELWDLDF I P+V+V
Sbjct: 265 FELWDLDFKITPTVAV 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107829|ref|XP_002314617.1| predicted protein [Populus trichocarpa] gi|118485783|gb|ABK94740.1| unknown [Populus trichocarpa] gi|222863657|gb|EEF00788.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118486197|gb|ABK94941.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356501896|ref|XP_003519759.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357485881|ref|XP_003613228.1| Carbonic anhydrase [Medicago truncatula] gi|355514563|gb|AES96186.1| Carbonic anhydrase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357485883|ref|XP_003613229.1| Carbonic anhydrase [Medicago truncatula] gi|355514564|gb|AES96187.1| Carbonic anhydrase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356497769|ref|XP_003517731.1| PREDICTED: carbonic anhydrase, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356497767|ref|XP_003517730.1| PREDICTED: carbonic anhydrase, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|217074216|gb|ACJ85468.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388520057|gb|AFK48090.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:2185460331 CA2 "carbonic anhydrase 2" [Ar 0.909 0.574 0.742 4.6e-80
TAIR|locus:2016109280 BCA4 "beta carbonic anhydrase 0.976 0.728 0.688 4.1e-79
TAIR|locus:2084198347 CA1 "carbonic anhydrase 1" [Ar 0.909 0.547 0.736 5.9e-78
TAIR|locus:2034797258 BCA3 "beta carbonic anhydrase 0.937 0.759 0.685 7.5e-78
TAIR|locus:2134218302 BCA5 "beta carbonic anhydrase 0.885 0.612 0.497 2.7e-45
TAIR|locus:2196292290 BCA6 "beta carbonic anhydrase 0.837 0.603 0.454 4.8e-39
TIGR_CMR|GSU_2307211 GSU_2307 "carbonic anhydrase" 0.866 0.857 0.387 1.8e-30
TIGR_CMR|CBU_0139206 CBU_0139 "carbonic anhydrase" 0.775 0.786 0.337 1.4e-25
TIGR_CMR|SPO_3715216 SPO_3715 "carbonic anhydrase, 0.846 0.819 0.360 1.8e-25
TIGR_CMR|CJE_0288211 CJE_0288 "carbonic anhydrase" 0.909 0.900 0.353 5.3e-24
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 761 (272.9 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 141/190 (74%), Positives = 160/190 (84%)

Query:    20 NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA 79
             NP LYG LAKGQSPK++VFACSDSRVCPSH+L+F PG+AF+VRNIANMVPP+D+ KY+G 
Sbjct:   142 NPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGV 201

Query:    80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKK 139
             GAAIEYAVLHLKVENIVVIGHS CGGIKGLMS P +G  ++DFIE+WVKIC  AKSKV  
Sbjct:   202 GAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLA 261

Query:   140 ECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDL 199
             E    +FE+QC  CE+EAVNVSL NLLTYPFVRE VVK TLALKG +YDFVNG FELW+L
Sbjct:   262 ESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWEL 321

Query:   200 DFNILPSVSV 209
              F I P  S+
Sbjct:   322 QFGISPVHSI 331
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P16016CAHC_SPIOL4, ., 2, ., 1, ., 10.74470.91860.6018N/Ano
P46513CAH2_FLALI4, ., 2, ., 1, ., 10.80850.89950.9894N/Ano
P27141CAHC_TOBAC4, ., 2, ., 1, ., 10.71420.98560.6417N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.963
4th Layer4.2.1.10.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_kg.C_LG_X0015
RecName- Full=Carbonic anhydrase; EC=4.2.1.1; (257 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_X0128
hypothetical protein (162 aa)
     •  0.899
estExt_Genewise1_v1.C_LG_IV2986
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa)
      • 0.567
estExt_fgenesh4_pg.C_LG_IX1158
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)
      • 0.561
estExt_Genewise1_v1.C_LG_IV0101
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa)
      • 0.539
gw1.X.878.1
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (953 aa)
      • 0.538

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
PLN00416258 PLN00416, PLN00416, carbonate dehydratase 1e-116
PLN03014347 PLN03014, PLN03014, carbonic anhydrase 1e-103
cd00884190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 3e-95
PLN03019330 PLN03019, PLN03019, carbonic anhydrase 3e-94
PLN03006301 PLN03006, PLN03006, carbonate dehydratase 1e-60
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 1e-57
PLN02154290 PLN02154, PLN02154, carbonic anhydrase 9e-54
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 3e-53
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 1e-44
COG0288207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 2e-40
cd00883182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 1e-33
PRK10437220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 1e-19
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 4e-19
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 2e-08
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 9e-05
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information 
 Score =  330 bits (848), Expect = e-116
 Identities = 144/208 (69%), Positives = 170/208 (81%), Gaps = 5/208 (2%)

Query: 4   DAYEDAIAGLTKL----LRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAF 59
           DA E    G T+       KN  L+  LAK Q+PKFLVFACSDSRVCPSHILNFQPGEAF
Sbjct: 47  DAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAF 106

Query: 60  MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGT-T 118
           +VRNIANMVPP+DQK++SG GAA+EYAV+HLKVENI+VIGHSCCGGIKGLMSI D+   T
Sbjct: 107 VVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPT 166

Query: 119 ASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKN 178
            SDFIE WVKI +SA++K+K+E  DLS+++QC  CEKEAVNVSLGNLL+YPFVR  VVKN
Sbjct: 167 QSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKN 226

Query: 179 TLALKGAHYDFVNGKFELWDLDFNILPS 206
           TLA++G HY+FV G F+LW+LDF   P+
Sbjct: 227 TLAIRGGHYNFVKGTFDLWELDFKTTPA 254

Length = 258
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
PLN00416258 carbonate dehydratase 100.0
PLN03014347 carbonic anhydrase 100.0
PLN03019330 carbonic anhydrase 100.0
PLN03006301 carbonate dehydratase 100.0
PRK10437220 carbonic anhydrase; Provisional 100.0
cd00884190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 100.0
cd00883182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 100.0
PLN02154290 carbonic anhydrase 100.0
COG0288207 CynT Carbonic anhydrase [Inorganic ion transport a 100.0
PRK15219245 carbonic anhydrase; Provisional 100.0
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 100.0
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 100.0
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 100.0
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 100.0
KOG1578276 consensus Predicted carbonic anhydrase involved in 97.92
>PLN00416 carbonate dehydratase Back     alignment and domain information 
Probab=100.00  E-value=3.1e-58  Score=389.35  Aligned_cols=204  Identities=71%  Similarity=1.206  Sum_probs=172.5

Q ss_pred             chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412            4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA   79 (209)
Q Consensus         4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~   79 (209)
                      ..++.++++|++|.+    +++++|..++.||+|+++|||||||||+|+.|||++|||+||+||+||+|+++|....+++
T Consensus        47 ~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~  126 (258)
T PLN00416         47 DAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGV  126 (258)
T ss_pred             HHHHHHHHHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccc
Confidence            345677788888876    4677889999999999999999999999999999999999999999999998775333467


Q ss_pred             hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCC-CCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHH
Q 028412           80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNG-TTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAV  158 (209)
Q Consensus        80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~-~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV  158 (209)
                      ++|||||+.+|+|++|||||||+||||+|+++..... ....+++..|+....|+...........++.+.++.++++||
T Consensus       127 ~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV  206 (258)
T PLN00416        127 GAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAV  206 (258)
T ss_pred             hhHHHHHHHHhCCCEEEEecCCCchHHHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            8999999999999999999999999999988632211 122357999999888887665444444455666566778999


Q ss_pred             HHHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCc
Q 028412          159 NVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSV  207 (209)
Q Consensus       159 ~~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~  207 (209)
                      ++|+++|+++|+|++++++|++.||||+||++||+|++++++.+.-|.-
T Consensus       207 ~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG~v~~~~~~~~~~p~~  255 (258)
T PLN00416        207 NVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKGTFDLWELDFKTTPAF  255 (258)
T ss_pred             HHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEeccCcCCCCCc
Confidence            9999999999999999999999999999999999999999998776654

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03019 carbonic anhydrase Back     alignment and domain information
>PLN03006 carbonate dehydratase Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
1ekj_A221 The X-Ray Crystallographic Structure Of Beta Carbon 2e-81
3qy1_A223 1.54a Resolution Crystal Structure Of A Beta-Carbon 1e-16
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 2e-16
3e3g_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 2e-16
3e24_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 5e-16
3mf3_A221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 6e-16
2a8c_A229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 7e-16
1i6o_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 1e-15
1i6p_A220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 2e-15
3e28_A229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 2e-15
3e2x_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 2e-15
3e1v_A229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 3e-15
3ucj_A227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 5e-15
2w3n_A239 Structure And Inhibition Of The Co2-Sensing Carboni 4e-14
2w3q_A243 Structure And Inhibition Of The Co2-Sensing Carboni 5e-14
1ym3_A215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 2e-13
2a5v_A213 Crystal Structure Of M. Tuberculosis Beta Carbonic 2e-13
3eyx_A216 Crystal Structure Of Carbonic Anhydrase Nce103 From 1e-10
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 139/191 (72%), Positives = 158/191 (82%)
Query: 19  KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 78
           KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQPGEAF+VRN+AN+VPPYDQ KY+G
Sbjct: 31  KNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAG 90
Query: 79  AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVK 138
            GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT ++DFIEEWVKI   AK+KVK
Sbjct: 91  TGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVK 150
Query: 139 KECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWD 198
            +  D  F E C +CEKEAVN SLGNLLTYPFVRE +V  TLALKG +YDFV G FELW 
Sbjct: 151 AQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWG 210
Query: 199 LDFNILPSVSV 209
           L+F +  + SV
Sbjct: 211 LEFGLSSTFSV 221
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 2e-94
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 2e-77
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 3e-76
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 2e-75
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 2e-74
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 2e-71
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 1e-68
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 6e-68
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 4e-64
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 2e-37
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 6e-33
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 7e-29
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 1e-26
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  273 bits (700), Expect = 2e-94
 Identities = 142/212 (66%), Positives = 164/212 (77%), Gaps = 4/212 (1%)

Query: 2   ANDAYEDAIAGL----TKLLRKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGE 57
            ++A E    G      +   KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQPGE
Sbjct: 10  KSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGE 69

Query: 58  AFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGT 117
           AF+VRN+AN+VPPYDQ KY+G GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT
Sbjct: 70  AFVVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGT 129

Query: 118 TASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVK 177
            ++DFIEEWVKI   AK+KVK +  D  F E C +CEKEAVN SLGNLLTYPFVRE +V 
Sbjct: 130 YSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVN 189

Query: 178 NTLALKGAHYDFVNGKFELWDLDFNILPSVSV 209
            TLALKG +YDFV G FELW L+F +  + SV
Sbjct: 190 KTLALKGGYYDFVKGSFELWGLEFGLSSTFSV 221
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
1ekj_A221 Beta-carbonic anhydrase; rossman fold domain, stra 100.0
3qy1_A223 Carbonic anhydrase; structural genomics, center fo 100.0
1ym3_A215 Carbonic anhydrase (carbonate dehydratase) (carbo 100.0
3e3i_A229 Carbonic anhydrase 2, beta carbonic anhydrase; all 100.0
3ucj_A227 Carbonic anhydrase; alpha/beta, strand exchange, l 100.0
3eyx_A216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 100.0
2w3q_A243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 100.0
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ddz_A496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 100.0
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 100.0
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 100.0
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 100.0
3teo_A204 Carbon disulfide hydrolase; beta carbonic anhydras 100.0
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=100.00  E-value=7.7e-61  Score=398.11  Aligned_cols=206  Identities=69%  Similarity=1.162  Sum_probs=179.2

Q ss_pred             chHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccch
Q 028412            4 DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGA   79 (209)
Q Consensus         4 ~~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~   79 (209)
                      ..+++++++|++|.+    .++++|++++.||+|+++|||||||||+|+.+||++|||+||+||+||+|+|+|.+..+++
T Consensus        12 ~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~~~~~   91 (221)
T 1ekj_A           12 EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGT   91 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCcccccccchh
Confidence            345889999999987    4678899999999999999999999999999999999999999999999999875433457


Q ss_pred             hHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHH
Q 028412           80 GAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVN  159 (209)
Q Consensus        80 ~asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~  159 (209)
                      ++|||||+.+|||++|||||||+|||++|+++....+....+++++|++.+.|+...........++.+....++++||+
T Consensus        92 ~asleyAv~~L~v~~IvV~GHs~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~  171 (221)
T 1ekj_A           92 GAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVN  171 (221)
T ss_dssp             HHHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEccCCCCceeeecccccccccchHHHHHHHHhhhhHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999986544443345689999999888876554444444555555667788999


Q ss_pred             HHHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCcCC
Q 028412          160 VSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV  209 (209)
Q Consensus       160 ~~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~~~  209 (209)
                      .|+++|++||+|+++|++|+|.||||+||++||+|+++.++..++|+.++
T Consensus       172 ~~v~~L~~~p~v~~~~~~g~l~v~G~~ydi~tG~v~~~~~~~~~~~~~~~  221 (221)
T 1ekj_A          172 ASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV  221 (221)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCCCCCC
T ss_pred             HHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCCeEEEEecCCCCCccccC
Confidence            99999999999999999999999999999999999999999999998764
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1ekja_210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 4e-63
d1i6pa_214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 6e-51
d1ddza2239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 5e-49
d1ddza1242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 1e-44
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 1e-36
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  193 bits (490), Expect = 4e-63
 Identities = 142/210 (67%), Positives = 163/210 (77%), Gaps = 4/210 (1%)

Query: 4   DAYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAF 59
           +A E    G     +    KNP LYG LAKGQSP F+VFACSDSRVCPSH+L+FQPGEAF
Sbjct: 1   EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 60

Query: 60  MVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTA 119
           +VRN+AN+VPPYDQ KY+G GAAIEYAVLHLKV NIVVIGHS CGGIKGL+S P +GT +
Sbjct: 61  VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYS 120

Query: 120 SDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNT 179
           +DFIEEWVKI   AK+KVK +  D  F E C +CEKEAVN SLGNLLTYPFVRE +V  T
Sbjct: 121 TDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKT 180

Query: 180 LALKGAHYDFVNGKFELWDLDFNILPSVSV 209
           LALKG +YDFV G FELW L+F +  + SV
Sbjct: 181 LALKGGYYDFVKGSFELWGLEFGLSSTFSV 210
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d1ekja_210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 100.0
d1i6pa_214 beta-carbonic anhydrase {Escherichia coli [TaxId: 100.0
d1ddza2239 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1ddza1242 beta-carbonic anhydrase {Red alga (Porphyridium pu 100.0
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 100.0
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=5.5e-60  Score=388.20  Aligned_cols=205  Identities=69%  Similarity=1.163  Sum_probs=182.1

Q ss_pred             hHHHHHHHHHHHHh----hCchhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEeecCCCCCCCcccccchh
Q 028412            5 AYEDAIAGLTKLLR----KNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG   80 (209)
Q Consensus         5 ~~~~~l~~~~~~~~----~~~~~~~~l~~gq~P~~~vitC~DSRv~p~~i~~~~~GdlfviRNaGn~v~~~d~~~~~~~~   80 (209)
                      .+|.++++|++|.+    ++|++|+++++||+|+++|||||||||+|+.+|+.+|||+||+||+||+|+++|.....+++
T Consensus         2 a~e~l~~G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~C~DSRv~~e~if~~~~GdlfvvRnaGn~v~~~~~~~~~~~~   81 (210)
T d1ekja_           2 ASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKYAGTG   81 (210)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTCHHHH
T ss_pred             hHHHHHHHHHHHHhCccccCHHHHHHHhcCCCCceEEEeccccCCChhhhccCCCCcEEEEeccCCccCccccccchhhH
Confidence            47899999999976    47889999999999999999999999999999999999999999999999997754445688


Q ss_pred             HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhhHHHHhhcCCCChHHHhhHHHHHHHHH
Q 028412           81 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV  160 (209)
Q Consensus        81 asleyav~~L~v~~IvV~GHt~CGav~a~~~~~~~~~~~~~~i~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~nV~~  160 (209)
                      +|||||+.+|++++|||||||+||||+|+++....+....+++..|+..+.|+..............++.+.++++||+.
T Consensus        82 ~sleyav~~l~v~~IVVlGHt~CGav~Aa~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~  161 (210)
T d1ekja_          82 AAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNA  161 (210)
T ss_dssp             HHHHHHHHTSCCSEEEEEEESSCHHHHHHHHCCCSSCCCSSSHHHHHGGGHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcCCceEEEEEcCcchHHHHHhhhhhhccCccCchHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999876655555567899999998888877665555555566667788899999


Q ss_pred             HHHHHhcChhHHHHHhcCceeEEEEEEEccCCeEEEEeccCCCCCCcCC
Q 028412          161 SLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV  209 (209)
Q Consensus       161 ~v~~L~~~p~i~~~v~~g~l~v~G~~yDi~tG~v~~~~~~~~~~~~~~~  209 (209)
                      |+++|++||+|++++++|+|.||||+||++||+|++++.+.+..+..+|
T Consensus       162 ~v~~L~~~p~I~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~g~~~~~~~  210 (210)
T d1ekja_         162 SLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV  210 (210)
T ss_dssp             HHHHHTTSHHHHHHHHTTSCEEEEEEEETTTTEEEEEEECCCCCCCCCC
T ss_pred             HHHHHHcCHHHHHHHHcCCeEEEEEEEECCCcEEEEEeccCCCCCCCCC
Confidence            9999999999999999999999999999999999999999988776654
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure