Citrus Sinensis ID: 028432

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MGTLAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
cccccEEEcccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccEEEEEEEccccccccccEEEEEEEEEEcccEEEcccccccccccccEEEEcccccccccHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEc
ccHHHHHEEEcccccccccccccccccHHHHHHHHcccccccHcHcHHHHHHHHHHHHHHHccccccccccccHcccccccEEEEccccEEEEEEEEccccccccccEEEEEEEEEEccccEEcccccccccccccEEEEccccEEEEccccccccEEcccEEEEEEccHHcccccccccccccccccccccccccccEEEEEEHHHcc
MGTLAIQASllfpcasksssikggrpnggvsqnLFAKFSsltvkrlprrtlLQFIGFSSMVlhvnpdfdapmpdmkepeAIRTLKLASGVRIQEiiegegpeasegdivQLNYVcrrsngyfvhstvdqfsgesapvilpldenkIIKGLKEVLVGMKvggkrralippsvgyinenlkpipdefgprrsllshaneplIFEVQLLKVL
MGTLAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIiegegpeasegdIVQLNYVCRRSNGYFVHSTVDQFsgesapvilpldeNKIIKGLKEVLVGMkvggkrralippsvgyineNLKPIPDEFGPRRSLLshaneplifevqllkvl
MGTLAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
*********LLF*******************QNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDF************IRTLKLASGVRIQEIIEG******EGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIP********LLSHANEPLIFEVQLL***
********SLLFPC***************************************FI******************************LASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQ*SGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
MGTLAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
*GTLAIQASLLF*CASKSSSI*****************SSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMP*****EAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTLAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
Q944B0207 Peptidyl-prolyl cis-trans yes no 0.985 0.995 0.657 6e-73
O81864229 Peptidyl-prolyl cis-trans no no 0.583 0.532 0.309 2e-11
Q4PIN7375 FK506-binding protein 4 O N/A no 0.555 0.309 0.323 1e-10
Q4WMV5489 FK506-binding protein 4 O yes no 0.578 0.247 0.302 3e-09
P0CP98405 FK506-binding protein 4 O yes no 0.545 0.281 0.311 2e-08
P0CP99405 FK506-binding protein 4 O N/A no 0.545 0.281 0.311 2e-08
Q6C4C9407 FK506-binding protein 3 O yes no 0.578 0.297 0.294 3e-08
P0A0W2109 FK506-binding protein OS= yes no 0.507 0.972 0.347 3e-08
Q2UN37470 FK506-binding protein 4 O yes no 0.516 0.229 0.304 4e-08
Q10175362 Probable peptidyl-prolyl yes no 0.507 0.292 0.308 5e-08
>sp|Q944B0|FK161_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  273 bits (698), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 136/207 (65%), Positives = 161/207 (77%), Gaps = 1/207 (0%)

Query: 4   LAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLH 63
           +A+   +  P    S ++  G+    VS+     FSS++   +PRR  +Q  GF S++  
Sbjct: 1   MAMAMEISLPFVGSSMALSAGKSRNSVSRISRVGFSSVSAVHVPRRMFMQLSGFGSVLTL 60

Query: 64  VN-PDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYF 122
           ++ P   AP+P MKEPE IRTLKL SGVR QEIIEGEG EA EGD+V+LNYVCRR+NGYF
Sbjct: 61  LDFPSLAAPVPQMKEPEVIRTLKLPSGVRYQEIIEGEGREAHEGDLVELNYVCRRANGYF 120

Query: 123 VHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIP 182
           VHSTVDQFSGES+PV L LDEN +I+GLKEVLVGMK GGKRRALIPPSVGYINE LKPIP
Sbjct: 121 VHSTVDQFSGESSPVKLILDENDVIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIP 180

Query: 183 DEFGPRRSLLSHANEPLIFEVQLLKVL 209
           +EFGPRRSLLSHANEPL+FE+QLLKVL
Sbjct: 181 EEFGPRRSLLSHANEPLVFEIQLLKVL 207
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|O81864|FK171_ARATH Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1 Back     alignment and function description
>sp|Q4PIN7|FKBP4_USTMA FK506-binding protein 4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FPR4 PE=3 SV=1 Back     alignment and function description
>sp|Q4WMV5|FKBP4_ASPFU FK506-binding protein 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fpr4 PE=3 SV=2 Back     alignment and function description
>sp|P0CP98|FKBP4_CRYNJ FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=FPR4 PE=3 SV=1 Back     alignment and function description
>sp|P0CP99|FKBP4_CRYNB FK506-binding protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=FPR4 PE=3 SV=1 Back     alignment and function description
>sp|Q6C4C9|FKBP3_YARLI FK506-binding protein 3 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FPR3 PE=3 SV=1 Back     alignment and function description
>sp|P0A0W2|FKBP_NEIMB FK506-binding protein OS=Neisseria meningitidis serogroup B (strain MC58) GN=fbp PE=1 SV=1 Back     alignment and function description
>sp|Q2UN37|FKBP4_ASPOR FK506-binding protein 4 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=fpr4 PE=3 SV=1 Back     alignment and function description
>sp|Q10175|FKBPH_SCHPO Probable peptidyl-prolyl cis-trans isomerase C27F1.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC27F1.06c PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
224056847180 predicted protein [Populus trichocarpa] 0.846 0.983 0.824 1e-80
296089975210 unnamed protein product [Vitis vinifera] 1.0 0.995 0.680 2e-76
225462015197 PREDICTED: probable peptidyl-prolyl cis- 0.928 0.984 0.701 4e-75
449520092214 PREDICTED: peptidyl-prolyl cis-trans iso 0.851 0.831 0.747 4e-72
18416773207 FKBP-like peptidyl-prolyl cis-trans isom 0.985 0.995 0.657 3e-71
297799350203 immunophilin [Arabidopsis lyrata subsp. 0.918 0.945 0.683 8e-69
255542350166 fkbp-type peptidyl-prolyl cis-trans isom 0.784 0.987 0.765 1e-68
351726896227 uncharacterized protein LOC100500635 [Gl 0.913 0.841 0.640 9e-66
357460235268 FK506-binding protein [Medicago truncatu 0.976 0.761 0.619 6e-65
357460237264 FK506-binding protein [Medicago truncatu 0.956 0.757 0.614 1e-62
>gi|224056847|ref|XP_002299053.1| predicted protein [Populus trichocarpa] gi|222846311|gb|EEE83858.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 146/177 (82%), Positives = 162/177 (91%)

Query: 33  NLFAKFSSLTVKRLPRRTLLQFIGFSSMVLHVNPDFDAPMPDMKEPEAIRTLKLASGVRI 92
           +L  KFSSL +KRL RR +L+F GF++++L +NP   APMP+MKEPE IRTLKLASGVR 
Sbjct: 4   DLHCKFSSLEIKRLSRRMVLKFCGFNTLLLSINPVLAAPMPEMKEPEVIRTLKLASGVRF 63

Query: 93  QEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKE 152
           QEIIEGEGPEA EGD V++NYVCRRSNGYFVHSTVDQFSGES+PVILPLDEN+IIKGLKE
Sbjct: 64  QEIIEGEGPEAQEGDTVEVNYVCRRSNGYFVHSTVDQFSGESSPVILPLDENQIIKGLKE 123

Query: 153 VLVGMKVGGKRRALIPPSVGYINENLKPIPDEFGPRRSLLSHANEPLIFEVQLLKVL 209
           VL+GMKVGGKRRALIPPSVGY+NENLKPIPDEFGPRRSL SHANEPLIFEVQLLKVL
Sbjct: 124 VLIGMKVGGKRRALIPPSVGYVNENLKPIPDEFGPRRSLFSHANEPLIFEVQLLKVL 180

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089975|emb|CBI39794.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462015|ref|XP_002267826.1| PREDICTED: probable peptidyl-prolyl cis-trans isomerase C27F1.06c-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449520092|ref|XP_004167068.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18416773|ref|NP_567750.1| FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] gi|75306033|sp|Q944B0.1|FK161_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic; Short=PPIase FKBP16-1; AltName: Full=FK506-binding protein 16-1; Short=AtFKBP16-1; AltName: Full=Immunophilin FKBP16-1; AltName: Full=Rotamase; Flags: Precursor gi|16612240|gb|AAL27493.1|AF439821_1 AT4g26550/M3E9_20 [Arabidopsis thaliana] gi|21928091|gb|AAM78074.1| AT4g26550/M3E9_20 [Arabidopsis thaliana] gi|26450730|dbj|BAC42474.1| unknown protein [Arabidopsis thaliana] gi|332659818|gb|AEE85218.1| FKBP-like peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799350|ref|XP_002867559.1| immunophilin [Arabidopsis lyrata subsp. lyrata] gi|297313395|gb|EFH43818.1| immunophilin [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255542350|ref|XP_002512238.1| fkbp-type peptidyl-prolyl cis-trans isomerase 2, chloroplast, putative [Ricinus communis] gi|223548199|gb|EEF49690.1| fkbp-type peptidyl-prolyl cis-trans isomerase 2, chloroplast, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351726896|ref|NP_001237142.1| uncharacterized protein LOC100500635 [Glycine max] gi|255630813|gb|ACU15768.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357460235|ref|XP_003600399.1| FK506-binding protein [Medicago truncatula] gi|355489447|gb|AES70650.1| FK506-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357460237|ref|XP_003600400.1| FK506-binding protein [Medicago truncatula] gi|355489448|gb|AES70651.1| FK506-binding protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
TAIR|locus:505006521207 AT4G26555 "AT4G26555" [Arabido 0.976 0.985 0.666 7.2e-68
UNIPROTKB|Q6H725211 P0026H03.28 "Peptidyl-prolyl c 0.928 0.919 0.572 1.2e-51
UNIPROTKB|A8I6B6236 FKB16-1 "Peptidyl-prolyl cis-t 0.669 0.593 0.469 1.6e-29
TAIR|locus:2134035229 AT4G19830 "AT4G19830" [Arabido 0.732 0.668 0.325 3e-14
UNIPROTKB|Q6H6D3213 P0669G09.14 "Peptidyl-prolyl c 0.535 0.525 0.327 2.4e-12
UNIPROTKB|Q7XUX5525 OSJNBa0027P08.21 "Peptidyl-pro 0.545 0.217 0.362 1.1e-09
UNIPROTKB|Q6ZIT9261 OJ1211_G06.16 "Peptidyl-prolyl 0.583 0.467 0.323 7.3e-09
UNIPROTKB|Q74AS7156 GSU2274 "Peptidyl-prolyl cis-t 0.397 0.532 0.356 7.6e-09
TIGR_CMR|GSU_2274156 GSU_2274 "FKBP-type peptidyl-p 0.397 0.532 0.356 7.6e-09
UNIPROTKB|P73037201 ytfC "Peptidyl-prolyl cis-tran 0.464 0.482 0.336 1.4e-08
TAIR|locus:505006521 AT4G26555 "AT4G26555" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 138/207 (66%), Positives = 163/207 (78%)

Query:     4 LAIQASLLFPCASKSSSIKGGRPNGGVSQNLFAKFSSLTVKRLPRRTLLQFIGFSSMVLH 63
             +A++ SL  P    S ++  G+    VS+     FSS++   +PRR  +Q  GF S++  
Sbjct:     3 MAMEISL--PFVGSSMALSAGKSRNSVSRISRVGFSSVSAVHVPRRMFMQLSGFGSVLTL 60

Query:    64 VN-PDFDAPMPDMKEPEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYF 122
             ++ P   AP+P MKEPE IRTLKL SGVR QEIIEGEG EA EGD+V+LNYVCRR+NGYF
Sbjct:    61 LDFPSLAAPVPQMKEPEVIRTLKLPSGVRYQEIIEGEGREAHEGDLVELNYVCRRANGYF 120

Query:   123 VHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIP 182
             VHSTVDQFSGES+PV L LDEN +I+GLKEVLVGMK GGKRRALIPPSVGYINE LKPIP
Sbjct:   121 VHSTVDQFSGESSPVKLILDENDVIEGLKEVLVGMKAGGKRRALIPPSVGYINETLKPIP 180

Query:   183 DEFGPRRSLLSHANEPLIFEVQLLKVL 209
             +EFGPRRSLLSHANEPL+FE+QLLKVL
Sbjct:   181 EEFGPRRSLLSHANEPLVFEIQLLKVL 207
GO:0000412 "histone peptidyl-prolyl isomerization" evidence=IBA
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0005730 "nucleolus" evidence=IBA
GO:0006457 "protein folding" evidence=IEA
GO:0016020 "membrane" evidence=IBA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q6H725 P0026H03.28 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A8I6B6 FKB16-1 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
TAIR|locus:2134035 AT4G19830 "AT4G19830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H6D3 P0669G09.14 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XUX5 OSJNBa0027P08.21 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZIT9 OJ1211_G06.16 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AS7 GSU2274 "Peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2274 GSU_2274 "FKBP-type peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P73037 ytfC "Peptidyl-prolyl cis-trans isomerase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q944B0FK161_ARATH5, ., 2, ., 1, ., 80.65700.98560.9951yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.1LOW CONFIDENCE prediction!
4th Layer5.2.1.8LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0051013901
hypothetical protein (181 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_V2929
hypothetical protein (185 aa)
  ••    0.507
gw1.X.2120.1
RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (156 aa)
  •     0.484
eugene3.00060293
hypothetical protein (206 aa)
  •     0.473
fgenesh4_pg.C_scaffold_7330000001
hypothetical protein (240 aa)
  •     0.470
eugene3.00080515
hypothetical protein (206 aa)
  •     0.468
eugene3.40480001
hypothetical protein (548 aa)
  •     0.446
estExt_Genewise1_v1.C_LG_II4018
hypothetical protein (576 aa)
  •     0.428
estExt_Genewise1_v1.C_LG_VII1249
hypothetical protein (113 aa)
  •     0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 2e-18
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 4e-18
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 2e-05
PRK11570206 PRK11570, PRK11570, peptidyl-prolyl cis-trans isom 1e-04
COG1047174 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans 2e-04
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information 
 Score = 76.1 bits (188), Expect = 2e-18
 Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)

Query: 102 EASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGG 161
           +A +GD V ++Y  +  +G    +  D       P    L   ++I G  E L+GMKVG 
Sbjct: 4   KAKKGDTVTVHYTGKLEDG----TVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGE 59

Query: 162 KRRALIPPSVGYINENLKP--IPDEFGPRRSLLSHANEPLIFEVQLL 206
           KR+  IPP + Y  E L    IP             N  L+FEV+LL
Sbjct: 60  KRKLTIPPELAYGEEGLAGGVIP------------PNATLVFEVELL 94

Length = 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.97
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.97
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.95
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.94
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.94
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.92
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.88
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.79
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.74
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.72
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.67
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 99.17
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.15
PRK01490 435 tig trigger factor; Provisional 99.11
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.92
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 97.93
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.42
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=1.9e-31  Score=214.36  Aligned_cols=109  Identities=38%  Similarity=0.655  Sum_probs=103.9

Q ss_pred             eeecCCCeEEEEEEcCCCCCCCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccE
Q 028432           83 TLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGK  162 (209)
Q Consensus        83 ~~~~~sGl~~~~l~~G~G~~~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~  162 (209)
                      ..++++|++|++++.|+|+.+..+|.|++||++++.||++|||++++    ++|+.|.+|  ++|+||+++|.+|++|++
T Consensus        96 v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~r----g~p~~f~l~--~vI~Gw~egl~~M~vG~k  169 (205)
T COG0545          96 VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDR----GQPAEFPLG--GVIPGWDEGLQGMKVGGK  169 (205)
T ss_pred             ceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCcccccccc----CCCceeecC--CeeehHHHHHhhCCCCce
Confidence            45789999999999999999999999999999999999999999999    899999995  999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432          163 RRALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL  209 (209)
Q Consensus       163 ~~v~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~  209 (209)
                      |+++||+++|||.++... ||            ||++|+|+|+|++|+
T Consensus       170 ~~l~IP~~laYG~~g~~g~Ip------------pns~LvFeVeLl~v~  205 (205)
T COG0545         170 RKLTIPPELAYGERGVPGVIP------------PNSTLVFEVELLDVK  205 (205)
T ss_pred             EEEEeCchhccCcCCCCCCCC------------CCCeEEEEEEEEecC
Confidence            999999999999999655 88            999999999999985

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 6e-11
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 2e-10
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 2e-10
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 3e-10
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 5e-10
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 5e-10
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 7e-10
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-09
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 2e-08
2pbc_A102 Fk506-Binding Protein 2 Length = 102 2e-06
3oe2_A219 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran 1e-05
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 2e-05
1u79_A129 Crystal Structure Of Atfkbp13 Length = 129 5e-05
1yat_A113 Improved Calcineurin Inhibition By Yeast Fkbp12-Dru 8e-04
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 78  PEAIRTLKLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPV 137
           P ++  +   SG++ +++ EG G EA  G  V ++Y    ++G    S+ D+    + P 
Sbjct: 2   PGSMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR----NDPF 57
Query: 138 ILPLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKP-IPDEFGPRRSLLSHAN 196
              L    +IKG  E + GMKVGG RR  IPP +GY        IP             N
Sbjct: 58  AFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIP------------PN 105
Query: 197 EPLIFEVQLLKV 208
             L+FEV+LL V
Sbjct: 106 ATLVFEVELLDV 117
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102 Back     alignment and structure
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129 Back     alignment and structure
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 2e-20
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 7e-20
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 1e-19
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 4e-19
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 4e-19
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 1e-18
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 3e-18
1fd9_A213 Protein (macrophage infectivity potentiator prote; 4e-18
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 9e-18
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 9e-18
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 2e-17
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 4e-17
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 2e-16
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 9e-13
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 3e-09
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 2e-16
1jvw_A167 Macrophage infectivity potentiator; chagas disease 3e-16
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 4e-16
2ppn_A107 FK506-binding protein 1A; high resolution protein 5e-16
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 1e-15
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 1e-15
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 2e-15
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 4e-15
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 9e-15
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 4e-09
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 1e-14
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 2e-14
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 7e-14
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 2e-04
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 8e-10
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 2e-06
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 7e-06
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 1e-05
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 1e-05
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 7e-05
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 2e-04
3prb_A 231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 4e-04
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 7e-04
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 22/125 (17%)

Query: 85  KLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDEN 144
           +LA G+ + E+  G GP+      V++ YV     G      +   S +  P    L  +
Sbjct: 114 ELADGILMTELTPGTGPKPDANGRVEVRYV-----GRLPDGKIFDQSTQ--PQWFRL--D 164

Query: 145 KIIKGLKEVLVGMKVGGKRRALIPPSVGY-INENLKPIPDEFGPRRSLLSHANEPLIFEV 203
            +I G    L  M  G K R +IP    Y        I                PL+FE+
Sbjct: 165 SVISGWTSALQNMPTGAKWRLVIPSDQAYGAEGAGDLID------------PFTPLVFEI 212

Query: 204 QLLKV 208
           +L+ V
Sbjct: 213 ELIAV 217
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169 Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196 Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171 Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151 Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157 Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.96
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.95
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.95
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.95
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.95
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.95
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.95
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.95
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.95
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.95
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.94
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.94
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.94
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.94
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.94
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.94
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.94
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.94
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.94
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.93
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.93
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.92
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.91
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.91
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.89
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.88
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.88
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.87
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.83
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.82
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.82
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.8
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.79
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.79
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.79
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.77
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.77
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.71
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.67
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.54
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.41
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.34
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 98.24
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
Probab=99.96  E-value=2.6e-28  Score=181.08  Aligned_cols=109  Identities=32%  Similarity=0.533  Sum_probs=102.6

Q ss_pred             ecCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEE
Q 028432           85 KLASGVRIQEIIEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKR  163 (209)
Q Consensus        85 ~~~sGl~~~~l~~G~G~~-~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~  163 (209)
                      .+++|++|+++++|+|.. ++.||.|++||++++.||++|++++++    ++|+.|.+|.+++++||+++|.+|++|+++
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~----~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~   78 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDR----GSPFQCNIGVGQVIKGWDVGIPKLSVGEKA   78 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTT----TCCEEEETTSSSSCHHHHHHGGGCCTTCEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCC----CCcEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence            468999999999999998 999999999999998899999999875    689999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432          164 RALIPPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL  209 (209)
Q Consensus       164 ~v~vp~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~  209 (209)
                      ++.||++++||+.+..+ ||            +|++|+|+|+|++|+
T Consensus        79 ~v~ip~~~ayG~~~~~~~Ip------------~~~~l~f~vel~~ik  113 (113)
T 1yat_A           79 RLTIPGPYAYGPRGFPGLIP------------PNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEEECGGGTTTTTCBTTTBC------------TTCCEEEEEEEEEEC
T ss_pred             EEEECHHHCcCCCCCCCCcC------------CCCeEEEEEEEEEeC
Confidence            99999999999988654 77            999999999999986
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 209
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 3e-14
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 4e-14
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 5e-14
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 2e-13
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 5e-13
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 3e-12
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 3e-12
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 1e-11
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 1e-11
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 2e-11
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 4e-11
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 9e-09
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 2e-07
d1ix5a_151 d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu 0.002
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.5 bits (156), Expect = 3e-14
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 16/130 (12%)

Query: 85  KLASGVRIQEIIEGEGPEASEGDIVQLNYVCRRSNGYFVHSTVD-----QFSGESAPVIL 139
              SG+   + + G GPEA +G +++ +YV +  NG    S+ +      F      VI 
Sbjct: 5   VSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIK 64

Query: 140 PLDENKIIKGLKEVLVGMKVGGKRRALIPPSVGYINENLKPIPDEFG-PRRSLLSHANEP 198
             D+        + +  M  GGKR   IPP + Y +            P           
Sbjct: 65  GWDQG---ILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIP-------PASV 114

Query: 199 LIFEVQLLKV 208
           L+F+++ +  
Sbjct: 115 LLFDIEYIGK 124
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.96
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.96
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.96
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.96
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.96
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.96
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.96
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.96
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.94
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.91
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.89
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.77
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.71
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.33
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 99.24
d2f23a279 GreA transcript cleavage factor, C-terminal domain 84.95
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-30  Score=186.12  Aligned_cols=105  Identities=28%  Similarity=0.506  Sum_probs=99.8

Q ss_pred             CeEEEEEEcCCCCC-CCCCCEEEEEEEEEecCCeEEeccccCCCCCCCCEEEEcCCCcchhHHHHHHcCcccccEEEEEe
Q 028432           89 GVRIQEIIEGEGPE-ASEGDIVQLNYVCRRSNGYFVHSTVDQFSGESAPVILPLDENKIIKGLKEVLVGMKVGGKRRALI  167 (209)
Q Consensus        89 Gl~~~~l~~G~G~~-~~~gd~V~v~y~~~~~dG~~~~st~~~~~g~~~p~~f~lG~~~~i~Gl~eaL~gmk~G~~~~v~v  167 (209)
                      |++|+++++|+|.. |+.||.|++||++++.||++|++++++    ++|+.|.+|.+++++||+++|.+|++|++++++|
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~----~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   76 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDR----NKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHH----TSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeecc----ceeeeEeeCcchhheeehhhhcCccCCCEEEEEE
Confidence            79999999999986 799999999999999999999999987    7899999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC-CCCCCCCcccccCCCCCcEEEEEEEEEeC
Q 028432          168 PPSVGYINENLKP-IPDEFGPRRSLLSHANEPLIFEVQLLKVL  209 (209)
Q Consensus       168 p~~~ayg~~g~~~-iP~~~~~~~~~~i~~~~~l~f~Vell~i~  209 (209)
                      ||+++||..+..+ ||            ||++|+|+|+|++|+
T Consensus        77 p~~laYG~~g~~~~IP------------p~s~lif~ieL~~vk  107 (107)
T d2ppna1          77 SPDYAYGATGHPGIIP------------PHATLVFDVELLKLE  107 (107)
T ss_dssp             CGGGTTTTTCBTTTBC------------TTCCEEEEEEEEEEC
T ss_pred             CHHHhCCCCCCCCCCC------------cCCeEEEEEEEEEEC
Confidence            9999999998754 78            999999999999996
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f23a2 d.26.1.2 (A:78-156) GreA transcript cleavage factor, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure